Citrus Sinensis ID: 007863

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
Protein Sequence
MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHcccccHHHHHHHHHcHHHHHHHccHHHHHHcHHHHHHHcccccHHHHHHHHHHHccccHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mamideplyPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELipflsenndddDEVLLAMAEELGVFipyvggleyanvllppletlctveetcVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSscglfhvaypsapeALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGalgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCEavgpeptrsdvvpAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCvkelssdssQHVRSALATVIMGmapilgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLKDKVYSIRDAAANNVKRLAEefgpdwamqhIVPQVLEMINNPHYLYRMTILQAISLLapvmgseitcsqllpvvinaskdrvpniKFNVAKVLQSLipivdqsvvekSIRPClvelsedpdvdvRFFATQALQSkdqvmmsg
Flexible Loop (DISEMBL)
mamideplYPIAVLIDELKNDDIQLRLNSIRRLSTIaralgeertrkelipflsennddDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIgsqmreqdvVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrsdVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSlipivdqsvvEKSIRPCLVelsedpdvdvRFFATqalqskdqvmmsg
Low Complexity Region (SEG)
MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Disordered region (IsUnstruct)
******PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLS*****DDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS*****HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFAT*************
Disordered Region (DISOPRED)
**MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM**
Disordered Region (DISEMBL)
MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE*********RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS********
Disordered Region (DISPRO)
*****EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	587	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	1.0	1.0	0.913	0.0
Q38951	587	Serine/threonine-protein	no	no	1.0	1.0	0.894	0.0
Q38845	588	Serine/threonine-protein	no	no	0.989	0.988	0.864	0.0
P36875	395	Protein phosphatase PP2A	N/A	no	0.671	0.997	0.886	0.0
Q32PI5	589	Serine/threonine-protein	yes	no	0.976	0.972	0.589	0.0
P30153	589	Serine/threonine-protein	yes	no	0.976	0.972	0.589	0.0
P54612	589	Serine/threonine-protein	yes	no	0.976	0.972	0.589	0.0
Q76MZ3	589	Serine/threonine-protein	yes	no	0.976	0.972	0.589	0.0
P54613	602	Serine/threonine-protein	no	no	0.976	0.951	0.582	0.0
Q4QQT4	601	Serine/threonine-protein	no	no	0.976	0.953	0.578	0.0

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/587 (91%), Positives = 572/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+EYA+VLLPPLETL TVEETCVR+KAVESLCR+GSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V+HFI LVKRLAAGEWFTARVS+CG+FH+AYPSAP+ LKTELR++Y QLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           R+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score = 1092 bits (2824), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/587 (89%), Positives = 563/587 (95%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELG FI YVGG+EYA VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRE 
Sbjct: 61  DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+VEHF PL KRL+AGEWFTARVS+CG+FH+AYPSAP+ LKTELR+IY QLCQDDMPMVR
Sbjct: 121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           R+AATNLGKFAAT+E+AHLK++IMS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAY RLL DNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFD+KLGALCMQWL+DKV+SIR+AAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMINNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QS
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVDQ+VVE  IRPCLVELSEDPDVDVR+FA QALQS D VMMS 
Sbjct: 541 LIPIVDQAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score = 1054 bits (2726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/581 (86%), Positives = 553/581 (95%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct: 1   MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIP+VGG+E+A+VLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E 
Sbjct: 61  DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+VE F+PLVKRLA GEWF ARVS+CG+FHVAY    + LKTELR  Y QLC+DDMPMVR
Sbjct: 121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           R+AA+NLGKFA TVE+  L +EIM++F++LT+DDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
            ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR+D+VPAYVRLLRDNEAEVRIAA
Sbjct: 241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CR+LNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAPILGKD+TIE LL
Sbjct: 301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLASQLG+GFFDDKLGALCMQWL+DKVYSIR+AAANN+KRLAEEFGP+WAMQH+VPQV
Sbjct: 421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+M+NNPHYL+RM +L+AISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQS
Sbjct: 481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581
           LIPIVDQSVV+K+IR CLV+LSEDPDVDVR+FA QAL S D
Sbjct: 541 LIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/395 (88%), Positives = 378/395 (95%), Gaps = 1/395 (0%)

Query: 194 VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK 253
           VEAAHLK++IMS+F++LTQDDQDS R LAVEGC ALGKLLEPQDC+AHILPVIVNFSQDK
Sbjct: 1   VEAAHLKTDIMSVFDDLTQDDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNFSQDK 60

Query: 254 SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP 313
           SWRVRYMVANQLYELCEAVGP+ T++++VPAYVRLLRDN AEVRIAAAGKV+K  RIL+P
Sbjct: 61  SWRVRYMVANQLYELCEAVGPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSP 120

Query: 314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 373
           ELAIQHILPCVKELS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLLPIFLSLLKDEFPD
Sbjct: 121 ELAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPD 180

Query: 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 433
           VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF
Sbjct: 181 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF 240

Query: 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRL-AEEFGPDWAMQHIVPQVLEMINNPHYLYR 492
           DDKLGAL MQWLKDK YSIR+AAANNVKRL AEEFGP+WAMQHI+PQVL+MIN+PHYLYR
Sbjct: 241 DDKLGALIMQWLKDKEYSIRNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYR 300

Query: 493 MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEK 552
           MTIL AISLLAPV+GSEIT + LLP+V+NASKDRVPNIKFNVAKVLQSLIPIVD+SVVE 
Sbjct: 301 MTILHAISLLAPVLGSEITSTNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVVES 360

Query: 553 SIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           +IRPCLVELSEDPDVDVRFFA+QALQS DQV MS 
Sbjct: 361 TIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 395

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 442/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD+TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 IGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  681 bits (1756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 20  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 79

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG ++A+ LLPPLE+L TVEET VRDKAVESL +I  +     +  
Sbjct: 80  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 139

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA+G+WFT+R S+CGLF V YP A  A+K E+R  +R LC DD PMVRR+AA
Sbjct: 140 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 199

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E   +KSEI+ +F  L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 200 SKLGEFAKVLELDSVKSEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 259

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL  AVGP+ T +D++PA+  LL+D EAEVR AAA KV
Sbjct: 260 TLRQAAEDKSWRVRYMVADKFSELQRAVGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKV 319

Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            ++C  L  E    + +  ILPC+KEL SD++QHV+SALA+VIMG++ ILGK+ TIE LL
Sbjct: 320 KELCENLPIEGRETIIMNQILPCIKELVSDTNQHVKSALASVIMGLSTILGKENTIEHLL 379

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 380 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 439

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NN+ +L ++FG +WA   IVP+V
Sbjct: 440 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 499

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M N+P+YL+RMT L  I++L+   G EIT  Q+LP+V+  + D+V N++FNVAK LQ 
Sbjct: 500 LVMANDPNYLHRMTTLFCINVLSEACGQEITTKQMLPIVLKMAGDQVANVRFNVAKSLQK 559

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D   +++ ++P L +L +D D+DV++FA +A+
Sbjct: 560 IGPILDTDALQEEVKPVLQKLGQDEDMDVKYFAQEAI 596

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

>sp|Q4QQT4|2AAB_RAT Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Rattus norvegicus GN=Ppp2r1b PE=2 SV=1

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/577 (57%), Positives = 439/577 (76%), Gaps = 4/577 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 19  DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRTELLPFLTDTIYDEDEVL 78

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG ++A+ LLPPLE+L TVEET VRDKAVESL +I  +     +  
Sbjct: 79  LALAEQLGNFTGLVGGPDFAHCLLPPLESLATVEETVVRDKAVESLRQISQEHTPVALEA 138

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA+G+WFT+R S+CGLF V YP A  A+K E+R  +R LC DD PMVRR+AA
Sbjct: 139 HFVPLVKRLASGDWFTSRTSACGLFSVCYPRASNAVKAEIRQHFRSLCSDDTPMVRRAAA 198

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E   +K+EI+ +F  L  D+QDSVRLLAVE C ++ +LL   D  A ++P
Sbjct: 199 SKLGEFAKVLELDSVKTEIVPLFTNLASDEQDSVRLLAVEACVSIAQLLSQDDLEALVMP 258

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGP+   SD++PA+  LLRD EAEVR AAA KV
Sbjct: 259 TLRQAAEDKSWRVRYMVADKFSELQKAVGPKIALSDLIPAFQSLLRDCEAEVRAAAAHKV 318

Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            ++C  L  E    + +  ILP +KEL SD++QHV+SALA+VIMG++ +LGK+ TIE LL
Sbjct: 319 RELCENLPTEGRETVIMNQILPYIKELVSDTNQHVKSALASVIMGLSTVLGKENTIEHLL 378

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 379 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 438

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA NN+ +L ++FG +WA   IVP+V
Sbjct: 439 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATNNLMKLVQKFGTEWAQNTIVPKV 498

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M N+P+YL+RMT L  I+ L+   G EIT  Q+LP+V+  + D+V N++FNVAK LQ 
Sbjct: 499 LVMANDPNYLHRMTTLFCINALSEACGKEITTKQMLPIVLKMAGDQVANVRFNVAKSLQK 558

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D + ++  ++P L +L +D D+DV++FA +A+
Sbjct: 559 IGPILDTNALQGEVKPVLQKLGQDEDMDVKYFAQEAI 595

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
225455902	587	PREDICTED: serine/threonine-protein phos	1.0	1.0	0.940	0.0
224115920	587	predicted protein [Populus trichocarpa]	0.998	0.998	0.938	0.0
297734191	642	unnamed protein product [Vitis vinifera]	1.0	0.914	0.940	0.0
255541788	587	serine/threonine protein phosphatase 2a	1.0	1.0	0.935	0.0
356520585	587	PREDICTED: serine/threonine-protein phos	1.0	1.0	0.923	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	1.0	1.0	0.921	0.0
255576493	587	serine/threonine protein phosphatase 2a	1.0	1.0	0.921	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	1.0	1.0	0.913	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	1.0	1.0	0.911	0.0
353259711	587	serine/threonine protein phosphatase 2a	1.0	1.0	0.921	0.0

>gi|225455902|ref|XP_002276180.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Vitis vinifera]

 Score = 1140 bits (2949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/587 (94%), Positives = 575/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAMIDEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+E+ANVLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+VE FIPLVKRLAAGEWFTARVSSCGLFH+AYPSAPE LKTELR IY QLCQDDMPMVR
Sbjct: 121 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAA+NLGKFAATVEAAHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATI+QLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI+PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQS
Sbjct: 481 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           L PIVDQSVV+K+IRPCLVELSEDPDVDVRFFA+QALQ+ DQ+MMS 
Sbjct: 541 LTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115920|ref|XP_002332045.1| predicted protein [Populus trichocarpa] gi|222875342|gb|EEF12473.1| predicted protein [Populus trichocarpa]

 Score = 1140 bits (2948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/586 (93%), Positives = 574/586 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MA IDEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MATIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMA+ELGVFIPYVGG+EYANVLLPPLETLCTVEETCVRDK+VESLCRIG+QM EQ
Sbjct: 61  DEVLLAMADELGVFIPYVGGVEYANVLLPPLETLCTVEETCVRDKSVESLCRIGTQMIEQ 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V+HFIPLVKRLAAGEWFTARVSSCGLFH+AYPSAPE LKTELR +Y QLCQDDMPMVR
Sbjct: 121 DLVDHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRALYSQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAATNLGKFAATVE  HLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RSAATNLGKFAATVEPVHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPE+AIQHILPCVK+LS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPEVAIQHILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L++INNPHYLYRMTIL A+SLL+PVMGSEITCSQLLP+VINASKDRVPNIKFNVAKVLQS
Sbjct: 481 LDLINNPHYLYRMTILHAVSLLSPVMGSEITCSQLLPIVINASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586
           LIPIVDQSVVEK+IRPCLVELSEDPDVDVRFFATQALQS D VMMS
Sbjct: 541 LIPIVDQSVVEKTIRPCLVELSEDPDVDVRFFATQALQSSDHVMMS 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734191|emb|CBI15438.3| unnamed protein product [Vitis vinifera]

 Score = 1139 bits (2946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 552/587 (94%), Positives = 575/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAMIDEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 56  MAMIDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 115

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+E+ANVLLPPLETLCTVEETCVRDKAVESLCRIG+QMRE 
Sbjct: 116 DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREP 175

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+VE FIPLVKRLAAGEWFTARVSSCGLFH+AYPSAPE LKTELR IY QLCQDDMPMVR
Sbjct: 176 DLVESFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPETLKTELRAIYSQLCQDDMPMVR 235

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAA+NLGKFAATVEAAHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 236 RSAASNLGKFAATVEAAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 295

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLLRDNEAEVRIAA
Sbjct: 296 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLRDNEAEVRIAA 355

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATI+QLL
Sbjct: 356 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIDQLL 415

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 416 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 475

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI+PQV
Sbjct: 476 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIIPQV 535

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMTIL AISLLAPVMG EITCS+LLPVVINA+KDRVPNIKFNVAKVLQS
Sbjct: 536 LDMINNPHYLYRMTILHAISLLAPVMGPEITCSKLLPVVINAAKDRVPNIKFNVAKVLQS 595

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           L PIVDQSVV+K+IRPCLVELSEDPDVDVRFFA+QALQ+ DQ+MMS 
Sbjct: 596 LTPIVDQSVVDKTIRPCLVELSEDPDVDVRFFASQALQASDQIMMSS 642

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541788|ref|XP_002511958.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223549138|gb|EEF50627.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score = 1130 bits (2924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/587 (93%), Positives = 570/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MA +DEPLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MATVDEPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+E+ANVLLPPLETLCTVEETCVRDKAVESLCRIG+QMREQ
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHANVLLPPLETLCTVEETCVRDKAVESLCRIGAQMREQ 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+VE+FIPLVKRLAAGEWFTARVSSCGLFH+AY SAPE +KTELRTIY QLCQDDMPMVR
Sbjct: 121 DLVEYFIPLVKRLAAGEWFTARVSSCGLFHIAYTSAPETIKTELRTIYSQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAATNLGKFAATVE AHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RSAATNLGKFAATVEPAHLKADIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVI NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD+VPAYVRLL DNEAEVRIAA
Sbjct: 241 HILPVIANFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDLVPAYVRLLCDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPELAIQ ILPCVK+LS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQRILPCVKDLSTDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMTIL AISLLAPV+GSEITCS LLPVV+ ASKDRVPNIKFNVAKVLQ 
Sbjct: 481 LDMINNPHYLYRMTILHAISLLAPVVGSEITCSSLLPVVVTASKDRVPNIKFNVAKVLQL 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVD SVVEK+IRPCLVELSEDPDVDVRFFATQALQS DQVMMS 
Sbjct: 541 LIPIVDHSVVEKTIRPCLVELSEDPDVDVRFFATQALQSSDQVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520585|ref|XP_003528942.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max]

 Score = 1127 bits (2916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/587 (92%), Positives = 575/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           MAM+D+PLYPIAVLIDELKN+DIQLRLNSIRRLSTIARALGE+RTRKELIPFLSENNDDD
Sbjct: 1   MAMVDQPLYPIAVLIDELKNEDIQLRLNSIRRLSTIARALGEDRTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+++ANVLLPPLETLCTVEETCVRDK+VESLCRIG+QMREQ
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVDHANVLLPPLETLCTVEETCVRDKSVESLCRIGAQMREQ 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+VEHFIPLVKRLAAGEWFTARVSSCGLFH+AYPSAPE++KTELR IY QLCQDDMPMVR
Sbjct: 121 DLVEHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPESVKTELRAIYGQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAATNLGKFAATVEA HLKS+IMS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RSAATNLGKFAATVEAPHLKSDIMSVFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+PTRS++VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK  RILNP+LAIQHILPCVKELS+DSSQHVRSALA+VIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFSRILNPDLAIQHILPCVKELSTDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANN+KRLAEEFGPDWAMQHI+PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNIKRLAEEFGPDWAMQHIIPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+M+ +PHYLYRMTILQAISLLAPV+GSEIT S+LLP+VINASKDRVPNIKFNVAKVLQS
Sbjct: 481 LDMVTDPHYLYRMTILQAISLLAPVLGSEITSSKLLPLVINASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVDQSVVE +IRPCLVELSEDPDVDVRFFA+QALQS DQV MS 
Sbjct: 541 LIPIVDQSVVESTIRPCLVELSEDPDVDVRFFASQALQSSDQVKMSS 587

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score = 1119 bits (2895), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/587 (92%), Positives = 573/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+E+A+VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V+ FIPLVKRLAAGEWFTARVS+CGLFH+AYPSAPE LKTELR+IY QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPEMLKTELRSIYGQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAATNLGKFAAT+E AHLK++IM+IFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATIEPAHLKTDIMTIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVL 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRIL+PELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILSPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L+MINNPHYLYRMT+L+A+SLLAPVMGSEITC++LLPVVI++SKDRVPNIKFNVAKVLQS
Sbjct: 481 LDMINNPHYLYRMTVLRAVSLLAPVMGSEITCTKLLPVVISSSKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVDQ VVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 541 LIPIVDQPVVEKTIRPSLVELSEDPDVDVRFFANQALQSIDHVMMSS 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score = 1118 bits (2891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/587 (92%), Positives = 569/587 (96%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+ +DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSTVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+E+A+VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRES 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V+ FIPLVKRLAAGEWFTARVS+CGLFH+AYPSAP+ LK ELR+IY QLCQDDMPMVR
Sbjct: 121 DLVDWFIPLVKRLAAGEWFTARVSACGLFHIAYPSAPDVLKAELRSIYSQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAA+NLGKFAATVE AHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct: 181 RSAASNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAM+HI+PQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMRHIIPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+ NPHYLYRMTIL+AISLLAPVMGSEITCS+LLPVV  ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVTNPHYLYRMTILRAISLLAPVMGSEITCSKLLPVVATASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LI IVDQSVVEK+IRPCL ELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 541 LISIVDQSVVEKTIRPCLAELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/587 (91%), Positives = 572/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+EYA+VLLPPLETL TVEETCVR+KAVESLCR+GSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V+HFI LVKRLAAGEWFTARVS+CG+FH+AYPSAP+ LKTELR++Y QLCQDDMPMVR
Sbjct: 121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           R+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEM+NNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/587 (91%), Positives = 573/587 (97%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct: 1   MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+EYA+VLLPPLETL +VEETCVR+KAVESLCR+GSQM+E 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSSVEETCVREKAVESLCRVGSQMKES 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V+HFIPLVKRLAAGEWFTARVS+CG+FH+AYPSAP+ LKTELR++Y QLCQDDMPMVR
Sbjct: 121 DLVDHFIPLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           R+AATNLGKFAAT+E+AHLK++IMS+F++LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct: 181 RAAATNLGKFAATIESAHLKTDIMSMFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct: 301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMINNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS 
Sbjct: 541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMSS 587

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora]

 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 541/587 (92%), Positives = 569/587 (96%)

Query: 1   MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
           M+M+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGE+RTRKELIPFLSENNDDD
Sbjct: 1   MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEDRTRKELIPFLSENNDDD 60

Query: 61  DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
           DEVLLAMAEELGVFIPYVGG+E+A+VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE 
Sbjct: 61  DEVLLAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREG 120

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
           D+V  FIPLVKRLAAGEWFTARVS+CGLFH+AYPSA E LKTELR+IY QLCQDDMPMVR
Sbjct: 121 DLVSWFIPLVKRLAAGEWFTARVSACGLFHIAYPSASETLKTELRSIYSQLCQDDMPMVR 180

Query: 181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
           RSAATNLGKFAATVE AHLK++IMSIFE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct: 181 RSAATNLGKFAATVEPAHLKTDIMSIFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
           HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+PTR+D+VPAYVRLLRDNEAEVRIAA
Sbjct: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRTDLVPAYVRLLRDNEAEVRIAA 300

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
           AGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMA +LGKDATIEQLL
Sbjct: 301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMALVLGKDATIEQLL 360

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           IPLLASQLGVGFFDDKLG+LCMQWL+DKVYSIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct: 421 IPLLASQLGVGFFDDKLGSLCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           LEMI+NPHYLYRMTIL+AI LLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct: 481 LEMIDNPHYLYRMTILRAICLLAPVMGSEITCSKLLPVVVTASKDRVPNIKFNVAKVLQS 540

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG 587
           LIPIVD SVVEK+IRP LVELSEDPDVDVRFFATQALQ+ D VMMS 
Sbjct: 541 LIPIVDHSVVEKTIRPTLVELSEDPDVDVRFFATQALQAIDHVMMSS 587

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	587
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	0.998	0.998	0.914	1.2e-287
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	0.998	0.998	0.895	6.3e-282
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	0.989	0.988	0.864	4.5e-272
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.976	0.972	0.589	5.7e-178
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.976	0.972	0.589	5.7e-178
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.976	0.972	0.589	9.3e-178
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.976	0.972	0.589	1.2e-177
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.976	0.972	0.589	1.2e-177
MGI|MGI:1926334	589	Ppp2r1a "protein phosphatase 2	0.976	0.972	0.589	1.2e-177
RGD|620907	589	Ppp2r1a "protein phosphatase 2	0.976	0.972	0.589	1.2e-177

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2763 (977.7 bits), Expect = 1.2e-287, P = 1.2e-287
 Identities = 536/586 (91%), Positives = 572/586 (97%)

Query:     1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
             DEVLLAMAEELGVFIPYVGG+EYA+VLLPPLETL TVEETCVR+KAVESLCR+GSQMRE 
Sbjct:    61 DEVLLAMAEELGVFIPYVGGVEYAHVLLPPLETLSTVEETCVREKAVESLCRVGSQMRES 120

Query:   121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
             D+V+HFI LVKRLAAGEWFTARVS+CG+FH+AYPSAP+ LKTELR++Y QLCQDDMPMVR
Sbjct:   121 DLVDHFISLVKRLAAGEWFTARVSACGVFHIAYPSAPDMLKTELRSLYTQLCQDDMPMVR 180

Query:   181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
             R+AATNLGKFAATVE+AHLK+++MS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCV 
Sbjct:   181 RAAATNLGKFAATVESAHLKTDVMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVQ 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+++VPAYVRLLRDNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
             AGKVTK CRILNPE+AIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPEIAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             IPLLASQLGVGFFDDKLGALCMQWL+DKV+SIRDAAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct:   421 IPLLASQLGVGFFDDKLGALCMQWLQDKVHSIRDAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             LEM+NNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLPVV+ ASKDRVPNIKFNVAKVLQS
Sbjct:   481 LEMVNNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPVVMTASKDRVPNIKFNVAKVLQS 540

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586
             LIPIVDQSVVEK+IRP LVELSEDPDVDVRFFA QALQS D VMMS
Sbjct:   541 LIPIVDQSVVEKTIRPGLVELSEDPDVDVRFFANQALQSIDNVMMS 586

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 2709 (958.7 bits), Expect = 6.3e-282, P = 6.3e-282
 Identities = 525/586 (89%), Positives = 563/586 (96%)

Query:     1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             M+M+DEPLYPIAVLIDELKNDDIQ RLNSI+RLS IARALGEERTRKELIPFLSENNDDD
Sbjct:     1 MSMVDEPLYPIAVLIDELKNDDIQRRLNSIKRLSIIARALGEERTRKELIPFLSENNDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
             DEVLLAMAEELG FI YVGG+EYA VLLPPLETL TVEETCVR+KAV+SLCRIG+QMRE 
Sbjct:    61 DEVLLAMAEELGGFILYVGGVEYAYVLLPPLETLSTVEETCVREKAVDSLCRIGAQMRES 120

Query:   121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
             D+VEHF PL KRL+AGEWFTARVS+CG+FH+AYPSAP+ LKTELR+IY QLCQDDMPMVR
Sbjct:   121 DLVEHFTPLAKRLSAGEWFTARVSACGIFHIAYPSAPDVLKTELRSIYGQLCQDDMPMVR 180

Query:   181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
             R+AATNLGKFAAT+E+AHLK++IMS+FE+LTQDDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct:   181 RAAATNLGKFAATIESAHLKTDIMSMFEDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
             HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR+D+VPAY RLL DNEAEVRIAA
Sbjct:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTDLVPAYARLLCDNEAEVRIAA 300

Query:   301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
             AGKVTK CRILNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAP+LGKDATIE LL
Sbjct:   301 AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             IPLLASQLGVGFFD+KLGALCMQWL+DKV+SIR+AAANN+KRLAEEFGP+WAMQHIVPQV
Sbjct:   421 IPLLASQLGVGFFDEKLGALCMQWLQDKVHSIREAAANNLKRLAEEFGPEWAMQHIVPQV 480

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             LEMINNPHYLYRMTIL+A+SLLAPVMGSEITCS+LLP VI ASKDRVPNIKFNVAK++QS
Sbjct:   481 LEMINNPHYLYRMTILRAVSLLAPVMGSEITCSKLLPAVITASKDRVPNIKFNVAKMMQS 540

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586
             LIPIVDQ+VVE  IRPCLVELSEDPDVDVR+FA QALQS D VMMS
Sbjct:   541 LIPIVDQAVVENMIRPCLVELSEDPDVDVRYFANQALQSIDNVMMS 586

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 2616 (925.9 bits), Expect = 4.5e-272, P = 4.5e-272
 Identities = 502/581 (86%), Positives = 553/581 (95%)

Query:     1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDD 60
             MAM+DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN+DDD
Sbjct:     1 MAMVDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENSDDD 60

Query:    61 DEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ 120
             DEVLLAMAEELGVFIP+VGG+E+A+VLLPPLE+LCTVEETCVR+KAVESLC+IGSQM+E 
Sbjct:    61 DEVLLAMAEELGVFIPFVGGIEFAHVLLPPLESLCTVEETCVREKAVESLCKIGSQMKEN 120

Query:   121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
             D+VE F+PLVKRLA GEWF ARVS+CG+FHVAY    + LKTELR  Y QLC+DDMPMVR
Sbjct:   121 DLVESFVPLVKRLAGGEWFAARVSACGIFHVAYQGCTDVLKTELRATYSQLCKDDMPMVR 180

Query:   181 RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
             R+AA+NLGKFA TVE+  L +EIM++F++LT+DDQDSVRLLAVEGC ALGKLLEPQDCVA
Sbjct:   181 RAAASNLGKFATTVESTFLIAEIMTMFDDLTKDDQDSVRLLAVEGCAALGKLLEPQDCVA 240

Query:   241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
              ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP+ TR+D+VPAYVRLLRDNEAEVRIAA
Sbjct:   241 RILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDCTRTDLVPAYVRLLRDNEAEVRIAA 300

Query:   301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
             AGKVTK CR+LNPELAIQHILPCVKELSSDSSQHVRSALA+VIMGMAPILGKD+TIE LL
Sbjct:   301 AGKVTKFCRLLNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPILGKDSTIEHLL 360

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY
Sbjct:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLASQLG+GFFDDKLGALCMQWL+DKVYSIR+AAANN+KRLAEEFGP+WAMQH+VPQV
Sbjct:   421 VPLLASQLGIGFFDDKLGALCMQWLQDKVYSIREAAANNLKRLAEEFGPEWAMQHLVPQV 480

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L+M+NNPHYL+RM +L+AISL+APVMGSEITCS+ LPVV+ ASKDRVPNIKFNVAK+LQS
Sbjct:   481 LDMVNNPHYLHRMMVLRAISLMAPVMGSEITCSKFLPVVVEASKDRVPNIKFNVAKLLQS 540

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD 581
             LIPIVDQSVV+K+IR CLV+LSEDPDVDVR+FA QAL S D
Sbjct:   541 LIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYFANQALNSID 581

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 340/577 (58%), Positives = 442/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
             LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
             HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
             + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
             + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   547 IGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 340/577 (58%), Positives = 442/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
             LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
             HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
             + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD+TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
             + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   547 IGPILDNSTLQSEVKPVLEKLTQDQDVDVKYFAQEAL 583

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1726 (612.6 bits), Expect = 9.3e-178, P = 9.3e-178
 Identities = 340/577 (58%), Positives = 441/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
             LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
             HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
             + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
             + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 340/577 (58%), Positives = 441/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
             LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
             HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
             + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
             + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 340/577 (58%), Positives = 441/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
             LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
             HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
             + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
             + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

MGI|MGI:1926334 Ppp2r1a "protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform" [Mus musculus (taxid:10090)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 340/577 (58%), Positives = 441/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
             LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
             HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
             + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
             + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000159 "protein phosphatase type 2A complex" evidence=ISO;IDA

GO:0000775 "chromosome, centromeric region" evidence=ISO

GO:0003823 "antigen binding" evidence=ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IDA

RGD|620907 Ppp2r1a "protein phosphatase 2, regulatory subunit A, alpha" [Rattus norvegicus (taxid:10116)]

 Score = 1725 (612.3 bits), Expect = 1.2e-177, P = 1.2e-177
 Identities = 340/577 (58%), Positives = 441/577 (76%)

Query:     5 DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
             D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct:     7 DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66

Query:    65 LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
             LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct:    67 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126

Query:   125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
             HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct:   127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186

Query:   185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
             + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct:   187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246

Query:   245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
              +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct:   247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306

Query:   305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct:   307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366

Query:   361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
             P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct:   367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426

Query:   421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
             +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct:   427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486

Query:   481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
             L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct:   487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546

Query:   541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
             + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct:   547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA;ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA;ISO

GO:0003823 "antigen binding" evidence=IEA;ISO

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA;ISO

GO:0005829 "cytosol" evidence=IEA;ISO

GO:0007059 "chromosome segregation" evidence=IEA;ISO

GO:0042981 "regulation of apoptotic process" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA;ISO

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.5766	0.9676	0.9610	yes	no
Q54QR9	2AAA_DICDI	No assigned EC number	0.5744	0.9710	0.9760	yes	no
P36875	2AAA_PEA	No assigned EC number	0.8860	0.6712	0.9974	N/A	no
Q32PI5	2AAA_BOVIN	No assigned EC number	0.5892	0.9761	0.9728	yes	no
Q38950	2AAB_ARATH	No assigned EC number	0.9131	1.0	1.0	yes	no
Q38845	2AAA_ARATH	No assigned EC number	0.8640	0.9897	0.9880	no	no
P30153	2AAA_HUMAN	No assigned EC number	0.5892	0.9761	0.9728	yes	no
P31383	2AAA_YEAST	No assigned EC number	0.4429	0.9727	0.8992	yes	no
P54612	2AAA_PIG	No assigned EC number	0.5892	0.9761	0.9728	yes	no
Q09543	2AAA_CAEEL	No assigned EC number	0.4965	0.9778	0.9728	yes	no
Q38951	2AAG_ARATH	No assigned EC number	0.8943	1.0	1.0	no	no
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.5892	0.9761	0.9728	yes	no
Q9UT08	2AAA_SCHPO	No assigned EC number	0.5172	0.9778	0.9728	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	587
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-04
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	8e-04
COG1413	335	COG1413, COG1413, FOG: HEAT repeat [Energy product	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKELSSDSSQH 334
           ++  +PA V LL  ++  V+  AA  ++ +    N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 335 VRS-ALATV--IMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI 378
           V   AL  +  +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLY 266
            E L  D    VR  A     ALG+L +P+      LP ++   +D    VR   A  L 
Sbjct: 5   LEALLSDPDPEVRAAAAR---ALGELGDPE-----ALPALLELLKDPDPEVRRAAAEALG 56

Query: 267 ELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAA 301
           +L +         + +PA + LL+D++  V  AAA
Sbjct: 57  KLGDP--------EALPALLELLQDDDDAVVRAAA 83

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|224331 COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion]

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 62/226 (27%), Positives = 92/226 (40%), Gaps = 29/226 (12%)

Query: 196 AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 255
              L  E      +L +D+   VRL A     ALG+L   +      +P++     D+  
Sbjct: 37  ILELAPEAADELLKLLEDEDLLVRLSAAV---ALGELGSEE-----AVPLLRELLSDEDP 88

Query: 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE-VRIAAAGKVTKICRILNPE 314
           RVR   A+ L EL    G        VP  V LL ++E E VR AAA    +    L  E
Sbjct: 89  RVRDAAADALGEL----GDPEA----VPPLVELLENDENEGVRAAAA----RALGKLGDE 136

Query: 315 LAIQHILPCVKELSSDSSQHVR-SALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD 373
            A+  +L  +++  S S+     +AL  V    A  LG+    E +  + + LL+DE  D
Sbjct: 137 RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLL-IELLEDEDAD 195

Query: 374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
           VR    S L Q      +   +      +V+   D    VR A + 
Sbjct: 196 VRRAAASALGQ------LGSENVEAADLLVKALSDESLEVRKAALL 235

Length = 335

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	587
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.96
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.95
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.95
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.95
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.94
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.92
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.92
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.92
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.9
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.9
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.9
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.89
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.88
PRK09687	280	putative lyase; Provisional	99.87
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.86
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.85
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.85
PRK09687	280	putative lyase; Provisional	99.84
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.84
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.84
PTZ00429	746	beta-adaptin; Provisional	99.84
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.78
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.78
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.78
PTZ00429	746	beta-adaptin; Provisional	99.77
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.75
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.73
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.72
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.71
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.63
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.61
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.57
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.57
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.56
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.55
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.53
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.51
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.49
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.46
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.41
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.41
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.37
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.37
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.37
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.36
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.35
KOG1243	690	consensus Protein kinase [General function predict	99.35
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.35
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.34
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.34
TIGR02270	410	conserved hypothetical protein. Members are found	99.32
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.31
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.28
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.24
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.24
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.24
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.23
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.22
TIGR02270	410	conserved hypothetical protein. Members are found	99.21
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.21
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.18
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.16
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.14
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	99.09
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	99.08
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	99.06
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	99.06
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.05
KOG1243	690	consensus Protein kinase [General function predict	99.04
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.03
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	99.03
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.99
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.99
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.93
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.92
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.87
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.86
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.86
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.84
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.83
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.83
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.78
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.76
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.75
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.73
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.72
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.67
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.67
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.66
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.66
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.63
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.63
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.62
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.61
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.59
KOG0414	1251	consensus Chromosome condensation complex Condensi	98.56
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.55
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.54
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.53
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.53
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.49
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.49
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.49
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	98.48
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.46
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.43
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.41
KOG0567	289	consensus HEAT repeat-containing protein [General	98.4
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.38
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.35
KOG2025	892	consensus Chromosome condensation complex Condensi	98.34
KOG2025	892	consensus Chromosome condensation complex Condensi	98.34
KOG0567	289	consensus HEAT repeat-containing protein [General	98.33
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.32
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.3
KOG2956	516	consensus CLIP-associating protein [General functi	98.28
KOG2956	516	consensus CLIP-associating protein [General functi	98.27
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.25
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.21
PF05004	309	IFRD: Interferon-related developmental regulator (	98.2
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.19
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.16
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.15
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	98.12
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.12
PF05004	309	IFRD: Interferon-related developmental regulator (	98.08
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.06
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.03
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.97
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.92
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.91
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.89
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	97.89
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.84
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.84
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	97.82
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.79
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	97.75
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.74
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	97.73
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.63
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.61
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.6
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	97.58
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.56
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.55
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.42
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.4
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.4
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.39
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.38
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.32
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.29
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.24
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.21
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	97.13
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	97.12
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	97.1
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.06
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	97.04
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.01
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.99
KOG2933	334	consensus Uncharacterized conserved protein [Funct	96.97
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.94
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.9
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.83
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.79
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.65
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	96.6
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.59
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.56
COG5098	1128	Chromosome condensation complex Condensin, subunit	96.56
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.56
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	96.52
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.51
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.5
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.49
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.48
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.45
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.44
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	96.41
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.26
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.26
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.25
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	96.1
KOG2081	559	consensus Nuclear transport regulator [Intracellul	96.1
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.04
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	96.01
KOG2005	878	consensus 26S proteasome regulatory complex, subun	95.99
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	95.95
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.94
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	95.93
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.69
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	95.67
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	95.57
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.54
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	95.45
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	95.4
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.38
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	95.37
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	95.29
PF05536	543	Neurochondrin: Neurochondrin	95.24
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	95.12
KOG1048	717	consensus Neural adherens junction protein Plakoph	95.11
KOG1048	717	consensus Neural adherens junction protein Plakoph	95.06
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.95
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	94.93
COG5656	970	SXM1 Importin, protein involved in nuclear import	94.92
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	94.87
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	94.85
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	94.84
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	94.79
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	94.78
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.78
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	94.73
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.69
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.65
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	94.62
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	94.52
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.47
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.41
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	94.4
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.38
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	94.29
KOG2549	576	consensus Transcription initiation factor TFIID, s	94.22
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	94.11
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	94.11
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	94.1
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	94.09
KOG2973	353	consensus Uncharacterized conserved protein [Funct	94.05
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	93.99
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.86
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	93.8
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	93.65
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	93.59
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.53
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	93.51
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	93.42
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	93.29
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	93.26
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	93.24
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	93.12
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	93.05
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	92.96
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.7
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	92.68
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	92.63
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.54
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	92.46
KOG2149	393	consensus Uncharacterized conserved protein [Funct	92.43
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	92.38
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	92.35
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	92.29
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.26
KOG2149	393	consensus Uncharacterized conserved protein [Funct	91.82
COG5110	881	RPN1 26S proteasome regulatory complex component [	91.68
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	91.5
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	91.41
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	91.38
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.26
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	91.12
PF05536	543	Neurochondrin: Neurochondrin	91.01
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.98
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	90.86
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	90.8
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.79
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	90.77
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	90.66
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	90.62
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.53
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	90.21
KOG2229	616	consensus Protein required for actin cytoskeleton	90.15
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	90.11
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	90.08
KOG2081	559	consensus Nuclear transport regulator [Intracellul	89.9
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.84
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.44
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.01
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	88.94
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	88.92
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	88.89
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	88.87
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	88.63
KOG2005	878	consensus 26S proteasome regulatory complex, subun	88.58
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.35
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	88.35
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	88.23
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	88.15
KOG4646	173	consensus Uncharacterized conserved protein, conta	87.9
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	87.58
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	86.91
KOG3678	832	consensus SARM protein (with sterile alpha and arm	86.54
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.44
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	86.1
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	86.01
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	85.99
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	85.82
PF11935	239	DUF3453: Domain of unknown function (DUF3453); Int	85.51
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	85.51
KOG2229	616	consensus Protein required for actin cytoskeleton	85.37
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	85.23
KOG1932	1180	consensus TATA binding protein associated factor [	84.75
KOG2038	988	consensus CAATT-binding transcription factor/60S r	82.88
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	82.44
PF07539	141	DRIM: Down-regulated in metastasis; InterPro: IPR0	82.21
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	81.55
PF12612	193	TFCD_C: Tubulin folding cofactor D C terminal; Int	81.47
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	81.21
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	81.19
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	80.97
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	80.75
KOG2038	988	consensus CAATT-binding transcription factor/60S r	80.38
KOG3678	832	consensus SARM protein (with sterile alpha and arm	80.21
COG5369	743	Uncharacterized conserved protein [Function unknow	80.2
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	80.14

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-51  Score=402.81  Aligned_cols=580  Identities=54%  Similarity=0.833  Sum_probs=545.5

Q ss_pred             CCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHh
Q 007863            6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYAN   85 (587)
Q Consensus         6 ~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~   85 (587)
                      ++.+|+..+++.+..+|-+.|..+.+.++.++...|.++++..|+|++.+..++.++|+..++..+|.+.++.|+..+.+
T Consensus        79 ~~~~~ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~tr~~lipf~~e~~~~~dev~~~~a~~~~~~~~~v~~~~~~~  158 (759)
T KOG0211|consen   79 DSLYPIAVLIDELSNTDIQLRLNSGRKLSNLALALGVERTRLELIPFLTEAEDDEDEVLLDLAEQLGTFLPDVGGPEYAH  158 (759)
T ss_pred             cccccHHHHhhccCchhhhhhhhhhccccchhhhcccchhhhhhhhHHHHhccchhHHHHHHHHHhcccchhccchhHHH
Confidence            47999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC-HHHHHHH
Q 007863           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP-EALKTEL  164 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~-~~~~~~l  164 (587)
                      .+++.+..++.+.+..+|+++++.+..++..++.+....++.|.+.++..++++..|..++++++..+...+ +.++..+
T Consensus       159 ~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~el  238 (759)
T KOG0211|consen  159 MLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKREL  238 (759)
T ss_pred             HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHH
Confidence            999999999999999999999999999999999888889999999999999999999999999999999988 5589999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh-hhhhchH
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAHIL  243 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~  243 (587)
                      .+.+.++++|.++.||.++++-++.+++.++.+.....++|.+.++..|+.+.||..|+..+..+.+.+... ...+.+.
T Consensus       239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~  318 (759)
T KOG0211|consen  239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLT  318 (759)
T ss_pred             HHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhh
Confidence            999999999999999999999999999999998889999999999999999999999999999999998876 6778899


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----HHHHHHh
Q 007863          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQH  319 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~  319 (587)
                      +.+.+..+|.+|++|......+..+...+|++.......+.+..+++|..+++|.+++.....+.....    .+...+.
T Consensus       319 ~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~  398 (759)
T KOG0211|consen  319 ESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSS  398 (759)
T ss_pred             HHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhh
Confidence            999999999999999999999999999999988888899999999999999999999999999998877    3344567


Q ss_pred             HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHH---HHhHHhhhhhchhhHhh
Q 007863          320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII---SKLDQVNQVIGIDLLSQ  396 (587)
Q Consensus       320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~---~~l~~i~~~~~~~~~~~  396 (587)
                      ++|.+..+..|.+..||.+.+..+..+...+|.+...+.+.|.+...++|..+.||....   ..+....+..|.....+
T Consensus       399 ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~  478 (759)
T KOG0211|consen  399 ILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSN  478 (759)
T ss_pred             hhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhh
Confidence            889999999999999999999999999888898888889999999999999999999999   44555556677778888


Q ss_pred             hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  476 (587)
Q Consensus       397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  476 (587)
                      ..+|.+..+..|.+|++|.++++.+..++...|.+++.+.+.+++..++.|...++|++|...+..++..+|.+|....+
T Consensus       479 slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~  558 (759)
T KOG0211|consen  479 SLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEE  558 (759)
T ss_pred             hhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888999


Q ss_pred             HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHH
Q 007863          477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP  556 (587)
Q Consensus       477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  556 (587)
                      +|.++.+..+++|.+|.+.+.++..++..+|.+.+.+.++|.+..+..|++++||.++++.+..+.+.+..+...+.+.|
T Consensus       559 i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~p  638 (759)
T KOG0211|consen  559 IPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLP  638 (759)
T ss_pred             hHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHH
Confidence            99999998888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          557 CLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       557 ~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      .+..+..|++.|||..|..|++.+.....
T Consensus       639 ll~~L~~d~~~dvr~~a~~a~~~i~l~~~  667 (759)
T KOG0211|consen  639 LLETLSSDQELDVRYRAILAFGSIELSRL  667 (759)
T ss_pred             HHHHhccCcccchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.4e-31  Score=262.12  Aligned_cols=545  Identities=17%  Similarity=0.229  Sum_probs=426.6

Q ss_pred             cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc--CCchHHHHHHHHHhcc----cccCcCCc
Q 007863            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--DDDDEVLLAMAEELGV----FIPYVGGL   81 (587)
Q Consensus         8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~~~~~v~~~~~~~l~~----~~~~~~~~   81 (587)
                      ..++..|+..+.|+|+++|..|-+.+.++..   ++.    ++|.|....  ..++++|..++-.+.+    ..+.+..+
T Consensus         3 ~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~---~~~----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e   75 (1075)
T KOG2171|consen    3 SAPLEQLLQQLLSPDNEVRRQAEEALETLAK---TEP----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE   75 (1075)
T ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHHHHhhc---ccc----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence            3478899999999999999999999987642   222    777776643  4577888766644443    44445544


Q ss_pred             chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH--
Q 007863           82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--  159 (587)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~--  159 (587)
                      ...+..-.+|..+...+.+.||++.++.+..+++..-++ -++.+++++.+..+++++..|..|..++..+....+..  
T Consensus        76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~  154 (1075)
T KOG2171|consen   76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ  154 (1075)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence            444555556777778899999999999999999998777 67889999999999999999999999998887666543  


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-h-------hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 007863          160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-A-------HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG  230 (587)
Q Consensus       160 -~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~-------~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                       +...+.+++.+.+.|++..||..++++++.++...+. .       ...+.++..+.....+++...-..+.+++..+.
T Consensus       155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~  234 (1075)
T KOG2171|consen  155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELL  234 (1075)
T ss_pred             hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHH
Confidence             6789999999999999888999999999999998852 1       223344555566667777777788888888888


Q ss_pred             cccCh--hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHHHHHHhCC-----CCcccchHHHHHHhcC----CCh----
Q 007863          231 KLLEP--QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP-----EPTRSDVVPAYVRLLR----DNE----  293 (587)
Q Consensus       231 ~~~~~--~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~----d~~----  293 (587)
                      ...++  ......++.+......++  +..+|..|++.+..+++.-+.     ......+++.+.....    |++    
T Consensus       235 e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~  314 (1075)
T KOG2171|consen  235 ESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNE  314 (1075)
T ss_pred             hhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccc
Confidence            77665  334556666667766654  789999999999988876321     1133456666666543    211    


Q ss_pred             --------HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHH
Q 007863          294 --------AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIF  363 (587)
Q Consensus       294 --------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l  363 (587)
                              ...-..|.+++..++.++|++...+.+++.+..++.+++|.-|.++..+++.+++..++.  ...+.++|++
T Consensus       315 d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~V  394 (1075)
T KOG2171|consen  315 DDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIV  394 (1075)
T ss_pred             cccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence                    124678899999999999999888999999999999999999999999999999887643  3567899999


Q ss_pred             HHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHH---
Q 007863          364 LSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDK---  436 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~---  436 (587)
                      ...++|++|.||.+|+.+++.+...+.++   .+.+.+.|.+...+.+ .+.+|...+..++-.+......+.+.++   
T Consensus       395 l~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~  474 (1075)
T KOG2171|consen  395 LNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDG  474 (1075)
T ss_pred             HhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999999999999888765   3445677788777776 4779999999999888887776655544   


Q ss_pred             HHH-HHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC----ccHHHHHHHHHHHHhhcccChH
Q 007863          437 LGA-LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP----HYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       437 l~~-~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      ++. .+..+.+++.+.||+.++.+++..+...+..|  +.+.++|.+.+.+...    ...+|...+.+++.++..+|++
T Consensus       475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke  554 (1075)
T KOG2171|consen  475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE  554 (1075)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence            444 44556788899999999999999999888776  4588999998887544    3568888899999999999988


Q ss_pred             HH---HHhHHHHHHhh---cCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHH
Q 007863          510 IT---CSQLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVE  560 (587)
Q Consensus       510 ~~---~~~~l~~l~~~---l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~  560 (587)
                      .|   .+.++..+...   ..+.+...|...+.+.+.+++.++++  +|...++|.+.+
T Consensus       555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~  613 (1075)
T KOG2171|consen  555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLK  613 (1075)
T ss_pred             hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHH
Confidence            66   45566666666   44567788889999999999999875  777888887776

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-29  Score=253.16  Aligned_cols=573  Identities=17%  Similarity=0.198  Sum_probs=420.6

Q ss_pred             HHHHHhcC-ccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCchHHHHHHHHHhcccccCcCCcc--hHhhhh
Q 007863           13 VLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGLE--YANVLL   88 (587)
Q Consensus        13 ~l~~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~~~~~~~~~~--~~~~l~   88 (587)
                      .++..+.+ +.+.+|+.-.+.+.++++...++ .|++|+|+|.++. +.++..|..+...+..+...+|+..  |...+.
T Consensus        83 ~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~  161 (1075)
T KOG2171|consen   83 SLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLL  161 (1075)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHH
Confidence            34444444 57899999999999999999988 9999999999854 6678888888888888777776543  567888


Q ss_pred             hHHHhhhcCchhHHHHHHHHHHHHHHhhcC--hhhH--hhhhHHHHHHhh----cCCCCcchhhHHhhhhhhccCCCH--
Q 007863           89 PPLETLCTVEETCVRDKAVESLCRIGSQMR--EQDV--VEHFIPLVKRLA----AGEWFTARVSSCGLFHVAYPSAPE--  158 (587)
Q Consensus        89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~--~~~~--~~~ll~~~~~l~----~~~~~~~r~~a~~l~~~~~~~~~~--  158 (587)
                      +++.+-+.|++..||-.|+++++.++..+.  ...+  ...++|-+.+.+    .+++...-..+...+..+....++  
T Consensus       162 ~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l  241 (1075)
T KOG2171|consen  162 RLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLL  241 (1075)
T ss_pred             HHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHH
Confidence            999998888887799999999999999885  2222  234566444433    333333334455555555555544  


Q ss_pred             -HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhcccC---------------c
Q 007863          159 -ALKTELRTIYRQLCQDD--MPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDD---------------Q  215 (587)
Q Consensus       159 -~~~~~l~~~l~~l~~~~--~~~vR~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~l~~d~---------------~  215 (587)
                       .+...++.+......+.  +..+|..|.+.|..+++..+.     ..+.+.+++.+..+..+.               +
T Consensus       242 ~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~  321 (1075)
T KOG2171|consen  242 RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDD  321 (1075)
T ss_pred             HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccc
Confidence             35666777777776665  688999999999999998553     335666777666654421               1


Q ss_pred             -hhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCC
Q 007863          216 -DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDN  292 (587)
Q Consensus       216 -~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~  292 (587)
                       ..-...|.+++..++-.++.+...+.+++.+..++.+++|+-|.++..+|+.++...++.  ...+.+++.....++|+
T Consensus       322 ~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp  401 (1075)
T KOG2171|consen  322 EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP  401 (1075)
T ss_pred             ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC
Confidence             225667899999999999988889999999999999999999999999999998765542  13457899999999999


Q ss_pred             hHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhchHHHHH---hHHH-HHH
Q 007863          293 EAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKDATIE---QLLP-IFL  364 (587)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~-~l~  364 (587)
                      ++.||.+|+.+++.++..+.++   .+.+.+.|.+...+.|. +.+|...|+.++..+.....++...+   .++. .+.
T Consensus       402 hprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~  481 (1075)
T KOG2171|consen  402 HPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLL  481 (1075)
T ss_pred             CHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999886   33345666777766665 67999999999998888777655443   3444 444


Q ss_pred             HhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCC----CcHHHHHHHHHHHHHHHhhChhhHHHH--
Q 007863          365 SLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR----HWRVRLAIIEYIPLLASQLGVGFFDDK--  436 (587)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~----~~~vr~~~~~~l~~l~~~~~~~~~~~~--  436 (587)
                      .++..+.+.||..++.+++.++...+..  .+.+.++|.+...+...    ....|...+++++.++..+|.+.|.+.  
T Consensus       482 ~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~  561 (1075)
T KOG2171|consen  482 LLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAE  561 (1075)
T ss_pred             HHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHH
Confidence            5566778999999999999999887754  34577889888887543    356788888999999988887766543  


Q ss_pred             -HHHHHHHH---cCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh--------------------------
Q 007863          437 -LGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI--------------------------  484 (587)
Q Consensus       437 -l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l--------------------------  484 (587)
                       ++.++...   ..+.+...|...+..++.+++.+|.+|  |.+.++|.++.-.                          
T Consensus       562 eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~  641 (1075)
T KOG2171|consen  562 ELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVV  641 (1075)
T ss_pred             HHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhh
Confidence             33333333   334455566666666666666665554  2333444333311                          


Q ss_pred             ----------------------------------------------------cCCccHHHHHHHHHHHHhhccc------
Q 007863          485 ----------------------------------------------------NNPHYLYRMTILQAISLLAPVM------  506 (587)
Q Consensus       485 ----------------------------------------------------~~~~~~~r~~a~~~l~~l~~~~------  506 (587)
                                                                          ......||.+|+.++..+....      
T Consensus       642 ~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~  721 (1075)
T KOG2171|consen  642 ELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQG  721 (1075)
T ss_pred             ccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence                                                                1123345555555554444210      


Q ss_pred             ChH-----------------------------------------------------------------------------
Q 007863          507 GSE-----------------------------------------------------------------------------  509 (587)
Q Consensus       507 ~~~-----------------------------------------------------------------------------  509 (587)
                      ++.                                                                             
T Consensus       722 ~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~e  801 (1075)
T KOG2171|consen  722 GPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDE  801 (1075)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            000                                                                             


Q ss_pred             --------------------------------------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--H
Q 007863          510 --------------------------------------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--V  549 (587)
Q Consensus       510 --------------------------------------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~  549 (587)
                                                            ++...+.|.++.++.+..+.-|..++-.++.+++..++.  .
T Consensus       802 ed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~  881 (1075)
T KOG2171|consen  802 EDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAK  881 (1075)
T ss_pred             hhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccch
Confidence                                                  356778888888888887777999999999998887764  7


Q ss_pred             HHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          550 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       550 ~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +...++|.+.+++.|++|+||.+|..+++.+++.-|+
T Consensus       882 ~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~  918 (1075)
T KOG2171|consen  882 YKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGE  918 (1075)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc
Confidence            7789999999999999999999999999999998764

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-32  Score=266.97  Aligned_cols=519  Identities=19%  Similarity=0.264  Sum_probs=450.3

Q ss_pred             HHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhH
Q 007863           66 AMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSS  145 (587)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a  145 (587)
                      ....-+.+++-..|.+-....++|.+.... +.+..|...+...++.+....+...+...++|-+..++......+|..+
T Consensus       101 ~~~~~l~~~a~~~~~~~tr~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~~~~~~~~ll~~le~l~~~eet~vr~k~  179 (759)
T KOG0211|consen  101 NSGRKLSNLALALGVERTRLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVGGPEYAHMLLPPLELLATVEETGVREKA  179 (759)
T ss_pred             hhhccccchhhhcccchhhhhhhhHHHHhc-cchhHHHHHHHHHhcccchhccchhHHHHhhHHHHhhhHHHHHHHHHHH
Confidence            333344444333444434567888888877 8889999999999999999988888888888999888888877788888


Q ss_pred             HhhhhhhccCCCH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHH
Q 007863          146 CGLFHVAYPSAPE-ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVE  224 (587)
Q Consensus       146 ~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~  224 (587)
                      +.-+..+....++ .....+.+++..+..++...-|..++..++..+...++...+..+.|.+.++++|..+.||..+..
T Consensus       180 ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~  259 (759)
T KOG0211|consen  180 VESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVAS  259 (759)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence            7765555444444 467889999999988866667888888888888877767889999999999999999999999999


Q ss_pred             HHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCChHHHHHHHHHh
Q 007863          225 GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGK  303 (587)
Q Consensus       225 ~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (587)
                      -++.+++.++.+.....+.|.+..+..|....||..|...+..+...+... ...+.+.+.+.+..+|.+|.+|......
T Consensus       260 ~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~  339 (759)
T KOG0211|consen  260 NLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADK  339 (759)
T ss_pred             hhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhh
Confidence            999999999888888899999999999999999999999999999888766 5566789999999999999999999999


Q ss_pred             HHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCCChHHHHHHH
Q 007863          304 VTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDEFPDVRLNII  379 (587)
Q Consensus       304 l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~  379 (587)
                      +..+...++++.......+.+..+++|..|.+|.+.+.-...+.....    .....+.++|.+..+..|.+..||.+.+
T Consensus       340 ~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a  419 (759)
T KOG0211|consen  340 FSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA  419 (759)
T ss_pred             hhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence            999999999865556678888899999999999999999888887776    3344567789999999999999999999


Q ss_pred             HHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHH---HHhhChhhHHHHHHHHHHHHcCCCchHHHHHH
Q 007863          380 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL---ASQLGVGFFDDKLGALCMQWLKDKVYSIRDAA  456 (587)
Q Consensus       380 ~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l---~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  456 (587)
                      .....+.+.+|.+.....+.|.+...++|..+.||......+...   ....|.....+..+|.+..+..|..|++|.+.
T Consensus       420 ~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ai  499 (759)
T KOG0211|consen  420 SVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAI  499 (759)
T ss_pred             ccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHH
Confidence            999999998888877788999999999999999999999655433   33446666778899999999999999999999


Q ss_pred             HHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHH
Q 007863          457 ANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK  536 (587)
Q Consensus       457 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~  536 (587)
                      +..+..++...|..++.+.+-+.+...+.|..+.+|.++...+..++..+|.+|....++|.++.+..++++.+|.+.+.
T Consensus       500 l~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~  579 (759)
T KOG0211|consen  500 LEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF  579 (759)
T ss_pred             HHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence            99999999999988888888888888899999999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          537 VLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       537 ~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      ++..+.+.+|.+.+.+.++|.+..+..|++++||.++++.|..+...+-
T Consensus       580 si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~  628 (759)
T KOG0211|consen  580 SIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD  628 (759)
T ss_pred             HHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999988764

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-29  Score=236.73  Aligned_cols=572  Identities=20%  Similarity=0.189  Sum_probs=402.2

Q ss_pred             CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHH-----------------------
Q 007863            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEV-----------------------   63 (587)
Q Consensus         7 ~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v-----------------------   63 (587)
                      -+..+..+++.-.|+|+++|..+...+...-.  .| .+...|+=.|.+..+.+...                       
T Consensus        11 ~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~--~p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~   87 (885)
T KOG2023|consen   11 GLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL--FP-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV   87 (885)
T ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHHhc--cc-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence            34567888888889999999999988876532  22 23344443333222222222                       


Q ss_pred             ----HHHHHHHhccccc--------------CcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh------
Q 007863           64 ----LLAMAEELGVFIP--------------YVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE------  119 (587)
Q Consensus        64 ----~~~~~~~l~~~~~--------------~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~------  119 (587)
                          +......+|.--+              .-++-.+.+.++|-|.+++.+++....+.|..+|..+|+....      
T Consensus        88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~  167 (885)
T KOG2023|consen   88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDV  167 (885)
T ss_pred             HHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhc
Confidence                2222222221111              1123446789999999999999999999999999999986532      


Q ss_pred             -hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Q 007863          120 -QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE  195 (587)
Q Consensus       120 -~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~  195 (587)
                       +.....++|-+.++.++.++..|..|+..+..+...-+.   ...+.+++.+..+..|.++.||+..|.++..+.+..+
T Consensus       168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~  247 (885)
T KOG2023|consen  168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP  247 (885)
T ss_pred             ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH
Confidence             223456788888888888999999888766555444333   2678899999999999999999999999999998776


Q ss_pred             h--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHh----------cC--------
Q 007863          196 A--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNF----------SQ--------  251 (587)
Q Consensus       196 ~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~----------~~--------  251 (587)
                      +  ....+.++.+..+..+|.+.+|...|++.+..+++.--.    ..+.+.++|.+..-          +.        
T Consensus       248 dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~v  327 (885)
T KOG2023|consen  248 DKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESV  327 (885)
T ss_pred             HhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccC
Confidence            5  245566778888888999999999999999998876432    23445566665431          11        


Q ss_pred             ----------------------------C----------CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh
Q 007863          252 ----------------------------D----------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE  293 (587)
Q Consensus       252 ----------------------------d----------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  293 (587)
                                                  |          .+|..|+..+.+|..++..++.+. .+.++|.+.+.+...+
T Consensus       328 pDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~~  406 (885)
T KOG2023|consen  328 PDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSEE  406 (885)
T ss_pred             CchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcch
Confidence                                        0          139999999999999998887654 4568899999999999


Q ss_pred             HHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHH---HHhcC
Q 007863          294 AEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF---LSLLK  368 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~  368 (587)
                      |.||++++-++|.+++.+..-  .+++.++|.+..++.|+.+-||...|..++++++.+-.+...+++.|.+   ...+-
T Consensus       407 W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll  486 (885)
T KOG2023|consen  407 WKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL  486 (885)
T ss_pred             hhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh
Confidence            999999999999999976543  5668899999999999999999999999999988775443334444544   44556


Q ss_pred             CCChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhC----hhhHHHHHHH
Q 007863          369 DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA---EDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGA  439 (587)
Q Consensus       369 d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~---~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~  439 (587)
                      |.+..|+.+|+++++.+-+..|.+-  +.+.++..+...+   +.+|-.+   ...+++.++..+|    ...+.+.++|
T Consensus       487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~YiqiLmP  563 (885)
T KOG2023|consen  487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQILMP  563 (885)
T ss_pred             cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHHhcc
Confidence            8999999999999999988777552  2223333333222   2344443   3445555565554    3444556666


Q ss_pred             HHHH---HcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHh-----------hhcC-----CccHHHHHHHHH
Q 007863          440 LCMQ---WLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLE-----------MINN-----PHYLYRMTILQA  498 (587)
Q Consensus       440 ~l~~---~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~-----------~l~~-----~~~~~r~~a~~~  498 (587)
                      .+++   .+.|++.++ ---++|+..++..+|..|  +...+....+.           ...+     |+...-..++..
T Consensus       564 PLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL  642 (885)
T KOG2023|consen  564 PLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDL  642 (885)
T ss_pred             HHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHH
Confidence            6553   467777664 456788888888877654  11112111111           1122     244455688899


Q ss_pred             HHHhhcccChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHH
Q 007863          499 ISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFF  572 (587)
Q Consensus       499 l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~  572 (587)
                      ++.+++.+|..    .....++..++.++.|+.|+||+.+...||-+.......  +....++|.+..=++-..-.|-.+
T Consensus       643 ~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nN  722 (885)
T KOG2023|consen  643 LSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNN  722 (885)
T ss_pred             HhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHH
Confidence            99999877754    235678899999999999999999999999998876332  344556666664334444568999


Q ss_pred             HHHHHHHHHHHhhc
Q 007863          573 ATQALQSKDQVMMS  586 (587)
Q Consensus       573 a~~al~~l~~~~~~  586 (587)
                      |.+|+|.++..+|.
T Consensus       723 A~WAiGeia~k~g~  736 (885)
T KOG2023|consen  723 AIWAIGEIALKMGL  736 (885)
T ss_pred             HHHHHHHHHHHhch
Confidence            99999999988874

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.96  E-value=4.4e-25  Score=209.16  Aligned_cols=559  Identities=18%  Similarity=0.254  Sum_probs=398.5

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCch-HH-HHHHHHHhccccc----CcC---
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-EV-LLAMAEELGVFIP----YVG---   79 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~v-~~~~~~~l~~~~~----~~~---   79 (587)
                      .|..++-.+++..+..|..|++.|..-+..+|+.-..+.++|.+.+ .+++.+ +. ...+-+.|..+..    |+.   
T Consensus       364 ~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkIL  443 (1172)
T KOG0213|consen  364 KIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKIL  443 (1172)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeE
Confidence            3778888999999999999999999999999998888999998877 445433 22 2223333333211    111   


Q ss_pred             --------CcchH-----hhhhh----------HHHhh---hcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHh
Q 007863           80 --------GLEYA-----NVLLP----------PLETL---CTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL  133 (587)
Q Consensus        80 --------~~~~~-----~~l~~----------~l~~l---~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l  133 (587)
                              ++++-     ..++.          .+..+   +.+.|+.||+...++++.+++.++-    +.++||+...
T Consensus       444 vViepllided~yar~egreIisnLakaaGla~mistmrpDidn~deYVRnttarafavvasalgi----p~llpfLkav  519 (1172)
T KOG0213|consen  444 VVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAV  519 (1172)
T ss_pred             EEeecceecchHHHhhchHHHHHHHHHHhhhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHH
Confidence                    11100     11111          11111   2466889999999999999998874    5789999999


Q ss_pred             hcCC-CCcchhhHHhhhhhhccCCC---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHH-
Q 007863          134 AAGE-WFTARVSSCGLFHVAYPSAP---EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMS-  205 (587)
Q Consensus       134 ~~~~-~~~~r~~a~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~-  205 (587)
                      +.+. +|..|..++.+...++...+   -.+...++.++..++.|.+..||.-++-++..+++..++   +.+...+.| 
T Consensus       520 c~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpL  599 (1172)
T KOG0213|consen  520 CGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPL  599 (1172)
T ss_pred             hccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9887 77888777776655443322   247788999999999999999999999999999887653   222222222 


Q ss_pred             ----------------------------------------HHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhch-
Q 007863          206 ----------------------------------------IFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHI-  242 (587)
Q Consensus       206 ----------------------------------------~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l-  242 (587)
                                                              ++..-.++++++.++.....+..++...+-  ......+ 
T Consensus       600 wkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dil  679 (1172)
T KOG0213|consen  600 WKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDIL  679 (1172)
T ss_pred             HHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhh
Confidence                                                    222223344555555555555554433221  1111111 


Q ss_pred             --------------------------------------HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCccc----c
Q 007863          243 --------------------------------------LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS----D  280 (587)
Q Consensus       243 --------------------------------------~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~  280 (587)
                                                            +.-+..-+.|.++..|+.+++....+...+|......    .
T Consensus       680 p~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~  759 (1172)
T KOG0213|consen  680 PEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEER  759 (1172)
T ss_pred             HHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHH
Confidence                                                  2222223356677777777777777777666533322    2


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh---chHHH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDAT  355 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~  355 (587)
                      ++..+.-.++..+.+.. ..+..++.+.+.++.  ..+.+.+...+...++++++.||..+++.++.++..+   +.+..
T Consensus       760 lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~  838 (1172)
T KOG0213|consen  760 LIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKL  838 (1172)
T ss_pred             HHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            33333333433332222 456677777777776  4667788888889999999999999999999887665   44555


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 007863          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  432 (587)
                      ..++--.+...+....++|--..+.++..|...+|....   ...++|.+...+++.+.+|..+++..++.++.....-.
T Consensus       839 m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v  918 (1172)
T KOG0213|consen  839 MGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV  918 (1172)
T ss_pred             HHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC
Confidence            667777788899999999999999999999988875432   24688888888999999999999999999987533211


Q ss_pred             HHHHHHHHHH---HHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH
Q 007863          433 FDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       433 ~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      -....+.++.   .++.....++|.+|.+.+|.+++..|+.    .++..+++.+...+.+.|.+..-+|+.+++.+++-
T Consensus       919 ~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq----dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF  994 (1172)
T KOG0213|consen  919 SAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ----DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF  994 (1172)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH----HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch
Confidence            1234444444   4567888999999999999999999975    46777777777777888988999999999888875


Q ss_pred             HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          510 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                          .++|.+.+-..-|..+|....+++++.+++.++.-  .+.-.+.|.|...+.|.|+.-|..|..++..++
T Consensus       995 ----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen  995 ----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             ----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence                68888888888999999999999999999998863  566789999999999999999999999988764

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9e-24  Score=201.50  Aligned_cols=525  Identities=17%  Similarity=0.181  Sum_probs=372.8

Q ss_pred             CchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchh-HHHHHHHHHHHHHHhhcChhhHhhh---hH-HHHHHh
Q 007863           59 DDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEET-CVRDKAVESLCRIGSQMREQDVVEH---FI-PLVKRL  133 (587)
Q Consensus        59 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~---ll-~~~~~l  133 (587)
                      ..+.....++.+++.++..==.....+.+++.+..-..++.+ .+++.++++++.+|+.+.++.....   ++ .++...
T Consensus       102 ~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gm  181 (859)
T KOG1241|consen  102 PEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGM  181 (859)
T ss_pred             CCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhc
Confidence            455555555565555543211123456666666655555544 5999999999999999999865433   22 333333


Q ss_pred             hcCC-CCcchhhHHhhhhhhcc----CCC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHH
Q 007863          134 AAGE-WFTARVSSCGLFHVAYP----SAP-EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIM  204 (587)
Q Consensus       134 ~~~~-~~~~r~~a~~l~~~~~~----~~~-~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~  204 (587)
                      .+.+ +..+|.+|...+....+    ++. +..++.+++.+.+..+.++.++|.++.++|.+++...-+   ....+.++
T Consensus       182 rk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alf  261 (859)
T KOG1241|consen  182 RKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALF  261 (859)
T ss_pred             cccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333 56788888775544322    232 347888999999999999999999999999999875433   22333466


Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccCh---------hh------------hhhchHHHHHHhcC-------CCchH
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEP---------QD------------CVAHILPVIVNFSQ-------DKSWR  256 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---------~~------------~~~~l~~~l~~~~~-------d~~~~  256 (587)
                      ++-..-..++++.|...+++.+..+++.--+         +.            -.+.++|.+++++.       |++|.
T Consensus       262 aitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn  341 (859)
T KOG1241|consen  262 AITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN  341 (859)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence            6666667788899999999999977643111         00            12357787777653       35799


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcH
Q 007863          257 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       257 vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~  333 (587)
                      .-++|..||.-++...+++.. +.++|++.+.++.++|+-|.+++-++|.+.....+.   ......+|.+..+..|++-
T Consensus       342 p~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl  420 (859)
T KOG1241|consen  342 PAKAAGVCLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSL  420 (859)
T ss_pred             HHHHHHHHHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchh
Confidence            999999999999998887664 479999999999999999999999999998865544   3456788999999999999


Q ss_pred             HHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch-------h-hHhhhhHHH
Q 007863          334 HVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------D-LLSQSLLPA  401 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-------~-~~~~~~~~~  401 (587)
                      .||.++.++++.+++.++    +.......++.+...++|. |.|-..+++++..+++....       . ...+.+.+.
T Consensus       421 ~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~i  499 (859)
T KOG1241|consen  421 WVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAI  499 (859)
T ss_pred             hhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHH
Confidence            999999999999998775    3444556667777777775 78888888888777754311       0 011122222


Q ss_pred             HHHHhc-----C-CCcHHHHHHHHHHHHHHHhhC----------------------------------------------
Q 007863          402 IVELAE-----D-RHWRVRLAIIEYIPLLASQLG----------------------------------------------  429 (587)
Q Consensus       402 l~~~~~-----~-~~~~vr~~~~~~l~~l~~~~~----------------------------------------------  429 (587)
                      +..+++     | .....|.++.++++.+.+..+                                              
T Consensus       500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L  579 (859)
T KOG1241|consen  500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL  579 (859)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence            222221     1 234566666666666544321                                              


Q ss_pred             --------h--hhHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh-cCCccHHHHHH
Q 007863          430 --------V--GFFDDKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI-NNPHYLYRMTI  495 (587)
Q Consensus       430 --------~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-~~~~~~~r~~a  495 (587)
                              +  ..+.+.++..+++.++. .+.-|.+.|..+++.++..+|..|  +.+.+.|.+..-+ +-.++.|-.++
T Consensus       580 q~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~a  659 (859)
T KOG1241|consen  580 QSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAA  659 (859)
T ss_pred             HHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence                    1  11234567777777766 455678889999999999999886  5688899888777 55678899999


Q ss_pred             HHHHHHhhcccChH--HHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhc---CCC-
Q 007863          496 LQAISLLAPVMGSE--ITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELS---EDP-  565 (587)
Q Consensus       496 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~---~d~-  565 (587)
                      +..++.++..++.+  +|...++..++.+++++  ..+|+-..+.+++-|.-.++.+  .+.+.++|.+....   .|+ 
T Consensus       660 VglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~  739 (859)
T KOG1241|consen  660 VGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPA  739 (859)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCC
Confidence            99999999888776  36788999999999987  5788999999999998888764  77788999988854   233 


Q ss_pred             -------CccHHHHHHHHHHHHHHHhh
Q 007863          566 -------DVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       566 -------~~~Vr~~a~~al~~l~~~~~  585 (587)
                             .-.+|..+.+|+--+.+.+|
T Consensus       740 ~~~~~dYvd~LRe~~leay~gi~qglk  766 (859)
T KOG1241|consen  740 DDSMVDYVDELREGILEAYTGIIQGLK  766 (859)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                   23578999999888877776

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.5e-25  Score=208.56  Aligned_cols=492  Identities=17%  Similarity=0.171  Sum_probs=352.1

Q ss_pred             hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhh----ccCCCHHH
Q 007863           85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPEAL  160 (587)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~----~~~~~~~~  160 (587)
                      ..+..+|.+ ..+++..+|+.+...+.++-..   .++..++.-.+.++...+ ...|..|--++..-    +...+.+.
T Consensus        13 ~ql~~lLk~-s~Spn~~~~~~~~~~leq~~~~---pdfnnYL~~IL~~~~~~d-~~~Rs~aGLlLKNnvr~~~~~~~~~~   87 (885)
T KOG2023|consen   13 QQLAQLLKN-SQSPNSETRNNVQEKLEQFNLF---PDFNNYLIYILIRAKSED-VPTRSLAGLLLKNNVRGHYNSIPSEV   87 (885)
T ss_pred             HHHHHHHHh-ccCCChHHHHHHHHHHHHHhcc---cchhceeeEEEecccccc-hhHHHHhhhhHhccccccccCCChHH
Confidence            333344433 2467888888888777776552   234444444444443333 33355444444332    22334456


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-----
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----  235 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----  235 (587)
                      .+.+..-+...+.|+++.+|....-.+..++...+- ..++.++|.+.+++..++......|..+|.++.+....     
T Consensus        88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~-~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~  166 (885)
T KOG2023|consen   88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGGL-QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSD  166 (885)
T ss_pred             HHHHHHHHHhhccCchHHHHhhhhheeeeeeccccc-ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhh
Confidence            777777888889999999999888888887776544 56699999999999999989999999999998876543     


Q ss_pred             --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                        ..-.+.++|.+.++.+++++++|..|..++..+.-......  ..+.++..+..+.+|++++||+..+.++.-+.+..
T Consensus       167 ~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr  246 (885)
T KOG2023|consen  167 VLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVR  246 (885)
T ss_pred             cccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhc
Confidence              12244588999999999999999999999988764433211  12357788888889999999999999999998875


Q ss_pred             CHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhc----------C-CC----
Q 007863          312 NPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLL----------K-DE----  370 (587)
Q Consensus       312 ~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l----------~-d~----  370 (587)
                      ...  ...+.++.++....+|.++.|-..||+.+..+++.--.    ..+.+.++|++...+          + ++    
T Consensus       247 ~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~  326 (885)
T KOG2023|consen  247 PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDES  326 (885)
T ss_pred             HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcccccc
Confidence            544  45677888889999999999999999999988865421    235567788776432          2 00    


Q ss_pred             -----------------------------------------ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCC
Q 007863          371 -----------------------------------------FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (587)
Q Consensus       371 -----------------------------------------~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~  409 (587)
                                                               +.+.|+-.+.+|..++..+|.+. .+.++|.+.+.+.++
T Consensus       327 vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~el-L~~l~PlLk~~L~~~  405 (885)
T KOG2023|consen  327 VPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDEL-LPILLPLLKEHLSSE  405 (885)
T ss_pred             CCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHH-HHHHHHHHHHHcCcc
Confidence                                                     14578777888888887777554 478899999999999


Q ss_pred             CcHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhh
Q 007863          410 HWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMI  484 (587)
Q Consensus       410 ~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l  484 (587)
                      .|.+|.+.+-++|.+++.+-.  -...+.+.|.++.++.|..+-||.-++-+|++.....-.+   .+...++..+.+.+
T Consensus       406 ~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l  485 (885)
T KOG2023|consen  406 EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL  485 (885)
T ss_pred             hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH
Confidence            999999999999999876522  2234678999999999999999999999888877654322   23344555566667


Q ss_pred             cCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCC---CCccHHHHHHHHHHHHHhhh----chHHHHHhHH
Q 007863          485 NNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKD---RVPNIKFNVAKVLQSLIPIV----DQSVVEKSIR  555 (587)
Q Consensus       485 ~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d---~~~~vR~~a~~~l~~l~~~~----~~~~~~~~i~  555 (587)
                      -|.|.+|+++|+.++..+-+.-+.+  ++.++++..+...++-   ++--+=   ..+++.++...    ....+.+.++
T Consensus       486 lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlIL---YDAIgtlAdsvg~~Ln~~~YiqiLm  562 (885)
T KOG2023|consen  486 LDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLIL---YDAIGTLADSVGHALNKPAYIQILM  562 (885)
T ss_pred             hcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehH---HHHHHHHHHHHHHhcCcHHHHHHhc
Confidence            7889999999999999888776655  3567777776665542   333333   34444444443    3345556666


Q ss_pred             HHHHH---hcCCCCccHHHHHHHHHHHHHHHhhcC
Q 007863          556 PCLVE---LSEDPDVDVRFFATQALQSKDQVMMSG  587 (587)
Q Consensus       556 ~~l~~---l~~d~~~~Vr~~a~~al~~l~~~~~~~  587 (587)
                      |.|.+   +++|+|+++ .-..+++.++++.||++
T Consensus       563 PPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~g  596 (885)
T KOG2023|consen  563 PPLIEKWELLSDSDKDL-FPLLECLSSIASALGVG  596 (885)
T ss_pred             cHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhcc
Confidence            66665   688999887 67889999999999875

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2e-23  Score=199.10  Aligned_cols=571  Identities=17%  Similarity=0.170  Sum_probs=411.0

Q ss_pred             HHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCch-HHHHHHHHHhcccccCcCCcc---hHhhhh
Q 007863           14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDD-EVLLAMAEELGVFIPYVGGLE---YANVLL   88 (587)
Q Consensus        14 l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~-~v~~~~~~~l~~~~~~~~~~~---~~~~l~   88 (587)
                      ++..|+++.+..+..|.+.+..+|...-|...|++|++.|.... +... .++.+..+++|.+++.+....   ....++
T Consensus        95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iL  174 (859)
T KOG1241|consen   95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDIL  174 (859)
T ss_pred             HHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHH
Confidence            45778899999999999999999998889999999999887633 3333 588899999999988665322   223344


Q ss_pred             hHHHhhh--cCchhHHHHHHHHHHHHHHh----hcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhh----ccCCCH
Q 007863           89 PPLETLC--TVEETCVRDKAVESLCRIGS----QMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPE  158 (587)
Q Consensus        89 ~~l~~l~--~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~----~~~~~~  158 (587)
                      ..+.+-.  ..++..||.+|.++|..-.+    .+..+.-+.++++.+.+...+++..++.+|...+..+    ++...+
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~  254 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP  254 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4433332  35688999999999987543    3444555677888888888888888888877644333    444444


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-------------h--------hhHHHHHHHHHHhcc-----
Q 007863          159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------A--------HLKSEIMSIFEELTQ-----  212 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-------------~--------~~~~~i~~~l~~l~~-----  212 (587)
                      -..+.++++....+.+++..|...+++...++++.--+             +        ...+.++|.+.+++.     
T Consensus       255 yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~  334 (859)
T KOG1241|consen  255 YMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDED  334 (859)
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCC
Confidence            45666888888888999999999999999988764211             1        112356777666653     


Q ss_pred             --cCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHH
Q 007863          213 --DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVR  287 (587)
Q Consensus       213 --d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~  287 (587)
                        +++|+.-++|..||.-+++..+++ +.+.++|++.+-++.++|+-|.+++.++|.+...-.+..   .....+|.+..
T Consensus       335 ~d~DdWnp~kAAg~CL~l~A~~~~D~-Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~  413 (859)
T KOG1241|consen  335 DDDDDWNPAKAAGVCLMLFAQCVGDD-IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN  413 (859)
T ss_pred             cccccCcHHHHHHHHHHHHHHHhccc-chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH
Confidence              235788899999999888877655 677999999999999999999999999999876433211   12357888999


Q ss_pred             hcCCChHHHHHHHHHhHHHHHHhhCH----HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch-----------
Q 007863          288 LLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-----------  352 (587)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-----------  352 (587)
                      +..|+.-.||..+..+|+++++.+..    +.+....++.+...++| .++|-..+|+++..+++....           
T Consensus       414 lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~  492 (859)
T KOG1241|consen  414 LMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPA  492 (859)
T ss_pred             HhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence            99999999999999999999997653    34445566666666655 567777788887777754421           


Q ss_pred             HHHHHhHHHHHHHhcC--C-CChHHHHHHHHHhHHhhhhhch--------------------------------------
Q 007863          353 DATIEQLLPIFLSLLK--D-EFPDVRLNIISKLDQVNQVIGI--------------------------------------  391 (587)
Q Consensus       353 ~~~~~~l~~~l~~~l~--d-~~~~vr~~a~~~l~~i~~~~~~--------------------------------------  391 (587)
                      ..+.+.++..+++...  | .+.+.|.++.++|.++++....                                      
T Consensus       493 t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQ  572 (859)
T KOG1241|consen  493 TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQ  572 (859)
T ss_pred             chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHH
Confidence            0122222222322211  2 3467888888888877654321                                      


Q ss_pred             ------------------hhHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHc-CCCc
Q 007863          392 ------------------DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKV  449 (587)
Q Consensus       392 ------------------~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~  449 (587)
                                        ....+.++..+.+.++. ++..+...++-.++.++..+|..+  +.+.+.|.+...+ +-.+
T Consensus       573 s~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e  652 (859)
T KOG1241|consen  573 SLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE  652 (859)
T ss_pred             HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH
Confidence                              01223455555555555 445567778888888888888765  3467888888888 5567


Q ss_pred             hHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc--cHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhc
Q 007863          450 YSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINAS  523 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l  523 (587)
                      ..|-..|+...|.+++.++.++  +.+.++..+.+.+.+++  ..++-..+.+++.|+-.+|.+  .|.+.++|.+....
T Consensus       653 ~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as  732 (859)
T KOG1241|consen  653 YQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS  732 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            8899999999999999999886  56788888888888874  457888999999999888875  46788888887765


Q ss_pred             ---CCC--------CccHHHHHHHHHHHHHhhhch-------HHHHHhHHHHHHHhcCCCCc--cHHHHHHHHHHHHHHH
Q 007863          524 ---KDR--------VPNIKFNVAKVLQSLIPIVDQ-------SVVEKSIRPCLVELSEDPDV--DVRFFATQALQSKDQV  583 (587)
Q Consensus       524 ---~d~--------~~~vR~~a~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~~d~~~--~Vr~~a~~al~~l~~~  583 (587)
                         .|+        ...+|.+++++...+...++.       .++...++..+.....|++-  .+...|...++.++.+
T Consensus       733 ~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~  812 (859)
T KOG1241|consen  733 SVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATM  812 (859)
T ss_pred             hccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence               222        346999999999999888763       14556666666666665544  4677788889999998


Q ss_pred             hhc
Q 007863          584 MMS  586 (587)
Q Consensus       584 ~~~  586 (587)
                      +|+
T Consensus       813 fg~  815 (859)
T KOG1241|consen  813 FGK  815 (859)
T ss_pred             ccc
Confidence            885

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.94  E-value=7.5e-22  Score=192.32  Aligned_cols=566  Identities=14%  Similarity=0.183  Sum_probs=377.8

Q ss_pred             HHHHHhcCccHHHHHHHhhcHHHHH----HHhChhhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhhh
Q 007863           13 VLIDELKNDDIQLRLNSIRRLSTIA----RALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVL   87 (587)
Q Consensus        13 ~l~~~l~s~d~~~R~~a~~~l~~~~----~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l   87 (587)
                      .++++|.|+|.+.|++|-..|.+=.    ..++-+.. ..++..+.+ +-|.++||+..+.+++|-+...++... ...+
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe-~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~-le~~   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSE-RKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQ-LETI   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccch-hHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHH-HHHH
Confidence            7889999999999999987775321    22222222 233333333 335688999999999999988777332 3333


Q ss_pred             hhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh-------hhHhhhhHHHHHHhhc--CCCCcchhhHHhhhhhhccCCCH
Q 007863           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMRE-------QDVVEHFIPLVKRLAA--GEWFTARVSSCGLFHVAYPSAPE  158 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-------~~~~~~ll~~~~~l~~--~~~~~~r~~a~~l~~~~~~~~~~  158 (587)
                      ..-|..-+-+.....|..+.-.|.....+++|       ..+...++|.+.....  .+.+.++..++.+++....+.+.
T Consensus        87 ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~  166 (1233)
T KOG1824|consen   87 VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT  166 (1233)
T ss_pred             HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc
Confidence            33332222345667788888888888877775       2234456666655432  33566888888887776555442


Q ss_pred             ---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863          159 ---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       159 ---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                         +....++..+...+..+...||+.++.+|+.++...+...+...+...+..+.+..++..-+..+.+++.++...+.
T Consensus       167 ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~  246 (1233)
T KOG1824|consen  167 LLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH  246 (1233)
T ss_pred             cCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc
Confidence               36667777777777888889999999999999999988777776666777777766666666778888888877765


Q ss_pred             --hhhhhchHHHHHHhc---CCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcC------------------
Q 007863          236 --QDCVAHILPVIVNFS---QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR------------------  290 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~---~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~------------------  290 (587)
                        ....+.+.|.+.+.+   +..+.+.|+.++++++.+....+.+.  .+++++..+.+.+.                  
T Consensus       247 r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~  326 (1233)
T KOG1824|consen  247 RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL  326 (1233)
T ss_pred             hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence              334677899999888   67788999999999999988766543  23344444444331                  


Q ss_pred             ----------------CChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch
Q 007863          291 ----------------DNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK  352 (587)
Q Consensus       291 ----------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                                      |..|.||++|++++..+......  ..+...+-|.+...+++..+.||.-.+.++..+..+.+.
T Consensus       327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~  406 (1233)
T KOG1824|consen  327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP  406 (1233)
T ss_pred             hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence                            23488999999999887664221  123344555555555666666665555554443322210


Q ss_pred             --------H---------------HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh-----------------------
Q 007863          353 --------D---------------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN-----------------------  386 (587)
Q Consensus       353 --------~---------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~-----------------------  386 (587)
                              +               .....++..+.+.+++.+...|..++..|..++                       
T Consensus       407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~  486 (1233)
T KOG1824|consen  407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLN  486 (1233)
T ss_pred             CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcC
Confidence                    0               001123333333344433334444444444433                       


Q ss_pred             --------------------hhhchhhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---------hhhHH
Q 007863          387 --------------------QVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---------VGFFD  434 (587)
Q Consensus       387 --------------------~~~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---------~~~~~  434 (587)
                                          ..-+++.+   .+.+.|.+.....|+.+++-.+++.....+++.+-         ...+.
T Consensus       487 DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v  566 (1233)
T KOG1824|consen  487 DKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYV  566 (1233)
T ss_pred             CccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhH
Confidence                                22233322   23455666666788999999999999888887652         22233


Q ss_pred             HHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc---ccC
Q 007863          435 DKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP---VMG  507 (587)
Q Consensus       435 ~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~  507 (587)
                      ..+....++.+  +|.+.+||+.|+.++|.++..+|...  .....+|.+.+.++  +...|.+|++++..++.   .+.
T Consensus       567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~  644 (1233)
T KOG1824|consen  567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDID  644 (1233)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceee
Confidence            44444444444  57889999999999999999998431  23445555555553  56789999999999876   334


Q ss_pred             hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          508 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ......+++|.+..++.......|.+.+.++..+.+.++.   ....+.++..+..+.+++|-.|-..|...+..+..
T Consensus       645 l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~  722 (1233)
T KOG1824|consen  645 LSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAI  722 (1233)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            4456788999999999888889999999999999887754   34556677777778999999999988888877654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=1.1e-21  Score=212.40  Aligned_cols=560  Identities=14%  Similarity=0.136  Sum_probs=400.1

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhh---hhhhhccccccccC--CchHHHHHHHHHhcccccCcCCcchH
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEER---TRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGLEYA   84 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~---~~~~l~p~l~~~~~--~~~~v~~~~~~~l~~~~~~~~~~~~~   84 (587)
                      -+..+++.|.++++..+..|+..+..++...+...   .....+|.+.+.+.  ++..+|..++.+|++++..  +.++.
T Consensus       190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~--s~e~r  267 (2102)
T PLN03200        190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ--SKEAK  267 (2102)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC--CHHHH
Confidence            46788899999999999999887766654322111   12334666666553  3458999999999888752  22322


Q ss_pred             h-----hhhhHHHhhhcCch---------hHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-CCcchhhHHhhh
Q 007863           85 N-----VLLPPLETLCTVEE---------TCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLF  149 (587)
Q Consensus        85 ~-----~l~~~l~~l~~~~~---------~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~  149 (587)
                      .     ..+|.|..++..++         ...++.|+.+|++++...      ..++|++.+..++. +......++..+
T Consensus       268 ~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~~ada~gAL  341 (2102)
T PLN03200        268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAPIADTLGAL  341 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHHHHHHHhhH
Confidence            2     22345555444333         456899999999999864      45777887766554 222233344455


Q ss_pred             hhhcc---CCCHHHH----HHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHH
Q 007863          150 HVAYP---SAPEALK----TELRTIYRQLCQDDMPM-VRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVR  219 (587)
Q Consensus       150 ~~~~~---~~~~~~~----~~l~~~l~~l~~~~~~~-vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr  219 (587)
                      ..+..   ...+...    ..+.+.+..++.++++. ++..+.++|..++.+..-  --......+.+..++...+.+++
T Consensus       342 ayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ  421 (2102)
T PLN03200        342 AYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQ  421 (2102)
T ss_pred             HHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHH
Confidence            44422   2211111    13457788999988766 477788887554332211  11123456678888888888999


Q ss_pred             HHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCCh
Q 007863          220 LLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNE  293 (587)
Q Consensus       220 ~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~  293 (587)
                      ..++.++..+...-..   .......+|.+.+++.+.+..+|..++..++.++..-..   .......+|.+.+++..++
T Consensus       422 ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~  501 (2102)
T PLN03200        422 EELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS  501 (2102)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence            9999999998865332   112344789999999999999999999999988752111   1122468999999999999


Q ss_pred             HHHHHHHHHhHHHHHHhhCHH--H-H-HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC
Q 007863          294 AEVRIAAAGKVTKICRILNPE--L-A-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD  369 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~--~-~-~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  369 (587)
                      ..+|+.|+.++++++.. +++  . . ....+|.+.+++++.+++++..++.++..+......+     .++.+..++..
T Consensus       502 ~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~Lv~LLls  575 (2102)
T PLN03200        502 QKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQLTALLLG  575 (2102)
T ss_pred             HHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHHHHHHhcC
Confidence            99999999999999874 221  1 1 2357888999999999999999999999997543322     23556677888


Q ss_pred             CChHHHHHHHHHhHHhhhhhchhhH------hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHH
Q 007863          370 EFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGAL  440 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~  440 (587)
                      +++.++..++..++.+......+..      ....+|.+.+++++++.++++.++..+..++..-.   ........+|.
T Consensus       576 dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP  655 (2102)
T PLN03200        576 DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP  655 (2102)
T ss_pred             CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence            8899999999999888765443321      13578999999999999999999999988875321   11223456888


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--HHHHh
Q 007863          441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQ  514 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~  514 (587)
                      ++.++++.+.++++.++.+|+.+......+.    .....+|.+.+++++++..++..++.++.++...-...  .....
T Consensus       656 LV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~  735 (2102)
T PLN03200        656 CIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAED  735 (2102)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcC
Confidence            8899999999999999999999996333221    23568999999999999999999999999999754322  23467


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHH------HHHhHHHHHHHhcCCCCccHHHH--HHHHHHHHHHH
Q 007863          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSV------VEKSIRPCLVELSEDPDVDVRFF--ATQALQSKDQV  583 (587)
Q Consensus       515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~------~~~~i~~~l~~l~~d~~~~Vr~~--a~~al~~l~~~  583 (587)
                      .++.+.+++.+.++..|.+|+.+|.+++...+.+.      .....+..|..+++..|.++-..  |..+++.+++.
T Consensus       736 ~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~  812 (2102)
T PLN03200        736 IILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART  812 (2102)
T ss_pred             cHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence            78999999999999999999999999998876543      22345677777777777776665  88888888774

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.92  E-value=2.1e-21  Score=180.85  Aligned_cols=559  Identities=18%  Similarity=0.251  Sum_probs=382.7

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCch-H-HHHHHHHHhccccc----Cc----
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDD-E-VLLAMAEELGVFIP----YV----   78 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~-~-v~~~~~~~l~~~~~----~~----   78 (587)
                      .+..++-..++..+..|..+++.|..-+..+|++-..+.++|.+.+ .+++.+ + +...+-+.|..+..    ++    
T Consensus       169 ~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~lddl~~pyvhkIL  248 (975)
T COG5181         169 DVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLDDLKVPYVHKIL  248 (975)
T ss_pred             hHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcccccccceeeEE
Confidence            3566778889999999999999999999999999999999998876 344432 2 22233333332211    11    


Q ss_pred             ---C----Ccch-----Hhh-hhhH------------HHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHh
Q 007863           79 ---G----GLEY-----ANV-LLPP------------LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL  133 (587)
Q Consensus        79 ---~----~~~~-----~~~-l~~~------------l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l  133 (587)
                         |    +++.     -+. +..+            +.--+.+.|+.||+...++.+.+++.++-    +.++||+..+
T Consensus       249 vVv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrpDi~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~  324 (975)
T COG5181         249 VVVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRPDITSKDEYVRNVTGRAVGVVADALGV----EELLPFLEAL  324 (975)
T ss_pred             EEeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccCCcccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHH
Confidence               0    0110     011 1111            11112567899999999999999999874    5789999999


Q ss_pred             hcCC-CCcchhhHHhhhhhhccCCC---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHH
Q 007863          134 AAGE-WFTARVSSCGLFHVAYPSAP---EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSI  206 (587)
Q Consensus       134 ~~~~-~~~~r~~a~~l~~~~~~~~~---~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~  206 (587)
                      +.+. .|..|..++.+...++..++   -.+...++.++..++.|....||..++.++..+++..++   +.+...+.|+
T Consensus       325 c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pL  404 (975)
T COG5181         325 CGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPL  404 (975)
T ss_pred             hcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHH
Confidence            9887 77778777776655544333   246778889999999999999999999999999998765   3444444554


Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccCh----------------------hhhhhchHHHHHHh---cCCCchHHHHHH
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEP----------------------QDCVAHILPVIVNF---SQDKSWRVRYMV  261 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------------------~~~~~~l~~~l~~~---~~d~~~~vR~~a  261 (587)
                      ....-++... .-.+...+.+.+....++                      ++..+.++-....+   -.+..|..|...
T Consensus       405 w~g~~~hrgk-~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v  483 (975)
T COG5181         405 WEGASQHRGK-ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQV  483 (975)
T ss_pred             HHHHHhcCCc-hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhh
Confidence            4333322211 111222222222222221                      12222222222221   234566666554


Q ss_pred             H-HHHHHHHHHh--CC----------------CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------
Q 007863          262 A-NQLYELCEAV--GP----------------EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------  313 (587)
Q Consensus       262 ~-~~l~~l~~~~--~~----------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------  313 (587)
                      . +.+..+...-  +.                ......+..-+...++|+..--|+.++.+...+...+|.         
T Consensus       484 ~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErlee  563 (975)
T COG5181         484 SPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEE  563 (975)
T ss_pred             cHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHH
Confidence            3 3333332210  10                011233555566666777666677666666555554431         


Q ss_pred             -----------------------------------HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh---chHHH
Q 007863          314 -----------------------------------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL---GKDAT  355 (587)
Q Consensus       314 -----------------------------------~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~  355 (587)
                                                         +.+...++..+.++++++.+.||..+++..+.++..+   |....
T Consensus       564 rl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~  643 (975)
T COG5181         564 RLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKE  643 (975)
T ss_pred             HHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHH
Confidence                                               1223446666778889999999999999988887655   44455


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 007863          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  432 (587)
                      ..++-..+...+....++|--..+.++..|....+-..+   ...++|.+...+.+++.++....+..++.++...+.-.
T Consensus       644 l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi  723 (975)
T COG5181         644 LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI  723 (975)
T ss_pred             HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC
Confidence            566777788888899999999999999998877664421   24678888888899999999999999999887543211


Q ss_pred             HHHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH
Q 007863          433 FDDKLGALC---MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       433 ~~~~l~~~l---~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      -....+.++   +..+...+.++|..|...+|.+.+..|+.    .++..+++.+...+.+.|....-+|+.+++.+|+-
T Consensus       724 ~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf  799 (975)
T COG5181         724 GVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF  799 (975)
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch
Confidence            123344444   44567889999999999999999999975    46667777777778888999999999999988875


Q ss_pred             HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          510 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                          .++|.+..-...|..+|....++++..+.+.++..  .+.-.+.|.|...+.|.|+.-|..|...+..+.
T Consensus       800 ----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~  869 (975)
T COG5181         800 ----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV  869 (975)
T ss_pred             ----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence                68899988889999999999999999999998874  566788999999999999999999988876653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.92  E-value=1.4e-20  Score=204.04  Aligned_cols=562  Identities=11%  Similarity=0.076  Sum_probs=396.5

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHh--Chhh----hhhhhccccccccCC----chHHHHHHHHHhcccccCcC
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARAL--GEER----TRKELIPFLSENNDD----DDEVLLAMAEELGVFIPYVG   79 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~--~~~~----~~~~l~p~l~~~~~~----~~~v~~~~~~~l~~~~~~~~   79 (587)
                      .+..|+.-|++.++..|..|+..|..++..-  +...    .....+|.|...+.+    +.-++..++.+|.+++..-+
T Consensus       100 aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~e  179 (2102)
T PLN03200        100 CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD  179 (2102)
T ss_pred             ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCcc
Confidence            3556778888989999999999999887532  1100    113345655554332    22345566677777765433


Q ss_pred             Ccc---hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh---hhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhh
Q 007863           80 GLE---YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVA  152 (587)
Q Consensus        80 ~~~---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~  152 (587)
                      +..   .....+|.+..+++++++.++..|+.++..++...+.   .-+....+|.+.++..++ +..+|..|+..+..+
T Consensus       180 n~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nL  259 (2102)
T PLN03200        180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEAL  259 (2102)
T ss_pred             chHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence            211   1234677888888899999999999999888766432   123456788888888654 557888888888887


Q ss_pred             ccCCCHH----HHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhH
Q 007863          153 YPSAPEA----LKTELRTIYRQLCQDDM---------PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSV  218 (587)
Q Consensus       153 ~~~~~~~----~~~~l~~~l~~l~~~~~---------~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~v  218 (587)
                      ....++.    .....+|.+..++..++         ...++.+..+|++++...      ..+++.+.+.+++. +..+
T Consensus       260 As~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~------~~ll~~L~~ll~s~rd~~~  333 (2102)
T PLN03200        260 SSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGM------SALILYLGELSESPRSPAP  333 (2102)
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCc------hhhHHHHHHhhcccchHHH
Confidence            7654332    12234566666665443         446889999999988543      45788887777665 3333


Q ss_pred             HHHHHHHHHHHhcccChhh-----h-hhchHHHHHHhcCCCchH-HHHHHHHHHHHHHHHh--CCCCcccchHHHHHHhc
Q 007863          219 RLLAVEGCGALGKLLEPQD-----C-VAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAV--GPEPTRSDVVPAYVRLL  289 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~~~-----~-~~~l~~~l~~~~~d~~~~-vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l  289 (587)
                      ...++.++..+...+....     + ...+.+.+.+++.++++. +...+..+|..+..+.  .......+..+.++.++
T Consensus       334 ~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL  413 (2102)
T PLN03200        334 IADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLI  413 (2102)
T ss_pred             HHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhh
Confidence            3445555655544333211     1 124568899999988665 4777777764432111  00111346788899999


Q ss_pred             CCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHH
Q 007863          290 RDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIF  363 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l  363 (587)
                      ...+.+++..++.+|..++..-...   ......+|.+.+++.+.+..+|..++..++.++..-...   ......+|.+
T Consensus       414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~L  493 (2102)
T PLN03200        414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPL  493 (2102)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence            9888999999999999998642111   223447899999999999999999999999987533211   1234578999


Q ss_pred             HHhcCCCChHHHHHHHHHhHHhhhhhch-h-hH-hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 007863          364 LSLLKDEFPDVRLNIISKLDQVNQVIGI-D-LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  440 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~-~-~~-~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  440 (587)
                      .++|..++..+|..|++++++++..-.. . .+ ....+|.+.+++++.+++++..++..+..+......+     .++.
T Consensus       494 V~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-----~I~~  568 (2102)
T PLN03200        494 VQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-----TISQ  568 (2102)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh-----HHHH
Confidence            9999999999999999999999864211 1 12 2367899999999999999999999999887643332     2344


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhChhhh------hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHH
Q 007863          441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA------MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EIT  511 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~------~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~  511 (587)
                      +..++...+..++..++..++.+......+.+      ....+|.+.+++.+++..++..|++++.+++..-..   ...
T Consensus       569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv  648 (2102)
T PLN03200        569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLA  648 (2102)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            55677788889999999999998764443321      245789999999999999999999999999873322   234


Q ss_pred             HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ....+|.++.++.+.+..+|..++.+|+.+.......    .....++|.|.+++++.+.+++..|..||+.+.+
T Consensus       649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~  723 (2102)
T PLN03200        649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS  723 (2102)
T ss_pred             HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence            5678899999999999999999999999998644332    2335678899999999999999999999998875

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.92  E-value=3.7e-20  Score=176.15  Aligned_cols=529  Identities=16%  Similarity=0.163  Sum_probs=273.5

Q ss_pred             hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-C-CchHHHHHHHHHhcccccCcCC--cchHhhhhhHHHh
Q 007863           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYVGG--LEYANVLLPPLET   93 (587)
Q Consensus        18 l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~~~~~~~~--~~~~~~l~~~l~~   93 (587)
                      +.+.|+-+|....++++.++.++|.    +.|+|||+..- + .+.+.|+.-.++...++.+.|-  -.|...++.++..
T Consensus       485 idn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~  560 (1172)
T KOG0213|consen  485 IDNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH  560 (1172)
T ss_pred             cccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence            4467899999999999999999886    57889887632 2 2445554444444444433332  1355667888889


Q ss_pred             hhcCchhHHHHHHHHHHHHHHhhcCh---hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH----HHHHHHH
Q 007863           94 LCTVEETCVRDKAVESLCRIGSQMRE---QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRT  166 (587)
Q Consensus        94 l~~~~~~~vr~~a~~~l~~l~~~~~~---~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~----~~~~l~~  166 (587)
                      .+.|+...||-.++.++..+++..+|   +.+...+-|+-.....+- -....+-...++.+++...++    +-.+++-
T Consensus       561 gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hr-gk~laafLkAigyliplmd~eya~yyTrevml  639 (1172)
T KOG0213|consen  561 GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHR-GKELAAFLKAIGYLIPLMDAEYASYYTREVML  639 (1172)
T ss_pred             hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc-ChHHHHHHHHHhhccccccHHHHHHhHHHHHH
Confidence            99999999999999999999988665   334444444433332221 111122223444444444333    1123333


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh--hhH---------------------------------------HHHHH
Q 007863          167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLK---------------------------------------SEIMS  205 (587)
Q Consensus       167 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~---------------------------------------~~i~~  205 (587)
                      ++..-.++++.+.++..++.+...+..-+-+  ...                                       ..++.
T Consensus       640 il~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~  719 (1172)
T KOG0213|consen  640 ILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVS  719 (1172)
T ss_pred             HHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHH
Confidence            3344445555555555555555544432210  000                                       11222


Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHhcccChh----hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCccc
Q 007863          206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRS  279 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~  279 (587)
                      -...-+.|+.+..|+...+....+...++..    ...+.++.-++-.++..+.... ..+..++.+...++.  ..+.+
T Consensus       720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylp  798 (1172)
T KOG0213|consen  720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLP  798 (1172)
T ss_pred             HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchH
Confidence            2333456677888888888888887776641    1222333333333332222221 234455555555554  33334


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--
Q 007863          280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--  354 (587)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--  354 (587)
                      .++..+...++++.+.||..|+..++.++..+   +.+.....+-..+.+.+....+.|--..+.++..+....|-..  
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence            45555555666666666666666666655433   2333333333334445555555555555555555554443111  


Q ss_pred             -HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh----chhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 007863          355 -TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       355 -~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~  429 (587)
                       -...++|.+...|+.....|+..++..++.|+..-    +..++..... -+.+++...+..+|.++...++.+++.+|
T Consensus       879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcf-eLlelLkahkK~iRRaa~nTfG~IakaIG  957 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICF-ELLELLKAHKKEIRRAAVNTFGYIAKAIG  957 (1172)
T ss_pred             CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence             12345555555556656666666665555555321    2222221111 12233444555566666666666666665


Q ss_pred             hhhHHH-------------------------------HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhch
Q 007863          430 VGFFDD-------------------------------KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHI  476 (587)
Q Consensus       430 ~~~~~~-------------------------------~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~  476 (587)
                      +..+..                               .++|.+++--.-+...|+...+++++.+.+..|.-.  +...+
T Consensus       958 PqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav 1037 (1172)
T KOG0213|consen  958 PQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAV 1037 (1172)
T ss_pred             HHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHh
Confidence            532211                               134444444444555555555555555555444321  23444


Q ss_pred             HHHHHhhhcCCccHHHHHHHHHHHHhhc---ccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHh
Q 007863          477 VPQVLEMINNPHYLYRMTILQAISLLAP---VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS  553 (587)
Q Consensus       477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~---~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  553 (587)
                      .|.+.+.+.|.+...|+.|..++.+++-   ..|.+...-+++..+....-+++|.+-+....++..+...+++..+.++
T Consensus      1038 ~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y 1117 (1172)
T KOG0213|consen 1038 TPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKY 1117 (1172)
T ss_pred             hHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            5555555555555555555555555543   2233344444555555445555555555555555555555554444333

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=2.4e-20  Score=176.29  Aligned_cols=465  Identities=16%  Similarity=0.124  Sum_probs=348.6

Q ss_pred             hhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCH--HHHHHH
Q 007863           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPE--ALKTEL  164 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~--~~~~~l  164 (587)
                      ++++.....|+.+.+|..-.++...+....+.+... .+.|...+..++. +...|.....+.+....+...  .....+
T Consensus        19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~~~~~~v~-~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~   97 (569)
T KOG1242|consen   19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQHGDQNVL-NLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISI   97 (569)
T ss_pred             ceeecccCCCcchhhHHhHHHHHHHHHHhhhHHHHH-HHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchhHH
Confidence            334444447888899998888888888877765543 4667666655544 555666666666666655532  245567


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhh-hhhchH
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-CVAHIL  243 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~  243 (587)
                      +..+..-+.-+++.+|++...++..+...... .....+.+.+.++++.....-|..+...+..+....+-+. ....++
T Consensus        98 ~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~-~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l  176 (569)
T KOG1242|consen   98 IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG-LSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFL  176 (569)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc-cCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHH
Confidence            77788888889999999999999998776644 3445677777778887777788888888877766555432 234577


Q ss_pred             HHHHHhcCCCchHH-HHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863          244 PVIVNFSQDKSWRV-RYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  320 (587)
Q Consensus       244 ~~l~~~~~d~~~~v-R~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  320 (587)
                      ..+.+...|+.... |+.+..++......+|+..  +.-.++|.+...+.|....||.+|..+...+...+....+ +.+
T Consensus       177 ~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~l  255 (569)
T KOG1242|consen  177 DNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KLL  255 (569)
T ss_pred             HHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hHh
Confidence            78888888875544 4457777777777777532  2234667777777899999999999999999998877654 455


Q ss_pred             HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863          321 LPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~  398 (587)
                      +|.+..-+.+..|+.+.++++.++.++.+.+.  +...+.++|.+...+.|..++||.++..++..++..+.+.++ +.+
T Consensus       256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~  334 (569)
T KOG1242|consen  256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKI  334 (569)
T ss_pred             hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHH
Confidence            55555545555999999999999988877653  346788999999999999999999999999999999988775 679


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHH--HHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh-hh---h
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPL--LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-DW---A  472 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~--l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~---~  472 (587)
                      +|.+.+.+.|++..+.... ..++.  ++..+.. ....-++|++.+.+.+.+...+..++..++.++..... .+   |
T Consensus       335 ip~Lld~l~dp~~~~~e~~-~~L~~ttFV~~V~~-psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf  412 (569)
T KOG1242|consen  335 IPTLLDALADPSCYTPECL-DSLGATTFVAEVDA-PSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF  412 (569)
T ss_pred             HHHHHHHhcCcccchHHHH-Hhhcceeeeeeecc-hhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence            9999999999986654432 22211  1111111 22467899999999999999999999999999998733 22   5


Q ss_pred             hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCC-CccHHHHHHHHHHHHHhhhchHHHH
Q 007863          473 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQSVVE  551 (587)
Q Consensus       473 ~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~  551 (587)
                      ...++|.+...+.|+.+.+|..+.++++.+.+..|...+ ....|.+...+++. ...-|..++..+..+...++.+.+.
T Consensus       413 l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~  491 (569)
T KOG1242|consen  413 LPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE  491 (569)
T ss_pred             HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH
Confidence            678888888889999999999999999999998887755 88889998888765 5667889999999998887766553


Q ss_pred             HhHHHHHHH
Q 007863          552 KSIRPCLVE  560 (587)
Q Consensus       552 ~~i~~~l~~  560 (587)
                       .++|.+..
T Consensus       492 -~~~~~~~a  499 (569)
T KOG1242|consen  492 -DILPEILA  499 (569)
T ss_pred             -HHHHHHHH
Confidence             44554444

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.90  E-value=3.7e-20  Score=189.49  Aligned_cols=405  Identities=16%  Similarity=0.181  Sum_probs=305.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHhcccCchhHHHHHHHHHHHHhcccChh
Q 007863          158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSE-IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ  236 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~-i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                      ++..+.+.+.+..++.|++|.||+.|+-++..+....++  ..+. +.+.+.+++.|+++.|+..|+.++..+  ...++
T Consensus       109 ~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~  184 (526)
T PF01602_consen  109 PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDD  184 (526)
T ss_dssp             HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHH
T ss_pred             cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcc
Confidence            445566777778888899999999999999999887543  3222 788888899999999999999998888  22222


Q ss_pred             ---hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcc--cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863          237 ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR--SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       237 ---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                         ...+.+...+.+.+.+.++..+..+++.+..++....  ...  ..+++.+..++++.++.|+..|++++..+... 
T Consensus       185 ~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~--~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-  261 (526)
T PF01602_consen  185 SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEP--EDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-  261 (526)
T ss_dssp             HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-
T ss_pred             hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCCh--hhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-
Confidence               2344556666666688888899888888776543211  112  35788888888888899999999888866442 


Q ss_pred             CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch
Q 007863          312 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  391 (587)
Q Consensus       312 ~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  391 (587)
                        ......+++.+.+++.++++.+|..+++.+..++....+.  .......+..+..+++..+|..++..+..++..-. 
T Consensus       262 --~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~--v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n-  336 (526)
T PF01602_consen  262 --PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA--VFNQSLILFFLLYDDDPSIRKKALDLLYKLANESN-  336 (526)
T ss_dssp             --HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH--HGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHH-
T ss_pred             --hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh--hhhhhhhhheecCCCChhHHHHHHHHHhhcccccc-
Confidence              2245778889999999999999999999999998665222  12322334444558889999999999988875432 


Q ss_pred             hhHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863          392 DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  470 (587)
Q Consensus       392 ~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                         ...+++.+...+.+ .+..+|..++..++.++..+...  .+.+++.+++++......+...++..+..+.......
T Consensus       337 ---~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~  411 (526)
T PF01602_consen  337 ---VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL  411 (526)
T ss_dssp             ---HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred             ---hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh
Confidence               24577777777744 47889999999999999887543  4667888899998888888999999999888764332


Q ss_pred             hhhhchHHHHHhhhcC-CccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863          471 WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       471 ~~~~~~~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                        ...++..+.+.+.+ .+...+.++++.+|..+...+. + ....++..+.+...+.++.+|..++.++..+....+..
T Consensus       412 --~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~  488 (526)
T PF01602_consen  412 --REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN  488 (526)
T ss_dssp             --HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST
T ss_pred             --hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch
Confidence              35567777777665 4567899999999999987765 3 45677888888888888999999999999999887655


Q ss_pred             HHHHhHHHHHHHhcC--CCCccHHHHHHHHHHHHHH
Q 007863          549 VVEKSIRPCLVELSE--DPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~--d~~~~Vr~~a~~al~~l~~  582 (587)
                      ...+.+.+.+..+..  |.+++||.+|..-+.-+..
T Consensus       489 ~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~  524 (526)
T PF01602_consen  489 EVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS  524 (526)
T ss_dssp             THHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence            555688888888887  8899999999988776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=1.6e-19  Score=170.75  Aligned_cols=520  Identities=16%  Similarity=0.146  Sum_probs=368.9

Q ss_pred             cccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhc-CchhHHHHHHHHHHHHHHhhcChhhHhhhhH
Q 007863           50 IPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMREQDVVEHFI  127 (587)
Q Consensus        50 ~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll  127 (587)
                      ++++.. -.|....|+..+.++....... .|.+....+.|...+.++ +.+..+|+......+.++.++...+-  ...
T Consensus        19 ~~~~~~~g~d~~~~v~~~ml~a~~~~~~~-~~~~~v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~--~~~   95 (569)
T KOG1242|consen   19 LLFLVSAGEDRRIDVRGNMLEAGEAAINQ-HGDQNVLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDP--RPI   95 (569)
T ss_pred             ceeecccCCCcchhhHHhHHHHHHHHHHh-hhHHHHHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCc--chh
Confidence            455443 2345567777776664333222 334556677777766544 56888999888888888887654332  223


Q ss_pred             HHHHHhh---cCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhh-HHHH
Q 007863          128 PLVKRLA---AGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL-KSEI  203 (587)
Q Consensus       128 ~~~~~l~---~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~-~~~i  203 (587)
                      +++..+.   ......++.+....+..............+.+.+.+++......-|..+...+..+....+.+.. ...+
T Consensus        96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~  175 (569)
T KOG1242|consen   96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGF  175 (569)
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhH
Confidence            3333332   22234444444444444433333445667788888888888888899999888888876655433 3446


Q ss_pred             HHHHHHhcccCchhH-HHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc
Q 007863          204 MSIFEELTQDDQDSV-RLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  280 (587)
Q Consensus       204 ~~~l~~l~~d~~~~v-r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  280 (587)
                      +..+.+...|....- |..+..+.......+++  +.+.-.++|.+.....|....||.++..+...+...+..... +.
T Consensus       176 l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~  254 (569)
T KOG1242|consen  176 LDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV-KL  254 (569)
T ss_pred             HHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh-hH
Confidence            777777888876544 44566666666666664  445556777788888899999999999999998887765443 34


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHh
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ  358 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  358 (587)
                      ++|.+...+.+..|+-+.+++..++.++...+..  ...+.++|.+.+.+.|..+.||.++..++..++....... .+.
T Consensus       255 llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~  333 (569)
T KOG1242|consen  255 LLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK  333 (569)
T ss_pred             hhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH
Confidence            5555555555559999999999999888876654  4568899999999999999999999999999998887655 567


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHhHH--hhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hh---h
Q 007863          359 LLPIFLSLLKDEFPDVRLNIISKLDQ--VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG---F  432 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~--i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~---~  432 (587)
                      ++|.+...+.|++..+... ...|+.  +...+... -...++|.+.+-+.+++..++..++..++.++.... +.   .
T Consensus       334 ~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~p-sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lap  411 (569)
T KOG1242|consen  334 IIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDAP-SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAP  411 (569)
T ss_pred             HHHHHHHHhcCcccchHHH-HHhhcceeeeeeecch-hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhh
Confidence            8899999999987555432 222221  22222222 236789999999999999999999999999998873 22   3


Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChHHH
Q 007863          433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSEIT  511 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~  511 (587)
                      |.+.++|-+...+.|..+++|..+..+|+.+.+..|...+ +..+|.+.+...+. ...-|..++..+..+....+.+ .
T Consensus       412 fl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~-~  489 (569)
T KOG1242|consen  412 FLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVE-K  489 (569)
T ss_pred             hHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhcccch-H
Confidence            4567888888889999999999999999999999998866 88999999887665 4567889999999998888876 4


Q ss_pred             HHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007863          512 CSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQ  578 (587)
Q Consensus       512 ~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~  578 (587)
                      ...++|.+......  ..+.+|...+..+..+-...+.  ..+...+++.+.+-+.|.++.+|..+.++=.
T Consensus       490 ~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~~~~~  560 (569)
T KOG1242|consen  490 VEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTALEAGE  560 (569)
T ss_pred             HHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchhhhhh
Confidence            56666666655443  3455887777766655333332  3566677888888777999999988877643

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.89  E-value=5e-19  Score=165.23  Aligned_cols=553  Identities=16%  Similarity=0.165  Sum_probs=362.7

Q ss_pred             hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhc
Q 007863           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT   96 (587)
Q Consensus        18 l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~   96 (587)
                      +.+.|...|...-+.+..++...|-..    .+..+.- ....++-||...+++.+.++..+|    .+.++|+|..++.
T Consensus       255 lided~~~r~~g~eii~nL~~~~Gl~~----~vs~mrpDi~~~deYVRnvt~ra~~vva~alg----v~~llpfl~a~c~  326 (975)
T COG5181         255 LIDEDLKRRCMGREIILNLVYRCGLGF----SVSSMRPDITSKDEYVRNVTGRAVGVVADALG----VEELLPFLEALCG  326 (975)
T ss_pred             ccCccHHHhcccHHHHHHHHHHhccce----eeeeccCCcccccHHHHHHHHHHHHHHHHhhC----cHHHHHHHHHHhc
Confidence            345666666666444555554444321    1222221 223455678777888877777666    4567888888877


Q ss_pred             Cc-hhHHHHHHHHHHHHHHhhcChhhH--hhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH---HHHHHHHHHHHH
Q 007863           97 VE-ETCVRDKAVESLCRIGSQMREQDV--VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---ALKTELRTIYRQ  170 (587)
Q Consensus        97 ~~-~~~vr~~a~~~l~~l~~~~~~~~~--~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~---~~~~~l~~~l~~  170 (587)
                      +. .+.-|...++...+++.-+|....  ...++..+..+..|+...+|+.++..++.+++...+   +..+.++..+..
T Consensus       327 SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~  406 (975)
T COG5181         327 SRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWE  406 (975)
T ss_pred             CccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            65 778888888888888877665432  123444555666777777787777777777666554   244444444444


Q ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHhcccCchhHHHHHH-----------------------H
Q 007863          171 LCQDDMPMVRRSAATNLGKFAATVEAA---HLKSEIMSIFEELTQDDQDSVRLLAV-----------------------E  224 (587)
Q Consensus       171 l~~~~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~-----------------------~  224 (587)
                      ..+..-..+-.+..++.|.++....++   .+......++...++++++..+....                       +
T Consensus       407 g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pe  486 (975)
T COG5181         407 GASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPE  486 (975)
T ss_pred             HHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHH
Confidence            433333333344444444443332211   11222333333333333222111111                       1


Q ss_pred             HHHHHhcc--cC----------------hhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC----------
Q 007863          225 GCGALGKL--LE----------------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----------  276 (587)
Q Consensus       225 ~l~~l~~~--~~----------------~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----------  276 (587)
                      .+..++..  .+                +..-.+.+...+.+..+|+....|..++.....+...+|...          
T Consensus       487 fF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~  566 (975)
T COG5181         487 FFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLY  566 (975)
T ss_pred             hhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHH
Confidence            11111110  00                000123355566667778877788888777766655443210          


Q ss_pred             ----------------------------------cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---CHHHHHHh
Q 007863          277 ----------------------------------TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---NPELAIQH  319 (587)
Q Consensus       277 ----------------------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~  319 (587)
                                                        ....++..+..+++.+.+.||..|+...+.+...+   +......+
T Consensus       567 d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~k  646 (975)
T COG5181         567 DSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAK  646 (975)
T ss_pred             HHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence                                              11235666677889999999999999888776644   45544556


Q ss_pred             HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh----chh
Q 007863          320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GID  392 (587)
Q Consensus       320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~----~~~  392 (587)
                      +-..+.+.+....+.|--..+.++..+....+..   .-...++|.+...|+.....|....+..++.|+..-    |..
T Consensus       647 lg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~r  726 (975)
T COG5181         647 LGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVR  726 (975)
T ss_pred             HhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHH
Confidence            6666677788888999989888888887766432   224578888999999999999999999999888543    334


Q ss_pred             hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh
Q 007863          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA  472 (587)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  472 (587)
                      ++.... =-+.+.+.+.+..+|.++.+.++.+++.+|++    .++.++++.++......|....-+++..++.+|+   
T Consensus       727 EWMRIc-feLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq----dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp---  798 (975)
T COG5181         727 EWMRIC-FELVDSLKSWNKEIRRNATETFGCISRAIGPQ----DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP---  798 (975)
T ss_pred             HHHHHH-HHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH----HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc---
Confidence            443322 22345567788899999999999999999985    4566777777777777888888888888888775   


Q ss_pred             hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh---ch
Q 007863          473 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV---DQ  547 (587)
Q Consensus       473 ~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~---~~  547 (587)
                       -.++|.++.-...|+..++...++++..+.+..|..  .+...+.|.+...++|.++..|+.+.+.+..+.-..   +.
T Consensus       799 -fsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~  877 (975)
T COG5181         799 -FSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGD  877 (975)
T ss_pred             -hhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCccc
Confidence             347899888888899999999999999998877753  467889999999999999999999999998886543   22


Q ss_pred             HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhcC
Q 007863          548 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMSG  587 (587)
Q Consensus       548 ~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~~  587 (587)
                      +...-+++..|..=.-++.|.|.....+++..++..+|++
T Consensus       878 eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g  917 (975)
T COG5181         878 EDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSG  917 (975)
T ss_pred             HHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccH
Confidence            3333445555555567899999999999999999999874

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.88  E-value=6.4e-18  Score=165.33  Aligned_cols=501  Identities=16%  Similarity=0.155  Sum_probs=336.6

Q ss_pred             HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC-------C
Q 007863           84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS-------A  156 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~-------~  156 (587)
                      .......+.+++.|.+..|+..|+++++-++...+.+++...+-.+..++...........++++...+.+.       .
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~l  124 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFL  124 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcccccc
Confidence            345566777888999999999999999999999988776665444444444444333444555544443222       2


Q ss_pred             CHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          157 PEALKTELRTIYRQLCQ--DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       157 ~~~~~~~l~~~l~~l~~--~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      ...+.+.+.|.+.....  .+...++-.++..++.+...++.  +++...++..+.--+......||+-|+.+++.++..
T Consensus       125 a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~  204 (1233)
T KOG1824|consen  125 AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS  204 (1233)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh
Confidence            23466777777766543  34455888888888888887775  457777777777778888889999999999999998


Q ss_pred             cChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhc---CCChHHHHHHHHHhHHHH
Q 007863          233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL---RDNEAEVRIAAAGKVTKI  307 (587)
Q Consensus       233 ~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l  307 (587)
                      .+.+.+..-+-..+..+.+..+...-+..+++|+.++...|...  ....++|.+.+++   +..+.+.|+.++++++.+
T Consensus       205 ~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~f  284 (1233)
T KOG1824|consen  205 CNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESF  284 (1233)
T ss_pred             cCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence            88764444444444445555566666677899999999888643  3456889999888   777889999999999999


Q ss_pred             HHhhCHH--HHHHhHHHHHhHhcC----------------------------------CCcHHHHHHHHHHHHhhhhhhc
Q 007863          308 CRILNPE--LAIQHILPCVKELSS----------------------------------DSSQHVRSALATVIMGMAPILG  351 (587)
Q Consensus       308 ~~~~~~~--~~~~~~~~~l~~~~~----------------------------------d~~~~vr~~a~~~l~~l~~~~~  351 (587)
                      ....+.+  .+.++++....+.+.                                  |-+|.||++|++++..+...-.
T Consensus       285 l~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~  364 (1233)
T KOG1824|consen  285 LRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRL  364 (1233)
T ss_pred             HHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccH
Confidence            9987765  233444444332211                                  2359999999999987653221


Q ss_pred             --hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch----------------h---------------------
Q 007863          352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------------D---------------------  392 (587)
Q Consensus       352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~----------------~---------------------  392 (587)
                        -..+.+.+-|.++.-+++.+++|+...+.++-.+....++                .                     
T Consensus       365 E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~ql  444 (1233)
T KOG1824|consen  365 EMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQL  444 (1233)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHH
Confidence              1234456777888888888888887776665554432210                0                     


Q ss_pred             ---------------------------hHhhhhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChhhHHH---HHHHH
Q 007863          393 ---------------------------LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDD---KLGAL  440 (587)
Q Consensus       393 ---------------------------~~~~~~~~~l~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~  440 (587)
                                                 +....++|-+...+.|.+  ...+..++..+.......+++.|.+   .+.|.
T Consensus       445 r~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~  524 (1233)
T KOG1824|consen  445 REKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPP  524 (1233)
T ss_pred             hhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhH
Confidence                                       000112222222233321  2334444444444444445555543   46777


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhCh---------hhhhhchHHHHHhh--hcCCccHHHHHHHHHHHHhhcccChH
Q 007863          441 CMQWLKDKVYSIRDAAANNVKRLAEEFGP---------DWAMQHIVPQVLEM--INNPHYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------~~~~~~~~~~l~~~--l~~~~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      +.....|+.+.+-..|+...+.+++.+.+         ..+...++....+.  .+|.+.+||+.|+.+++.+...+|..
T Consensus       525 v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~  604 (1233)
T KOG1824|consen  525 VVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF  604 (1233)
T ss_pred             HHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence            88888999999999999999999886533         12334444444443  46778999999999999998877732


Q ss_pred             --HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh---hchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863          510 --ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       510 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~---~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                        ...+..+|.+.+-++  +...|..|++++..++..   ++..+....++|.+...+.......|.....++..+.+..
T Consensus       605 l~~eL~~~L~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~  682 (1233)
T KOG1824|consen  605 LGNELPRTLPILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNY  682 (1233)
T ss_pred             hhhhhHHHHHHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              135666777766665  578899999999988754   3334666778888877766656667777777777777766


Q ss_pred             hc
Q 007863          585 MS  586 (587)
Q Consensus       585 ~~  586 (587)
                      +.
T Consensus       683 ~~  684 (1233)
T KOG1824|consen  683 SD  684 (1233)
T ss_pred             hc
Confidence            54

>PRK09687 putative lyase; Provisional

Probab=99.87  E-value=3.9e-20  Score=167.58  Aligned_cols=254  Identities=19%  Similarity=0.171  Sum_probs=193.7

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  360 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  360 (587)
                      -.+.+..++.|++..||..++.+|+.+..        +.+++.+..+++|++..+|..++.+|+.+...-.   .....+
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~   92 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVF   92 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHH
Confidence            35666777788888888888888887753        4456777777888888888888888888763211   123455


Q ss_pred             HHHHHh-cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 007863          361 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (587)
Q Consensus       361 ~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  439 (587)
                      |.+..+ ++|+++.||..++.+|+.+.....  ......++.+...+.|++|.||..++..++.+..        +..++
T Consensus        93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai~  162 (280)
T PRK09687         93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAIP  162 (280)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHHH
Confidence            666655 788888999999998888753211  1123456666677788899999999988865432        34678


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863          440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  519 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l  519 (587)
                      .+...+.|+++.||..|+.+||.+.  .+    .+...+.+...+.|+++.||..|+.+++.+..        ...+|.+
T Consensus       163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L  228 (280)
T PRK09687        163 LLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL  228 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence            8888999999999999999999872  11    24578888888999999999999999988754        4688889


Q ss_pred             HhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007863          520 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS  579 (587)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~  579 (587)
                      .+.+.+++  +|..++.+|+.+...        ..+|.|.+++. ++|+.|+..|.+++.+
T Consensus       229 i~~L~~~~--~~~~a~~ALg~ig~~--------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        229 IKELKKGT--VGDLIIEAAGELGDK--------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHcCCc--hHHHHHHHHHhcCCH--------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            99888865  788899999988653        68899999875 8899999999998865

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.86  E-value=8e-20  Score=194.36  Aligned_cols=275  Identities=22%  Similarity=0.255  Sum_probs=221.2

Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHH
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL  321 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  321 (587)
                      -++.+...+.|+++.||..|+..|+.+.        ....++.+...++|+++.||..|+.+|..+......       .
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~--------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETT--------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------A  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhc--------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------h
Confidence            4567778889999999999999999864        345789999999999999999999999988654332       2


Q ss_pred             HHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863          322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~  401 (587)
                      +.+...++++++.||.+++.+|+.+...  .       .+.+...+.|+++.||..++.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~~--~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRAG--D-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhccC--C-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            4455667889999999999999887421  1       1346678999999999999999998632           133


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHH
Q 007863          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL  481 (587)
Q Consensus       402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  481 (587)
                      +..++.|+++.||..+...|+.+...-      ....+.+..+++|+++.||..|+.+|+.+..    .   ..+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHH
Confidence            556789999999999999998776421      1225677789999999999999999988742    1   23445677


Q ss_pred             hhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863          482 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  561 (587)
Q Consensus       482 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l  561 (587)
                      ..+.|++|.+|..|+.+|+.+..        +..++.+..+++|+++.||..|+.+|+.+..       .....+.|..+
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-------~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWPG-------DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccCC-------CHHHHHHHHHH
Confidence            88999999999999999988753        3466889999999999999999999999721       13567888899


Q ss_pred             cCCCCccHHHHHHHHHHH
Q 007863          562 SEDPDVDVRFFATQALQS  579 (587)
Q Consensus       562 ~~d~~~~Vr~~a~~al~~  579 (587)
                      ++|++++||..|.+||..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999999864

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.85  E-value=1.5e-16  Score=147.77  Aligned_cols=545  Identities=11%  Similarity=0.069  Sum_probs=368.0

Q ss_pred             HHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCch-HHHHHHHHHhcccccCcCCcc----hHhhhh
Q 007863           15 IDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDD-EVLLAMAEELGVFIPYVGGLE----YANVLL   88 (587)
Q Consensus        15 ~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~-~v~~~~~~~l~~~~~~~~~~~----~~~~l~   88 (587)
                      +..|+|+.+.....|.+.+..++...-|...|+.++..+.... ++.+ .+.......+|..+.....+.    +...++
T Consensus       100 l~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~  179 (858)
T COG5215         100 LRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILF  179 (858)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHH
Confidence            4678899999999999999999988888888888887765533 4433 455566677777766433211    112222


Q ss_pred             hHHHhhh-cCchhHHHHHHHHHHHHHHh----hcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhh----ccCCCHH
Q 007863           89 PPLETLC-TVEETCVRDKAVESLCRIGS----QMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA----YPSAPEA  159 (587)
Q Consensus        89 ~~l~~l~-~~~~~~vr~~a~~~l~~l~~----~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~----~~~~~~~  159 (587)
                      .+...-. ..++..+|.+|+.+|..-+.    .+-.+.-+.++++.+.+....++..+..++.+.+..+    +.....-
T Consensus       180 aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~y  259 (858)
T COG5215         180 AIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSY  259 (858)
T ss_pred             HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2322222 35688999999999987332    2334455677888888877777666666665543332    3333333


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh-------------------hhHHHHHHHHHHhcc-------c
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-------------------HLKSEIMSIFEELTQ-------D  213 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-------------------~~~~~i~~~l~~l~~-------d  213 (587)
                      ..+.+..+....+.+++..|...+++....+++.--+-                   .....++|.+..++.       +
T Consensus       260 mE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~  339 (858)
T COG5215         260 MENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYG  339 (858)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            45567777788899999999999999998887643210                   012235666666553       2


Q ss_pred             CchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcC
Q 007863          214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLR  290 (587)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~  290 (587)
                      +++++-++|..||.-+++..++. ....++.++.+-+..++|.-|.++..++|.+.+.-..   ....++.+|.+.....
T Consensus       340 DdWn~smaA~sCLqlfaq~~gd~-i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~  418 (858)
T COG5215         340 DDWNPSMAASSCLQLFAQLKGDK-IMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS  418 (858)
T ss_pred             cccchhhhHHHHHHHHHHHhhhH-hHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc
Confidence            46788999999999888877654 4455888889999999999999999999998753221   1123567888888889


Q ss_pred             CChHHHHHHHHHhHHHHHHhhC----HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH---------HHH
Q 007863          291 DNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---------TIE  357 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---------~~~  357 (587)
                      |+.-.|+..++.+++.++.++.    +..+....+......+.| ++.+-...++.+..+..++.+..         +..
T Consensus       419 D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~  497 (858)
T COG5215         419 DSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYL  497 (858)
T ss_pred             cceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHH
Confidence            9999999999999999988653    332222222222222333 34455555556666665554321         222


Q ss_pred             hHHHHHHHh--cCCCChHHHHHHHHHhHHhhhhhchh------hHhhhhHHHHHHHh---------cCC--CcHHHHHHH
Q 007863          358 QLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELA---------EDR--HWRVRLAII  418 (587)
Q Consensus       358 ~l~~~l~~~--l~d~~~~vr~~a~~~l~~i~~~~~~~------~~~~~~~~~l~~~~---------~~~--~~~vr~~~~  418 (587)
                      .++..+.+.  +.+.+...|..+.++|+.++......      .+...+...+.+.+         +|.  ..++....+
T Consensus       498 ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~  577 (858)
T COG5215         498 AILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYI  577 (858)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            333334332  23667889999999999887544321      01122222222211         111  245667777


Q ss_pred             HHHHHHHHhhCh--hhHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHH
Q 007863          419 EYIPLLASQLGV--GFFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRM  493 (587)
Q Consensus       419 ~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~  493 (587)
                      ..+..+.+..++  +...+.++.++++.++..++ .+-.....+++.+...++..|  +.+.++|.+.+.++..++.+-.
T Consensus       578 ~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~  657 (858)
T COG5215         578 GVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLN  657 (858)
T ss_pred             HHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHH
Confidence            788888887776  56678899999999987743 455666777788877776654  5689999999999888899999


Q ss_pred             HHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHh
Q 007863          494 TILQAISLLAPVMGSEI--TCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVEL  561 (587)
Q Consensus       494 ~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l  561 (587)
                      .++..++.++..++.+.  +...++..+..+++++  ..+++-..+..++-|...++.+  .+.+.++-.+.+.
T Consensus       658 ~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqa  731 (858)
T COG5215         658 SAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQA  731 (858)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999888763  5677888999999886  5678889999999998887764  4555555555553

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.85  E-value=9.6e-18  Score=171.74  Aligned_cols=462  Identities=15%  Similarity=0.144  Sum_probs=332.1

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHH
Q 007863           99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPM  178 (587)
Q Consensus        99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~  178 (587)
                      +...+..++.-+-.+.. .|. .+ ....+-+.++..++++..+..+.-.+..+.... ++..-...+.+.+-+.++++.
T Consensus        19 ~~~~~~~~l~kli~~~~-~G~-~~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~~~~l~~n~l~kdl~~~n~~   94 (526)
T PF01602_consen   19 DISKKKEALKKLIYLMM-LGY-DI-SFLFMEVIKLISSKDLELKRLGYLYLSLYLHED-PELLILIINSLQKDLNSPNPY   94 (526)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHCSSSHH
T ss_pred             CHHHHHHHHHHHHHHHH-cCC-CC-chHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHHHhhcCCCHH
Confidence            55555555444443221 222 22 245556666666777777777666655554433 455666778888888999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHH
Q 007863          179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVR  258 (587)
Q Consensus       179 vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR  258 (587)
                      +|..|..+++.+..    +...+.+.+.+.+++.|+++.||+.|+.++.++....+...... +.+.+.+++.|+++.|+
T Consensus        95 ~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~d~~~~V~  169 (526)
T PF01602_consen   95 IRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLSDKDPSVV  169 (526)
T ss_dssp             HHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTTHSSHHHH
T ss_pred             HHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhccCCcchhH
Confidence            99999999999873    46778899999999999999999999999999988754421122 79999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHH
Q 007863          259 YMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHV  335 (587)
Q Consensus       259 ~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v  335 (587)
                      .+|+..+..+ . ..+.   .....+...+.+.+.+.++..+..+++.+..++..-........+++.+..++++.++.|
T Consensus       170 ~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V  247 (526)
T PF01602_consen  170 SAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV  247 (526)
T ss_dssp             HHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence            9999999988 1 1111   112234455555558888889988888888775532222111457888888888889999


Q ss_pred             HHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHH
Q 007863          336 RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL  415 (587)
Q Consensus       336 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~  415 (587)
                      ...++.++..+...   ......+.+.+..++.++++++|..++.++..++..... .+ ......+..+..+++..+|.
T Consensus       248 ~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~-~v-~~~~~~~~~l~~~~d~~Ir~  322 (526)
T PF01602_consen  248 VYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPP-AV-FNQSLILFFLLYDDDPSIRK  322 (526)
T ss_dssp             HHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHH-HH-GTHHHHHHHHHCSSSHHHHH
T ss_pred             HHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccch-hh-hhhhhhhheecCCCChhHHH
Confidence            99999988876643   235677889999999999999999999999999876522 22 12223333444588999999


Q ss_pred             HHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHH
Q 007863          416 AIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMT  494 (587)
Q Consensus       416 ~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~  494 (587)
                      .+++.+..++..-+.    ..+++.+...+.+. +.++|..++..++.++..+...  .+..++.+.+++...+..+...
T Consensus       323 ~~l~lL~~l~~~~n~----~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~--~~~~v~~l~~ll~~~~~~~~~~  396 (526)
T PF01602_consen  323 KALDLLYKLANESNV----KEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD--AEWYVDTLLKLLEISGDYVSNE  396 (526)
T ss_dssp             HHHHHHHHH--HHHH----HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS--HHHHHHHHHHHHHCTGGGCHCH
T ss_pred             HHHHHHhhcccccch----hhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch--HHHHHHHHHHhhhhccccccch
Confidence            999999888864332    34666777777444 7789999999999999988654  4667888888888777777888


Q ss_pred             HHHHHHHhhcccChHHHHHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHH
Q 007863          495 ILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFA  573 (587)
Q Consensus       495 a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a  573 (587)
                      ++..+..+....+..  ...++..+.+.+.+ ..+.++..+++.+|+.+...+.......++..+.+...+.+..||..+
T Consensus       397 ~~~~i~~ll~~~~~~--~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~i  474 (526)
T PF01602_consen  397 IINVIRDLLSNNPEL--REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQI  474 (526)
T ss_dssp             HHHHHHHHHHHSTTT--HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHhhcChhh--hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHH
Confidence            888888887654332  35567777777665 578899999999999988876511445677777777777888999999


Q ss_pred             HHHHHHHHHHh
Q 007863          574 TQALQSKDQVM  584 (587)
Q Consensus       574 ~~al~~l~~~~  584 (587)
                      ..++.++....
T Consensus       475 lt~~~Kl~~~~  485 (526)
T PF01602_consen  475 LTALAKLFKRN  485 (526)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHhhC
Confidence            99998887653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK09687 putative lyase; Provisional

Probab=99.84  E-value=3.2e-19  Score=161.71  Aligned_cols=257  Identities=15%  Similarity=0.075  Sum_probs=197.3

Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHH
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ  318 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  318 (587)
                      ...-.+.+...+.|.+..||..++..|+.+.        ....++.+..+++|+++.+|..++.+|+.++..-..   ..
T Consensus        21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~--------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~   89 (280)
T PRK09687         21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRG--------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QD   89 (280)
T ss_pred             hhccHHHHHHHHhCCCHHHHHHHHHHHHhcC--------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hH
Confidence            3444566677778999999999999888654        346778888888999999999999999998642111   13


Q ss_pred             hHHHHHhHh-cCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863          319 HILPCVKEL-SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       319 ~~~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  397 (587)
                      ..++.+..+ .+|+++.||..++.+++.++....  .....+++.+...+.|+++.||..++.+|+.+..        +.
T Consensus        90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~  159 (280)
T PRK09687         90 NVFNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EA  159 (280)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HH
Confidence            466777765 688999999999999988853221  1123455667777888899999999999987642        45


Q ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchH
Q 007863          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV  477 (587)
Q Consensus       398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  477 (587)
                      .++.+..+++|++|.||..++..++.+..  +    .+...+.+...+.|+++.||..|+.+|+.+.        ....+
T Consensus       160 ai~~L~~~L~d~~~~VR~~A~~aLg~~~~--~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--------~~~av  225 (280)
T PRK09687        160 AIPLLINLLKDPNGDVRNWAAFALNSNKY--D----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--------DKRVL  225 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcCCC--C----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--------ChhHH
Confidence            78888888999999999999999887721  1    2356777888889999999999999998853        24578


Q ss_pred             HHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcC-CCCccHHHHHHHHHHH
Q 007863          478 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQS  540 (587)
Q Consensus       478 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~  540 (587)
                      |.+.+.+.+++  +|..++.+++.++.        +..+|.+..+++ +++..||..+.+++.+
T Consensus       226 ~~Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        226 SVLIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            88888888876  57778888888875        468888888886 7899999999888764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.84  E-value=8.7e-19  Score=186.53  Aligned_cols=274  Identities=20%  Similarity=0.194  Sum_probs=203.8

Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP  283 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  283 (587)
                      ++.|...++|+++.||..|+..|+.+..        +..++.|...+.|+++.||..|+..|+.+....+       -.+
T Consensus       623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~-------~~~  687 (897)
T PRK13800        623 VAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP-------PAP  687 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------chH
Confidence            4455567788899999999988887642        4467777788889999999999998887754321       135


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHH
Q 007863          284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF  363 (587)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  363 (587)
                      .+...++++++.||..++..|+.+..  +.       ...+...+.|+++.||..++.+|+.+..           .+.+
T Consensus       688 ~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l  747 (897)
T PRK13800        688 ALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESV  747 (897)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHH
Confidence            66677788888999999988887642  11       1234567789999999999998887631           1345


Q ss_pred             HHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 007863          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  443 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  443 (587)
                      ..++.|+++.||..++.+|+.+...-      ...++.+..+++|+++.+|..++..|+.+...       +.+.+.+..
T Consensus       748 ~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-------~~~~~~l~~  814 (897)
T PRK13800        748 AGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGCP-------PDDVAAATA  814 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-------chhHHHHHH
Confidence            67788999999999999988876431      12367777888899999999998888766431       223345677


Q ss_pred             HcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc
Q 007863          444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS  523 (587)
Q Consensus       444 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  523 (587)
                      .+.|++|.||..|+.+|+.+.        .+..++.+..++.|+++.||..++.+|+.+.   +.    +...+.+...+
T Consensus       815 aL~d~d~~VR~~Aa~aL~~l~--------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~----~~a~~~L~~al  879 (897)
T PRK13800        815 ALRASAWQVRQGAARALAGAA--------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD----PAARDALTTAL  879 (897)
T ss_pred             HhcCCChHHHHHHHHHHHhcc--------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC----HHHHHHHHHHH
Confidence            788899999999999988753        1345678888889999999999999999872   11    23566777888


Q ss_pred             CCCCccHHHHHHHHHHH
Q 007863          524 KDRVPNIKFNVAKVLQS  540 (587)
Q Consensus       524 ~d~~~~vR~~a~~~l~~  540 (587)
                      +|+++.||..|.++|..
T Consensus       880 ~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        880 TDSDADVRAYARRALAH  896 (897)
T ss_pred             hCCCHHHHHHHHHHHhh
Confidence            89999999999988863

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.84  E-value=7.8e-16  Score=143.03  Aligned_cols=527  Identities=13%  Similarity=0.089  Sum_probs=349.4

Q ss_pred             CCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCc-hhHHHHHHHHHHHHHHhhcChhhHhhh----hHHHHHH
Q 007863           58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE-ETCVRDKAVESLCRIGSQMREQDVVEH----FIPLVKR  132 (587)
Q Consensus        58 ~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~----ll~~~~~  132 (587)
                      ...++.-..++..++.++.+--.....+.++..+..-..++ ...++..++..++..|+.-.|+.+...    +..++..
T Consensus       105 s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~g  184 (858)
T COG5215         105 SPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMG  184 (858)
T ss_pred             CCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHh
Confidence            44555555666666665543111233455666655544444 446778889999999999888655432    2233333


Q ss_pred             hh-cCCCCcchhhHHhhhhh-h---ccC-CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHH
Q 007863          133 LA-AGEWFTARVSSCGLFHV-A---YPS-APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEI  203 (587)
Q Consensus       133 l~-~~~~~~~r~~a~~l~~~-~---~~~-~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i  203 (587)
                      .. +.....+|.++...+.. +   -.+ ..+..++.+++......+.++.++..++..+|.++....-.   ....+.+
T Consensus       185 a~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL  264 (858)
T COG5215         185 ALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL  264 (858)
T ss_pred             hcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22 23356678777764433 1   112 22457888999999999999999999999999998764332   2333445


Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhcccCh-------------h------hhhhchHHHHHHhcC-------CCchHH
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-------------Q------DCVAHILPVIVNFSQ-------DKSWRV  257 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-------------~------~~~~~l~~~l~~~~~-------d~~~~v  257 (587)
                      ..+.....+++++.|...+++.+..+++.--+             +      .-...++|.+++++.       +++|.+
T Consensus       265 ~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~  344 (858)
T COG5215         265 AALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNP  344 (858)
T ss_pred             HHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccch
Confidence            55666777888999999999999887653211             0      012346777776653       358999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcHH
Q 007863          258 RYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQH  334 (587)
Q Consensus       258 R~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~  334 (587)
                      -.+|..||.-++...|+.... .++.++-+-+..++|.-|++++-++|.+...-...   .+.+..+|.+.....|+.-.
T Consensus       345 smaA~sCLqlfaq~~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~  423 (858)
T COG5215         345 SMAASSCLQLFAQLKGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLW  423 (858)
T ss_pred             hhhHHHHHHHHHHHhhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceee
Confidence            999999999999887765433 37777788899999999999999999998743332   45677889999999999999


Q ss_pred             HHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh------Hh---hhhHHH
Q 007863          335 VRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL------LS---QSLLPA  401 (587)
Q Consensus       335 vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~------~~---~~~~~~  401 (587)
                      |+..++++++.++.++..    .....-.+......+.| .|.+.....+....+..++.+-.      +.   ..++..
T Consensus       424 vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~  502 (858)
T COG5215         424 VKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNA  502 (858)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHH
Confidence            999999999999877642    22222222223333455 36676777777777766654321      11   122222


Q ss_pred             HHHH--hcCCCcHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHc---------CC--CchHHHHHHHHHHHH
Q 007863          402 IVEL--AEDRHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWL---------KD--KVYSIRDAAANNVKR  462 (587)
Q Consensus       402 l~~~--~~~~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l---------~d--~~~~vr~~a~~~l~~  462 (587)
                      +...  ..+.+...|..+.+.++.+....+...      +.+....-+.+.+         +|  ...++...-+..|..
T Consensus       503 Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~a  582 (858)
T COG5215         503 LVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEA  582 (858)
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            2221  124566788899999998876554321      1122222221111         11  134666677777888


Q ss_pred             HHHHhChh--hhhhchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863          463 LAEEFGPD--WAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       463 l~~~~~~~--~~~~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~  537 (587)
                      +++..+.+  ...+.++..+++.+...+ ..+-.-...+|++++..+++  +.+.+.+.|.+.+.++..+..|-..++..
T Consensus       583 iir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avgl  662 (858)
T COG5215         583 IIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGL  662 (858)
T ss_pred             HHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHH
Confidence            88877774  244667777777766553 23344455677777776654  45788999999999988889999999999


Q ss_pred             HHHHHhhhchH--HHHHhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHHhhc
Q 007863          538 LQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       538 l~~l~~~~~~~--~~~~~i~~~l~~l~~d~--~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      ++.+...++.+  .+...++..|.++++.+  +++++-....+++.++.-.|.
T Consensus       663 vgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga  715 (858)
T COG5215         663 VGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA  715 (858)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence            99999888765  66677888888876554  567888888888888876663

>PTZ00429 beta-adaptin; Provisional

Probab=99.84  E-value=7.7e-16  Score=156.25  Aligned_cols=417  Identities=12%  Similarity=0.105  Sum_probs=275.0

Q ss_pred             CCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCc
Q 007863          136 GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ  215 (587)
Q Consensus       136 ~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~  215 (587)
                      +.++.+|..|+..++.+   ..++..+.+.+.+.+.+.|++|.||+.|+-++.++....++......+.+.+.+++.|.+
T Consensus       116 d~Np~IRaLALRtLs~I---r~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~D~d  192 (746)
T PTZ00429        116 NSSPVVRALAVRTMMCI---RVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNN  192 (746)
T ss_pred             CCCHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhcCCC
Confidence            33444554444433322   124456677777888889999999999999999987765432223346677788889999


Q ss_pred             hhHHHHHHHHHHHHhcccChh-hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCCh
Q 007863          216 DSVRLLAVEGCGALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNE  293 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~  293 (587)
                      +.|...|+.+|..+....+.. ......+..+...+.+-+++.+...++.|..   ..+.+ .....++..+...++..+
T Consensus       193 p~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il~~l~~~Lq~~N  269 (746)
T PTZ00429        193 PVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLLTRVLPRMSHQN  269 (746)
T ss_pred             ccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999988887654321 0112223334444455556666666666533   22211 112357777778888888


Q ss_pred             HHHHHHHHHhHHHHHHhhCHHHH---HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCC
Q 007863          294 AEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~---~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  370 (587)
                      +.|...|++++-.+.....++..   ...+.+.+..+ ..+++.+|..+++.+..+....+ ..+..+ +..+....+|+
T Consensus       270 ~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~-~~~Ff~~~~Dp  346 (746)
T PTZ00429        270 PAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTN-LDSFYVRYSDP  346 (746)
T ss_pred             HHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHH-HHhhhcccCCc
Confidence            99999999998888765443321   12233445555 35667899999998877775432 222222 34444555676


Q ss_pred             ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCch
Q 007863          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY  450 (587)
Q Consensus       371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  450 (587)
                      . .||...+..|..++..-.    ...++..+.....+.+..++..+++.++.++..++.  ..+.++..++.++.+...
T Consensus       347 ~-yIK~~KLeIL~~Lane~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~--~a~~cV~~Ll~ll~~~~~  419 (746)
T PTZ00429        347 P-FVKLEKLRLLLKLVTPSV----APEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS--VAPDCANLLLQIVDRRPE  419 (746)
T ss_pred             H-HHHHHHHHHHHHHcCccc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCch
Confidence            4 588888888887764322    245677777778888999999999999999876543  357788888888876544


Q ss_pred             HHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhh---cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863          451 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV  527 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~  527 (587)
                       +...++..+..+.+.+....    +++.+...+   .-.+...|.+.+|.+|.+++.+..   ...++..+.+-+.+.+
T Consensus       420 -~v~e~i~vik~IlrkyP~~~----il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~  491 (746)
T PTZ00429        420 -LLPQVVTAAKDIVRKYPELL----MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHE  491 (746)
T ss_pred             -hHHHHHHHHHHHHHHCccHH----HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCC
Confidence             44567888888887765432    445554322   113567899999999999876543   2455555556666778


Q ss_pred             ccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC-CCCccHHHHHHHHH
Q 007863          528 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQAL  577 (587)
Q Consensus       528 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al  577 (587)
                      +.||...+.+...+.-..+.+ ....+...|..+.+ |.++|||.+|..-.
T Consensus       492 ~~VqlqlLta~vKlfl~~p~~-~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~  541 (746)
T PTZ00429        492 QRVQLAILSAAVKMFLRDPQG-MEPQLNRVLETVTTHSDDPDVRDRAFAYW  541 (746)
T ss_pred             HHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence            999999999999887765432 33445555555544 57889999998544

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=6.7e-16  Score=143.32  Aligned_cols=377  Identities=16%  Similarity=0.197  Sum_probs=291.7

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhch
Q 007863          169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMS----IFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHI  242 (587)
Q Consensus       169 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~----~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l  242 (587)
                      ...+.|.-++-|++++.-+.++++.+....-.+++-.    ...++..+.+...|+.+...+...+-.++.  ..+...+
T Consensus         6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i   85 (675)
T KOG0212|consen    6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI   85 (675)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence            3556788889999999999999887654333333333    455566667777788777777766555554  3367888


Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HH
Q 007863          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA  316 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~  316 (587)
                      +|-+..+++|.+.+||..|++.+.++++....+.  ..+.+...+.++..|++..||.+ +..+.++.+..-.+    ..
T Consensus        86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikdIVte~~~tFs  164 (675)
T KOG0212|consen   86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKDIVTESASTFS  164 (675)
T ss_pred             hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHHhccccccccC
Confidence            9999999999999999999999999998876543  34568888889999999988865 45666666644322    23


Q ss_pred             HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh-
Q 007863          317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL-  393 (587)
Q Consensus       317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~-  393 (587)
                      .+.++|.+...+.+.++.+|.....++..+-..-+-+.  +.+.+++.+.+++.|++++||..+-.+++++...+..+. 
T Consensus       165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~  244 (675)
T KOG0212|consen  165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS  244 (675)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence            57889999999999999999999999988765544332  557889999999999999999998888888876664331 


Q ss_pred             --HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhC
Q 007863          394 --LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFG  468 (587)
Q Consensus       394 --~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~  468 (587)
                        -.+.+++.+..-+.++++.++..++.++..+....|....  .+.++..++.++.|... .++..+...-+.+.+.++
T Consensus       245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s  324 (675)
T KOG0212|consen  245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS  324 (675)
T ss_pred             ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence              1256778887788899999999999999999998877653  35667777778877766 577777766666665554


Q ss_pred             hhhh-----hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863          469 PDWA-----MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       469 ~~~~-----~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l  541 (587)
                      .+..     ...++..+.+.+.+.....|.+++.++..+....+.+.  +...+.+.+++.+.|++..|-..++..+..+
T Consensus       325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i  404 (675)
T KOG0212|consen  325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI  404 (675)
T ss_pred             hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence            4321     24688888888999999999999999999998877664  3577999999999999999999999999999


Q ss_pred             Hhhhc
Q 007863          542 IPIVD  546 (587)
Q Consensus       542 ~~~~~  546 (587)
                      +..-.
T Consensus       405 ~~s~~  409 (675)
T KOG0212|consen  405 CSSSN  409 (675)
T ss_pred             hcCcc
Confidence            87643

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.78  E-value=3.3e-17  Score=164.51  Aligned_cols=269  Identities=20%  Similarity=0.225  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh------hhhhhchHHHHHHhc
Q 007863          177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFS  250 (587)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~  250 (587)
                      ..-|..|++.|..+...+..+...+.++|++..++.|....||..|+.++..+...+.+      ..+.++++|.+..+.
T Consensus       437 ~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~  516 (1431)
T KOG1240|consen  437 IQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLL  516 (1431)
T ss_pred             chhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhh
Confidence            44566666666666666666666666666666666666666666666666665544332      234556666666666


Q ss_pred             CC-CchHHHHHHHHHHHHHHHHhC------------------CC------Cc-------ccchHHHHHHhcCCChHHHHH
Q 007863          251 QD-KSWRVRYMVANQLYELCEAVG------------------PE------PT-------RSDVVPAYVRLLRDNEAEVRI  298 (587)
Q Consensus       251 ~d-~~~~vR~~a~~~l~~l~~~~~------------------~~------~~-------~~~l~~~l~~~l~d~~~~vr~  298 (587)
                      .| ....||.+-+.+|+.++....                  ..      ..       ...+-.....++.|+++.||.
T Consensus       517 ~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr  596 (1431)
T KOG1240|consen  517 NDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKR  596 (1431)
T ss_pred             ccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            66 455666666666666654210                  00      00       012445567788999999999


Q ss_pred             HHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH
Q 007863          299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI  378 (587)
Q Consensus       299 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  378 (587)
                      +-++.|..++..+|++.-.+.+++.+..+++|.+|..|.+..+.+..++-.+|.....++++|++.+.+.|.++.|-..|
T Consensus       597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a  676 (1431)
T KOG1240|consen  597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA  676 (1431)
T ss_pred             HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence            99999999999999987778899999999999999999999999999988888887788999999999999999999999


Q ss_pred             HHHhHHhhhhhch-hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863          379 ISKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       379 ~~~l~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      +.++..+++.--- +.....++.....++..+|-.+|.+++..|..+.+.++.....-.++|++-.++
T Consensus       677 L~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl  744 (1431)
T KOG1240|consen  677 LGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFL  744 (1431)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhh
Confidence            9999998864211 111233445555567899999999999999999988876544333444444333

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=5.5e-15  Score=152.27  Aligned_cols=496  Identities=18%  Similarity=0.202  Sum_probs=319.7

Q ss_pred             HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhh-H---hhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH
Q 007863           84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD-V---VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~-~---~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~  159 (587)
                      ...+...+..++.++++..|++++-.|-.+.++++... .   ...+...+..+..+++.-+.-.|..=++.+++-.+..
T Consensus       816 ~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~  895 (1702)
T KOG0915|consen  816 ETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS  895 (1702)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence            35667788889999999999999999999999887321 1   1223333333333332111111221122222221111


Q ss_pred             ---------------------------------------------HHHHHH------------HHHHHhcC-CCCHHHHH
Q 007863          160 ---------------------------------------------LKTELR------------TIYRQLCQ-DDMPMVRR  181 (587)
Q Consensus       160 ---------------------------------------------~~~~l~------------~~l~~l~~-~~~~~vR~  181 (587)
                                                                   ..+++.            --+.++.+ +..+.-|+
T Consensus       896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~  975 (1702)
T KOG0915|consen  896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK  975 (1702)
T ss_pred             hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence                                                         122222            22333333 23577889


Q ss_pred             HHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHH
Q 007863          182 SAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRV  257 (587)
Q Consensus       182 ~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~v  257 (587)
                      .|+-.++.++...++  +++...++|-+..+-.|++..|+.+-...+..+...-..  +.+.++|+.-++..+.+..|+|
T Consensus       976 GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRV 1055 (1702)
T KOG0915|consen  976 GAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRV 1055 (1702)
T ss_pred             chhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHH
Confidence            999999999988765  578888999999999999999999888888877654332  5577788888888899999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCcccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHHhh---C-------HHHHHHhHHHHH
Q 007863          258 RYMVANQLYELCEAVGPEPTRSD---VVPAYVRLLRDNEAEVRIAAAGKVTKICRIL---N-------PELAIQHILPCV  324 (587)
Q Consensus       258 R~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-------~~~~~~~~~~~l  324 (587)
                      |.+++-++..+...-+.+...+.   +...+.+..+|-...||++|-.+...+++.+   +       .......++|.+
T Consensus      1056 ReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfL 1135 (1702)
T KOG0915|consen 1056 REASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFL 1135 (1702)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHH
Confidence            99999999998876444333333   3444445556777889998776666655533   1       124456678877


Q ss_pred             hH-hcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCCChHHHHHHHHHh-------------------
Q 007863          325 KE-LSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKL-------------------  382 (587)
Q Consensus       325 ~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l-------------------  382 (587)
                      .. ..-+.-..||..++..+..+++..|..  .+...++|.+......-++.|-....--+                   
T Consensus      1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred             hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence            52 333666899999999999999888753  35677888888887776666543322111                   


Q ss_pred             ------HHhhhhhchhhHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHcCCCchHHH
Q 007863          383 ------DQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVYSIR  453 (587)
Q Consensus       383 ------~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr  453 (587)
                            ......+. ....+.++|.+.+++... .-..|..+...+..+...+|.+  .+...++..++..++|.+..+|
T Consensus      1216 pmmeTi~~ci~~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~ 1294 (1702)
T KOG0915|consen 1216 PMMETINKCINYID-ISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVR 1294 (1702)
T ss_pred             cHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHH
Confidence                  11111111 234467888888888654 5667888888998888888754  3567889999999999999999


Q ss_pred             HHHHHHHHHHHHHhChhhhhhchHHHHHh-hhcCCccHHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCccH
Q 007863          454 DAAANNVKRLAEEFGPDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNI  530 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~v  530 (587)
                      .+-..+.|.+.+.-.++.+ ..++..+.. ++.+.+. .+..++..+.+|+.+...  ..+...++|.++-..++...  
T Consensus      1295 kafAsAmG~L~k~Ss~dq~-qKLie~~l~~~l~k~es-~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~K-- 1370 (1702)
T KOG0915|consen 1295 KAFASAMGYLAKFSSPDQM-QKLIETLLADLLGKDES-LKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEK-- 1370 (1702)
T ss_pred             HHHHHHHHHHHhcCChHHH-HHHHHHHHHHHhccCCC-ccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHH--
Confidence            9999999999987766543 344444443 3333322 224555555555443322  12567788887765554411  


Q ss_pred             HHHHHHHHHHHHhhhch------H-HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          531 KFNVAKVLQSLIPIVDQ------S-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       531 R~~a~~~l~~l~~~~~~------~-~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                        .-......+...+-+      . ...+.+.+.+.+..++..|.+|..+++++..++..+.+
T Consensus      1371 --a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~ss 1431 (1702)
T KOG0915|consen 1371 --ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSS 1431 (1702)
T ss_pred             --HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccc
Confidence              111111222222111      1 23345566677778888899999999999988876654

>PTZ00429 beta-adaptin; Provisional

Probab=99.77  E-value=6.4e-14  Score=142.46  Aligned_cols=461  Identities=12%  Similarity=0.050  Sum_probs=300.2

Q ss_pred             HhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHh
Q 007863           92 ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQL  171 (587)
Q Consensus        92 ~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l  171 (587)
                      .+.+.+.+...|..+++.+-.... .|. +. ..+.+-+.+...+++...|...+--+....+. .++..-..++.+.+-
T Consensus        38 r~~L~s~~~~~kk~alKkvIa~mt-~G~-Dv-S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~-~pelalLaINtl~KD  113 (746)
T PTZ00429         38 QNDLNGTDSYRKKAAVKRIIANMT-MGR-DV-SYLFVDVVKLAPSTDLELKKLVYLYVLSTARL-QPEKALLAVNTFLQD  113 (746)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHH-CCC-Cc-hHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc-ChHHHHHHHHHHHHH
Confidence            333345555555555554443322 222 22 23455555566666777776655544444332 244445667888888


Q ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC
Q 007863          172 CQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ  251 (587)
Q Consensus       172 ~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~  251 (587)
                      +.|++|.+|..|+++++.+..    +.+.+.+.+.+.+.+.|.++.||+.|+-++.++....+.-.....+.+.+.+++.
T Consensus       114 l~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~  189 (746)
T PTZ00429        114 TTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN  189 (746)
T ss_pred             cCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc
Confidence            999999999999999988643    4677888899999999999999999999999998765542223457788888999


Q ss_pred             CCchHHHHHHHHHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCC
Q 007863          252 DKSWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD  330 (587)
Q Consensus       252 d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d  330 (587)
                      |.++.|...|+..|..+....+.... ....+..+...+.+-++.-+...++.|.....  ..+.....++..+...+++
T Consensus       190 D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e~~~il~~l~~~Lq~  267 (746)
T PTZ00429        190 DNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKESAETLLTRVLPRMSH  267 (746)
T ss_pred             CCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHhcC
Confidence            99999999999999998764332110 11223333444455455555555555533211  0112235677788888889


Q ss_pred             CcHHHHHHHHHHHHhhhhhhchHHH---HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc
Q 007863          331 SSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  407 (587)
Q Consensus       331 ~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~  407 (587)
                      .|..|.-++++++..+......+..   ...+.+.+..+ ...++++|..++..+..+.... +..+.. -+..+....+
T Consensus       268 ~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~-~~~~Ff~~~~  344 (746)
T PTZ00429        268 QNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRT-NLDSFYVRYS  344 (746)
T ss_pred             CCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHH-HHHhhhcccC
Confidence            9999999999999888765432221   12333445555 4567899999999998887643 222222 2333334446


Q ss_pred             CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC
Q 007863          408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  487 (587)
Q Consensus       408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~  487 (587)
                      |+.. +|...++.+..+++.-+.    ..++.-+.....+.+.+++..++.++|.++..+...  .+.++..+.+++.+.
T Consensus       345 Dp~y-IK~~KLeIL~~Lane~Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~--a~~cV~~Ll~ll~~~  417 (746)
T PTZ00429        345 DPPF-VKLEKLRLLLKLVTPSVA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV--APDCANLLLQIVDRR  417 (746)
T ss_pred             CcHH-HHHHHHHHHHHHcCcccH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHhcCC
Confidence            6664 899999998888764433    345555667778899999999999999999876543  567888888887664


Q ss_pred             ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc---CCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCC
Q 007863          488 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED  564 (587)
Q Consensus       488 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l---~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d  564 (587)
                      .. +...++..+..+.+..+..    .+++.+...+   .=..+..|.+.++.+|+.+..++..   ..++..+.+-..+
T Consensus       418 ~~-~v~e~i~vik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a---~~~L~~~i~~f~~  489 (746)
T PTZ00429        418 PE-LLPQVVTAAKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENG---KDIIQRFIDTIME  489 (746)
T ss_pred             ch-hHHHHHHHHHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhH---HHHHHHHHhhhcc
Confidence            43 3335677788887655543    2444444432   1146889999999999988766432   2344333333345


Q ss_pred             CCccHHHHHHHHHHHH
Q 007863          565 PDVDVRFFATQALQSK  580 (587)
Q Consensus       565 ~~~~Vr~~a~~al~~l  580 (587)
                      ..+.||.....+..++
T Consensus       490 E~~~VqlqlLta~vKl  505 (746)
T PTZ00429        490 HEQRVQLAILSAAVKM  505 (746)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            6778888776666544

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=8.8e-15  Score=150.78  Aligned_cols=407  Identities=17%  Similarity=0.181  Sum_probs=290.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-h---hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-A---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      ....+...+..++.+++|.+|++.+-+|-.++.+++. +   ...++|..-|.+++.|.++.++..|.+.++-+.+.-+.
T Consensus       815 ~~~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~  894 (1702)
T KOG0915|consen  815 RETIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDS  894 (1702)
T ss_pred             cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCc
Confidence            4567888899999999999999999999999999984 2   23467778889999999888888888876654322110


Q ss_pred             --------------------------------------------------------hhhhhchHHHHHHhcC-CCchHHH
Q 007863          236 --------------------------------------------------------QDCVAHILPVIVNFSQ-DKSWRVR  258 (587)
Q Consensus       236 --------------------------------------------------------~~~~~~l~~~l~~~~~-d~~~~vR  258 (587)
                                                                              +-..+.++=.+.++.+ +..|.-|
T Consensus       895 ~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk  974 (1702)
T KOG0915|consen  895 SLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSK  974 (1702)
T ss_pred             hhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcc
Confidence                                                                    0001223333334443 4589999


Q ss_pred             HHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC--HHHHHHhHHHHHhHhcCCCcHH
Q 007863          259 YMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQH  334 (587)
Q Consensus       259 ~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~  334 (587)
                      +.|+..++.++...+..  .+...++|-+.++--|++..|+.+....+..+...-.  -+.+.++++.-+...+.+..|+
T Consensus       975 ~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewR 1054 (1702)
T KOG0915|consen  975 KGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWR 1054 (1702)
T ss_pred             cchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHH
Confidence            99999999999877653  3445789999999999999999998888888765311  1245677777777888999999


Q ss_pred             HHHHHHHHHHhhhhhhchHHHHHhH---HHHHHHhcCCCChHHHHHHHH---HhHHhhhhhc-------hhhHhhhhHHH
Q 007863          335 VRSALATVIMGMAPILGKDATIEQL---LPIFLSLLKDEFPDVRLNIIS---KLDQVNQVIG-------IDLLSQSLLPA  401 (587)
Q Consensus       335 vr~~a~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~---~l~~i~~~~~-------~~~~~~~~~~~  401 (587)
                      ||++.|-++..+...-+.+...+.+   ...+...+.|-.+.||.++-.   ++++++-.++       .++....++|.
T Consensus      1055 VReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPf 1134 (1702)
T KOG0915|consen 1055 VREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPF 1134 (1702)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHH
Confidence            9999999999998776655555544   344445556667888887644   4555443322       23445667777


Q ss_pred             HHHH-hcCCCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHH-------------------HHHHH--
Q 007863          402 IVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSI-------------------RDAAA--  457 (587)
Q Consensus       402 l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~v-------------------r~~a~--  457 (587)
                      +.+- +-+.-..+|..++..+..+.+..|...  +.+.+.|.+++....-.+.|                   |..++  
T Consensus      1135 Ll~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aks 1214 (1702)
T KOG0915|consen 1135 LLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKS 1214 (1702)
T ss_pred             HhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcC
Confidence            6542 236678999999999999998877542  34667777777665433322                   22222  


Q ss_pred             ----HHHHHHHHHhChhhhhhchHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccH
Q 007863          458 ----NNVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNI  530 (587)
Q Consensus       458 ----~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~v  530 (587)
                          +++..+....... ..++++|.+.+++... ....|.++...+..+...+|.+  ++...++..++...+|.++.+
T Consensus      1215 spmmeTi~~ci~~iD~~-vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv 1293 (1702)
T KOG0915|consen 1215 SPMMETINKCINYIDIS-VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESV 1293 (1702)
T ss_pred             CcHHHHHHHHHHhhhHH-HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHH
Confidence                2233333333322 4588999998887655 5678899999999999888876  478889999999999999999


Q ss_pred             HHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCc
Q 007863          531 KFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDV  567 (587)
Q Consensus       531 R~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~  567 (587)
                      |.....+.+.+...-.++.....+...+-.++.+.+.
T Consensus      1294 ~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1294 RKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC
Confidence            9999999999998877777666666665555544433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.73  E-value=2.2e-16  Score=158.72  Aligned_cols=283  Identities=22%  Similarity=0.288  Sum_probs=222.9

Q ss_pred             hHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH------H
Q 007863          242 ILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------E  314 (587)
Q Consensus       242 l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~  314 (587)
                      +++.+...+.. .....|..|++.|..++.....+...+.++|.++.++.|++..||..|+.+|..+.....+      .
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            45555555544 3556788888888888888777666778899999999999999999999888888775532      2


Q ss_pred             HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhc------h-------------------------HHHHHhHHHH
Q 007863          315 LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG------K-------------------------DATIEQLLPI  362 (587)
Q Consensus       315 ~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~------~-------------------------~~~~~~l~~~  362 (587)
                      .|.++++|.+..++.| ....||.+.+.+|+.++....      .                         ......+-..
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~  582 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQM  582 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHH
Confidence            4667888999888888 667888888888888765321      0                         0111234456


Q ss_pred             HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 007863          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  442 (587)
                      +..++.|+.+.||.+.++.+..++..+|.+.-.+.+++.+...++|++|..|.+..+.|..++-.+|.....+.++|++.
T Consensus       583 v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~  662 (1431)
T KOG1240|consen  583 VSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQ  662 (1431)
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHH
Confidence            67889999999999999999999999998887788999999999999999999999999999888898878899999999


Q ss_pred             HHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHh
Q 007863          443 QWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN  521 (587)
Q Consensus       443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~  521 (587)
                      +.+.|....|-..|+.++..+++.---+ ....+++....-++-+||..+|.+++..|..+...++.....-.++|.+-.
T Consensus       663 Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irp  742 (1431)
T KOG1240|consen  663 QGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRP  742 (1431)
T ss_pred             HhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHH
Confidence            9999999999999999999998732111 123445556666788999999999999999999888766555555555555


Q ss_pred             hcC
Q 007863          522 ASK  524 (587)
Q Consensus       522 ~l~  524 (587)
                      ++.
T Consensus       743 fl~  745 (1431)
T KOG1240|consen  743 FLE  745 (1431)
T ss_pred             hhh
Confidence            444

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.72  E-value=1.2e-13  Score=128.54  Aligned_cols=423  Identities=16%  Similarity=0.139  Sum_probs=297.2

Q ss_pred             hcCchhHHHHHHHHHHHHHHhhcCh----hhHhhhhHHHHHHhhcCCCCcchhhHH-hhhhh--hccCCCHHHHHHHHHH
Q 007863           95 CTVEETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLVKRLAAGEWFTARVSSC-GLFHV--AYPSAPEALKTELRTI  167 (587)
Q Consensus        95 ~~~~~~~vr~~a~~~l~~l~~~~~~----~~~~~~ll~~~~~l~~~~~~~~r~~a~-~l~~~--~~~~~~~~~~~~l~~~  167 (587)
                      ++|.--.-|++|+.-+..+.+.+-.    +++.+.+-.+..++..+.....|..+. ++...  ....-+..+.+.+++.
T Consensus         9 ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~P   88 (675)
T KOG0212|consen    9 LTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPP   88 (675)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHH
Confidence            3455567788888878777776432    233333333555555555444444322 21111  1112222377888888


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhc
Q 007863          168 YRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAH  241 (587)
Q Consensus       168 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~  241 (587)
                      +...++|++..||-.||+.+-++++....+  .+.+.+...+.++..|.+..||. +.+.+..+.+.+..    ....+.
T Consensus        89 v~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte~~~tFsL~~  167 (675)
T KOG0212|consen   89 VLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTESASTFSLPE  167 (675)
T ss_pred             HHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccccccccCHHH
Confidence            899999999999999999999999987663  46678888899999999888886 45666666655443    223567


Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---H
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---A  316 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~  316 (587)
                      ++|.+..-+.+.++.+|.....++..+-..-+-+  .+.+.+++.+..+++|+..+||..+-.+++.+...+..++   -
T Consensus       168 ~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d  247 (675)
T KOG0212|consen  168 FIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMD  247 (675)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccC
Confidence            8999999999999999999999988654321111  1245689999999999999999999999999887664431   2


Q ss_pred             HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHHHhcCCCChH-HHHHHHHHhHHhhhhhchhh
Q 007863          317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDL  393 (587)
Q Consensus       317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~i~~~~~~~~  393 (587)
                      .+...+.+..-+.++++.++..|+.++.++.+..|.+.  +...++..+..++.|.++. ++..+...=+.+.+..+.+.
T Consensus       248 ~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~  327 (675)
T KOG0212|consen  248 YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSER  327 (675)
T ss_pred             cccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhh
Confidence            35677888888899999999999999999998887654  3345666677777777663 55444433333333333221


Q ss_pred             H-----hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863          394 L-----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  466 (587)
Q Consensus       394 ~-----~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  466 (587)
                      .     ...++..+...+.+.....|.+++.++..+-...+.+.+  .+.+.+.++.-+.|++.+|-..++..++.++..
T Consensus       328 ~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  328 LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS  407 (675)
T ss_pred             hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence            1     135778888888999999999999999999888877654  367888899999999999999999999999874


Q ss_pred             hChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863          467 FGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  519 (587)
Q Consensus       467 ~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l  519 (587)
                      -..... -.++..+.+++.....-++..+...+.+++-.+.++.++..+-..+
T Consensus       408 ~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL  459 (675)
T KOG0212|consen  408 SNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL  459 (675)
T ss_pred             cccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence            332111 3345555666555555566667777888887777765544444433

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=3.4e-14  Score=134.39  Aligned_cols=366  Identities=14%  Similarity=0.142  Sum_probs=258.6

Q ss_pred             cCchhHHHHHHHHHHHHhcccC--h--hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC---CCcccchHHH
Q 007863          213 DDQDSVRLLAVEGCGALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPA  284 (587)
Q Consensus       213 d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~  284 (587)
                      ++++..+..+...+..+...-.  +  +-....++|.+..++. +.++.++..|+.+|.+++..-..   -......+|.
T Consensus        77 S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~  156 (514)
T KOG0166|consen   77 SDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPI  156 (514)
T ss_pred             CCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHH
Confidence            3334445555555554443322  1  2234467888877775 77799999999999999864221   2234467899


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcH-HHHHHHHHHHHhhhhhhc---hHHHHH
Q 007863          285 YVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILG---KDATIE  357 (587)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~---~~~~~~  357 (587)
                      |+.++.+++..|++.|+.+|+.++.....-   -....+++.+..++..++. ...+.+.+++..++..-.   +-....
T Consensus       157 fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~  236 (514)
T KOG0166|consen  157 FIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVA  236 (514)
T ss_pred             HHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHH
Confidence            999999999999999999999987642211   2223456666666655553 677788899999987652   123456


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---
Q 007863          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---  431 (587)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---  431 (587)
                      .++|.+..++.+.+++|...++++++.+...-...   .+...+.|.+..++...+..++..+++.++.++..-+..   
T Consensus       237 ~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~  316 (514)
T KOG0166|consen  237 PILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQV  316 (514)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHH
Confidence            78999999999999999999999999987543221   123467899999999999999999999998876532211   


Q ss_pred             hHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhChh-----hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863          432 FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPD-----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       432 ~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  505 (587)
                      ......+|.+..++. .+...+|+.|+-.++++..  |..     .+...++|.+...+...++..|..|+++|+++...
T Consensus       317 vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  317 VINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             HHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence            122456888888887 5666799999999999986  332     14478999999999999999999999999999876


Q ss_pred             cChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------HHHHH-----hHHHHHHHhcCCCCccHH
Q 007863          506 MGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVVEK-----SIRPCLVELSEDPDVDVR  570 (587)
Q Consensus       506 ~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~-----~i~~~l~~l~~d~~~~Vr  570 (587)
                      ...+.    +...+++.+..+|.-.+..+-..++.++..+.+..+.      +.+..     .-+..+..|....+.++.
T Consensus       395 g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy  474 (514)
T KOG0166|consen  395 GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIY  474 (514)
T ss_pred             CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHH
Confidence            55543    2345778888888766777777888888887654322      11111     224566667677777777


Q ss_pred             HHHHHHHHHH
Q 007863          571 FFATQALQSK  580 (587)
Q Consensus       571 ~~a~~al~~l  580 (587)
                      ..|.+.+++.
T Consensus       475 ~~A~~II~~y  484 (514)
T KOG0166|consen  475 KKAYKIIDTY  484 (514)
T ss_pred             HHHHHHHHHh
Confidence            7776666543

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.4e-13  Score=130.29  Aligned_cols=341  Identities=17%  Similarity=0.154  Sum_probs=247.6

Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC----CcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhCHH---
Q 007863          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILNPE---  314 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~---  314 (587)
                      .+.........+...+..+...+..+...-...    .....++|.++..++ +.++.++..|+.+|..++......   
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            344444444555555666666666655432211    112358899999886 667999999999999998854332   


Q ss_pred             HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--H-HHHHhHHHHHHHhcCCCCh-HHHHHHHHHhHHhhhhhc
Q 007863          315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--D-ATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG  390 (587)
Q Consensus       315 ~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~i~~~~~  390 (587)
                      ......+|.+..++.+++..|+..++.+++.++...+.  + .....+++.+..++....+ .....+.++|..++..-.
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            22345789999999999999999999999999854321  1 1223455666666666554 677788999999997653


Q ss_pred             hh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863          391 ID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  464 (587)
Q Consensus       391 ~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      +.   .....++|.+..++.+.+..|...++.++..+.......   .....++|.+..++......|+..|+.++|.++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            21   234678999999999999999999999999988654322   123457889999999999999999999999987


Q ss_pred             HHhChhh---hhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863          465 EEFGPDW---AMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       465 ~~~~~~~---~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~  537 (587)
                      ...+...   +....+|.+..++. ++...+|..|++++++|...-...   .+...++|.++.+++.....+|..|+++
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            5322221   34678999998887 667779999999999998622211   2456789999999999999999999999


Q ss_pred             HHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863          538 LQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       538 l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      ++.+...-.++    -+...+++.+-.++.-+|.++-..+..|+..+-++
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV  437 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence            99998765543    23345677777777777777766666676665543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=5.5e-14  Score=123.89  Aligned_cols=384  Identities=15%  Similarity=0.136  Sum_probs=273.2

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh--
Q 007863          162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS---EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--  236 (587)
Q Consensus       162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--  236 (587)
                      .+....+..+++++++.+..+++.++|+++-..+.....-   -+-+++.++..|. ..+|+.++.|+..++..-+..  
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhh
Confidence            3444555677889999999999999999887665432222   2344666777765 567999999999988763221  


Q ss_pred             hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 007863          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE  314 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  314 (587)
                      .-...-+..+.++-+.++..+|..+..+|..+.+....  ......-+|+++++++..+..||..|..+++.++-.-...
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R  242 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR  242 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence            11122344455588889999999999999888765432  2334457899999999999999999999999997643221


Q ss_pred             ----HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863          315 ----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       315 ----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  388 (587)
                          ..-++++|.+.+++.|++++++..|..++..++..-.  .+.....-+|.+.++++++.-..-.+..-++..+.-+
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH  322 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence                1124589999999999999999999999999875432  2223344679999999888766666666677666544


Q ss_pred             hchhhH--hhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863          389 IGIDLL--SQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR  462 (587)
Q Consensus       389 ~~~~~~--~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                      -+++..  ...++..+.+++. ..+..++..+...+..++....   ..++...-+|.+..++.|..-+||...-.+++.
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~  402 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ  402 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence            333321  1334555566665 4566688888888888776432   222334568888899999999999998888888


Q ss_pred             HHHHh--ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-H-------HHHhHHHHHHhhcCCCCccHHH
Q 007863          463 LAEEF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-I-------TCSQLLPVVINASKDRVPNIKF  532 (587)
Q Consensus       463 l~~~~--~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~-------~~~~~l~~l~~~l~d~~~~vR~  532 (587)
                      +.-.-  ...+....++|.+..+..+.+.++|-.++.++.+++.....- .       -.+.+-..+..++.+....+|.
T Consensus       403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~h  482 (550)
T KOG4224|consen  403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRH  482 (550)
T ss_pred             HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHH
Confidence            76432  222234678899999999999999999999999998744321 0       0234556677777887888888


Q ss_pred             HHHHHHHHHHhhhc
Q 007863          533 NVAKVLQSLIPIVD  546 (587)
Q Consensus       533 ~a~~~l~~l~~~~~  546 (587)
                      .+.+++.++.+...
T Consensus       483 ia~wTI~qLle~h~  496 (550)
T KOG4224|consen  483 IARWTIQQLLEDHD  496 (550)
T ss_pred             HHHHHHHHHHHhCC
Confidence            88888888877644

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=6.5e-10  Score=112.24  Aligned_cols=424  Identities=17%  Similarity=0.145  Sum_probs=269.7

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccC-hh
Q 007863          159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLE-PQ  236 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~-~~  236 (587)
                      +..+.+++.+...+.|.+..||..|++.+|.+....+. ...++.+.....+.+.- ++.....++-+|+.++..-- ..
T Consensus       337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~-~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP-ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH-HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            45678888888999999999999999999999999885 44444444444444433 46677788888888875421 12


Q ss_pred             hhhhchHHHHHHhcCC--------CchHHHHHHHHHHHHHHHHhCCCCccc---chH-HHHHHhcCCChHHHHHHHHHhH
Q 007863          237 DCVAHILPVIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTRS---DVV-PAYVRLLRDNEAEVRIAAAGKV  304 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~~~~~~~~---~l~-~~l~~~l~d~~~~vr~~a~~~l  304 (587)
                      ...+.++|.+.+.+.-        ....||.+|+-.+..++....+....+   .+. ..+...+-|++.++|.+|..++
T Consensus       416 s~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl  495 (1133)
T KOG1943|consen  416 SLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL  495 (1133)
T ss_pred             HHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence            2456788888876652        345799999999999988776543333   122 2334456899999999999888


Q ss_pred             HHHHHhhCH-----H-------------------------HHHHhHHHHHhHhcCC----CcHHHHHHHHHHHHhhhhhh
Q 007863          305 TKICRILNP-----E-------------------------LAIQHILPCVKELSSD----SSQHVRSALATVIMGMAPIL  350 (587)
Q Consensus       305 ~~l~~~~~~-----~-------------------------~~~~~~~~~l~~~~~d----~~~~vr~~a~~~l~~l~~~~  350 (587)
                      .+.....+.     +                         .+....-|.+..++..    =+..+|..++.++..+...-
T Consensus       496 qE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~  575 (1133)
T KOG1943|consen  496 QENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE  575 (1133)
T ss_pred             HHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh
Confidence            665443221     0                         0111122333333333    35678999999999976554


Q ss_pred             chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh----------hH--hhhhHHHHHHHhcCCC--cHHHHH
Q 007863          351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----------LL--SQSLLPAIVELAEDRH--WRVRLA  416 (587)
Q Consensus       351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~----------~~--~~~~~~~l~~~~~~~~--~~vr~~  416 (587)
                      + +...+..+|.++......+...|.++..+.+++....-.-          .+  ...++|.+....-++.  .-+|..
T Consensus       576 p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~  654 (1133)
T KOG1943|consen  576 P-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQA  654 (1133)
T ss_pred             H-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHH
Confidence            3 3334455666666666667888888888887776443110          00  0112333332222221  345666


Q ss_pred             HHHHHHHHHHhh---ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh--ChhhhhhchHHHHHhhhcCC-ccH
Q 007863          417 IIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDWAMQHIVPQVLEMINNP-HYL  490 (587)
Q Consensus       417 ~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~l~~~l~~~-~~~  490 (587)
                      ..+.+..+...-   ..+.+......++.+.+.+++ .+|.+|..+++.++..+  +++.....++......+.++ +..
T Consensus       655 ~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~  733 (1133)
T KOG1943|consen  655 TLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEER  733 (1133)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHH
Confidence            666665554321   123444555666667776667 89999999999998754  22222233555555555555 677


Q ss_pred             HHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhhhch-------HHHHHhHHHHHHHhc
Q 007863          491 YRMTILQAISLLAPVMGSEITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQ-------SVVEKSIRPCLVELS  562 (587)
Q Consensus       491 ~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~-------~~~~~~i~~~l~~l~  562 (587)
                      +|.....+++.+....=.....+.+...++... .|..+.-|...+.++..++...+.       +.+.+.++.++....
T Consensus       734 ~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYt  813 (1133)
T KOG1943|consen  734 IRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYT  813 (1133)
T ss_pred             HHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcc
Confidence            888888888777642222223445544444433 344888999999999999888762       355566777777778


Q ss_pred             CCCCccH----HHHHHHHHHHHHHHhh
Q 007863          563 EDPDVDV----RFFATQALQSKDQVMM  585 (587)
Q Consensus       563 ~d~~~~V----r~~a~~al~~l~~~~~  585 (587)
                      .|...||    |..|.+++..+-..+.
T Consensus       814 td~rGDVGswVReaAm~al~~~~~~l~  840 (1133)
T KOG1943|consen  814 TDSRGDVGSWVREAAMKALSSLLDTLS  840 (1133)
T ss_pred             cccCccHHHHHHHHHHHHHHhhhhhhc
Confidence            8887775    8888888888766554

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=3.2e-11  Score=117.11  Aligned_cols=386  Identities=17%  Similarity=0.158  Sum_probs=254.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHH
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP  244 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  244 (587)
                      +..+.+.+.|+|+.+|..|+..|..+--    +-+.+.++-.+.+...|..+.||+.|+.++.++.+.-+.  ..+.+..
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsIRv----p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e--~k~qL~e  183 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSIRV----PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE--QKDQLEE  183 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh--hHHHHHH
Confidence            3556778889999999888888877532    234455666677788888888999999888888765443  3457888


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchH---HHHHHhcCCChHHHHHHHHHhHHHHHHhhC---------
Q 007863          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV---PAYVRLLRDNEAEVRIAAAGKVTKICRILN---------  312 (587)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---------  312 (587)
                      .+..++.|.++.|--+|+.++..+|..-     .+-+-   .-+.+++.|-+..=+...+..|-+.+.+.=         
T Consensus       184 ~I~~LLaD~splVvgsAv~AF~evCPer-----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~  258 (968)
T KOG1060|consen  184 VIKKLLADRSPLVVGSAVMAFEEVCPER-----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSS  258 (968)
T ss_pred             HHHHHhcCCCCcchhHHHHHHHHhchhH-----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccc
Confidence            8888899999988888888888776421     01111   223344455554444455555555554310         


Q ss_pred             -------------------H---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCC
Q 007863          313 -------------------P---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       313 -------------------~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  370 (587)
                                         +   +.-...++...+.++.+.++.|-.++++.+..++...    -...+...+..+|...
T Consensus       259 ~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~----~~~~i~kaLvrLLrs~  334 (968)
T KOG1060|consen  259 LEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN----QVTKIAKALVRLLRSN  334 (968)
T ss_pred             cccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH----HHHHHHHHHHHHHhcC
Confidence                               0   1112345666677788888888888888887776332    2344556666666653


Q ss_pred             ChHHHHHHHHHhHHhhhhhc--------------------------------hhhHhhhhHHHHHHHhcCCCcHHHHHHH
Q 007863          371 FPDVRLNIISKLDQVNQVIG--------------------------------IDLLSQSLLPAIVELAEDRHWRVRLAII  418 (587)
Q Consensus       371 ~~~vr~~a~~~l~~i~~~~~--------------------------------~~~~~~~~~~~l~~~~~~~~~~vr~~~~  418 (587)
                       .++|...+.++..++..-.                                .+.-...+++.+...+.+.+.++-..++
T Consensus       335 -~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV  413 (968)
T KOG1060|consen  335 -REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAV  413 (968)
T ss_pred             -CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHH
Confidence             6777777777776653210                                0111244666666677777777888888


Q ss_pred             HHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC-ccHHHHHHHH
Q 007863          419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP-HYLYRMTILQ  497 (587)
Q Consensus       419 ~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~~  497 (587)
                      +++|..+...+.  +.++.+.-++.++.+++..|-.+++..+..+...-..+  ...++..+..++..- -+.-|.+.+|
T Consensus       414 ~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~--h~~ii~~La~lldti~vp~ARA~IiW  489 (968)
T KOG1060|consen  414 KAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE--HLEILFQLARLLDTILVPAARAGIIW  489 (968)
T ss_pred             HHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH--HHHHHHHHHHHhhhhhhhhhhceeee
Confidence            899888877654  35678888888899999999999999999988754433  234666666655332 3556778888


Q ss_pred             HHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh-cCCCCccHHHHHH
Q 007863          498 AISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL-SEDPDVDVRFFAT  574 (587)
Q Consensus       498 ~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l-~~d~~~~Vr~~a~  574 (587)
                      .++..+....  .+.+.++..+.+-+.|+.+.||..++..-..+.-.-. +.+ +.+..-+.++ --|...++|.++.
T Consensus       490 Lige~~e~vp--ri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~~~-~~~-kll~~Yv~~L~~yD~sYDiRDRaR  563 (968)
T KOG1060|consen  490 LIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLTNI-DQT-KLLVQYVFELARYDLSYDIRDRAR  563 (968)
T ss_pred             eehhhhhhcc--hhchHHHHHHHHhhccccchhhHHHHHhhhhheEech-hhH-HHHHHHHHHHhccCCCcchhHHHH
Confidence            8887776432  2345666677777889999999999888887754322 222 2333333343 4577888887764

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.56  E-value=3.8e-11  Score=119.61  Aligned_cols=374  Identities=16%  Similarity=0.153  Sum_probs=252.9

Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHH
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVP  283 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~  283 (587)
                      +...+++.+.+.-..++.+|..+.+........+.+.+.+...+.++++.||..+++.++.++..-..   -.....+++
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~  122 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP  122 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence            44445555555556788889998888877666888999999999999999999999998887643211   123457899


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHh
Q 007863          284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQ  358 (587)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~  358 (587)
                      .+..++.|++.+|...|+++|..+++.-..-  .+.+...+.+..++..++..+|..+.+.+..++..-...   .....
T Consensus       123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sg  202 (503)
T PF10508_consen  123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSG  202 (503)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence            9999999999999999999999998742211  112334777888887778889999999888887553211   12234


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHhcCC--CcHHH----HHHHHHHHHHHHhhCh
Q 007863          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDR--HWRVR----LAIIEYIPLLASQLGV  430 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~~~--~~~vr----~~~~~~l~~l~~~~~~  430 (587)
                      +++.+...+++++.-+|..++..+..++..-..-.  ....+++.+.+.+.+.  +++.+    -..++..+.++.. .+
T Consensus       203 ll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~  281 (503)
T PF10508_consen  203 LLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SP  281 (503)
T ss_pred             HHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-Ch
Confidence            78888888999999999999999999987322211  2345778887776542  23111    1233455555543 22


Q ss_pred             hhH---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh-h-------hhchHHHHHhhhcCCccHHHHHHHHHH
Q 007863          431 GFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-A-------MQHIVPQVLEMINNPHYLYRMTILQAI  499 (587)
Q Consensus       431 ~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~-------~~~~~~~l~~~l~~~~~~~r~~a~~~l  499 (587)
                      ..+   .+.++..+...+.+.+...+..|+.++|.++....... .       ...++..+..........+|..++.++
T Consensus       282 ~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al  361 (503)
T PF10508_consen  282 QEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHAL  361 (503)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            222   25667777788889999999999999999986443221 1       133444445555666678999999999


Q ss_pred             HHhhcccCh---H--------HH---HHhHHH-HHHhhcCCCCccHHHHHHHHHHHHHhhhch-HHH--HHhHHHHHHHh
Q 007863          500 SLLAPVMGS---E--------IT---CSQLLP-VVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SVV--EKSIRPCLVEL  561 (587)
Q Consensus       500 ~~l~~~~~~---~--------~~---~~~~l~-~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~~--~~~i~~~l~~l  561 (587)
                      +.+......   +        +|   .+.-.. .+...++.|-+++|.++.+.+..++.+-.. ..+  ...+++.+..-
T Consensus       362 ~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr  441 (503)
T PF10508_consen  362 ASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDR  441 (503)
T ss_pred             HHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCC
Confidence            999643322   1        11   111122 677888999999999999999999876322 111  12344444444


Q ss_pred             cCCCCccHHHHHHHHHHHHH
Q 007863          562 SEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       562 ~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ..+++.+++..=...+..+.
T Consensus       442 ~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  442 STETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             CCCCCHHHHHHHHHHHHHHH
Confidence            45666666665555555554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=3.8e-11  Score=116.61  Aligned_cols=396  Identities=16%  Similarity=0.142  Sum_probs=262.0

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhh
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA  240 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (587)
                      ...++|-+.+.....+.+||+-+--.|-..++.-++...  --+..+++-++|+++-+|..|++.+..+--.    .+.+
T Consensus        69 vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~L~DpN~LiRasALRvlSsIRvp----~IaP  142 (968)
T KOG1060|consen   69 VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKALKDPNQLIRASALRVLSSIRVP----MIAP  142 (968)
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh----hHHH
Confidence            466778788888888999999888777777765433221  1256788899999999999999999876321    1344


Q ss_pred             chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  320 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  320 (587)
                      -++-.+.++..|.++.||+.|+.++.++... +.+. +.++...+-.++.|.++-|--+|+.++..++-.  .-...+.-
T Consensus       143 I~llAIk~~~~D~s~yVRk~AA~AIpKLYsL-d~e~-k~qL~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLIHkn  218 (968)
T KOG1060|consen  143 IMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL-DPEQ-KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLIHKN  218 (968)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC-Chhh-HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHhhHH
Confidence            4555667788999999999999999987653 3333 347999999999999999999999999988652  11222222


Q ss_pred             HHHHhHhcCCCcHHHHHHHHHHHHhhhhhh-c-h-----------------------------HHHHHhHHHHHHHhcCC
Q 007863          321 LPCVKELSSDSSQHVRSALATVIMGMAPIL-G-K-----------------------------DATIEQLLPIFLSLLKD  369 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~-~-----------------------------~~~~~~l~~~l~~~l~d  369 (587)
                      ...+.+++-|-+.+=+..++..|...+.+. . +                             +.-...++.....++..
T Consensus       219 yrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S  298 (968)
T KOG1060|consen  219 YRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQS  298 (968)
T ss_pred             HHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhc
Confidence            333445556666666666666666655432 0 0                             11123345556677888


Q ss_pred             CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH----------------
Q 007863          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----------------  433 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----------------  433 (587)
                      .++.|..++++.+-.+++....    ..+...+..++.+ +..+|...+..+..++..- +..|                
T Consensus       299 ~n~sVVmA~aql~y~lAP~~~~----~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~-~~lF~P~lKsFfv~ssDp~~  372 (968)
T KOG1060|consen  299 RNPSVVMAVAQLFYHLAPKNQV----TKIAKALVRLLRS-NREVQYVVLQNIATISIKR-PTLFEPHLKSFFVRSSDPTQ  372 (968)
T ss_pred             CCcHHHHHHHhHHHhhCCHHHH----HHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcc-hhhhhhhhhceEeecCCHHH
Confidence            8999999999998888765422    2334444444332 3344555555555554321 0000                


Q ss_pred             -----------------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHH
Q 007863          434 -----------------DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       434 -----------------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~  496 (587)
                                       ...+++-+...+.+.+.++-..|++++|.++...+.  ..+..+..+..++.+.+..|-..++
T Consensus       373 vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV  450 (968)
T KOG1060|consen  373 VKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGS--VTDTCLNGLVQLLSSHDELVVAEAV  450 (968)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCc--hhhHHHHHHHHHHhcccchhHHHHH
Confidence                             123455555566777777888888888888877654  2467788888888888888888888


Q ss_pred             HHHHHhhcccChHHHHHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHH
Q 007863          497 QAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQ  575 (587)
Q Consensus       497 ~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~  575 (587)
                      ..|..+.+.-+.+.  .+++..+.+++.. ..+.-|...++.++..+..++  .+...++..+.+-..|....|+..+..
T Consensus       451 ~vIk~Llq~~p~~h--~~ii~~La~lldti~vp~ARA~IiWLige~~e~vp--ri~PDVLR~laksFs~E~~evKlQILn  526 (968)
T KOG1060|consen  451 VVIKRLLQKDPAEH--LEILFQLARLLDTILVPAARAGIIWLIGEYCEIVP--RIAPDVLRKLAKSFSDEGDEVKLQILN  526 (968)
T ss_pred             HHHHHHHhhChHHH--HHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcc--hhchHHHHHHHHhhccccchhhHHHHH
Confidence            88888887554432  2345555555532 367888888888888877643  233455555566567778888776655


Q ss_pred             HHH
Q 007863          576 ALQ  578 (587)
Q Consensus       576 al~  578 (587)
                      .-.
T Consensus       527 L~a  529 (968)
T KOG1060|consen  527 LSA  529 (968)
T ss_pred             hhh
Confidence            433

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=2.9e-12  Score=113.19  Aligned_cols=375  Identities=17%  Similarity=0.180  Sum_probs=254.7

Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccChhhhh---hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccch
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDV  281 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l  281 (587)
                      +..++++.++.+...+...++.++-........   ..+-+++.+...|. ..+|..+..|+.+++..-..  ......-
T Consensus        90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~sGa  168 (550)
T KOG4224|consen   90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARSGA  168 (550)
T ss_pred             HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhccc
Confidence            344677788899999999999888766542221   22345566666554 56788888999888765221  1112234


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc-hH---HH
Q 007863          282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG-KD---AT  355 (587)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~---~~  355 (587)
                      +..+.++-+.++..||..+..+|..+.......  .+...-+|.+..++...+..+|..++.+++.++-.-- ..   ..
T Consensus       169 L~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqa  248 (550)
T KOG4224|consen  169 LEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQA  248 (550)
T ss_pred             hhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhc
Confidence            555666888899999999999999887754433  2234568999999999999999999999998863321 11   12


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH
Q 007863          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  433 (587)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~  433 (587)
                      .+.++|.+..++.|.++.|+..|..+|..++..-..  +.....-+|.+.++++++.-..-.+.+-++..++-+-+.+..
T Consensus       249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~l  328 (550)
T KOG4224|consen  249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVL  328 (550)
T ss_pred             ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccc
Confidence            356899999999999999999999999998865322  122335689999999888766655555555544433333221


Q ss_pred             --HHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhh--cc
Q 007863          434 --DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLA--PV  505 (587)
Q Consensus       434 --~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~  505 (587)
                        ...++..+..++.-. +.+++..|...|..++......   ++....+|.+.+++.|....+|...-.++..++  ..
T Consensus       329 I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~  408 (550)
T KOG4224|consen  329 IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN  408 (550)
T ss_pred             eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence              122344455666544 4559999999999887644332   345678999999988886656555555555444  43


Q ss_pred             cChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-HH-------HHHhHHHHHHHhcCCCCccHHHHHHHHH
Q 007863          506 MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-SV-------VEKSIRPCLVELSEDPDVDVRFFATQAL  577 (587)
Q Consensus       506 ~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-------~~~~i~~~l~~l~~d~~~~Vr~~a~~al  577 (587)
                      .........++|.+..+..+.+.+||-+++.+|..++...+. ..       -.+.+---|...+...+..+|..|.+++
T Consensus       409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI  488 (550)
T KOG4224|consen  409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTI  488 (550)
T ss_pred             cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333333466889999999999999999999999999876432 00       0123344455555666667777777777


Q ss_pred             HHHHH
Q 007863          578 QSKDQ  582 (587)
Q Consensus       578 ~~l~~  582 (587)
                      .++.+
T Consensus       489 ~qLle  493 (550)
T KOG4224|consen  489 QQLLE  493 (550)
T ss_pred             HHHHH
Confidence            66643

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=6.3e-11  Score=115.79  Aligned_cols=435  Identities=14%  Similarity=0.153  Sum_probs=286.9

Q ss_pred             hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhH
Q 007863          121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLK  200 (587)
Q Consensus       121 ~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~  200 (587)
                      +....+.+++..+.+.+ ...+. -+.++-..+....+......++.+..-+.|++|.+|..|.+.++.+-    -+...
T Consensus        46 DvSslF~dvvk~~~T~d-lelKK-lvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~----v~~i~  119 (734)
T KOG1061|consen   46 DVSSLFPDVVKCMQTRD-LELKK-LVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLR----VDKIT  119 (734)
T ss_pred             chHhhhHHHHhhcccCC-chHHH-HHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEe----ehHHH
Confidence            34444445555444444 22222 23333334444545666778888999999999999999999888753    24566


Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc---
Q 007863          201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---  277 (587)
Q Consensus       201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---  277 (587)
                      .++..-+...++|+++.+|..++.+..++...-++......+++.+..++.|.++.|-..|..++..+...-.....   
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l  199 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLEL  199 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccc
Confidence            77888888899999999999999999998776555445667899999999999999999999999998875432111   


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HH
Q 007863          278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DA  354 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~  354 (587)
                      ...++..+...+++-+..   +-+..+..+.....++. -...+...+...+.+.+..|-..+.+.+-.....+..  +.
T Consensus       200 ~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~  276 (734)
T KOG1061|consen  200 NPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNEL  276 (734)
T ss_pred             cHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHH
Confidence            112333333333332222   22333444444443321 1245666666777778888887888777777666553  33


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--------------------------------hhHhhhhHHHH
Q 007863          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------------------------------DLLSQSLLPAI  402 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------------------------------~~~~~~~~~~l  402 (587)
                      ....+-|.+..++.... ++...++..+..+......                                +...+.+++.+
T Consensus       277 ~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El  355 (734)
T KOG1061|consen  277 LFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAEL  355 (734)
T ss_pred             HHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHH
Confidence            44555566666665554 7777777777766543211                                11123344444


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh
Q 007863          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE  482 (587)
Q Consensus       403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  482 (587)
                      .....+-+.+.-..++++++.++-.....   ..++..++.+++-...-|.+.++..+..+.+.+...+  +.+++.+..
T Consensus       356 ~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~vv~~l~~  430 (734)
T KOG1061|consen  356 KEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ESVVAILCE  430 (734)
T ss_pred             HHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hhhhhhhcc
Confidence            55555666676677788888877655443   5678888888887777778888888888888776552  555555544


Q ss_pred             hhcC-CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863          483 MINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  561 (587)
Q Consensus       483 ~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l  561 (587)
                      .+.. .++.-|.+-+|.++..++.+...   .+++..+.+...|+...|+...+.+.-.+.-..+. ...+.+...|...
T Consensus       431 ~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~-~tq~~l~~vL~~~  506 (734)
T KOG1061|consen  431 NLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLELLTAAIKLFLKKPT-ETQELLQGVLPLA  506 (734)
T ss_pred             cccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHhhh
Confidence            3322 35678999999999998877654   67888888889999999998888888777655443 3334445555555


Q ss_pred             cCCC-CccHHHHHH
Q 007863          562 SEDP-DVDVRFFAT  574 (587)
Q Consensus       562 ~~d~-~~~Vr~~a~  574 (587)
                      ..|. ++++|..+.
T Consensus       507 ~~d~~~~dlrDr~l  520 (734)
T KOG1061|consen  507 TADTDNPDLRDRGL  520 (734)
T ss_pred             hccccChhhhhhHH
Confidence            5555 468988765

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.49  E-value=1.1e-09  Score=103.07  Aligned_cols=472  Identities=12%  Similarity=0.064  Sum_probs=276.1

Q ss_pred             hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHH
Q 007863           83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT  162 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~  162 (587)
                      .+..++-.+.++.++.|+..|+..-.++..+...- ++ ..-..-.++..+...-...++-.|+.-+-.+   .+++...
T Consensus        62 ~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~t-ed-vlm~tssiMkD~~~g~~~~~kp~AiRsL~~V---id~~tv~  136 (898)
T COG5240          62 TATNLFFAILKLFQHKDLYLRQCVYSAIKELSKLT-ED-VLMGTSSIMKDLNGGVPDDVKPMAIRSLFSV---IDGETVY  136 (898)
T ss_pred             HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhcc-hh-hhHHHHHHHHhhccCCccccccHHHHHHHHh---cCcchhh
Confidence            34566667888899999999998888887766532 11 1111112222222222334555555433222   2233334


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhccc------------CchhHHHHHHHHHHH
Q 007863          163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQD------------DQDSVRLLAVEGCGA  228 (587)
Q Consensus       163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d------------~~~~vr~~a~~~l~~  228 (587)
                      .+-.++.+..-++.+.+|.++.-.--.+......  ..+..+.......+.+.            ..+-.+-.|+..|-.
T Consensus       137 ~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq  216 (898)
T COG5240         137 DFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQ  216 (898)
T ss_pred             hHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHH
Confidence            4555666777788888887765443333322111  01111111111111110            111223333333322


Q ss_pred             HhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC-CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 007863          229 LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG-PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI  307 (587)
Q Consensus       229 l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  307 (587)
                      +-..   +  .-..+..+..+..+.+-+-..+....+..+...+. .......+.|.+...++|.-..|...+++++..+
T Consensus       217 ~kr~---d--kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~  291 (898)
T COG5240         217 SKRT---D--KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCAL  291 (898)
T ss_pred             Hhcc---c--HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence            2110   0  00111222222222211111111111111111111 1122345778888888898889999999999888


Q ss_pred             HHhh-CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863          308 CRIL-NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       308 ~~~~-~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  386 (587)
                      +... +++. ....+..+..+++.+....|-+|.+.+.+++...+....  ..-+-+..++.|.+..+-..|+..|-+  
T Consensus       292 ~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~--vcN~evEsLIsd~Nr~IstyAITtLLK--  366 (898)
T COG5240         292 SEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVS--VCNKEVESLISDENRTISTYAITTLLK--  366 (898)
T ss_pred             HHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceee--ecChhHHHHhhcccccchHHHHHHHHH--
Confidence            7754 5544 477888889999999999999999999999876553321  223556777888877776666555543  


Q ss_pred             hhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHH
Q 007863          387 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       387 ~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~  465 (587)
                        .|.++..+.++..|..++.|-+...+.-++.++..++-.++.+  ...++..+...+ +..-.+.+..++.++..+.+
T Consensus       367 --TGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k--~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~  442 (898)
T COG5240         367 --TGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK--KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAME  442 (898)
T ss_pred             --cCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH--HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence              2444445677888888887766666666777777777766544  233444444433 45567888999999998887


Q ss_pred             HhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh----HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863          466 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----EITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       466 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l  541 (587)
                      .....  .+..+..+..++.|-.+.  +.++..++-+++..+.    ..|..++...+.    =++..||.+|+.+|...
T Consensus       443 ~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLskf  514 (898)
T COG5240         443 NDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALSKF  514 (898)
T ss_pred             hCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHHHh
Confidence            65433  466777788888776543  4566666666654332    234444444332    25789999999999988


Q ss_pred             HhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          542 IPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       542 ~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +-........+.+...|..+++|.|.+||..|.-++..+.
T Consensus       515 ~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         515 ALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             ccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            7776655566778888889999999999999998887654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.46  E-value=7.9e-10  Score=110.26  Aligned_cols=360  Identities=17%  Similarity=0.173  Sum_probs=227.3

Q ss_pred             hhHHhhhhhhccCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhH
Q 007863          143 VSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSV  218 (587)
Q Consensus       143 ~~a~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~v  218 (587)
                      ..++.++..+.....+. ....+.+.+...+.++++.||..++..++.+...-..   ......+++.+...+.+++..|
T Consensus        56 ~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~V  135 (503)
T PF10508_consen   56 ELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSV  135 (503)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHH
Confidence            44556666666655544 5788889999999999999999999999888754322   1123567888889999999999


Q ss_pred             HHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCCh
Q 007863          219 RLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNE  293 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~  293 (587)
                      ...|+.+|..+++.-..  .-+.+...+.+..++...+..+|.-+.+.+..++.....   ......+++.+...++++|
T Consensus       136 a~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD  215 (503)
T PF10508_consen  136 AKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD  215 (503)
T ss_pred             HHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc
Confidence            99999999999875332  112334477888888777888898888888887654221   1112358888999999999


Q ss_pred             HHHHHHHHHhHHHHHHhhCHHHH--HHhHHHHHhHhc----CCC-cHHH-HHHHHHHHHhhhhhhchHHH---HHhHHHH
Q 007863          294 AEVRIAAAGKVTKICRILNPELA--IQHILPCVKELS----SDS-SQHV-RSALATVIMGMAPILGKDAT---IEQLLPI  362 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~~----~d~-~~~v-r~~a~~~l~~l~~~~~~~~~---~~~l~~~  362 (587)
                      .-+|..++..+..++..-..-.+  ...+++.+...+    .|+ ...+ -......++.++.. ++...   .+.++..
T Consensus       216 iLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~  294 (503)
T PF10508_consen  216 ILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLER  294 (503)
T ss_pred             HHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHH
Confidence            99999999999999883211111  123555555554    344 1111 22333555566554 22222   2456666


Q ss_pred             HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHh--------hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---
Q 007863          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---  431 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---  431 (587)
                      +..++.+.++..+..|+.+++.++.........        +.++..+..........+|..++.+++.+....+..   
T Consensus       295 l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~  374 (503)
T PF10508_consen  295 LFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDN  374 (503)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchH
Confidence            677788889999999999999998654322221        223344444445566778888888888875433220   


Q ss_pred             hH----HH--------HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-Chhhh--hhchHHHHHhhhcCCccHHHHHHH
Q 007863          432 FF----DD--------KLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDWA--MQHIVPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       432 ~~----~~--------~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~--~~~~~~~l~~~l~~~~~~~r~~a~  496 (587)
                      .+    ..        .....++..++.+.+++|.++...+..++..- |...+  .+.++..+.+.-.+++...++.=.
T Consensus       375 ~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~  454 (503)
T PF10508_consen  375 DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKY  454 (503)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHH
Confidence            00    00        01115566667777777777777777766431 11111  134444444444444544554444


Q ss_pred             HHHHHhh
Q 007863          497 QAISLLA  503 (587)
Q Consensus       497 ~~l~~l~  503 (587)
                      .++..+.
T Consensus       455 ~ii~~l~  461 (503)
T PF10508_consen  455 DIIKALA  461 (503)
T ss_pred             HHHHHHH
Confidence            4444444

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.41  E-value=6.3e-11  Score=103.93  Aligned_cols=339  Identities=13%  Similarity=0.110  Sum_probs=222.7

Q ss_pred             chHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H
Q 007863          241 HILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E  314 (587)
Q Consensus       241 ~l~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~  314 (587)
                      .++|.+.+++ +.........|+.+|.+++.....+.   .....+|.|++++.+.+.+||..++.+|+.++.....  +
T Consensus       114 GvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD  193 (526)
T COG5064         114 GVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRD  193 (526)
T ss_pred             cccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHH
Confidence            4556666666 44555667788999998876433221   1235789999999999999999999999998653211  1


Q ss_pred             -HHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863          315 -LAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       315 -~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  388 (587)
                       ......+..+..++.++  +-..-+.+...++.++..-.   ........+|.+.+++...+++|-..|+++++.+...
T Consensus       194 ~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg  273 (526)
T COG5064         194 YVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDG  273 (526)
T ss_pred             HHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccC
Confidence             11223344444444433  23556667788888876542   2335667899999999999999999999999988754


Q ss_pred             hchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863          389 IGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKR  462 (587)
Q Consensus       389 ~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                      -...   .+...+.+.+.+++.+++..+..-+++.++.+.+.-..+   .+.-..++.+..++.++...+|+.||-.+..
T Consensus       274 ~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN  353 (526)
T COG5064         274 PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN  353 (526)
T ss_pred             cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence            2211   112245677888999999888888888888776533211   1112346667777888888999999999988


Q ss_pred             HHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC-hHHHH-----HhHHHHHHhhcCCCCccHHHH
Q 007863          463 LAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITC-----SQLLPVVINASKDRVPNIKFN  533 (587)
Q Consensus       463 l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~-----~~~l~~l~~~l~d~~~~vR~~  533 (587)
                      +.......   .+...++|.+..++..-++.+|..|++++.+...... .....     ..++..+..++.-.+-.+-..
T Consensus       354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev  433 (526)
T COG5064         354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEV  433 (526)
T ss_pred             cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhh
Confidence            76422211   1346789999999999999999999999999876332 22222     223344555554333335555


Q ss_pred             HHHHHHHHHhhhch------------HHHH--HhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863          534 VAKVLQSLIPIVDQ------------SVVE--KSIRPCLVELSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       534 a~~~l~~l~~~~~~------------~~~~--~~i~~~l~~l~~d~~~~Vr~~a~~al~~  579 (587)
                      ++.++..+.+.-..            ..+.  ...+..+..+....+.+|-..|...+..
T Consensus       434 ~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~  493 (526)
T COG5064         434 ALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEK  493 (526)
T ss_pred             hHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHH
Confidence            67777766543211            1121  2356777888777777777666655543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=1.1e-08  Score=103.80  Aligned_cols=456  Identities=15%  Similarity=0.102  Sum_probs=272.5

Q ss_pred             hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhh-cCCCCcchhhHHhhhhhhccCC--CHHHHH
Q 007863           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA-AGEWFTARVSSCGLFHVAYPSA--PEALKT  162 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~-~~~~~~~r~~a~~l~~~~~~~~--~~~~~~  162 (587)
                      .++.-|...++|.|..||-.|++.++.+...++.+-... ++.-+..+. .-+....-..++-+++.++.+.  .+....
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~  419 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLE  419 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence            444445555689999999999999999999998653333 333333322 2222223335666666665443  345677


Q ss_pred             HHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHHhhhhhHH---HHH-HHHHHhcccCchhHHHHHHHHHHHHh
Q 007863          163 ELRTIYRQLCQD--------DMPMVRRSAATNLGKFAATVEAAHLKS---EIM-SIFEELTQDDQDSVRLLAVEGCGALG  230 (587)
Q Consensus       163 ~l~~~l~~l~~~--------~~~~vR~~a~~~l~~l~~~~~~~~~~~---~i~-~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                      .++|++...+.=        ....||.+|+..+-.++.........+   .+. .++...+-|.+-++|++|..++....
T Consensus       420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~V  499 (1133)
T KOG1943|consen  420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENV  499 (1133)
T ss_pred             HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHh
Confidence            888888776542        346799999999999988776544444   222 34455567888899999888776654


Q ss_pred             cccCh------------------------------hhhhhchHHHHHHh----cCCCchHHHHHHHHHHHHHHHHhCCCC
Q 007863          231 KLLEP------------------------------QDCVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEP  276 (587)
Q Consensus       231 ~~~~~------------------------------~~~~~~l~~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~~~  276 (587)
                      ...+.                              ..+....-|++..+    +.+-+..+|..++.+|.++...-++. 
T Consensus       500 GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~-  578 (1133)
T KOG1943|consen  500 GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKY-  578 (1133)
T ss_pred             ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHh-
Confidence            33221                              01111223333333    34557899999999999987654432 


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-----H-------HHhHHHHHhHhcCCC--cHHHHHHHHHH
Q 007863          277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-----A-------IQHILPCVKELSSDS--SQHVRSALATV  342 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----~-------~~~~~~~l~~~~~d~--~~~vr~~a~~~  342 (587)
                      ..+..+|.+.......+...|..+..+.+.+...+..-.     .       ...+++.+...--+.  ..-.|.+.+..
T Consensus       579 ~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~  658 (1133)
T KOG1943|consen  579 LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKF  658 (1133)
T ss_pred             hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHH
Confidence            234456666666666778888888888777755432110     0       011222222111111  24456666665


Q ss_pred             HHhhhhhh---chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--hhHhhhhHHHHHHHhcCC-CcHHHHH
Q 007863          343 IMGMAPIL---GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR-HWRVRLA  416 (587)
Q Consensus       343 l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~~~-~~~vr~~  416 (587)
                      +..+...-   -.+...+.....+.+.+.+++ .+|.++.++++.++..+-.  +.....++..+..-+.+. +.++|..
T Consensus       659 Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g  737 (1133)
T KOG1943|consen  659 IEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRG  737 (1133)
T ss_pred             HHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHH
Confidence            55543211   112333334445555565666 8999999999999876522  111122444444444444 6778887


Q ss_pred             HHHHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChh-------hhhhchHHHHHhhhcCC-
Q 007863          417 IIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPD-------WAMQHIVPQVLEMINNP-  487 (587)
Q Consensus       417 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~~~~~l~~~l~~~-  487 (587)
                      ..-.++.+....=.-...+.+...++... .|..++-|...+.++..++...+..       .+.+.++..+.+...|. 
T Consensus       738 ~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~r  817 (1133)
T KOG1943|consen  738 LILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSR  817 (1133)
T ss_pred             HHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccC
Confidence            77766665532211112233444444333 3447788999999999998877722       24455666666655554 


Q ss_pred             ---ccHHHHHHHHHHHHhhcccCh-----HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863          488 ---HYLYRMTILQAISLLAPVMGS-----EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       488 ---~~~~r~~a~~~l~~l~~~~~~-----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                         ...+|.+|+.++..+......     +.....++..++.-..++....|..++.++.++...
T Consensus       818 GDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~  882 (1133)
T KOG1943|consen  818 GDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH  882 (1133)
T ss_pred             ccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence               356999999999998765442     223444555555556666777788888888887655

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.37  E-value=4.8e-09  Score=98.74  Aligned_cols=294  Identities=11%  Similarity=0.098  Sum_probs=202.9

Q ss_pred             hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC
Q 007863          197 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP  276 (587)
Q Consensus       197 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~  276 (587)
                      ..+..++.|++...++|+-+.|...+++.+..++..--..+.....+..+..+++......|.+|++.|..++...+...
T Consensus       259 ~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         259 SQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             hHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence            56778899999999999989999999998888776543333566778888899999999999999999999998765432


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHH
Q 007863          277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI  356 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  356 (587)
                      .  ..-+-+-.++.|.+..+...|+.   .+.+. |.+.-.+.++..+..+..|-+...+.-++.++..++-.|+.+.  
T Consensus       339 ~--vcN~evEsLIsd~Nr~IstyAIT---tLLKT-Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--  410 (898)
T COG5240         339 S--VCNKEVESLISDENRTISTYAIT---TLLKT-GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--  410 (898)
T ss_pred             e--ecChhHHHHhhcccccchHHHHH---HHHHc-CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--
Confidence            1  12344566777877555555544   44443 4444457778888888888888888888888888887776432  


Q ss_pred             HhHHHHHHHhc-CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-H
Q 007863          357 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-D  434 (587)
Q Consensus       357 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~  434 (587)
                      ..++..+...| +...-+.+..+..++..+.+.....  .+..+..++..++|..+.  +-+++.++.+++..+...- .
T Consensus       411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~  486 (898)
T COG5240         411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPG  486 (898)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcc
Confidence            12334444333 3456778888888888888775432  356788888888886543  2344555555554321111 1


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA  503 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~  503 (587)
                      .++..++.+.+ =++.-||.+|+.+|..+.-.....+..+.+...+...++|.+..+|..|..++..+-
T Consensus       487 ~yvrhIyNR~i-LEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         487 KYVRHIYNRLI-LENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             hHHHHHHHHHH-HhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            22333333333 346679999999999887655444444667777888899999999999998887764

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=1.6e-08  Score=99.19  Aligned_cols=244  Identities=10%  Similarity=0.095  Sum_probs=141.6

Q ss_pred             HhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh
Q 007863          287 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL  366 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  366 (587)
                      +++..++.++|..+++.|..+...-.  .....--..+..+++|++..+|..|.+..-.+...    .....++.-+..+
T Consensus       320 kFL~n~d~NirYvaLn~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~----~Nv~~mv~eLl~f  393 (866)
T KOG1062|consen  320 KFLLNRDNNIRYVALNMLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNE----SNVRVMVKELLEF  393 (866)
T ss_pred             HHhcCCccceeeeehhhHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHH
Confidence            33444555667777666666655311  11233345677888999999999999887777633    2233444556666


Q ss_pred             cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHHHHHHHHHHHHc
Q 007863          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFDDKLGALCMQWL  445 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~l~~~l  445 (587)
                      |...+++.+...+..+..+++.+.++..  ..+..+...+...-.-|+..+...+-.+.... +... ......+.....
T Consensus       394 L~~~d~~~k~~~as~I~~laEkfaP~k~--W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~-~y~~~rLy~a~~  470 (866)
T KOG1062|consen  394 LESSDEDFKADIASKIAELAEKFAPDKR--WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELH-EYAVLRLYLALS  470 (866)
T ss_pred             HHhccHHHHHHHHHHHHHHHHhcCCcch--hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchh-hHHHHHHHHHHh
Confidence            6666889999999999999988877642  45556555555443334444444333333222 2111 111111111111


Q ss_pred             C-----CCchHHHHHHHHHHHHHHHHhCh----h----hhhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChHH
Q 007863          446 K-----DKVYSIRDAAANNVKRLAEEFGP----D----WAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEI  510 (587)
Q Consensus       446 ~-----d~~~~vr~~a~~~l~~l~~~~~~----~----~~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~  510 (587)
                      .     -........|.-++|+....+-.    +    .-.+.++..+.+.+..  .+..+|.-++.++..+...+... 
T Consensus       471 ~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~-  549 (866)
T KOG1062|consen  471 EDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS-  549 (866)
T ss_pred             hhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc-
Confidence            1     22334566777888877643211    0    0124456656555432  34778888999998888755443 


Q ss_pred             HHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863          511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l  541 (587)
                       .+++-..+..+..+-+..+++.+.+.=..+
T Consensus       550 -~~ri~~lI~~~~~s~~~elQQRa~E~~~l~  579 (866)
T KOG1062|consen  550 -SERIKQLISSYKSSLDTELQQRAVEYNALF  579 (866)
T ss_pred             -HHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence             455666666667777888888887754433

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=7.1e-09  Score=101.68  Aligned_cols=434  Identities=12%  Similarity=0.096  Sum_probs=261.4

Q ss_pred             hhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 007863          125 HFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEI  203 (587)
Q Consensus       125 ~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i  203 (587)
                      .++-++.+..+.| +........-.++.+...++++....+.|-+..++++.++.||+.|+.+...+....  +...+.+
T Consensus       103 dvllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~--P~l~e~f  180 (866)
T KOG1062|consen  103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV--PDLVEHF  180 (866)
T ss_pred             HHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC--chHHHHh
Confidence            3444555544443 222222222334444556678899999999999999999999999999999888765  4577788


Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhcccCh-----hhhhhchHHHHHHhcCC-----------CchHHHHHHHHHHHH
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----QDCVAHILPVIVNFSQD-----------KSWRVRYMVANQLYE  267 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~~~d-----------~~~~vR~~a~~~l~~  267 (587)
                      ++-..+++.+.+..|-..++..+..+++.-++     ....+.++..+.++...           .+|..+...++.|+-
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri  260 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI  260 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence            88888999999998888888888887776443     11233344444444321           366777777776665


Q ss_pred             HHHHhCCCCcccchHHHHHHhcC--CChH----HHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHH
Q 007863          268 LCEAVGPEPTRSDVVPAYVRLLR--DNEA----EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALAT  341 (587)
Q Consensus       268 l~~~~~~~~~~~~l~~~l~~~l~--d~~~----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~  341 (587)
                      +++.  .....+.+-.++-+...  |.+.    .|-..++.++..+-   .........+..+-+++.+++-.+|..++.
T Consensus       261 LGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~---~~~~LrvlainiLgkFL~n~d~NirYvaLn  335 (866)
T KOG1062|consen  261 LGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR---SNSGLRVLAINILGKFLLNRDNNIRYVALN  335 (866)
T ss_pred             hcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc---CCchHHHHHHHHHHHHhcCCccceeeeehh
Confidence            5432  11111222333333332  2222    22333333333321   122222334555666666667777777777


Q ss_pred             HHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHH
Q 007863          342 VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (587)
Q Consensus       342 ~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l  421 (587)
                      .|..+...-+  ...+.=-..+..+++|+++.+|..|+.-.-.+...-..    ..++..+...+...+...|..+..-+
T Consensus       336 ~L~r~V~~d~--~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv----~~mv~eLl~fL~~~d~~~k~~~as~I  409 (866)
T KOG1062|consen  336 MLLRVVQQDP--TAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNV----RVMVKELLEFLESSDEDFKADIASKI  409 (866)
T ss_pred             hHHhhhcCCc--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccH----HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            7766654322  22344456788999999999999999888877654322    34566666666667888888888888


Q ss_pred             HHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-Chhh--hhhchHHHHHhh--hcCCccHHHHHHH
Q 007863          422 PLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-GPDW--AMQHIVPQVLEM--INNPHYLYRMTIL  496 (587)
Q Consensus       422 ~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~--~~~~~~~~l~~~--l~~~~~~~r~~a~  496 (587)
                      ..+++.+.++  ....+..+++.+...-.-|+..+...+-.++..- +...  ....+...+...  +.-.+...-+.+.
T Consensus       410 ~~laEkfaP~--k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~  487 (866)
T KOG1062|consen  410 AELAEKFAPD--KRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVAS  487 (866)
T ss_pred             HHHHHhcCCc--chhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence            8888887664  3344555555555544456666666665555432 2211  011111111111  1112344678899


Q ss_pred             HHHHHhhcccCh--------HHHHHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCC
Q 007863          497 QAISLLAPVMGS--------EITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPD  566 (587)
Q Consensus       497 ~~l~~l~~~~~~--------~~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~  566 (587)
                      |+||..+..+-.        ....+.++..+.+.+..  .+..+|..++-++..+...+...  .+.+-..+..+...-+
T Consensus       488 W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~  565 (866)
T KOG1062|consen  488 WCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLD  565 (866)
T ss_pred             HHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhccccc
Confidence            999998852211        11234555555555443  34788999999999998776543  3456666666666777


Q ss_pred             ccHHHHHHH
Q 007863          567 VDVRFFATQ  575 (587)
Q Consensus       567 ~~Vr~~a~~  575 (587)
                      -+.+++|.+
T Consensus       566 ~elQQRa~E  574 (866)
T KOG1062|consen  566 TELQQRAVE  574 (866)
T ss_pred             HHHHHHHHH
Confidence            777777765

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.36  E-value=6.2e-08  Score=101.54  Aligned_cols=490  Identities=15%  Similarity=0.132  Sum_probs=279.0

Q ss_pred             HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863           90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR  169 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~  169 (587)
                      .|...+..+...+|-.|++++..+.+.-+.--..+.+..-+..-..|....+|.+|..++|...-.- ++....+...+.
T Consensus       820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~-~e~~~qyY~~i~  898 (1692)
T KOG1020|consen  820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSI-PELIFQYYDQII  898 (1692)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhcc-HHHHHHHHHHHH
Confidence            3444556788999999999999998864332223334444444455667889999999998764333 456667777788


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh-hhhhc-------
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-DCVAH-------  241 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~-------  241 (587)
                      ....|+...||+.+++.+..++...+.-.....+..-+..-.+|+...|.+.+.+.+-.++=.-.++ ...+.       
T Consensus       899 erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~  978 (1692)
T KOG1020|consen  899 ERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISL  978 (1692)
T ss_pred             hhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHH
Confidence            8889999999999999999999877653333444444444567877779999999888875321111 11111       


Q ss_pred             hHHHHH---HhcCCCchHHHHHHHHHHHH--HHHHhCC--CCcccchHHHHHHhc------------CCChHHHHH-HHH
Q 007863          242 ILPVIV---NFSQDKSWRVRYMVANQLYE--LCEAVGP--EPTRSDVVPAYVRLL------------RDNEAEVRI-AAA  301 (587)
Q Consensus       242 l~~~l~---~~~~d~~~~vR~~a~~~l~~--l~~~~~~--~~~~~~l~~~l~~~l------------~d~~~~vr~-~a~  301 (587)
                      ....+.   .+..+..+..=...+..-..  ......+  .......+.++...+            .+.+.++|. +++
T Consensus       979 ~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~l 1058 (1692)
T KOG1020|consen  979 EVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYL 1058 (1692)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHH
Confidence            111111   11112111111111000000  0000000  000112233333222            122334444 445


Q ss_pred             HhHHHHHHhhCHH---HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHH
Q 007863          302 GKVTKICRILNPE---LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVR  375 (587)
Q Consensus       302 ~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr  375 (587)
                      ..|..+++..+.-   .+...+.|++..-++. ....+-...+..+..+...+.  .+.+...+-..+.+.+-...-.+.
T Consensus      1059 stL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V 1138 (1692)
T KOG1020|consen 1059 STLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATV 1138 (1692)
T ss_pred             HHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHH
Confidence            5566666543221   3334456666543221 223444555555555444332  344555555666666655556666


Q ss_pred             HHHHHHhHHhhhhhchh-hHhhhhHHHHHHHh-------cCC----CcHHHHHHHHHHHHHHHhhC--------h-----
Q 007863          376 LNIISKLDQVNQVIGID-LLSQSLLPAIVELA-------EDR----HWRVRLAIIEYIPLLASQLG--------V-----  430 (587)
Q Consensus       376 ~~a~~~l~~i~~~~~~~-~~~~~~~~~l~~~~-------~~~----~~~vr~~~~~~l~~l~~~~~--------~-----  430 (587)
                      ..+..+++.+....... .....+...+...+       .+.    +...-...+-.+|.+++.+.        .     
T Consensus      1139 ~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~ 1218 (1692)
T KOG1020|consen 1139 VEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQE 1218 (1692)
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhh
Confidence            77778888877653222 11122222222221       111    11222334556777777541        1     


Q ss_pred             -hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCcc-HH-HHHHHHHHHHhhcc--
Q 007863          431 -GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY-LY-RMTILQAISLLAPV--  505 (587)
Q Consensus       431 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-~~-r~~a~~~l~~l~~~--  505 (587)
                       +...+.++..+.-+.++.+..+|..|+.++|.++-.-..-++...+...+.+.+.+.+. .. +..++..+..+...  
T Consensus      1219 ~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ki~~l~n~~~yL~eee 1298 (1692)
T KOG1020|consen 1219 GETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKSKIQLLQNLELYLLEEE 1298 (1692)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence             13346677777778889999999999999999987544444445555555555555432 22 44444433333210  


Q ss_pred             ----------------------------cChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHh
Q 007863          506 ----------------------------MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS  553 (587)
Q Consensus       506 ----------------------------~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  553 (587)
                                                  .+..    -.....++.++..+-|.+..+|..|++.+.-+...-=-.+  ..
T Consensus      1299 ~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikvl~liL~QGLVhP--~~ 1376 (1692)
T KOG1020|consen 1299 KKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKVLKLILNQGLVHP--VH 1376 (1692)
T ss_pred             HHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccCCCc--cc
Confidence                                        0100    1456677888888889999999999999988865421112  26


Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          554 IRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       554 i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .+|.|..+.+|+.+..|..|-.-+..+.+
T Consensus      1377 cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~ 1405 (1692)
T KOG1020|consen 1377 CVPTLIALETDPSQAIRHVADELLKEIDE 1405 (1692)
T ss_pred             hhhhheeecCChHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999988887755

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.35  E-value=6.4e-07  Score=92.36  Aligned_cols=344  Identities=13%  Similarity=0.129  Sum_probs=223.2

Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC-----------CCcccchHHHHHHhcCCC------hHHHHHHHH
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-----------EPTRSDVVPAYVRLLRDN------EAEVRIAAA  301 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~l~d~------~~~vr~~a~  301 (587)
                      ...+.|.+...+.... ..|...+..|..++..-.+           ......++|.+.+.-...      ....|...+
T Consensus       516 F~~la~~l~~al~~~~-elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L  594 (1176)
T KOG1248|consen  516 FTDLAPILGAALLKRP-ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVL  594 (1176)
T ss_pred             HHHHHHHHHHHHhcch-HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHH
Confidence            3445666655555443 8888888888887764210           011235777777665432      234444444


Q ss_pred             HhHH-HHHHhhCHHHHHHhHHHHHhHhcCCCcHHH----HHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHH
Q 007863          302 GKVT-KICRILNPELAIQHILPCVKELSSDSSQHV----RSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRL  376 (587)
Q Consensus       302 ~~l~-~l~~~~~~~~~~~~~~~~l~~~~~d~~~~v----r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  376 (587)
                      ..+. ......+. .....+...+.....+.+..+    +.+.+..+..++.+.....+. .+..+.-...+..+..+|.
T Consensus       595 ~~i~~~~~~~t~~-dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs-~l~~v~~~~e~~~~~~vQk  672 (1176)
T KOG1248|consen  595 EIIRVDYFTVTPT-DVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVS-KLFTVDPEFENSSSTKVQK  672 (1176)
T ss_pred             HHHHHHHhhcccH-HHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHH-HHHHhhHHhhccccHHHHH
Confidence            4444 23332222 233445555556666654433    344444455555444433332 2234444455566889999


Q ss_pred             HHHHHhHHhhhhhchh----hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCch
Q 007863          377 NIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVY  450 (587)
Q Consensus       377 ~a~~~l~~i~~~~~~~----~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~  450 (587)
                      .+...|..++..-..+    .....+...+.+-+++.....|...+.++..+.+..+.+.  +....+|-++-.+++.+.
T Consensus       673 K~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~  752 (1176)
T KOG1248|consen  673 KAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNV  752 (1176)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccH
Confidence            9999999988762222    2234455555555666777889999999999998887443  234444544445588899


Q ss_pred             HHHHHHHHHHHHHH--H---HhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---cChHHHHHhHHHHH
Q 007863          451 SIRDAAANNVKRLA--E---EFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSEITCSQLLPVV  519 (587)
Q Consensus       451 ~vr~~a~~~l~~l~--~---~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~~l~~l  519 (587)
                      .-|..|..+|-.++  .   ..|.+.   ..+.+++.+...+......++...+-++..+...   ...+.+.+.++..+
T Consensus       753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V  832 (1176)
T KOG1248|consen  753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV  832 (1176)
T ss_pred             HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            99999999988887  2   234332   3355666665554444445555546666666543   33455788999999


Q ss_pred             HhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          520 INASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      ..++...++.+|..|+..+..++..++..   .+.+.++|.+..+..|....+|..+...+..+...+|
T Consensus       833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg  901 (1176)
T KOG1248|consen  833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFG  901 (1176)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999988875   5566789999999999999999999999999988776

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.35  E-value=3.5e-11  Score=116.38  Aligned_cols=255  Identities=17%  Similarity=0.206  Sum_probs=206.1

Q ss_pred             CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC
Q 007863          329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  408 (587)
Q Consensus       329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~  408 (587)
                      .-.+..-|......+......++.+.....++|.+...+.-.+  --...+.-+-.+...+...++...++|.+.+++..
T Consensus       264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~  341 (690)
T KOG1243|consen  264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS  341 (690)
T ss_pred             ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence            3345556666666666666666666667777777776654333  11112222333344444455677899999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCc
Q 007863          409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPH  488 (587)
Q Consensus       409 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~  488 (587)
                      ++..+|...++.+..+...+..+.+.+.+.|.+...+.|.++.+|+.++.++..++..++.+.....++..+.....|.+
T Consensus       342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~  421 (690)
T KOG1243|consen  342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH  421 (690)
T ss_pred             cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999988666788888888878889


Q ss_pred             cHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCcc
Q 007863          489 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD  568 (587)
Q Consensus       489 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~  568 (587)
                      ..+|....-|++.++..+........+...+.+.+.|+.+.-|.+++.++....+.++.......++|.+.-+.-|++..
T Consensus       422 ~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~  501 (690)
T KOG1243|consen  422 GGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKT  501 (690)
T ss_pred             CcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccc
Confidence            99999999999999988765542233344566679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 007863          569 VRFFATQALQSKDQVMM  585 (587)
Q Consensus       569 Vr~~a~~al~~l~~~~~  585 (587)
                      ||..|.+++...-+.+.
T Consensus       502 vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  502 VRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             hhhHHHHHHHHHHhhhh
Confidence            99999999988776654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.35  E-value=9.2e-10  Score=105.42  Aligned_cols=248  Identities=24%  Similarity=0.310  Sum_probs=151.0

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhch
Q 007863          163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHI  242 (587)
Q Consensus       163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  242 (587)
                      ...+.+...+.++++.+|..+...++.+..        ...+|.+..++.|.++.+|..++.+++.+..        +..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            455666777888889999999988776543        3467788888999999999999998876643        344


Q ss_pred             HHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh------------HHHHHHHHHhHHHHHH
Q 007863          243 LPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE------------AEVRIAAAGKVTKICR  309 (587)
Q Consensus       243 ~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~l~~  309 (587)
                      .+.+..+++ |.++.||..++..|+.+...        ..+..+...++|..            +.+|..+...++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            555555555 79999999999998876532        23455555555544            3456666666665543


Q ss_pred             hhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh
Q 007863          310 ILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  389 (587)
Q Consensus       310 ~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~  389 (587)
                              +...+.+...+.|....||..++.+++.+....      ..+.+.+...+.|.+..+|..++..++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    334455555666666666666666666665321      2344556666666666666666666665542  


Q ss_pred             chhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863          390 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  464 (587)
Q Consensus       390 ~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                            +...+.+...+.+.+|.++.......+.    .+    ...-...+...+.|..+.+|..+...++.+.
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGA----LD----LAEAALPLLLLLIDEANAVRLEAALALGQIG  303 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhcc----cC----chhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence                  2344444455555555555444433330    00    1112333444455566666666666655544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.34  E-value=1e-10  Score=105.09  Aligned_cols=187  Identities=18%  Similarity=0.244  Sum_probs=135.0

Q ss_pred             hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----hhhHHHH---HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh
Q 007863          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDK---LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  469 (587)
Q Consensus       397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  469 (587)
                      .+.+.+.....+.+|..|..++..+..+.....    .+.+.+.   +.+.+...+.|....|-..|+.+++.++..+|.
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~   86 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS   86 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            344444444567899999999999988877551    1222222   335666778888889999999999999999988


Q ss_pred             hh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhH-HHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863          470 DW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQL-LPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       470 ~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  546 (587)
                      .+  +.+.++|.+++.+.+++..+|..|..++..+...++.   ...+ .+.+....++.++.+|..++..+..+....+
T Consensus        87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~---~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSY---SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            74  4588999999999999999999999999999998771   2344 7788888999999999999999999998887


Q ss_pred             --hH-----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          547 --QS-----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       547 --~~-----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                        ..     .....+.+.+.++++|++++||..|.+++..+.+..|.
T Consensus       164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence              11     23367899999999999999999999999999988764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.34  E-value=5.1e-10  Score=107.19  Aligned_cols=278  Identities=23%  Similarity=0.261  Sum_probs=195.9

Q ss_pred             chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  320 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  320 (587)
                      ...+.+.+.+.++++.+|..++..++.+.        ....+|.+..++.|.++.||..++.+|+.+..        +..
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~--------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELG--------SEEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhc--------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            45666677777888888888888866654        24578888888888888888888887777743        334


Q ss_pred             HHHHhHhcC-CCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC------------hHHHHHHHHHhHHhhh
Q 007863          321 LPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ  387 (587)
Q Consensus       321 ~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~a~~~l~~i~~  387 (587)
                      .+.+.+++. |.++.||..+..+++.+...-        .++.+...+.|..            ..+|..+...++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDER--------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCchh--------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            455555555 788888888888888876321        1233444444433            2578888888877653


Q ss_pred             hhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863          388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  467 (587)
Q Consensus       388 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                              +...+.+...+.+....+|..+...++.+....      ..+.+.+...+.|.++.||..++..++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    356777788888888899999998888776532      3567788888999999999999998887542  


Q ss_pred             ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch
Q 007863          468 GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       468 ~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                            ....+.+...+.+.++.++..+..+.....        .....+.+...+.|....+|..+..+++.+...   
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~---  305 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGALD--------LAEAALPLLLLLIDEANAVRLEAALALGQIGQE---  305 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhcccC--------chhhHHHHHHHhhcchhhHHHHHHHHHHhhccc---
Confidence                  345666667777788877777776665221        123444566667888899999999999888654   


Q ss_pred             HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863          548 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       548 ~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l  580 (587)
                           .....+.....+.+..+|..+...+..+
T Consensus       306 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~  333 (335)
T COG1413         306 -----KAVAALLLALEDGDADVRKAALILLEGI  333 (335)
T ss_pred             -----chHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence                 2334445556777778887777766543

>TIGR02270 conserved hypothetical protein

Probab=99.32  E-value=5.7e-10  Score=106.41  Aligned_cols=207  Identities=14%  Similarity=0.056  Sum_probs=93.6

Q ss_pred             HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHH
Q 007863          321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~  400 (587)
                      +..+...+.|.+..||.+++++|+.+.        .+...+.+..++++.++.||..++.+++...         ..-.+
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~---------~~~~~  150 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR---------HDPGP  150 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc---------cChHH
Confidence            344444455555555555555555443        1223344445555555555555554444321         11223


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHH
Q 007863          401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV  480 (587)
Q Consensus       401 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  480 (587)
                      .+..+++|+++.||..++..++.+...        ...|.+...+.|.++.||..|+..++.+.    .    ....+.+
T Consensus       151 ~L~~~L~d~d~~Vra~A~raLG~l~~~--------~a~~~L~~al~d~~~~VR~aA~~al~~lG----~----~~A~~~l  214 (410)
T TIGR02270       151 ALEAALTHEDALVRAAALRALGELPRR--------LSESTLRLYLRDSDPEVRFAALEAGLLAG----S----RLAWGVC  214 (410)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhccc--------cchHHHHHHHcCCCHHHHHHHHHHHHHcC----C----HhHHHHH
Confidence            334444555555555555555544421        12333344455556666666555554432    1    1122333


Q ss_pred             HhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH
Q 007863          481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE  560 (587)
Q Consensus       481 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  560 (587)
                      .....++....+..+...+...    +.    +..++.+..+++|+.  +|..++.+++.+...        ..++.|.+
T Consensus       215 ~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------~av~~L~~  276 (410)
T TIGR02270       215 RRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGDV--------EAAPWCLE  276 (410)
T ss_pred             HHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc--------chHHHHHH
Confidence            3333333333333333333222    11    244445555555533  555666665555332        34445555


Q ss_pred             hcCCCCccHHHHHHHHHHHH
Q 007863          561 LSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       561 l~~d~~~~Vr~~a~~al~~l  580 (587)
                      .+.|+.  ++..|.+++..|
T Consensus       277 ~l~d~~--~aR~A~eA~~~I  294 (410)
T TIGR02270       277 AMREPP--WARLAGEAFSLI  294 (410)
T ss_pred             HhcCcH--HHHHHHHHHHHh
Confidence            444433  555555555544

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=7.8e-07  Score=86.61  Aligned_cols=401  Identities=14%  Similarity=0.132  Sum_probs=235.3

Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc
Q 007863          154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL  233 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      ...++.....+-+-+..++++.-|.+|+.|+-.+-.+....+  +....-+|-+.+-+.|+++.|..+|+..+-.++..-
T Consensus       135 ~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP--eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKn  212 (877)
T KOG1059|consen  135 CIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP--EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN  212 (877)
T ss_pred             cccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh--HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence            334455666777777888899999999999999888776553  344456777888899999999999999999999887


Q ss_pred             ChhhhhhchHHHHHHhcC--CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHHh
Q 007863          234 EPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICRI  310 (587)
Q Consensus       234 ~~~~~~~~l~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~  310 (587)
                      |+.  .-.+-|.+.+++.  +.||.. ...++.++.+... .+. ....+++.+..+++... ..+-..|++++....-.
T Consensus       213 Pkn--yL~LAP~ffkllttSsNNWmL-IKiiKLF~aLtpl-EPR-LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s  287 (877)
T KOG1059|consen  213 PQN--YLQLAPLFYKLLVTSSNNWVL-IKLLKLFAALTPL-EPR-LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMS  287 (877)
T ss_pred             Ccc--cccccHHHHHHHhccCCCeeh-HHHHHHHhhcccc-Cch-hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence            653  2335666666554  446643 4445666655432 111 13468888888877654 33445555554433222


Q ss_pred             hC--H-HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          311 LN--P-ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       311 ~~--~-~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                      .|  . .....--+.-+..++.|.++..|.-.+-+++.+++.-+.  ..+.-...+.++|.|.++.+|..|+.-+..+..
T Consensus       288 ~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  288 SGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             cCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            22  1 122233455667788999999999999999999865432  234445788999999999999999988887765


Q ss_pred             hhchhhHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCC-----------------
Q 007863          388 VIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKD-----------------  447 (587)
Q Consensus       388 ~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d-----------------  447 (587)
                      .   +.+ ..++..+...+. .+....|...+..+-.++..-.-..+  .+.++.++..+.+=                 
T Consensus       366 k---kNl-~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~  441 (877)
T KOG1059|consen  366 K---KNL-MEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVA  441 (877)
T ss_pred             h---hhH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHh
Confidence            4   222 123333332222 22235555555444444432221111  12333333333221                 


Q ss_pred             -CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh--hh-cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc
Q 007863          448 -KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE--MI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS  523 (587)
Q Consensus       448 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  523 (587)
                       ..+.+|..++..+..+...            .+..  .. +..-..+-.+|+|++|.+++.+...   ..++..+++--
T Consensus       442 iRV~~iR~fsV~~m~~Ll~~------------~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr  506 (877)
T KOG1059|consen  442 IRVPSIRPFSVSQMSALLDD------------PLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPR  506 (877)
T ss_pred             eechhhhHhHHHHHHHHHhc------------hhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCc
Confidence             2233333333333332210            0000  01 1112456778999999998866443   33444444433


Q ss_pred             CCC-CccHHHHHHHHHH----HHHhhhchH-------HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          524 KDR-VPNIKFNVAKVLQ----SLIPIVDQS-------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       524 ~d~-~~~vR~~a~~~l~----~l~~~~~~~-------~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .+- ...+....+..+.    .++....+.       ...+.++..|.++....+-+|+.+|..++.-+..
T Consensus       507 ~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li~~  577 (877)
T KOG1059|consen  507 SDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELIRL  577 (877)
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHHHH
Confidence            322 2344444444443    344333221       3335566667777888899999998888876654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=5.2e-09  Score=100.21  Aligned_cols=278  Identities=15%  Similarity=0.159  Sum_probs=183.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcC
Q 007863          251 QDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS  329 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~  329 (587)
                      ++.+...|..+......++..-.. ......+..-+..+.+|.+..||.+|++++-.+++.+.-   .........+.+.
T Consensus       168 ~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~ls  244 (823)
T KOG2259|consen  168 SISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLS  244 (823)
T ss_pred             hcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhc
Confidence            344445555555444443322111 111234555577888999999999999999999883322   2345566778889


Q ss_pred             CCcHHHHHHHHHHHHhhhhhhc--------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863          330 DSSQHVRSALATVIMGMAPILG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~  401 (587)
                      |.+..||.+|++.+..++...+        .....+..+.-+...++|.+..||..|++.++.+-..- .+    .+...
T Consensus       245 D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS-ee----~i~QT  319 (823)
T KOG2259|consen  245 DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS-EE----IIQQT  319 (823)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH-HH----HHHHH
Confidence            9999999999999888877652        11233455666778899999999999999999886441 12    22223


Q ss_pred             HHH-Hhc-CCCcHHHHHHHHHHHH---HHH--hhC----hhhHH---HHH-----HHHHHHHcCCCchHHHHHHHHHHHH
Q 007863          402 IVE-LAE-DRHWRVRLAIIEYIPL---LAS--QLG----VGFFD---DKL-----GALCMQWLKDKVYSIRDAAANNVKR  462 (587)
Q Consensus       402 l~~-~~~-~~~~~vr~~~~~~l~~---l~~--~~~----~~~~~---~~l-----~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                      +-+ ++. +..|+.....-+.+..   ++.  .++    .+...   ..+     -..+...+.|+..+||.+|+..++.
T Consensus       320 LdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~  399 (823)
T KOG2259|consen  320 LDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCS  399 (823)
T ss_pred             HHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHH
Confidence            322 222 2333332222222211   110  011    11000   011     2345667889999999999999999


Q ss_pred             HHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863          463 LAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       463 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l  541 (587)
                      ++.. .+. |....+..+.++++|....||.-|+.++..++..+.   +.+..++.++..+.|.++++|.+.-..|...
T Consensus       400 La~s-sP~-FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  400 LATS-SPG-FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHcC-CCC-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9853 222 567788899999999999999999999999987643   3578899999999999999999888877654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=6.6e-07  Score=87.07  Aligned_cols=503  Identities=14%  Similarity=0.099  Sum_probs=252.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhh--hccccccccCCchHH-HHHHHHHhcccccCcCCcchHhhh
Q 007863           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKE--LIPFLSENNDDDDEV-LLAMAEELGVFIPYVGGLEYANVL   87 (587)
Q Consensus        11 ~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~--l~p~l~~~~~~~~~v-~~~~~~~l~~~~~~~~~~~~~~~l   87 (587)
                      +....+.++++|-.....|+..+..+.. +|-...|..  .+.++....-.+..+ +.++...+...      ......+
T Consensus        38 l~e~r~E~k~~d~~~k~~a~~kl~yl~m-lg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~------tdvlmL~  110 (877)
T KOG1059|consen   38 LEEIRQELKSDDLNVKSNAVLKLTYLEM-LGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDD------TDVLMLT  110 (877)
T ss_pred             HHHHHHHhhchhhhhhHHHHHHHHHHHH-HcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCC------ccHHHHH
Confidence            3445556666666666666666655533 355444432  223333221111122 11222222211      1222233


Q ss_pred             hhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHH
Q 007863           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTI  167 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~  167 (587)
                      ...+..-+.+.+..--.-|+..|..+..   + ++-..+-+-+..+..+..+.+|..|+.++..++..- ++....-+|-
T Consensus       111 tn~~rkdl~S~n~ye~giAL~GLS~fvT---p-dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~Fpr  185 (877)
T KOG1059|consen  111 TNLLRKDLNSSNVYEVGLALSGLSCIVT---P-DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCFPR  185 (877)
T ss_pred             HHHHHHHhccCccchhhheecccccccC---c-hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhHHH
Confidence            3334443343333332334444444332   2 233445666666777777778888877665555544 2344456677


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccChhhhhhchHHHH
Q 007863          168 YRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVI  246 (587)
Q Consensus       168 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  246 (587)
                      +..-+.|++|.|..+|+..++.++...+. .+.+ +-|.|.+++.+ .+..+-.-.+..++.+...-|.  .-..++|.+
T Consensus       186 L~EkLeDpDp~V~SAAV~VICELArKnPk-nyL~-LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLiepl  261 (877)
T KOG1059|consen  186 LVEKLEDPDPSVVSAAVSVICELARKNPQ-NYLQ-LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPI  261 (877)
T ss_pred             HHHhccCCCchHHHHHHHHHHHHHhhCCc-cccc-ccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHH
Confidence            77788999999999999999999987665 2322 44555555443 2222333344444444332221  234567777


Q ss_pred             HHhcCCCchHHHHHHHHHHHHHHHH-hCCCC--c---ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863          247 VNFSQDKSWRVRYMVANQLYELCEA-VGPEP--T---RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  320 (587)
Q Consensus       247 ~~~~~d~~~~vR~~a~~~l~~l~~~-~~~~~--~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  320 (587)
                      ..++..+..  .....+|+..+... +..+.  .   ..-.+.-+..++.|.|++.+.-++.+++.+++.-...  ...-
T Consensus       262 t~li~sT~A--mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~--Vqa~  337 (877)
T KOG1059|consen  262 TELMESTVA--MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA--VQAH  337 (877)
T ss_pred             HHHHHhhHH--HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH--HHHh
Confidence            777665532  11122333333322 11111  0   1113455566788999999999999999998854332  2334


Q ss_pred             HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH--hhhh
Q 007863          321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--SQSL  398 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~--~~~~  398 (587)
                      -..+.+++.|.++.+|..|+..+..+..   ++...+.+-..+..+...+....|...+..+-.+|+.-....+  .+.+
T Consensus       338 kdlIlrcL~DkD~SIRlrALdLl~gmVs---kkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWY  414 (877)
T KOG1059|consen  338 KDLILRCLDDKDESIRLRALDLLYGMVS---KKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEWY  414 (877)
T ss_pred             HHHHHHHhccCCchhHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence            4567788999999999999998877762   3333322222233333333346677766666666644322111  1344


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC-----------chHHHHHHHHHHHHHHHHh
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK-----------VYSIRDAAANNVKRLAEEF  467 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-----------~~~vr~~a~~~l~~l~~~~  467 (587)
                      +..+.++..=+..+.-....+.+..++-.+.  ...+..+..+..++.|+           -.+|-.+|+-++|.+....
T Consensus       415 lsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~--~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~v  492 (877)
T KOG1059|consen  415 LSVLVELARLEGTRHGSLIAEQIIDVAIRVP--SIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFV  492 (877)
T ss_pred             HHHHHHHHhccccchhhHHHHHHHHHheech--hhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHh
Confidence            5555555432222111112222222211110  01111122222222222           4578888888888888765


Q ss_pred             ChhhhhhchHHHHHhhhcCC-ccHHHHHHH----HHHHHhhcccChHH-------HHHhHHHHHHhhcCCCCccHHHHHH
Q 007863          468 GPDWAMQHIVPQVLEMINNP-HYLYRMTIL----QAISLLAPVMGSEI-------TCSQLLPVVINASKDRVPNIKFNVA  535 (587)
Q Consensus       468 ~~~~~~~~~~~~l~~~l~~~-~~~~r~~a~----~~l~~l~~~~~~~~-------~~~~~l~~l~~~l~d~~~~vR~~a~  535 (587)
                      ...   ...+..+.+-..+- ...+....+    +.+...+....+..       ..+.++..+-.+....+-+|...|.
T Consensus       493 en~---~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~  569 (877)
T KOG1059|consen  493 ENP---NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERAS  569 (877)
T ss_pred             hCH---HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHH
Confidence            432   23344433322111 112333333    33333333222211       2355566666666777888888866


Q ss_pred             HHHHHH
Q 007863          536 KVLQSL  541 (587)
Q Consensus       536 ~~l~~l  541 (587)
                      .++..+
T Consensus       570 ~~~~li  575 (877)
T KOG1059|consen  570 EVLELI  575 (877)
T ss_pred             HHHHHH
Confidence            665544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=5.1e-06  Score=85.99  Aligned_cols=178  Identities=8%  Similarity=0.069  Sum_probs=131.8

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhChhhH----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHH
Q 007863          407 EDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQV  480 (587)
Q Consensus       407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l  480 (587)
                      +..+..++..+.+.+..++..-..+.+    ...+...+...+++.....|...+.+|..+.+..+.+.  +....+|.+
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev  743 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV  743 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344788999999999998876322222    34556666677788888999999999999999888553  345566666


Q ss_pred             HhhhcCCccHHHHHHHHHHHHhh--c---ccChHH---HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HH
Q 007863          481 LEMINNPHYLYRMTILQAISLLA--P---VMGSEI---TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SV  549 (587)
Q Consensus       481 ~~~l~~~~~~~r~~a~~~l~~l~--~---~~~~~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~  549 (587)
                      .-.+++-+...|+.+..+|..++  +   ..|.++   ..+.+++.+...+......++...+-++..+...+..   +.
T Consensus       744 IL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~  823 (1176)
T KOG1248|consen  744 ILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDE  823 (1176)
T ss_pred             HHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            55568888889999998888887  2   334333   5677777777777666777776666777777665443   56


Q ss_pred             HHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863          550 VEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       550 ~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                      +...++..+.-++....++|+..|+..+..+...+
T Consensus       824 ~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~  858 (1176)
T KOG1248|consen  824 TLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF  858 (1176)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC
Confidence            67788888888899999999999999999887654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.24  E-value=1.6e-09  Score=95.24  Aligned_cols=344  Identities=15%  Similarity=0.126  Sum_probs=229.1

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHhc-ccCchhHHHHHHHHHHHHhcccC
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS----EIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLE  234 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~----~i~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~  234 (587)
                      ...++-++...+.+ ++-+.+..+..-+.++.+.-..+++.+    -.+|-+.+++ +.+.......|.-+|..+++.-.
T Consensus        69 ~~~elp~lt~~l~S-dDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt  147 (526)
T COG5064          69 FYSELPQLTQQLFS-DDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTT  147 (526)
T ss_pred             hhhhhHHHHHHHhh-hHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcc
Confidence            34445444444444 445555555555555554433333332    2466777777 44445567788888888877654


Q ss_pred             hh---hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CC-cccchHHHHHHhcCCCh--HHHHHHHHHhHHH
Q 007863          235 PQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EP-TRSDVVPAYVRLLRDNE--AEVRIAAAGKVTK  306 (587)
Q Consensus       235 ~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~  306 (587)
                      .+   -.....+|.+.+++.+++..||..+..+||+++-....  +. .....+..+..++.++-  ...-..+...|+.
T Consensus       148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN  227 (526)
T COG5064         148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN  227 (526)
T ss_pred             cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence            42   12345789999999999999999999999998743211  00 01123444455554443  3556678889999


Q ss_pred             HHHhhCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863          307 ICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIIS  380 (587)
Q Consensus       307 l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~  380 (587)
                      ++..-.+.   ......+|.+.+++...++.|-.-|+.+++-+.......   .....+.+-+..+|..++..++.-+++
T Consensus       228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR  307 (526)
T COG5064         228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR  307 (526)
T ss_pred             hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence            98855443   335678999999999999999999999998887543211   112235567889999999999999999


Q ss_pred             HhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHH
Q 007863          381 KLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRD  454 (587)
Q Consensus       381 ~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~  454 (587)
                      .++.+...-...   .+.-..++.+..++.++...+|+.++..++.+-..-.   ...+...+.|.++.++...+..+|+
T Consensus       308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kK  387 (526)
T COG5064         308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKK  387 (526)
T ss_pred             hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence            999887432211   1223567888888999988999999988876642111   1122346789999999999999999


Q ss_pred             HHHHHHHHHHHHhC--hhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863          455 AAANNVKRLAEEFG--PDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       455 ~a~~~l~~l~~~~~--~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~  504 (587)
                      .||-++........  ++.    ..+.++..+..++.-.+..+-+.++.++.++.+
T Consensus       388 EACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         388 EACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             HHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            99999988765321  121    235566677777665555566777888888775

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.1e-08  Score=100.51  Aligned_cols=176  Identities=15%  Similarity=0.128  Sum_probs=114.0

Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  397 (587)
                      .+++.-+.....+-+...-+.++++++.++......   ..+++.+..+++-....|.+.+...+..+........  +.
T Consensus       349 ~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~--~~  423 (734)
T KOG1061|consen  349 AQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY--ES  423 (734)
T ss_pred             HHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch--hh
Confidence            446666777777777777777888888887654433   5677778888776666666667777776666554331  44


Q ss_pred             hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863          398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  476 (587)
Q Consensus       398 ~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  476 (587)
                      +++.+...+.. .+++.|.+.+..++.-+..++.   ..+++..++..+.|+...|+..-..+.-++.-..+.+  .+.+
T Consensus       424 vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~---a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~--tq~~  498 (734)
T KOG1061|consen  424 VVAILCENLDSLQEPEAKAALIWILGEYAERIEN---ALELLESFLENFKDETAEVQLELLTAAIKLFLKKPTE--TQEL  498 (734)
T ss_pred             hhhhhcccccccCChHHHHHHHHHHhhhhhccCc---HHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCcc--HHHH
Confidence            55655554443 5678888888888888887765   4667888888888888888776665554444333322  2344


Q ss_pred             HHHHHhh-hcC-CccHHHHHHHHHHHHhh
Q 007863          477 VPQVLEM-INN-PHYLYRMTILQAISLLA  503 (587)
Q Consensus       477 ~~~l~~~-l~~-~~~~~r~~a~~~l~~l~  503 (587)
                      +..+... ..| .+..+|..++..-.-+.
T Consensus       499 l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs  527 (734)
T KOG1061|consen  499 LQGVLPLATADTDNPDLRDRGLIYWRLLS  527 (734)
T ss_pred             HHHHHhhhhccccChhhhhhHHHHHHHhh
Confidence            4444443 333 34577877776655554

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=4.6e-09  Score=100.55  Aligned_cols=249  Identities=19%  Similarity=0.143  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----  235 (587)
                      ..+.+...+..+..+.++.||..|++.|-.+.+.+   .....+.....+.+.|++..||.+|++.+..+++..+-    
T Consensus       195 d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~---kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  195 DREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF---KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             cHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc---cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            55667776888999999999999999999988733   44456677778899999999999999999888887732    


Q ss_pred             ----hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccch-HHHHHH-hcC-CChHHHHHHHHHhHHHHH
Q 007863          236 ----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV-VPAYVR-LLR-DNEAEVRIAAAGKVTKIC  308 (587)
Q Consensus       236 ----~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l-~~~l~~-~l~-d~~~~vr~~a~~~l~~l~  308 (587)
                          ....+..+..+.....|.+|.||..|++.||.+-...      .++ ...+-+ ++. +.-|......-+.+..=+
T Consensus       272 e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vS------ee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~G  345 (823)
T KOG2259|consen  272 ESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVS------EEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSG  345 (823)
T ss_pred             hhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhH------HHHHHHHHHHHHhhhhhhhhhcccchHHHHhcC
Confidence                1234456777788889999999999999999876531      111 122211 111 111111111111111111


Q ss_pred             -HhhCH--------HHH--------HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC
Q 007863          309 -RILNP--------ELA--------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF  371 (587)
Q Consensus       309 -~~~~~--------~~~--------~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  371 (587)
                       ..-|+        +..        ....-..+...+.|.-..||.+|..+++.++..-  ..+....+.++..+++|+.
T Consensus       346 ewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~  423 (823)
T KOG2259|consen  346 EWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEI  423 (823)
T ss_pred             CcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHH
Confidence             00011        110        0112233556677888899999999999997542  2345566788999999999


Q ss_pred             hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 007863          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (587)
Q Consensus       372 ~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  422 (587)
                      ..||..++.+|..|+..+..   .+..++.+...+.|.+.++|.++-+.+.
T Consensus       424 ~~VRL~ai~aL~~Is~~l~i---~eeql~~il~~L~D~s~dvRe~l~elL~  471 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVHLAI---REEQLRQILESLEDRSVDVREALRELLK  471 (823)
T ss_pred             HHHHHHHHHHHHHHHHHhee---cHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999987543   3578899999999999999998877664

>TIGR02270 conserved hypothetical protein

Probab=99.21  E-value=4.3e-09  Score=100.47  Aligned_cols=241  Identities=15%  Similarity=0.071  Sum_probs=172.9

Q ss_pred             HHHHHHHhc-ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccch
Q 007863          203 IMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDV  281 (587)
Q Consensus       203 i~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l  281 (587)
                      .++.+...+ .+++..++..++..+....        ....+..+...+.|.+..||..+++.|+.+.        ....
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a  118 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQA  118 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHH
Confidence            344455555 5667888877666654321        1224778888889999999999999998653        4467


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHH
Q 007863          282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP  361 (587)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  361 (587)
                      .+.+..++++.++.||..++.+++....    +     -.+.+..+++|+++.||..++.+++.+..        ....|
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r~~----~-----~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~  181 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAHRH----D-----PGPALEAALTHEDALVRAAALRALGELPR--------RLSES  181 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhcc----C-----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence            7889999999999999999877776322    1     23566777789999999999999998862        23456


Q ss_pred             HHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHH
Q 007863          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC  441 (587)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l  441 (587)
                      .+...+.|.++.||..++.++..+..        +...+.+..+..++.+..+..+...+...    +.    +..++.+
T Consensus       182 ~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L  245 (410)
T TIGR02270       182 TLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL  245 (410)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence            67788999999999999999977653        23344555545555555555444443322    22    3567778


Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863          442 MQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~  504 (587)
                      ..+++|+.  +|..++.++|.+..        ...++.+...+.|+.  +|..|-.++..|.-
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            88888865  99999999997642        557888888887665  88889999988864

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.21  E-value=3e-06  Score=89.47  Aligned_cols=487  Identities=14%  Similarity=0.152  Sum_probs=235.8

Q ss_pred             Cccc-HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchH
Q 007863            7 PLYP-IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYA   84 (587)
Q Consensus         7 ~~~~-~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~   84 (587)
                      ++++ +..++..+..+-..+|-.|+++|+.+..+-..-...+.....+.. ..|.+..||.++.+.+|++.-...  +..
T Consensus       813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~  890 (1692)
T KOG1020|consen  813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELI  890 (1692)
T ss_pred             hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHH
Confidence            4455 344557777888899999999999986543332333444444444 557788999999999998865432  222


Q ss_pred             hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc-CCCH-----
Q 007863           85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP-SAPE-----  158 (587)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~-~~~~-----  158 (587)
                      ...-.-+..-..|+...||+.+++.+..+|...+.-.....+..-+..-.+|+...+...+...+..++- -.+.     
T Consensus       891 ~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~  970 (1692)
T KOG1020|consen  891 FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQP  970 (1692)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccH
Confidence            3333334444568999999999999999999876422222222222222344433344444444433321 1111     


Q ss_pred             HHHHHHH---HHHH---HhcCCCCHHHHHHHHHHHHHHHHHHh----hhhh-------HHHHHHHH--------HH----
Q 007863          159 ALKTELR---TIYR---QLCQDDMPMVRRSAATNLGKFAATVE----AAHL-------KSEIMSIF--------EE----  209 (587)
Q Consensus       159 ~~~~~l~---~~l~---~l~~~~~~~vR~~a~~~l~~l~~~~~----~~~~-------~~~i~~~l--------~~----  209 (587)
                      .....+.   ..+.   .+..+..+.       .+..+.+...    ...+       ....+.++        .+    
T Consensus       971 ~~~~kI~~~~~vv~~~~d~~~~~~eq-------Ll~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~ 1043 (1692)
T KOG1020|consen  971 AKARKISLEVDVVMSQVDLMNDWLEQ-------LLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESD 1043 (1692)
T ss_pred             HHHHhhHHHHHHHHHHHHHhcChHHH-------HHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhH
Confidence            0101000   0000   111111111       0111111000    0000       00011111        11    


Q ss_pred             hcccCchhHHHHHH-HHHHHHhcccCh---hhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCC--CCcccchH
Q 007863          210 LTQDDQDSVRLLAV-EGCGALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP--EPTRSDVV  282 (587)
Q Consensus       210 l~~d~~~~vr~~a~-~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~  282 (587)
                      ...++...+|..+. ..|..++..-+.   ......+.|.+..-++. ....+-...+..|......+..  +.+...+-
T Consensus      1044 ~~~~~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLE 1123 (1692)
T KOG1020|consen 1044 DMNEEESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLE 1123 (1692)
T ss_pred             hhhcccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence            12233445665444 445555443332   12334456666554332 2334445555555554443321  11112233


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHh-------cCCC----c-HHHHHHHHHHHHhhhhh
Q 007863          283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKEL-------SSDS----S-QHVRSALATVIMGMAPI  349 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~-------~~d~----~-~~vr~~a~~~l~~l~~~  349 (587)
                      ..+.+++-..+...-..|+-+++.+....... .+....+..+.+.       .++.    + +..++ .+..+|-++.+
T Consensus      1124 e~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~R-siftlG~l~Ry 1202 (1692)
T KOG1020|consen 1124 EDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQR-SIFTLGLLSRY 1202 (1692)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHH-HHHHHHHHHHh
Confidence            33333333344455566777888887753222 1222222222222       1122    1 22222 23455666665


Q ss_pred             hc--------h------HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCc-HH-
Q 007863          350 LG--------K------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RV-  413 (587)
Q Consensus       350 ~~--------~------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~v-  413 (587)
                      +.        +      +...+.++..+.-+.++.+..+|..|+.+|+.++-.-..-...+.+...+...+.+.+. .. 
T Consensus      1203 fdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~~~ 1282 (1692)
T KOG1020|consen 1203 FDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDIKS 1282 (1692)
T ss_pred             ccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccHHH
Confidence            42        1      13445667777777888889999999999999986544333344555556555555432 22 


Q ss_pred             HHHHHHHHHHHHHhh------------------------------Chhh----HHHHHHHHHHHHcCCCchHHHHHHHHH
Q 007863          414 RLAIIEYIPLLASQL------------------------------GVGF----FDDKLGALCMQWLKDKVYSIRDAAANN  459 (587)
Q Consensus       414 r~~~~~~l~~l~~~~------------------------------~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +..+++.+..+...-                              +...    +.+.+++.++...-|.+..+|..|++.
T Consensus      1283 ki~~l~n~~~yL~eee~~l~~~~~~w~~~~k~edlkem~~v~sg~~s~~~~~~i~Qlfl~~ILe~cl~~d~~~r~~aikv 1362 (1692)
T KOG1020|consen 1283 KIQLLQNLELYLLEEEKKLRNKGKNWTKSNKSEDLKEMLDVSSGMGSSDGVSAIMQLFLDNILESCLDRDLQVRLVAIKV 1362 (1692)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhcccccccccccchHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            334444433322110                              0110    112334444444445566666666666


Q ss_pred             HHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863          460 VKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       460 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  505 (587)
                      +.-+.. .|-- .-...+|++..+-+|+....|..|-..+..+-+.
T Consensus      1363 l~liL~-QGLV-hP~~cvPtLIAL~Tdp~~~~r~~Ad~LL~eid~k 1406 (1692)
T KOG1020|consen 1363 LKLILN-QGLV-HPVHCVPTLIALETDPSQAIRHVADELLKEIDEK 1406 (1692)
T ss_pred             HHHHHH-ccCC-CccchhhhheeecCChHHHHHHHHHHHHHHHHHh
Confidence            555443 1211 1134556666666666666666666666555543

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=2.1e-07  Score=91.47  Aligned_cols=489  Identities=14%  Similarity=0.101  Sum_probs=273.9

Q ss_pred             HHHHHHHHHhccccc--CcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCC
Q 007863           62 EVLLAMAEELGVFIP--YVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWF  139 (587)
Q Consensus        62 ~v~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~  139 (587)
                      ..+..+.+.+.-+..  .+|. ..+..++-.+.++.++.|+..|+..--+++.+.....+-  . .+..-+..-.+....
T Consensus        39 ~c~~~lskllyll~qge~~~~-~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedv--i-ivtsslmkD~t~~~d  114 (865)
T KOG1078|consen   39 KCRHILSKLLYLLNQGEHFGE-TEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDV--I-IVTSSLMKDMTGKED  114 (865)
T ss_pred             HHHHHHHHHHHHHhcccccch-hhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhh--h-hhhHHHHhhccCCCc
Confidence            344455555443322  2332 234566667888889999999998877777766543211  0 111122211223345


Q ss_pred             cchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHH
Q 007863          140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVR  219 (587)
Q Consensus       140 ~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr  219 (587)
                      ..|..|+..+..+..   ......+-..+.+..-|.++.++.++.-.=-.+...  .+..........+....+.+..++
T Consensus       115 ~yr~~AiR~L~~I~d---~~m~~~iery~kqaivd~~~avSsaalvss~hll~~--~~~~vkrw~neiqea~~s~~~m~Q  189 (865)
T KOG1078|consen  115 LYRAAAIRALCSIID---GTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPI--SFDVVKRWANEVQEAVNSDNIMVQ  189 (865)
T ss_pred             chhHHHHHHHHhhcC---cchhHHHHHHHHhHeeccccccchHHHHHHhhhhcc--cHHHHHHHHHhhhhccCcHHHHHH
Confidence            566666665544433   334455556667777888887776554322222221  122223333334444555555566


Q ss_pred             HHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcCCChHHHHH
Q 007863          220 LLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRI  298 (587)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~  298 (587)
                      -.|...+-.+-+.-.-  ....++..+.+ -.-.++..+..-.+.-   +..+.. ......+.+.+-+.+......|-.
T Consensus       190 yHalglLyqirk~drl--a~sklv~~~~~-~~~~~~~A~~~lir~~---~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~  263 (865)
T KOG1078|consen  190 YHALGLLYQIRKNDRL--AVSKLVQKFTR-GSLKSPLAVCMLIRIA---SELLKENQQADSPLFPFLESCLRHKSEMVIY  263 (865)
T ss_pred             HHHHHHHHHHHhhhHH--HHHHHHHHHcc-ccccchhHHHHHHHHH---HHHhhhcccchhhHHHHHHHHHhchhHHHHH
Confidence            6666666554331100  01112221111 0011221111111111   111111 122345788888889988889999


Q ss_pred             HHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH
Q 007863          299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI  378 (587)
Q Consensus       299 ~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  378 (587)
                      .|++++..+....+.+.  ...+..+..+++.+...+|.+|.+.|.+++...+....  ..-+-+..+..|.+..+-.-|
T Consensus       264 EaArai~~l~~~~~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~--~cN~elE~lItd~NrsIat~A  339 (865)
T KOG1078|consen  264 EAARAIVSLPNTNSREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT--VCNLDLESLITDSNRSIATLA  339 (865)
T ss_pred             HHHHHHhhccccCHhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc--ccchhHHhhhcccccchhHHH
Confidence            99998888866554442  22566677788899999999999999999866543221  122346667777766655554


Q ss_pred             HHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC-CCchHHHHHHH
Q 007863          379 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAA  457 (587)
Q Consensus       379 ~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~  457 (587)
                      ...+-+-    |.+.-.+.++..+..++.|-+...+..+++.+..++..++..  ...+++.+.+.++ +.-.+-+.+.+
T Consensus       340 ITtLLKT----G~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m~FL~~~Lr~eGg~e~K~aiv  413 (865)
T KOG1078|consen  340 ITTLLKT----GTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMMNFLSNMLREEGGFEFKRAIV  413 (865)
T ss_pred             HHHHHHh----cchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHHHHHHHHHHhccCchHHHHHH
Confidence            4444332    333333556666666666555444555556666666655433  2345555555554 34557777788


Q ss_pred             HHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863          458 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       458 ~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~  537 (587)
                      +++-.++......  .+..+..+.+.+.|..  .+.-+...+..++...+....-...+..+.+...=.+..||.+|..+
T Consensus       414 d~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~a  489 (865)
T KOG1078|consen  414 DAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSA  489 (865)
T ss_pred             HHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHH
Confidence            8887777644332  3555666666665543  34556666666665443322222333333333333578899999999


Q ss_pred             HHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          538 LQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       538 l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +..+.  .+.......+.-.+..++.|+|..||.+|.-++..+.
T Consensus       490 laKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  490 LAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            98887  3334445567777778889999999999888887765

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.1e-05  Score=82.09  Aligned_cols=348  Identities=13%  Similarity=0.098  Sum_probs=203.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--
Q 007863          158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--  235 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--  235 (587)
                      ++.+..+.+-+...+......+|.....++..+...= .+..++.+++....++++++...--.+.-++..+.+...-  
T Consensus        84 e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D-~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~  162 (1010)
T KOG1991|consen   84 EEDKAVIRENILETIVQVPELIRVQLTACLNTIIKAD-YPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKK  162 (1010)
T ss_pred             hHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhcc
Confidence            3445555555555544446778888888877766542 2467889999999999999888888888888888765431  


Q ss_pred             -----------hhhhhchHHHHHHhcCCCchH---HHHHHHHHHHHHHHH-hCCCCcccc----hHHHHHHhcC------
Q 007863          236 -----------QDCVAHILPVIVNFSQDKSWR---VRYMVANQLYELCEA-VGPEPTRSD----VVPAYVRLLR------  290 (587)
Q Consensus       236 -----------~~~~~~l~~~l~~~~~d~~~~---vR~~a~~~l~~l~~~-~~~~~~~~~----l~~~l~~~l~------  290 (587)
                                 +...+.+...+..++.+++..   ..+..++.+-..+.. ++......+    .+.++...++      
T Consensus       163 ~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E  242 (1010)
T KOG1991|consen  163 DEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVE  242 (1010)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChh
Confidence                       112233444444556665443   334444444333322 222222222    2333333332      


Q ss_pred             ----C-------ChHHHHHHHHHhHHHHHHhhCHHH------------H----HHhHHHHHhHhcC---C---CcHHHHH
Q 007863          291 ----D-------NEAEVRIAAAGKVTKICRILNPEL------------A----IQHILPCVKELSS---D---SSQHVRS  337 (587)
Q Consensus       291 ----d-------~~~~vr~~a~~~l~~l~~~~~~~~------------~----~~~~~~~l~~~~~---d---~~~~vr~  337 (587)
                          |       +=|.+++-|+..+.++...+|...            +    ...++..+.+.+.   .   -+++|-.
T Consensus       243 ~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~  322 (1010)
T KOG1991|consen  243 VLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLY  322 (1010)
T ss_pred             cccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence                2       225688899999999998876421            1    1112222222221   1   2345555


Q ss_pred             HHHHHHHhhhhhh------chH---HHHHhHHHHHHH------hc-CCCChHHHH-------------HHHHHhHHhhhh
Q 007863          338 ALATVIMGMAPIL------GKD---ATIEQLLPIFLS------LL-KDEFPDVRL-------------NIISKLDQVNQV  388 (587)
Q Consensus       338 ~a~~~l~~l~~~~------~~~---~~~~~l~~~l~~------~l-~d~~~~vr~-------------~a~~~l~~i~~~  388 (587)
                      .+...+......-      ++.   .+.+.+.|.+.-      +. .|+.+-+|.             ++...+..++..
T Consensus       323 ~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~K  402 (1010)
T KOG1991|consen  323 YLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSK  402 (1010)
T ss_pred             HHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHh
Confidence            5555444433211      110   011223333321      00 123334444             456666777776


Q ss_pred             hchhhHhhhhHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhCh-h----hHHHHHHHHHHHHcCCCchHHHHH
Q 007863          389 IGIDLLSQSLLPAIVELAE--------DRHWRVRLAIIEYIPLLASQLGV-G----FFDDKLGALCMQWLKDKVYSIRDA  455 (587)
Q Consensus       389 ~~~~~~~~~~~~~l~~~~~--------~~~~~vr~~~~~~l~~l~~~~~~-~----~~~~~l~~~l~~~l~d~~~~vr~~  455 (587)
                      -|++.+ +.+++.+.+.+.        ..+++-+..++..++.++..+.. .    .+...+++.+...++++.--.|..
T Consensus       403 R~ke~l-~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrar  481 (1010)
T KOG1991|consen  403 RGKETL-PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRAR  481 (1010)
T ss_pred             cchhhh-hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHH
Confidence            666554 567777666654        24678888999999999976632 2    223345666777789999999999


Q ss_pred             HHHHHHHHH-HHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccC
Q 007863          456 AANNVKRLA-EEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG  507 (587)
Q Consensus       456 a~~~l~~l~-~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~  507 (587)
                      ||..++.++ ..+........++....+.+. |++-.||..|+.++..+.....
T Consensus       482 ac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~  535 (1010)
T KOG1991|consen  482 ACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE  535 (1010)
T ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence            999999998 345444334455555555554 8889999999999999987554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.14  E-value=6.3e-09  Score=93.53  Aligned_cols=187  Identities=20%  Similarity=0.249  Sum_probs=128.6

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HH---HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD  353 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~---~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  353 (587)
                      +...|..--.+.+|+.|..++..+..+...-.+.    .+   ...++..+...+.|....|-..|+.++..++...+..
T Consensus         8 ~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~   87 (228)
T PF12348_consen    8 ILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH   87 (228)
T ss_dssp             S-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh
Confidence            4444444446677888888888888877754111    11   1233355666777777888899999999998888743


Q ss_pred             --HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc-hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-
Q 007863          354 --ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-  429 (587)
Q Consensus       354 --~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~-~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-  429 (587)
                        .+.+.++|.+.+.+.|....+|..+..+|..++...+ ..   ..+.+.+.....++++.+|..++.++..+....+ 
T Consensus        88 ~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~  164 (228)
T PF12348_consen   88 FEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILEKWGS  164 (228)
T ss_dssp             GHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence              3567899999999999999999999999999998876 22   2237777788899999999999999999988777 


Q ss_pred             -hhh-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863          430 -VGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  470 (587)
Q Consensus       430 -~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                       ...     ..+.+.+.+..++.|.+++||..|-.++..+.+.+|..
T Consensus       165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence             111     23668999999999999999999999999999988765

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.7e-06  Score=84.75  Aligned_cols=358  Identities=11%  Similarity=0.104  Sum_probs=221.5

Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHH
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPA  284 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~  284 (587)
                      ..+.+-++++++.+|-...+.+.++    .+.+..+.+.|.+..++++.+..||+.|.-++..|...+..  ..++.-..
T Consensus       102 na~RkDLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~--L~pDapeL  175 (948)
T KOG1058|consen  102 NAYRKDLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH--LIPDAPEL  175 (948)
T ss_pred             HHHhhhccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh--hcCChHHH
Confidence            4455667888899998887777654    34557888999999999999999999999998888765221  12222233


Q ss_pred             HHHh-cCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHH
Q 007863          285 YVRL-LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF  363 (587)
Q Consensus       285 l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  363 (587)
                      +... ..+.++..+..|.-.|-..    .++...+.+...+.+ ..+-+........+.+...+..-  .......+..+
T Consensus       176 i~~fL~~e~DpsCkRNAFi~L~~~----D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i  248 (948)
T KOG1058|consen  176 IESFLLTEQDPSCKRNAFLMLFTT----DPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCI  248 (948)
T ss_pred             HHHHHHhccCchhHHHHHHHHHhc----CHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHH
Confidence            3332 3456677777766555433    444333333333322 12233455566666665555421  12233456677


Q ss_pred             HHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHH
Q 007863          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM  442 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~  442 (587)
                      ..+|..+++.|+..++.++..+...  +.. .......+.+++ +.++-.++.-.+.-+..+..  ..+...+.+.--++
T Consensus       249 ~~lL~stssaV~fEaa~tlv~lS~~--p~a-lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvL  323 (948)
T KOG1058|consen  249 YNLLSSTSSAVIFEAAGTLVTLSND--PTA-LKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVL  323 (948)
T ss_pred             HHHHhcCCchhhhhhcceEEEccCC--HHH-HHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHH
Confidence            7888888999999988887776543  111 122233333333 33444555555555555442  12223344555567


Q ss_pred             HHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh---hcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863          443 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM---INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  519 (587)
Q Consensus       443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~---l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l  519 (587)
                      +.+..++-+||..++...-.++..-..+.+...+-..+.+-   -.+.+...|+.-++++..++-.++.  +...++|.+
T Consensus       324 rvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~l  401 (948)
T KOG1058|consen  324 RVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLL  401 (948)
T ss_pred             HHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHH
Confidence            88899999999999988777776433322222111122211   1334677899999999988876643  578899999


Q ss_pred             HhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          520 INASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      ++.+.|.++.--...+..+....+.++.-  .+...++..+.+.   ....+-+.|.+.++..++..+
T Consensus       402 l~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~i---rS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  402 LDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQI---RSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhh---cccccchhHHHHHHHHHhhhH
Confidence            99999999988888888888888877541  2223333333333   345566778888888777654

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=99.08  E-value=1.5e-08  Score=103.45  Aligned_cols=358  Identities=16%  Similarity=0.181  Sum_probs=237.3

Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc-ccch
Q 007863          203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RSDV  281 (587)
Q Consensus       203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~l  281 (587)
                      +++.....+..+....|.....++..+...    ......+..+..+.+-..+..-..++..+..+....|.... ...+
T Consensus        64 l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~----~~~~~~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~  139 (815)
T KOG1820|consen   64 LLSFGLKCLDSKRVNIRDTKTQSLLRIGKL----EDIKEVVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAF  139 (815)
T ss_pred             eccchhhhcccccccccCcchhHHHHHHHh----hhhHHHHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccc
Confidence            444445555555556666666666665221    12344556666677777777777777777778777664332 2234


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhH
Q 007863          282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQL  359 (587)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l  359 (587)
                      ++.+-++.   +..||..+.+.+..+....|....     +.          -.+..+....+.+..+.|...  +...-
T Consensus       140 ~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~-----~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~  201 (815)
T KOG1820|consen  140 IKHVGSLA---DKNVRSEASKLLVEIYRWTGDASK-----PL----------LFKASAPGLMGKLGSYQGKSMMSFFNEK  201 (815)
T ss_pred             cccCcccc---ccccchhhcccchhhhhhcCCCcC-----cc----------cchhhhHHHHHHHHhhcccccccccccc
Confidence            44444444   567999999999999876665421     10          114444445555544443211  11111


Q ss_pred             HHHHHHhcCC------------CChHHHHHHHHHhH--HhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007863          360 LPIFLSLLKD------------EFPDVRLNIISKLD--QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (587)
Q Consensus       360 ~~~l~~~l~d------------~~~~vr~~a~~~l~--~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~  425 (587)
                      .+.......+            +...++...-..-.  .-...+...+....+-+.+...+.+++|.-|..+++.+....
T Consensus       202 ~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l  281 (815)
T KOG1820|consen  202 RPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAIL  281 (815)
T ss_pred             ccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHH
Confidence            1111111111            11111111000000  001112233445667777888889999999999999988777


Q ss_pred             HhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHH
Q 007863          426 SQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAIS  500 (587)
Q Consensus       426 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~  500 (587)
                      ..-+   ...+...+...+-....|.+..|-..|+.++..++..++..+  +...++|.+++.+.+....+|.++..++.
T Consensus       282 ~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d  361 (815)
T KOG1820|consen  282 EEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALD  361 (815)
T ss_pred             hccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHH
Confidence            6544   112223344445556789999999999999999999888764  45778999999999999999999999999


Q ss_pred             HhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHHHHhHHHHHHHhcCCCCccHHHHHHHH
Q 007863          501 LLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEKSIRPCLVELSEDPDVDVRFFATQA  576 (587)
Q Consensus       501 ~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~~~Vr~~a~~a  576 (587)
                      .++...+    ...+.+.+..++++.+|.+|..+...+.......+.    ......+.|.+....+|.+.+||..|.++
T Consensus       362 ~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~  437 (815)
T KOG1820|consen  362 AILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEA  437 (815)
T ss_pred             HHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHH
Confidence            8887443    457888999999999999999999999999888773    35556789999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 007863          577 LQSKDQVMMS  586 (587)
Q Consensus       577 l~~l~~~~~~  586 (587)
                      ++.+..++|.
T Consensus       438 ~~~v~k~~Ge  447 (815)
T KOG1820|consen  438 VAAVMKVHGE  447 (815)
T ss_pred             HHHHHHHhhH
Confidence            9999999884

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=7.6e-06  Score=79.74  Aligned_cols=456  Identities=11%  Similarity=0.091  Sum_probs=217.6

Q ss_pred             HHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH-HHHHHHHHHH
Q 007863           91 LETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYR  169 (587)
Q Consensus        91 l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-~~~~l~~~l~  169 (587)
                      +.+-+.+.|+.-..-|+.+++.++..--.+.+...+-.++..  .+....+|..|+-.+-.+++..++- ....+.+.+.
T Consensus       116 iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv  193 (938)
T KOG1077|consen  116 IKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIV  193 (938)
T ss_pred             HHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHH
Confidence            333344566666677777777776543223333333222221  1112334444443333455555443 3447778888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHh
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF  249 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  249 (587)
                      .++.|.+..|-.++...+..+++..++ .+...+.+.+..+..    .++...........-.++.....-.++..+.-+
T Consensus       194 ~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~~avs~L~r----iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~  268 (938)
T KOG1077|consen  194 HLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLPLAVSRLSR----IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY  268 (938)
T ss_pred             HHhCccccceeeehHHHHHHHHHcCCH-HHhhhHHHHHHHHHH----HHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence            888888888888888888888877654 333222222211110    000000000001011111111111223333333


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhc
Q 007863          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELS  328 (587)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~  328 (587)
                      -.-.++.+|....+++..+.....+....+++          ....++.+.+--.-.++-+++++ .........+.+++
T Consensus       269 p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~v----------q~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fl  338 (938)
T KOG1077|consen  269 PTPEDPSTRARLNEVLERILNKAQEPPKSKKV----------QHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFL  338 (938)
T ss_pred             CCCCCchHHHHHHHHHHHHHhccccCccccch----------HhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence            33446667777777777665432211100000          01122233332233333333333 23344555666667


Q ss_pred             CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC-CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc
Q 007863          329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  407 (587)
Q Consensus       329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~  407 (587)
                      .+.+..+|.-+.+.+..++..-.......+-...+...|+ +.+..+|+.++.-|-.++..-..+    .++.-+.+.+.
T Consensus       339 s~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak----~IV~elLqYL~  414 (938)
T KOG1077|consen  339 SHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK----QIVAELLQYLE  414 (938)
T ss_pred             hcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH----HHHHHHHHHHh
Confidence            7788888888888888877543222222223556666666 778888888888888887654433    34444455555


Q ss_pred             CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc---CCCc-hHHHHHHHHHHHHHHHH-hChhhhhhchHHHHHh
Q 007863          408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL---KDKV-YSIRDAAANNVKRLAEE-FGPDWAMQHIVPQVLE  482 (587)
Q Consensus       408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d~~-~~vr~~a~~~l~~l~~~-~~~~~~~~~~~~~l~~  482 (587)
                      ..++.+|...+--+..+++.+..+  ....+..+++++   +|-. .+|       +-.++.. ...+......-..+++
T Consensus       415 tAd~sireeivlKvAILaEKyAtD--y~WyVdviLqLiriagd~vsdeV-------W~RvvQiVvNnedlq~yaak~~fe  485 (938)
T KOG1077|consen  415 TADYSIREEIVLKVAILAEKYATD--YSWYVDVILQLIRIAGDYVSDEV-------WYRVVQIVVNNEDLQGYAAKRLFE  485 (938)
T ss_pred             hcchHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHhcccccHHH-------HHHhheeEecchhhhHHHHHHHHH
Confidence            677788888777666666655443  223344444433   1111 111       1111110 0111112222333333


Q ss_pred             hhcCCc--cHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHH
Q 007863          483 MINNPH--YLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL  558 (587)
Q Consensus       483 ~l~~~~--~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l  558 (587)
                      .+..+.  ...-.++...+|.+++.+..+.  .....+..+-+-+.-.++..|...+.+.-.++...  +.+...+...+
T Consensus       486 ~Lq~~a~hE~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~--PEi~~~v~~vF  563 (938)
T KOG1077|consen  486 YLQKPACHENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLF--PEIKSNVQKVF  563 (938)
T ss_pred             HHhhhHHHHHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhC--hhhhHHHHHHH
Confidence            333331  1112233344444444322110  11223333334444445666666666665555544  23344555555


Q ss_pred             HHhcCCCCccHHHHHHHHHH
Q 007863          559 VELSEDPDVDVRFFATQALQ  578 (587)
Q Consensus       559 ~~l~~d~~~~Vr~~a~~al~  578 (587)
                      ....+-.|.+++.+|.+=|.
T Consensus       564 q~~~n~~D~ElQqRa~EYLq  583 (938)
T KOG1077|consen  564 QLYSNLIDVELQQRAVEYLQ  583 (938)
T ss_pred             HhhcccCCHHHHHHHHHHHH
Confidence            55556677777777766543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=99.06  E-value=3.1e-05  Score=77.94  Aligned_cols=212  Identities=13%  Similarity=0.089  Sum_probs=139.4

Q ss_pred             CChHHHHHHHHHhHHhhhhh--chhhHhhhhHHHHHH-HhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC
Q 007863          370 EFPDVRLNIISKLDQVNQVI--GIDLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK  446 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~--~~~~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  446 (587)
                      ..|..-..+...++.+.+..  .+. +.+.++....+ +..|..+-+|..+++.+...++.---..+.+.++..++++..
T Consensus       462 e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas  540 (1005)
T KOG2274|consen  462 ESPFLLLRAFLTISKFSSSTVINPQ-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLAS  540 (1005)
T ss_pred             cCHHHHHHHHHHHHHHHhhhccchh-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcc
Confidence            44555556666677666542  222 22333333333 335667778888888877666332223345778888888899


Q ss_pred             CCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhh--cCCccHHHHHHHHHHHHhhcccC-hHHHHHhHHHHHH
Q 007863          447 DKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMI--NNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVI  520 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~  520 (587)
                      +...+|-....++|...++. .+++   ....+.|.....+  ...++.+-..+-.++..+.+... .+.+.+..+|.++
T Consensus       541 ~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPsli  619 (1005)
T KOG2274|consen  541 KSSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLI  619 (1005)
T ss_pred             cccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            99999999999999888873 4433   2366777766642  22234566666677766665221 1235788899999


Q ss_pred             hhcCCCC----ccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHH
Q 007863          521 NASKDRV----PNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       521 ~~l~d~~----~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l-~~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      +.+.-+.    +..-..++..|..+...-+++   .+...++|++.++ +...|...-.++.+||..+.+.
T Consensus       620 sil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  620 SVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            8887665    667778888888887775543   5667788888884 5566777888999998877654

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=3.7e-05  Score=78.27  Aligned_cols=131  Identities=11%  Similarity=0.092  Sum_probs=91.1

Q ss_pred             HHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC------CC--ChHHHHHHHHHhHHhhhhhchh-----hHhhhhHHHHH
Q 007863          337 SALATVIMGMAPILGKDATIEQLLPIFLSLLK------DE--FPDVRLNIISKLDQVNQVIGID-----LLSQSLLPAIV  403 (587)
Q Consensus       337 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~--~~~vr~~a~~~l~~i~~~~~~~-----~~~~~~~~~l~  403 (587)
                      .++...+..++..-|++ ..+.+++.+...++      .+  ++.-+.+|+..++.+++.+..+     .+...+.+.+.
T Consensus       390 ~Aa~~~l~~~~~KR~ke-~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf  468 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKE-TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF  468 (1010)
T ss_pred             HHHHHHHHHHHHhcchh-hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence            34555555565554443 34566666666665      22  4556678888999888776543     22233445555


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHH-HhhChhhHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhC
Q 007863          404 ELAEDRHWRVRLAIIEYIPLLA-SQLGVGFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFG  468 (587)
Q Consensus       404 ~~~~~~~~~vr~~~~~~l~~l~-~~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~  468 (587)
                      ..++++..-.|..++..++.++ -.+.........+....+++. |++-.||..|+-+|..++....
T Consensus       469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~  535 (1010)
T KOG1991|consen  469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE  535 (1010)
T ss_pred             HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence            5668888899999999999998 344444445667788888887 8899999999999999987654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.04  E-value=7.7e-09  Score=100.58  Aligned_cols=255  Identities=13%  Similarity=0.206  Sum_probs=206.2

Q ss_pred             cCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC
Q 007863          289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK  368 (587)
Q Consensus       289 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  368 (587)
                      +.=.+.+-|..-...|......+..+.....++|.+...+.-.+  --..+...+-.++..+....+...+.|.+.++++
T Consensus       263 l~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~  340 (690)
T KOG1243|consen  263 LRLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFK  340 (690)
T ss_pred             cccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhc
Confidence            44455677777777787777777777777888888876654333  0111112222334444555577889999999999


Q ss_pred             CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC
Q 007863          369 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK  448 (587)
Q Consensus       369 d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  448 (587)
                      ..+..+|...++.+..++..+..+.+.+.++|.+...+.|.+..+|...+..+..++..++.......++..+-+.-.|.
T Consensus       341 ~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~  420 (690)
T KOG1243|consen  341 SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDE  420 (690)
T ss_pred             CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccc
Confidence            99999999999999999999999999899999999999999999999999999999999998877788888888888899


Q ss_pred             chHHHHHHHHHHHHHHHHhChhhhhhchHH-HHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863          449 VYSIRDAAANNVKRLAEEFGPDWAMQHIVP-QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV  527 (587)
Q Consensus       449 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~  527 (587)
                      ...+|....-|++++........ ++.++. .....+.|+-..-|.+++..+....+.+.......+++|.+..+..|++
T Consensus       421 ~~~irtntticlgki~~~l~~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e  499 (690)
T KOG1243|consen  421 HGGIRTNTTICLGKIAPHLAASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPE  499 (690)
T ss_pred             cCcccccceeeecccccccchhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcc
Confidence            99999999999999988765543 333333 4444588998889999999999999888888889999999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhhc
Q 007863          528 PNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       528 ~~vR~~a~~~l~~l~~~~~  546 (587)
                      ..+|..+-+++........
T Consensus       500 ~~vr~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  500 KTVRDTAEKAIRQFLEKLE  518 (690)
T ss_pred             cchhhHHHHHHHHHHhhhh
Confidence            9999999999988776643

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.03  E-value=4.2e-06  Score=84.49  Aligned_cols=141  Identities=16%  Similarity=0.113  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhc
Q 007863          162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH  241 (587)
Q Consensus       162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (587)
                      ..+++-+.+.....|.++++-.=-.|..+++..++  ..-..++.+.+-++|+++.+|..|++.++.+-.    .+....
T Consensus        54 ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~----~el~~~  127 (757)
T COG5096          54 SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--LALLAVNTIQKDLQDPNEEIRGFALRTLSLLRV----KELLGN  127 (757)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHHHHHHHHHhhccCCCHHHHHHHHHHHHhcCh----HHHHHH
Confidence            33444444444456666666666666665554432  222345566666777777777777777765432    345666


Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc-hHHHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD-VVPAYVRLLRDNEAEVRIAAAGKVTKICR  309 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                      +++.+.+++.|+++.||+.|+-++.++... +++..... ....+..++.|.++.|..+|+.++..+..
T Consensus       128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         128 IIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            777777777777777777777777776543 22333333 56666667777777777777777766644

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=6.3e-06  Score=81.40  Aligned_cols=423  Identities=14%  Similarity=0.110  Sum_probs=233.1

Q ss_pred             HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863           90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR  169 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~  169 (587)
                      .+.+-....++..|..|+++|..+...--...+..    ++.+..-+..+.+..+|..---.+. ..+....+.+...+.
T Consensus       104 slmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~ier----y~kqaivd~~~avSsaalvss~hll-~~~~~~vkrw~neiq  178 (865)
T KOG1078|consen  104 SLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIER----YMKQAIVDKNPAVSSAALVSSYHLL-PISFDVVKRWANEVQ  178 (865)
T ss_pred             HHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHH----HHHhHeeccccccchHHHHHHhhhh-cccHHHHHHHHHhhh
Confidence            34444556678889999999888876533222333    3333333444444444332111122 233555666666677


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-hcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEE-LTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN  248 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  248 (587)
                      ....+.+..++.-+...|-.+-+.-  .-....++..+.. .+.  ++--+..-++....+.+..  ......+.+++..
T Consensus       179 ea~~s~~~m~QyHalglLyqirk~d--rla~sklv~~~~~~~~~--~~~A~~~lir~~~~~l~~~--~~~~s~~~~fl~s  252 (865)
T KOG1078|consen  179 EAVNSDNIMVQYHALGLLYQIRKND--RLAVSKLVQKFTRGSLK--SPLAVCMLIRIASELLKEN--QQADSPLFPFLES  252 (865)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHcccccc--chhHHHHHHHHHHHHhhhc--ccchhhHHHHHHH
Confidence            7777777777766666665554321  1112222222222 111  1211222222222222111  2234568888899


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhc
Q 007863          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS  328 (587)
Q Consensus       249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~  328 (587)
                      ++.++...|-..+++++..+....+.+..  ..+..+..+++.+..-.|.+|.+.|..++-..+...  ..--.-+..+.
T Consensus       253 ~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~cN~elE~lI  328 (865)
T KOG1078|consen  253 CLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TVCNLDLESLI  328 (865)
T ss_pred             HHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cccchhHHhhh
Confidence            99999999999999888776544333322  266777888899999999999999999987654321  11223355667


Q ss_pred             CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh---cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHH
Q 007863          329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL---LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  405 (587)
Q Consensus       329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~  405 (587)
                      +|.+..+-.-|+..+-.-+.    +...+.++..+..+   +.|+..-|...+..+|...   +....  ..+++.+.++
T Consensus       329 td~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~---fp~k~--~~~m~FL~~~  399 (865)
T KOG1078|consen  329 TDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLK---FPRKH--TVMMNFLSNM  399 (865)
T ss_pred             cccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhh---ccHHH--HHHHHHHHHH
Confidence            78777666666665554443    22333333333333   4455555555555554443   33222  3466666666


Q ss_pred             hcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhh
Q 007863          406 AED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI  484 (587)
Q Consensus       406 ~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l  484 (587)
                      +.+ .....+...++.+..+.......  +..-+..+-.++.|..  -+.-+...|..+.+.......-...+-.+.+..
T Consensus       400 Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv  475 (865)
T KOG1078|consen  400 LREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV  475 (865)
T ss_pred             HHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhhHHHhhhh
Confidence            544 45666777777776666532211  1112222223333322  223333444444332211111123333444443


Q ss_pred             cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          485 NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       485 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                      -=.+..+|.+|+.++.+++  .+.+...+.+...+.+++.|.+..||..|-..+..+-
T Consensus       476 iLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  476 ILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             hhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            3357789999999999988  3344446778888889999999999999988888776

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.99  E-value=4.1e-06  Score=82.14  Aligned_cols=329  Identities=16%  Similarity=0.159  Sum_probs=184.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-cccCchhHHHHHHHHHHHHhcccChh
Q 007863          158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEEL-TQDDQDSVRLLAVEGCGALGKLLEPQ  236 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l-~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                      ++..+.+.|.+...+++..+.||+.|.-++..+.+...  ...+..-.++..+ ..+.++..++.|.-.|...    .++
T Consensus       129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~----D~E  202 (948)
T KOG1058|consen  129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFLLTEQDPSCKRNAFLMLFTT----DPE  202 (948)
T ss_pred             HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHHHhccCchhHHHHHHHHHhc----CHH
Confidence            44566777888888888888898888888888877642  2222222223222 3344666666666555432    112


Q ss_pred             hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH
Q 007863          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA  316 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  316 (587)
                      .-.+++...+.+ ..+-+........+.+...+..-  .......+..+..++...++.|+..|+.++..++..  +. .
T Consensus       203 rAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~--p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~--p~-a  276 (948)
T KOG1058|consen  203 RALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLAN--PAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND--PT-A  276 (948)
T ss_pred             HHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcC--HHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC--HH-H
Confidence            112222222111 12223444555555555555421  111334667777777777788888877777666542  22 1


Q ss_pred             HHhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHh
Q 007863          317 IQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS  395 (587)
Q Consensus       317 ~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~  395 (587)
                      .......+.+++ +.++-+++.-...-+..+.  ...+...+.+.--++..+..++-+||..++...-.+...-..+++.
T Consensus       277 lk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv  354 (948)
T KOG1058|consen  277 LKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV  354 (948)
T ss_pred             HHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH
Confidence            222333333333 2233345444444444443  1223344555555677888899999999887766666554433332


Q ss_pred             hhhHHHHHHH---hcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh
Q 007863          396 QSLLPAIVEL---AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA  472 (587)
Q Consensus       396 ~~~~~~l~~~---~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  472 (587)
                      +.+-..+.+-   -.+.+...|...++.+...+-.++.  +...++|.++.++.|.+...-...+..+....+.+..-  
T Consensus       355 ~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L--  430 (948)
T KOG1058|consen  355 QFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL--  430 (948)
T ss_pred             HHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH--
Confidence            2222222211   1345667899999999888765543  46778999999999999877777777777777665432  


Q ss_pred             hhchHHHHHhhhc-CCccHHHHHHHHHHHHhhc
Q 007863          473 MQHIVPQVLEMIN-NPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       473 ~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~  504 (587)
                      ...++..+.+.+. -....+-.++++.+|..+.
T Consensus       431 r~~ii~~l~~~~~~irS~ki~rgalwi~GeYce  463 (948)
T KOG1058|consen  431 RASIIEKLLETFPQIRSSKICRGALWILGEYCE  463 (948)
T ss_pred             HHHHHHHHHHhhhhhcccccchhHHHHHHHHHh
Confidence            3334444443321 1233344566666666554

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.99  E-value=4e-06  Score=82.23  Aligned_cols=306  Identities=18%  Similarity=0.184  Sum_probs=187.8

Q ss_pred             chHHHHHHHHHHHHHHHHhCCCC---c-----ccchHHHHHHhcC-----C--ChHHHHHHHHHhHHHHHHhhCHHHH--
Q 007863          254 SWRVRYMVANQLYELCEAVGPEP---T-----RSDVVPAYVRLLR-----D--NEAEVRIAAAGKVTKICRILNPELA--  316 (587)
Q Consensus       254 ~~~vR~~a~~~l~~l~~~~~~~~---~-----~~~l~~~l~~~l~-----d--~~~~vr~~a~~~l~~l~~~~~~~~~--  316 (587)
                      +...-..++.++..+........   .     ...++|.+.+...     +  .++.+-..+...+..+...++.+..  
T Consensus        56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~  135 (415)
T PF12460_consen   56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE  135 (415)
T ss_pred             ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            45555666666666655443222   0     1125555555431     2  2356777777777888888777643  


Q ss_pred             -HHhHHHHHhH-----hcC-CCc--HHHHHHHHHHHHhhhhhhchHHH---HHhHHHHHHHh-cCCCChHHHHHHHHHhH
Q 007863          317 -IQHILPCVKE-----LSS-DSS--QHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSL-LKDEFPDVRLNIISKLD  383 (587)
Q Consensus       317 -~~~~~~~l~~-----~~~-d~~--~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~-l~d~~~~vr~~a~~~l~  383 (587)
                       .+.+...+..     -+. +.+  +.........+..+...+.++..   .+.++..+..+ .+..++..|..++..++
T Consensus       136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la  215 (415)
T PF12460_consen  136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLA  215 (415)
T ss_pred             HHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence             2333333330     000 111  11111222222222222222211   12234444433 45556899999999999


Q ss_pred             HhhhhhchhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhh--ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 007863          384 QVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLKDKVYSIRDAAANNV  460 (587)
Q Consensus       384 ~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  460 (587)
                      .++.....+...+.++..+.... .......|..+++.+..+.+.+  ........+...+..++.|  +++...+++++
T Consensus       216 ~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f  293 (415)
T PF12460_consen  216 SLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAF  293 (415)
T ss_pred             HHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHH
Confidence            99988765544445555554444 4455666777777777766654  1122245567777888877  77889999999


Q ss_pred             HHHHHHhCh---------------hhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH---HHhHHHHHHhh
Q 007863          461 KRLAEEFGP---------------DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINA  522 (587)
Q Consensus       461 ~~l~~~~~~---------------~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~  522 (587)
                      +.+......               ..+...++|.+.+...+.+...|...+.++..+.++++...+   .+.++|.++..
T Consensus       294 ~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqs  373 (415)
T PF12460_consen  294 GILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQS  373 (415)
T ss_pred             hhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHH
Confidence            888764211               113467888888887777777899999999999999887643   67899999999


Q ss_pred             cCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHh
Q 007863          523 SKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVEL  561 (587)
Q Consensus       523 l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l  561 (587)
                      +.-+++.+|..++.++..+...-+.  ....+.++|.|.++
T Consensus       374 L~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l  414 (415)
T PF12460_consen  374 LSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL  414 (415)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence            9989999999999999999877532  13445566666554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.93  E-value=5.2e-06  Score=77.21  Aligned_cols=290  Identities=16%  Similarity=0.109  Sum_probs=179.4

Q ss_pred             hhHHHHHHHHHHHHhcccCh-hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcc----cch--HHHHHHh
Q 007863          216 DSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR----SDV--VPAYVRL  288 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~----~~l--~~~l~~~  288 (587)
                      ..+|..+...+..++.+++- ....-.+...+.....+..+.+...++.++.++....+.+..+    ..+  -++..-+
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~  348 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM  348 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence            45888888888888887764 3345556677777778889999999999999988776632211    111  1122222


Q ss_pred             cC--------CC-hHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhchH---
Q 007863          289 LR--------DN-EAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKD---  353 (587)
Q Consensus       289 l~--------d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~---  353 (587)
                      +.        |+ .+....+.+.++.+++..-..  +.-.....+.+...+.|. +.-+|.+|.++++.+.-+-+..   
T Consensus       349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~  428 (728)
T KOG4535|consen  349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDV  428 (728)
T ss_pred             ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhH
Confidence            21        11 233556666666666442110  000124556666666554 5568888888887765544422   


Q ss_pred             HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch-----h----hHhhhhHHHHHHHh---cCCCcHHHHHHHHHH
Q 007863          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----D----LLSQSLLPAIVELA---EDRHWRVRLAIIEYI  421 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~-----~----~~~~~~~~~l~~~~---~~~~~~vr~~~~~~l  421 (587)
                      .+.......+...+.|..-.+|..++++++.|...+-.     +    .+....+.......   .-.+.+||..+++.+
T Consensus       429 ~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraL  508 (728)
T KOG4535|consen  429 IFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRAL  508 (728)
T ss_pred             HHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            23445556667778888889999999999999876521     1    12222232222221   235688999999999


Q ss_pred             HHHHHhhChh---hHH----HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh----hhhhhchHHHHHhhhcC-Ccc
Q 007863          422 PLLASQLGVG---FFD----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP----DWAMQHIVPQVLEMINN-PHY  489 (587)
Q Consensus       422 ~~l~~~~~~~---~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~l~~-~~~  489 (587)
                      +.+.+.+.+-   .+.    ..+...+..........||..++.+++++.++-.-    ......++|.+..++.+ .|+
T Consensus       509 gnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NF  588 (728)
T KOG4535|consen  509 GNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNF  588 (728)
T ss_pred             hhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccc
Confidence            9888765421   011    11122222223345678999999999999875322    12346778888877554 689


Q ss_pred             HHHHHHHHHHHHhhcc
Q 007863          490 LYRMTILQAISLLAPV  505 (587)
Q Consensus       490 ~~r~~a~~~l~~l~~~  505 (587)
                      .+|..|+.++..-.+-
T Consensus       589 KVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  589 KVRIRAAAALSVPGKR  604 (728)
T ss_pred             eEeehhhhhhcCCCCc
Confidence            9999999998777653

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=3.7e-05  Score=75.55  Aligned_cols=161  Identities=15%  Similarity=0.102  Sum_probs=112.8

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhc
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH  475 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  475 (587)
                      +..-|.|.+++.|.++-+|...+-.+..--..-|..-.   +-.++--...|.+.+||.+|.-+||-++-.      ...
T Consensus       518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnka---ir~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~  588 (929)
T KOG2062|consen  518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKA---IRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPE  588 (929)
T ss_pred             hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhh---HHHhhcccccccchHHHHHHHHHheeeEec------Chh
Confidence            35667888889999999998876655433222233222   222333346899999999999999977632      234


Q ss_pred             hHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHH
Q 007863          476 IVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEK  552 (587)
Q Consensus       476 ~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~  552 (587)
                      .+|...+++. +-|+.||..++.+++-.+..-|..    ..+..+..+..|++.-||+.|+-+++.|.-...+.  +-..
T Consensus       589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~  664 (929)
T KOG2062|consen  589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVN  664 (929)
T ss_pred             hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHH
Confidence            5566666654 458999999999999988876654    56667777788999999999999998886443321  3335


Q ss_pred             hHHHHHHHhcCCCCccH
Q 007863          553 SIRPCLVELSEDPDVDV  569 (587)
Q Consensus       553 ~i~~~l~~l~~d~~~~V  569 (587)
                      .+...+.+..+|+..++
T Consensus       665 ~frk~l~kvI~dKhEd~  681 (929)
T KOG2062|consen  665 GFRKQLEKVINDKHEDG  681 (929)
T ss_pred             HHHHHHHHHhhhhhhHH
Confidence            56677777778877764

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=8.5e-05  Score=74.12  Aligned_cols=535  Identities=15%  Similarity=0.134  Sum_probs=267.6

Q ss_pred             CCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCc----CCc
Q 007863            6 EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYV----GGL   81 (587)
Q Consensus         6 ~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~----~~~   81 (587)
                      .+|..+...+..=-++|+.+|..|.++|......   ......++.++.+..- +...|.+++-.+.+.++.-    ++.
T Consensus         2 ~~le~l~~~l~qTl~pdps~rk~aEr~L~~~e~q---~~y~l~lL~Lv~~~~~-d~~~r~aaav~fKN~iKr~W~~~~~~   77 (960)
T KOG1992|consen    2 ANLETLANYLLQTLSPDPSVRKPAERALRSLEGQ---QNYPLLLLNLVANGQQ-DPQIRVAAAVYFKNYIKRNWIPAEDS   77 (960)
T ss_pred             ccHHHHHHHHHhcCCCCCccCchHHHHHHHhccC---CCchHHHHHHHhccCc-ChhHHHHHHHHHHHHHHhccCcCCCC
Confidence            4566666666666678899999999999776322   1222344555554221 5567878887776665411    111


Q ss_pred             ------chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC
Q 007863           82 ------EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS  155 (587)
Q Consensus        82 ------~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~  155 (587)
                            +....+...+..+.-+....++..-.+++..+++.--|+.+ +.++|.+..-..+.++.+-.+.....+.++++
T Consensus        78 ~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kW-ptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr  156 (960)
T KOG1992|consen   78 PIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKW-PTLLPDLVARLSSGDFNVINGVLVTAHSIFKR  156 (960)
T ss_pred             ccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhh-HHHHHHHHhhccccchHHHHHHHHHHHHHHHh
Confidence                  12345555666666677788999999999999987666554 45666665544444443333333333333332


Q ss_pred             C-----CHHHH---HH--------HHHHHHH---hc--CCCCHHHHHHHHHHHHHHHHHHh--------h--hhhHHHHH
Q 007863          156 A-----PEALK---TE--------LRTIYRQ---LC--QDDMPMVRRSAATNLGKFAATVE--------A--AHLKSEIM  204 (587)
Q Consensus       156 ~-----~~~~~---~~--------l~~~l~~---l~--~~~~~~vR~~a~~~l~~l~~~~~--------~--~~~~~~i~  204 (587)
                      .     ++...   +.        +..++.+   ++  .+.+...-+.....+.-+++..-        +  ++..+..+
T Consensus       157 ~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM  236 (960)
T KOG1992|consen  157 YRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWM  236 (960)
T ss_pred             cCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHH
Confidence            2     12211   11        1122221   11  11222211112222222222211        1  23344556


Q ss_pred             HHHHHhcccCc-------------hhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhcCCCch-----HHHHHHHHH
Q 007863          205 SIFEELTQDDQ-------------DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDKSW-----RVRYMVANQ  264 (587)
Q Consensus       205 ~~l~~l~~d~~-------------~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~-----~vR~~a~~~  264 (587)
                      +.+.+++.-++             ..+|...++.+.-.....+++  .+.++++.....++.+.++     .....|.+.
T Consensus       237 ~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~F  316 (960)
T KOG1992|consen  237 GAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQF  316 (960)
T ss_pred             HHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            66666655221             135556666655555443331  1233333333344443322     223344555


Q ss_pred             HHHHHHHhCC-----------------------------CCcccchHHHHHHhcCCChHHH-HHHHHHhHHHHHHhhCHH
Q 007863          265 LYELCEAVGP-----------------------------EPTRSDVVPAYVRLLRDNEAEV-RIAAAGKVTKICRILNPE  314 (587)
Q Consensus       265 l~~l~~~~~~-----------------------------~~~~~~l~~~l~~~l~d~~~~v-r~~a~~~l~~l~~~~~~~  314 (587)
                      |..++..-..                             +...++-+..+.+-++..|.+. |.+|+..+..+++.+...
T Consensus       317 Lt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~  396 (960)
T KOG1992|consen  317 LTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQ  396 (960)
T ss_pred             HHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcch
Confidence            5555432110                             1111224444555555444333 667888889999887443


Q ss_pred             ---HHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHhhhhhhc---------------hHHHHHhHHHHHHHhcCCCChHH
Q 007863          315 ---LAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILG---------------KDATIEQLLPIFLSLLKDEFPDV  374 (587)
Q Consensus       315 ---~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~---------------~~~~~~~l~~~l~~~l~d~~~~v  374 (587)
                         .+...+-..+.+...++  +|+-+..++..+..++...+               .+.+...++|.+..--..+.|-+
T Consensus       397 vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pil  476 (960)
T KOG1992|consen  397 VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPIL  476 (960)
T ss_pred             hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccch
Confidence               11222223333444454  68888888877777754321               12233445555543222345777


Q ss_pred             HHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh--------hChhhHHHHHHHHHHHHc-
Q 007863          375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ--------LGVGFFDDKLGALCMQWL-  445 (587)
Q Consensus       375 r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~--------~~~~~~~~~l~~~l~~~l-  445 (587)
                      +..++..+-.+-..+|+.... .++|.+.+.++.+..-+-.-+..++..+...        ++++...+.+.+++..++ 
T Consensus       477 ka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~  555 (960)
T KOG1992|consen  477 KADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFK  555 (960)
T ss_pred             hhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHH
Confidence            777777776666667766553 4788888888887777777677777665433        234444444444444443 


Q ss_pred             --CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHh----hhcCCc-cHHHHHHHHHHHHhhcccChH------H
Q 007863          446 --KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLE----MINNPH-YLYRMTILQAISLLAPVMGSE------I  510 (587)
Q Consensus       446 --~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~----~l~~~~-~~~r~~a~~~l~~l~~~~~~~------~  510 (587)
                        .-+...--+-..+++-++........  +.+.++..+.+    ..++|+ +..-.--.+.++.+....+..      .
T Consensus       556 a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~  635 (960)
T KOG1992|consen  556 ALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSS  635 (960)
T ss_pred             hccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHH
Confidence              21111111222222322222111110  12233333333    344443 333333344444444322111      2


Q ss_pred             HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863          511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  546 (587)
                      +...++|.+...+.....+.--.+...++.+++...
T Consensus       636 ~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~  671 (960)
T KOG1992|consen  636 LEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSS  671 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456677777777766666666667777777766543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.86  E-value=3.7e-06  Score=84.82  Aligned_cols=264  Identities=16%  Similarity=0.138  Sum_probs=160.5

Q ss_pred             cccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC
Q 007863          211 TQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR  290 (587)
Q Consensus       211 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  290 (587)
                      +.+.++..|..|++-+-..   +...+..+.++|-+.+.....+.++|+..--.+-.+++.-+...  --.++.+.+=++
T Consensus        28 l~s~n~~~kidAmK~iIa~---M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--lLavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQ---MSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--LLAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHH---HhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHhhcc
Confidence            5555666666665543332   22222366777777777778899999998888777776533110  124677777789


Q ss_pred             CChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHh-HHHHHHHhcCC
Q 007863          291 DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ-LLPIFLSLLKD  369 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d  369 (587)
                      |+++.+|..|++.++.+    +...+.+.+++.++++++|+++.||..|+-++..+... +++.+.+. ....+..++.|
T Consensus       103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D  177 (757)
T COG5096         103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVAD  177 (757)
T ss_pred             CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhC
Confidence            99999999999999887    44566688999999999999999999999999888643 33334444 56677788899


Q ss_pred             CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHh---cCCC-cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---EDRH-WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~---~~~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      ++|.|...|+.++..+...... .+...+...+.++.   .+.. ...+...++.+..-......  -...+...+....
T Consensus       178 ~dP~Vi~nAl~sl~~i~~e~a~-~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~~~~~~~~~~~~  254 (757)
T COG5096         178 SDPIVIANALASLAEIDPELAH-GYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD--SAEDFEERLSPPL  254 (757)
T ss_pred             CCchHHHHHHHHHHHhchhhhh-hHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC--cHHHHHHhccchh
Confidence            9999999999999998765111 11111111111111   1110 22222222222211111111  0112222233334


Q ss_pred             CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC
Q 007863          446 KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  487 (587)
Q Consensus       446 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~  487 (587)
                      +..+..+-..++..+-.+........+.....|.+..++..+
T Consensus       255 ~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~  296 (757)
T COG5096         255 QHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP  296 (757)
T ss_pred             hhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC
Confidence            566777777777777776665555444444555555554443

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.8e-05  Score=76.51  Aligned_cols=389  Identities=15%  Similarity=0.161  Sum_probs=207.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhh
Q 007863          158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD  237 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~  237 (587)
                      ++.++.+...+..++-+....++....++++.+++. .-+.-|+.++|-+..-++..+-.+-.+....-.++.+....+.
T Consensus        83 ~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~-DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~ef  161 (960)
T KOG1992|consen   83 EEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKR-DFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEF  161 (960)
T ss_pred             hhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcc-ccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCccc
Confidence            345666777777777777788998888888877653 1246788899988888887766555444444455555544332


Q ss_pred             hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--CCChHHHHHHHHHhHHHHHH---hhC
Q 007863          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--RDNEAEVRIAAAGKVTKICR---ILN  312 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~---~~~  312 (587)
                      ..+.+.--++.               +|+.++..+      .+++....++.  .+++...-..-...+--+++   .+.
T Consensus       162 rSdaL~~EIK~---------------vLd~f~~Pl------t~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn  220 (960)
T KOG1992|consen  162 RSDALWLEIKL---------------VLDRFAEPL------TDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLN  220 (960)
T ss_pred             ccHHHHHHHHH---------------HHHhhHhHH------HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhh
Confidence            22222211111               111111110      00000011111  11111100000111111111   110


Q ss_pred             ----HH---HHHHhHHHHHhHhcCC---------Cc----HHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCC
Q 007863          313 ----PE---LAIQHILPCVKELSSD---------SS----QHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       313 ----~~---~~~~~~~~~l~~~~~d---------~~----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~  370 (587)
                          ++   +..+.-++.+.++++-         .+    ..+|...|+.+.-.+.....+  .+.+.++...+.++.+.
T Consensus       221 ~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~  300 (960)
T KOG1992|consen  221 FQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVST  300 (960)
T ss_pred             cccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhc
Confidence                11   2223445555555431         11    356777777766555443322  23455555666777665


Q ss_pred             ChHHHH-----HHHHHhHHhhhhhchhh--HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 007863          371 FPDVRL-----NIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  443 (587)
Q Consensus       371 ~~~vr~-----~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  443 (587)
                      .+..|.     .|...|..++..-.-..  -.+.++..+.+...=+|...|..--            +.|.+.-+..+-+
T Consensus       301 s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDe------------ElFED~pleYiRR  368 (960)
T KOG1992|consen  301 SPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDE------------ELFEDNPLEYIRR  368 (960)
T ss_pred             CCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhH------------HHhccCHHHHHHH
Confidence            554443     44445555443211110  0123344444333334433333322            2223333444445


Q ss_pred             HcCCCc-hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh----hhcCC--ccHHHHHHHHHHHHhhcccC---------
Q 007863          444 WLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE----MINNP--HYLYRMTILQAISLLAPVMG---------  507 (587)
Q Consensus       444 ~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----~l~~~--~~~~r~~a~~~l~~l~~~~~---------  507 (587)
                      -+.-.+ ..=|..|+..++.+++.+... ....+-..+..    ...+|  ||..+..++..+..++...+         
T Consensus       369 DlEGsDvdTRRR~a~dlvrgL~~~fe~~-vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtst  447 (960)
T KOG1992|consen  369 DLEGSDVDTRRRAAIDLVRGLCKNFEGQ-VTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTST  447 (960)
T ss_pred             hcccCCcchhHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeec
Confidence            454333 345788899999999988543 22222222222    33444  89999999998888875321         


Q ss_pred             ------hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          508 ------SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       508 ------~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                            .+.+...++|.+..--..+.|.+|..+++-+...-..+++. +.-.++|.+...+.-+..-|-..|+.++.++-
T Consensus       448 n~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil  526 (960)
T KOG1992|consen  448 NELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLL  526 (960)
T ss_pred             cccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhcc
Confidence                  12456778888776555678899998888887776666654 34578888888888888889999999988764


Q ss_pred             H
Q 007863          582 Q  582 (587)
Q Consensus       582 ~  582 (587)
                      .
T Consensus       527 ~  527 (960)
T KOG1992|consen  527 T  527 (960)
T ss_pred             c
Confidence            3

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.84  E-value=4.3e-06  Score=77.73  Aligned_cols=493  Identities=11%  Similarity=0.101  Sum_probs=241.6

Q ss_pred             hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcC
Q 007863           18 LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTV   97 (587)
Q Consensus        18 l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~   97 (587)
                      +.+...++|..|+..+.+..+.+....    +..+..-.+-+.+               -.|.    +.+   +.--+.|
T Consensus         5 ~r~~~akvr~~al~~~~~~~~~~~~~~----~ygyw~~~~pd~~---------------~~g~----p~l---~~l~lkd   58 (728)
T KOG4535|consen    5 MRSYQAKVRQGALVCFLSTIKSIEKKV----LYGYWSAFIPDTP---------------ELGS----PSL---MTLTLKD   58 (728)
T ss_pred             hhhHHHHHHhhHHHHHHHHHhhhhhhh----hhceeeeecCCCC---------------CCCC----cee---eEEecCC
Confidence            456678899999988887765543222    2222221111111               1121    111   1112478


Q ss_pred             chhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcch--hhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCC
Q 007863           98 EETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTAR--VSSCGLFHVAYPSAPEALKTELRTIYRQLCQDD  175 (587)
Q Consensus        98 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r--~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~  175 (587)
                      +++.-|.-|.+.+..+....      +.++........+ +++.-  ..|+.+            +....-++..+....
T Consensus        59 ~~~~~ra~alqv~~~~l~gs------k~fls~a~~~~~~-~ftpf~v~~a~si------------~~~~r~l~~~l~~e~  119 (728)
T KOG4535|consen   59 PSPKTRACALQVLSAILEGS------KQFLSVAEDTSDH-AFTPFSVMIACSI------------RELHRCLLLALVAES  119 (728)
T ss_pred             CChhHHHHHHHHHHHHHHhh------HHHHHHHhccCCc-CCCchHHHHHHHH------------HHHHHHHHHHHHHhc
Confidence            89999998888888776431      1222222211111 22111  111111            111122223344445


Q ss_pred             CHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh----------------
Q 007863          176 MPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----------------  235 (587)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----------------  235 (587)
                      ++.+-..+.++|..++...+-.    .+.-++...+..++.+.++.||..+.-.++.+...-..                
T Consensus       120 ~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n  199 (728)
T KOG4535|consen  120 SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSN  199 (728)
T ss_pred             CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcccc
Confidence            5666777777777777655431    23344555666778888888888888877776433110                


Q ss_pred             --------hhhhhc-----------------------h-------HHH----------HHHhcCC--CchHHHHHHHHHH
Q 007863          236 --------QDCVAH-----------------------I-------LPV----------IVNFSQD--KSWRVRYMVANQL  265 (587)
Q Consensus       236 --------~~~~~~-----------------------l-------~~~----------l~~~~~d--~~~~vR~~a~~~l  265 (587)
                              .+.+..                       +       .+.          .......  ....+|..+.+.|
T Consensus       200 ~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl  279 (728)
T KOG4535|consen  200 SATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVL  279 (728)
T ss_pred             ccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHH
Confidence                    000000                       0       000          0111111  1235788888888


Q ss_pred             HHHHHHhCC-CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHh-----HHHHHh-----Hhc-C
Q 007863          266 YELCEAVGP-EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQH-----ILPCVK-----ELS-S  329 (587)
Q Consensus       266 ~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~-----~~~~l~-----~~~-~  329 (587)
                      ..++.+++- ....-.+...+...+.+..+.++..+...+..++..++.+    .+...     ++-.+.     ... .
T Consensus       280 ~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD  359 (728)
T KOG4535|consen  280 TLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD  359 (728)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence            888877652 1112245556666778889999999999999888876532    11111     111111     111 1


Q ss_pred             CCcHHHHHHHHHHHHhhhhhh--chHHHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhhhhchhh---HhhhhHHHHH
Q 007863          330 DSSQHVRSALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIV  403 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~~---~~~~~~~~l~  403 (587)
                      ........++|.++..+....  +.+.......+.+.....|.. .-|+.+|.+++....-+-+...   +.......+.
T Consensus       360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il  439 (728)
T KOG4535|consen  360 SEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAIL  439 (728)
T ss_pred             hcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHH
Confidence            223456777777777775432  111112344566666666553 3356666666555442222110   0111112222


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh
Q 007863          404 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM  483 (587)
Q Consensus       404 ~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  483 (587)
                      ..+.|+....|..+...++.+..                 .+-+..+.+|..+....|.+....         +..-. .
T Consensus       440 ~sl~d~~ln~r~KaawtlgnITd-----------------AL~~~~Ps~~s~~eR~sg~ll~~~---------~~~A~-~  492 (728)
T KOG4535|consen  440 MSLEDKSLNVRAKAAWSLGNITD-----------------ALIVNMPTPDSFQERFSGLLLLKM---------LRSAI-E  492 (728)
T ss_pred             HHhhhHhHhHHHHHHHHhhhhHH-----------------HHHcCCCCchHHHHHHHHHHHHHH---------HHHHH-H
Confidence            22233333333333333322222                 222333344444444443333210         10000 0


Q ss_pred             hcCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHH-----HHhhcCCCCccHHHHHHHHHHHHHhhh----chHHHHH
Q 007863          484 INNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPV-----VINASKDRVPNIKFNVAKVLQSLIPIV----DQSVVEK  552 (587)
Q Consensus       484 l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~-----l~~~l~d~~~~vR~~a~~~l~~l~~~~----~~~~~~~  552 (587)
                      ..-.+++||..+..+++++.+.+.+-  .....++..     +-.........||.+++.++++++++-    .......
T Consensus       493 ~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~  572 (728)
T KOG4535|consen  493 ASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWAS  572 (728)
T ss_pred             hhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchH
Confidence            11125668888888888877654311  011112111     111122346778888888888887652    2335666


Q ss_pred             hHHHHHHHhcCC-CCccHHHHHHHHHHHHHH
Q 007863          553 SIRPCLVELSED-PDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       553 ~i~~~l~~l~~d-~~~~Vr~~a~~al~~l~~  582 (587)
                      .++++|..+..| .+-.||.+|+.+|....+
T Consensus       573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  573 QAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             HHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            778888776554 566788888888765443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.83  E-value=0.00016  Score=70.84  Aligned_cols=450  Identities=14%  Similarity=0.099  Sum_probs=228.8

Q ss_pred             chHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhc--CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC
Q 007863           60 DDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE  137 (587)
Q Consensus        60 ~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~  137 (587)
                      ++.-...+..+++++    |+-+....+.+-+.+++.  +....||+.|+-++..+.+..++-.-...+..-+..+.+|+
T Consensus       124 n~~fv~LAL~~I~ni----G~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~  199 (938)
T KOG1077|consen  124 NPTFVCLALHCIANI----GSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQ  199 (938)
T ss_pred             CcHHHHHHHHHHHhh----ccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCcc
Confidence            333334444565655    655555556666666654  45689999999999999988543222234556677778888


Q ss_pred             CCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchh
Q 007863          138 WFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS  217 (587)
Q Consensus       138 ~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~  217 (587)
                      +..+-.++..++..+..+.++.+..-+.+.+..+..    .|+...........-..+.+-..-.++.++..+-..+++.
T Consensus       200 ~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~r----iv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~  275 (938)
T KOG1077|consen  200 HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSR----IVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPS  275 (938)
T ss_pred             ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHH----HHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCch
Confidence            888888888888888887776655444433333211    0000000000000011112222333455555554556677


Q ss_pred             HHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHH
Q 007863          218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEV  296 (587)
Q Consensus       218 vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~v  296 (587)
                      +|..-.+++..+.....+......+.          ...++.+..--.-+++..+..+. .....+..+-+++.+.+.++
T Consensus       276 ~r~~l~evl~~iLnk~~~~~~~k~vq----------~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~Ni  345 (938)
T KOG1077|consen  276 TRARLNEVLERILNKAQEPPKSKKVQ----------HSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNI  345 (938)
T ss_pred             HHHHHHHHHHHHHhccccCccccchH----------hhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccc
Confidence            88877777777665443200000000          00111111111111222222110 11123344455667788889


Q ss_pred             HHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcC-CCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHH
Q 007863          297 RIAAAGKVTKICRILNPELAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVR  375 (587)
Q Consensus       297 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  375 (587)
                      |.-+++.+..++..-......+.-...+...++ +.+..+|+.+++.+..++..-.    ...++.-+++.+...+..+|
T Consensus       346 RYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N----ak~IV~elLqYL~tAd~sir  421 (938)
T KOG1077|consen  346 RYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQIVAELLQYLETADYSIR  421 (938)
T ss_pred             hhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh----HHHHHHHHHHHHhhcchHHH
Confidence            999999888887752222222333455555555 8889999999999988885533    33455556666666788899


Q ss_pred             HHHHHHhHHhhhhhchhhHhhhhHHHHHHHh---cC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC--c
Q 007863          376 LNIISKLDQVNQVIGIDLLSQSLLPAIVELA---ED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK--V  449 (587)
Q Consensus       376 ~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~---~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~  449 (587)
                      ...+.-.+-+++.+..+.  ...+..+.+++   .| -+.++....++.+      .+.+....+-..-+...++.+  .
T Consensus       422 eeivlKvAILaEKyAtDy--~WyVdviLqLiriagd~vsdeVW~RvvQiV------vNnedlq~yaak~~fe~Lq~~a~h  493 (938)
T KOG1077|consen  422 EEIVLKVAILAEKYATDY--SWYVDVILQLIRIAGDYVSDEVWYRVVQIV------VNNEDLQGYAAKRLFEYLQKPACH  493 (938)
T ss_pred             HHHHHHHHHHHHHhcCCc--chhHHHHHHHHHHhcccccHHHHHHhheeE------ecchhhhHHHHHHHHHHHhhhHHH
Confidence            888888887777766542  12233332222   22 1222222222111      122222222223333333322  1


Q ss_pred             hHHHHHHHHHHHHHHHHhChhhh--hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863          450 YSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV  527 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~  527 (587)
                      ..+.+.+.-.||++...+..+..  ....+..+-+-+..-....|...+.....+....+ + ....+...+....+-.+
T Consensus       494 E~mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~nl~P-E-i~~~v~~vFq~~~n~~D  571 (938)
T KOG1077|consen  494 ENMVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCSPVTRALLLTTYIKLINLFP-E-IKSNVQKVFQLYSNLID  571 (938)
T ss_pred             HHHHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCChhHHHHHHHHHHHHHhhCh-h-hhHHHHHHHHhhcccCC
Confidence            22334444445554443333210  01122222222333345566666666666655432 1 23444444444455567


Q ss_pred             ccHHHHHHHHHHHH
Q 007863          528 PNIKFNVAKVLQSL  541 (587)
Q Consensus       528 ~~vR~~a~~~l~~l  541 (587)
                      .++...+++-|...
T Consensus       572 ~ElQqRa~EYLql~  585 (938)
T KOG1077|consen  572 VELQQRAVEYLQLS  585 (938)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888876544

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.83  E-value=1.8e-06  Score=88.68  Aligned_cols=198  Identities=18%  Similarity=0.224  Sum_probs=159.1

Q ss_pred             hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC--CCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 007863          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN  312 (587)
Q Consensus       236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      ..+.+.+-+.+...+.+++|+-|..+++.+..+...-+  ... ....+...+.....|.+..|-..++..|..++..++
T Consensus       248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr  327 (815)
T KOG1820|consen  248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR  327 (815)
T ss_pred             hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence            34455677778888899999999999999988887655  111 122344555556789999999999999999999888


Q ss_pred             HH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc
Q 007863          313 PE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (587)
Q Consensus       313 ~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  390 (587)
                      ..  .+...++|.+.+.+.+....+|.++..++..++...+    ...+.+.+..++++.+|.+|..+...+......++
T Consensus       328 ~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~  403 (815)
T KOG1820|consen  328 PLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLG  403 (815)
T ss_pred             hhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcC
Confidence            76  4566788999999999999999999999988876433    45567888899999999999999999998887776


Q ss_pred             h----hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH
Q 007863          391 I----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (587)
Q Consensus       391 ~----~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  437 (587)
                      .    ......+.|.+....+|.+..||.++.+.++.+.+.+|.+.+...+
T Consensus       404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L  454 (815)
T KOG1820|consen  404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL  454 (815)
T ss_pred             CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            2    2334678899999999999999999999999999999877665443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.78  E-value=8.9e-08  Score=70.86  Aligned_cols=88  Identities=24%  Similarity=0.359  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCC
Q 007863          491 YRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD  566 (587)
Q Consensus       491 ~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~  566 (587)
                      .|.+++.++..++..++..  .+.+.++|.++.+++|+++.||..|+++|.++.+.....  .+...+++.|.++..|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4778888888888777654  478899999999999999999999999999998887664  345788999999999999


Q ss_pred             ccHHHHHHHHHHH
Q 007863          567 VDVRFFATQALQS  579 (587)
Q Consensus       567 ~~Vr~~a~~al~~  579 (587)
                      ++||..| +.|.+
T Consensus        82 ~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   82 ENVRSAA-ELLDR   93 (97)
T ss_pred             hhHHHHH-HHHHH
Confidence            9999887 44443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.76  E-value=1.2e-06  Score=86.18  Aligned_cols=231  Identities=18%  Similarity=0.293  Sum_probs=155.2

Q ss_pred             cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc-CCC
Q 007863          332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH  410 (587)
Q Consensus       332 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-~~~  410 (587)
                      +..-+....+.|..+...++.......++|.+...+.+.  ...-...-.+-.|.+.....++...++|.|...++ ..+
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~  363 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP  363 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence            344556666677777777777777777777777666443  11112222223333333444555677777777766 456


Q ss_pred             cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh-hcCCcc
Q 007863          411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHY  489 (587)
Q Consensus       411 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~  489 (587)
                      .+++...++.+..+.+....+.+.++++|++...++|.+..+.+.+++.+..+.+.+...+..+.++|.+.++ +...+.
T Consensus       364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~  443 (700)
T KOG2137|consen  364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL  443 (700)
T ss_pred             ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence            6777778888888888888888888888888888888888888888888888888877776778888888776 455667


Q ss_pred             HHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc--hHHHHHhHHHHHHHhcCCC
Q 007863          490 LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDP  565 (587)
Q Consensus       490 ~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~l~~d~  565 (587)
                      .++..++.|++.+.+.+...-..+.++|.+.. .+..++.+-...+.+...+.-...  .+...+.++|.+..+..-+
T Consensus       444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence            78888888888888766655455555555444 444566777666666665543322  2455667777777764433

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.75  E-value=0.00015  Score=71.30  Aligned_cols=202  Identities=13%  Similarity=0.154  Sum_probs=120.4

Q ss_pred             HHHHHHHHHhCCCCcccc---hHHHHHHh-cCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhc-CCCcHHHHH
Q 007863          263 NQLYELCEAVGPEPTRSD---VVPAYVRL-LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS-SDSSQHVRS  337 (587)
Q Consensus       263 ~~l~~l~~~~~~~~~~~~---l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~-~d~~~~vr~  337 (587)
                      -.+..+...+.++...+.   ++..+..+ .+..++..|..+++.++.+.+.+..+...+.++..+.... .......|.
T Consensus       169 ~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~  248 (415)
T PF12460_consen  169 ILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRP  248 (415)
T ss_pred             HHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhH
Confidence            334444444544433222   44444443 3444589999999999999998766654455566555444 445556666


Q ss_pred             HHHHHHHhhhhhh--chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc---------------hhhHhhhhHH
Q 007863          338 ALATVIMGMAPIL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---------------IDLLSQSLLP  400 (587)
Q Consensus       338 ~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---------------~~~~~~~~~~  400 (587)
                      .+...+.-+++..  -.......++..+..++.|  +++...++.+++-+.....               .+.+-..++|
T Consensus       249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p  326 (415)
T PF12460_consen  249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP  326 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence            7776666665543  1222334566777778877  6788888888888775521               1122234555


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863          401 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  466 (587)
Q Consensus       401 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  466 (587)
                      .+.+..++.+...|...+.++..+.+..+.+.+.   +.++|++++.+.-++.+++..++.++..+...
T Consensus       327 ~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~  395 (415)
T PF12460_consen  327 KLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE  395 (415)
T ss_pred             HHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence            5555555554446666666666666666554443   34566666666666666666666666666553

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.73  E-value=0.00032  Score=71.28  Aligned_cols=183  Identities=16%  Similarity=0.117  Sum_probs=119.5

Q ss_pred             hhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC------------
Q 007863           88 LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS------------  155 (587)
Q Consensus        88 ~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~------------  155 (587)
                      ..++-.-+-|..+.||..|+..+..+.+..+.-. ...++..+.+...|+.+.++.++..++..-..-            
T Consensus       474 ~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~~-~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~  552 (1529)
T KOG0413|consen  474 YNIVYMRCLDKAAAVRLHALNSLTKILQLQSHRE-AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL  552 (1529)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence            3445555678899999999999998877654321 223444444444444444444433322111100            


Q ss_pred             ----------------CCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhH
Q 007863          156 ----------------APEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSV  218 (587)
Q Consensus       156 ----------------~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~v  218 (587)
                                      +.....+.++.++..... |+-..||+.+++.+.....+...+...+..+-++..++.|+-..|
T Consensus       553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv  632 (1529)
T KOG0413|consen  553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV  632 (1529)
T ss_pred             cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence                            000123445555555544 666789999999999998888887778888999999999999999


Q ss_pred             HHHHHHHHHHHhcccCh-hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Q 007863          219 RLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA  271 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~  271 (587)
                      |..++..|+.+.-.-+. -.....-+-.+...+.|....|...|...+..+...
T Consensus       633 rk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p  686 (1529)
T KOG0413|consen  633 RKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP  686 (1529)
T ss_pred             HHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence            99999888887654332 122233346667778898889999998877776543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.72  E-value=2.5e-07  Score=68.52  Aligned_cols=83  Identities=16%  Similarity=0.187  Sum_probs=66.5

Q ss_pred             HHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHHHhcCCCC
Q 007863          296 VRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFLSLLKDEF  371 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~  371 (587)
                      .|++++-+|..++..++..  .+.+.++|.+...++|++++||..+++++..+++..+.+.  +...+++.+.+++.|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4778888888888777765  5668888888899999999999999999999887776443  35667788888888988


Q ss_pred             hHHHHHH
Q 007863          372 PDVRLNI  378 (587)
Q Consensus       372 ~~vr~~a  378 (587)
                      +.||.++
T Consensus        82 ~~Vr~~a   88 (97)
T PF12755_consen   82 ENVRSAA   88 (97)
T ss_pred             hhHHHHH
Confidence            8888776

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.67  E-value=0.0001  Score=75.40  Aligned_cols=368  Identities=15%  Similarity=0.178  Sum_probs=214.6

Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccch
Q 007863          206 IFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDV  281 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l  281 (587)
                      .+..++...+.-.| .+...|..+++...-  ......+++.+.+++...+..+...+...|.+++-.-..  ......+
T Consensus       254 k~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~gi  332 (708)
T PF05804_consen  254 KLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGI  332 (708)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence            33344444333333 566677777765432  223466888899999988999999999988887643211  2224468


Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHH
Q 007863          282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIE  357 (587)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~  357 (587)
                      ++.+.+++..++..++..+++.|.+++-.-..  .-....++|.+..++.+++  .|..+...+..++..-.  ......
T Consensus       333 V~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~T  410 (708)
T PF05804_consen  333 VEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYT  410 (708)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhc
Confidence            99999999999899999999999988653221  2233457888999998765  44556666666653211  111223


Q ss_pred             hHHHHHHHhc-CCCChHHHHHHHHHhHHhhhhhchh-hH-hhhhHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhCh--h
Q 007863          358 QLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGID-LL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--G  431 (587)
Q Consensus       358 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~-~~-~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~--~  431 (587)
                      ..+|.+.+++ ..+++.+...++..+-.++..-..- .+ ....++.+.+. ++..+    ...++.+..++.+-|+  .
T Consensus       411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~  486 (708)
T PF05804_consen  411 DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKE  486 (708)
T ss_pred             chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHH
Confidence            4567776654 3345556554444444333221110 00 01223333322 22222    1233444444444322  1


Q ss_pred             hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh--Chhh--h--hhchHHHHHhhhcCC--ccHHHHHHHHHHHHhh
Q 007863          432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDW--A--MQHIVPQVLEMINNP--HYLYRMTILQAISLLA  503 (587)
Q Consensus       432 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~--~--~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~  503 (587)
                      .|.+++.+++-......+.+   ..++++|.+...-  +.++  +  ...++|.+.+.+..+  ...+...++..+|.++
T Consensus       487 ~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  487 LFVDFIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             HHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence            23344444433333333444   4555555555422  2222  2  247899999887654  3356667777777776


Q ss_pred             cccChHH--HHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchH-H--HHHhHHHHHHHhcCCCCccHHHHHHHH
Q 007863          504 PVMGSEI--TCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS-V--VEKSIRPCLVELSEDPDVDVRFFATQA  576 (587)
Q Consensus       504 ~~~~~~~--~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~-~--~~~~i~~~l~~l~~d~~~~Vr~~a~~a  576 (587)
                      ..-....  ....+++.+..++++.  +.+.-...+.++.++..+-... .  ....+..-|..++.|+++.||..+-.+
T Consensus       564 ~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~  643 (708)
T PF05804_consen  564 SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNA  643 (708)
T ss_pred             CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHH
Confidence            5322222  2456788888887664  4666667777777776552221 1  124577788889999999999999999


Q ss_pred             HHHHHHH
Q 007863          577 LQSKDQV  583 (587)
Q Consensus       577 l~~l~~~  583 (587)
                      |+-+++.
T Consensus       644 Ldii~e~  650 (708)
T PF05804_consen  644 LDIIAEY  650 (708)
T ss_pred             HHHHHHh
Confidence            9988875

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.67  E-value=4e-05  Score=78.20  Aligned_cols=368  Identities=15%  Similarity=0.154  Sum_probs=217.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhc
Q 007863          166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAA--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAH  241 (587)
Q Consensus       166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~  241 (587)
                      ..+..++...+.-.| .+...|.+++.....+  -....+++.+.++++.++..+...++..|.+++-.-..  ......
T Consensus       253 kk~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g  331 (708)
T PF05804_consen  253 KKLQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG  331 (708)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            344444455544555 4556677776654321  23345778888888888888888888998887644322  334566


Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC--CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHH
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAI  317 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~  317 (587)
                      +++.+.+++..++..++..+++.|.+++..-.  .......++|.+..+++|++  .+..++..|..++..-...  ...
T Consensus       332 iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~  409 (708)
T PF05804_consen  332 IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAY  409 (708)
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhh
Confidence            89999999999999999999999998864321  12233468899999998764  5566777777776521111  112


Q ss_pred             HhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHH-HhcCCCChHHHHHHHHHhHHhhhhhchh-
Q 007863          318 QHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGID-  392 (587)
Q Consensus       318 ~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~-  392 (587)
                      ...+|.+.+++ ..++..+...++..+..++..-....  .....++.+. ..++..++-    .+..+..++.+-|+. 
T Consensus       410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k  485 (708)
T PF05804_consen  410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLK  485 (708)
T ss_pred             cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHH
Confidence            34567776654 44566666655555555543321111  1112233333 333333322    223444444443322 


Q ss_pred             -hHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhh----ChhhHH--HHHHHHHHHHcCCC--chHHHHHHHHHHHH
Q 007863          393 -LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQL----GVGFFD--DKLGALCMQWLKDK--VYSIRDAAANNVKR  462 (587)
Q Consensus       393 -~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~----~~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~  462 (587)
                       .+.+ ++..+...+.. +++.   ..++++|.++..-    +...+.  -.++|.+.+.+...  ..++...++..+|.
T Consensus       486 ~~f~~-~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gt  561 (708)
T PF05804_consen  486 ELFVD-FIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGT  561 (708)
T ss_pred             HHHHH-HHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHH
Confidence             1222 33333333433 3444   4555566555532    122222  25788888887543  34688888888888


Q ss_pred             HHHHhChh--hhhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccC-hHHH--HHhHHHHHHhhcCCCCccHHHHHH
Q 007863          463 LAEEFGPD--WAMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMG-SEIT--CSQLLPVVINASKDRVPNIKFNVA  535 (587)
Q Consensus       463 l~~~~~~~--~~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~-~~~~--~~~~l~~l~~~l~d~~~~vR~~a~  535 (587)
                      ++..-...  .....+++.+.++++..  +.+.-...+.++.++..+-. .+.+  ...+...++.+++|+++.||..+-
T Consensus       562 la~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d  641 (708)
T PF05804_consen  562 LASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCD  641 (708)
T ss_pred             HHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHH
Confidence            77532111  12467788888877554  35555566677777765421 1212  245777899999999999999999


Q ss_pred             HHHHHHHhh
Q 007863          536 KVLQSLIPI  544 (587)
Q Consensus       536 ~~l~~l~~~  544 (587)
                      .+|..+...
T Consensus       642 ~~Ldii~e~  650 (708)
T PF05804_consen  642 NALDIIAEY  650 (708)
T ss_pred             HHHHHHHHh
Confidence            999877654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.66  E-value=0.00025  Score=69.19  Aligned_cols=404  Identities=14%  Similarity=0.081  Sum_probs=216.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHhcccChh-----hhhhchH
Q 007863          173 QDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEPQ-----DCVAHIL  243 (587)
Q Consensus       173 ~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~~-----~~~~~l~  243 (587)
                      +++.+......+..++.++..-..   +......++.+.+++.+.+ ..++....+++..+.+..+..     .....++
T Consensus        63 e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi  142 (678)
T KOG1293|consen   63 EDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSII  142 (678)
T ss_pred             cCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence            344556666666666666543322   2233345666777887777 789999999999988776432     1233455


Q ss_pred             HHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCC-----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---
Q 007863          244 PVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---  314 (587)
Q Consensus       244 ~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---  314 (587)
                      +.+..+.+ ......+..+..    ++...+...     ....+...+.-++.-.+..+|.+|+.++.+....+-.+   
T Consensus       143 ~~~s~l~s~~lk~~~~l~~~~----~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~  218 (678)
T KOG1293|consen  143 VKFSLLYSIELKYISRLDVSR----AAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLG  218 (678)
T ss_pred             HHHHHHHhhhhhhhhhhhhhh----hccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchh
Confidence            55555554 221222222111    111111110     01123333333333345678999999888432222111   


Q ss_pred             --H-----HHHhHHH--HHhHhcCCCcHHHHHHHHHHHHhhhhhh-chH------HHH----HhHHHH-HHHhcCCCChH
Q 007863          315 --L-----AIQHILP--CVKELSSDSSQHVRSALATVIMGMAPIL-GKD------ATI----EQLLPI-FLSLLKDEFPD  373 (587)
Q Consensus       315 --~-----~~~~~~~--~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~------~~~----~~l~~~-l~~~l~d~~~~  373 (587)
                        .     ..+.+.+  .+.++.+|++...|...+.++..+...- ..+      .+.    +.+..+ ...+..|+...
T Consensus       219 sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s  298 (678)
T KOG1293|consen  219 SMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLS  298 (678)
T ss_pred             HHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCcee
Confidence              1     1122333  3456778888888888888777665332 100      000    011111 12223343211


Q ss_pred             HHHHHHH---HhHHhhhhhchhhHhhhhHHHHHHHh------cCCCcHHHHHHHHHHH---HHHHhhCh---hhHHH-HH
Q 007863          374 VRLNIIS---KLDQVNQVIGIDLLSQSLLPAIVELA------EDRHWRVRLAIIEYIP---LLASQLGV---GFFDD-KL  437 (587)
Q Consensus       374 vr~~a~~---~l~~i~~~~~~~~~~~~~~~~l~~~~------~~~~~~vr~~~~~~l~---~l~~~~~~---~~~~~-~l  437 (587)
                      .-..++.   .+..+.+.+....+.....+.+.+++      +....+.|.-++....   .++...+.   ..+.. ..
T Consensus       299 ~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t  378 (678)
T KOG1293|consen  299 TLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTT  378 (678)
T ss_pred             ehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHH
Confidence            1111111   12223333333333233334333332      2344555554433221   12222111   11111 11


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHh---ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHH
Q 007863          438 GALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EIT  511 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~  511 (587)
                      ...+.....-.+..++.+|+.++..+.+..   ....-...+...+.+++.||+..+..+++.++.++.-.+++   ...
T Consensus       379 ~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl  458 (678)
T KOG1293|consen  379 ESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL  458 (678)
T ss_pred             HHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH
Confidence            222222223456778999999888776533   22222456777788888999999999999999999876664   234


Q ss_pred             HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863          512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l  580 (587)
                      ....+..+.++++++.+++|..+.++|..+.-..+..    ....--...+..+.+|++|.|...+.+.+-.+
T Consensus       459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl  531 (678)
T KOG1293|consen  459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNL  531 (678)
T ss_pred             HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            6678889999999999999999999998886544332    22222345566689999999998887776554

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.66  E-value=0.00076  Score=68.38  Aligned_cols=198  Identities=15%  Similarity=0.207  Sum_probs=128.8

Q ss_pred             HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh---HHHHHHH
Q 007863          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGA  439 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~  439 (587)
                      +..+..|..+.+|..++.++...++.---..+.+.++..+..+..+.+..+-...++.+..+++. .+++   ....+.|
T Consensus       496 v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P  574 (1005)
T KOG2274|consen  496 VNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKL-DPEFAASMESKICP  574 (1005)
T ss_pred             HHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhH
Confidence            34455677788999999998888743222334456667777777788888888889999888764 3322   1234566


Q ss_pred             HHHHHc--CCCchHHHHHHHHHHHHHHHH---hChhhhhhchHHHHHhhhcCCc----cHHHHHHHHHHHHhhcccCh--
Q 007863          440 LCMQWL--KDKVYSIRDAAANNVKRLAEE---FGPDWAMQHIVPQVLEMINNPH----YLYRMTILQAISLLAPVMGS--  508 (587)
Q Consensus       440 ~l~~~l--~d~~~~vr~~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~l~~~~----~~~r~~a~~~l~~l~~~~~~--  508 (587)
                      .++..+  ..+++.|-..+-.++..++..   .|+  ..+..+|.+.+.+.-++    ...-..++..+..+.+.-++  
T Consensus       575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL  652 (1005)
T KOG2274|consen  575 LTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL  652 (1005)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence            555443  234457777777777777663   333  35789999999877665    45677788888877775443  


Q ss_pred             -HHHHHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhh--------hchH-HHHHhHHHHHHHhcC
Q 007863          509 -EITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPI--------VDQS-VVEKSIRPCLVELSE  563 (587)
Q Consensus       509 -~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~--------~~~~-~~~~~i~~~l~~l~~  563 (587)
                       ..+..+.+|.+.++. +..+...-.++-++|..++..        .+.+ ....+++.++.+|++
T Consensus       653 ~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd  718 (1005)
T KOG2274|consen  653 PNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD  718 (1005)
T ss_pred             cHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence             235677888887763 344555566666777665544        1111 113477888888764

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.63  E-value=1.6e-07  Score=69.96  Aligned_cols=86  Identities=28%  Similarity=0.419  Sum_probs=63.9

Q ss_pred             HHHHHhhh-cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHH
Q 007863          477 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR  555 (587)
Q Consensus       477 ~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~  555 (587)
                      +|.+.+.+ +++++.+|..++.+++.+..        +..+|.+..+++|+++.||..++.+|+.+..        ...+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            45666666 78888888888888885432        4678888888888888999999998887742        3567


Q ss_pred             HHHHHhcCC-CCccHHHHHHHHHH
Q 007863          556 PCLVELSED-PDVDVRFFATQALQ  578 (587)
Q Consensus       556 ~~l~~l~~d-~~~~Vr~~a~~al~  578 (587)
                      +.|.+++.| ++..||..|.++|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            777775544 55667888888875

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.63  E-value=9.1e-05  Score=69.68  Aligned_cols=258  Identities=17%  Similarity=0.119  Sum_probs=158.5

Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHHHHH-HhcCCCChHHHHHHHHHhHHhhhhhchhhH
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA--TIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~  394 (587)
                      ..++-.+..-..|++..+|..++..++..+...+.+.  +...++..+. .+..+.+.+|...+..+|..+.+.......
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            4455556666789999999999999999988765332  3344555554 445556799999999999999888776655


Q ss_pred             hhhhHHH---HHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHH---HHHHcCCCchHHHHHHHHHHHHHHH
Q 007863          395 SQSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGAL---CMQWLKDKVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       395 ~~~~~~~---l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                      ...+++.   +..+..+.+.++|.++...++.+....|.   ++|.+.+..-   +.-.++|+++.|-. |+......  
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~--  413 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT--  413 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh--
Confidence            5555444   45667899999999999999999887653   3343333322   22346888887644 33333332  


Q ss_pred             HhChhhhhhchHHHHHhhhcCCcc-HHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863          466 EFGPDWAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       466 ~~~~~~~~~~~~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                       +++....+..-..+-+.+ |.+. ..+.-.-.++.++.+... + ..-.......-+++...+.||..+...-+.....
T Consensus       414 -c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~-d-~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~  489 (533)
T KOG2032|consen  414 -CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHP-D-ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS  489 (533)
T ss_pred             -cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCH-H-HHHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence             222222222222111112 2211 111111112222222111 1 1222333333445666779999988877777665


Q ss_pred             hchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          545 VDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       545 ~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ..+.    .....+...+..+..|+-++|+..|.+|++.+..
T Consensus       490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            5443    3345567778889999999999999999998753

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=9.3e-05  Score=65.70  Aligned_cols=320  Identities=13%  Similarity=0.126  Sum_probs=185.2

Q ss_pred             HHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC-------cccchHHHHHHhcCCChH
Q 007863          222 AVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRSDVVPAYVRLLRDNEA  294 (587)
Q Consensus       222 a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~  294 (587)
                      ++.+|..+.+........+++.|.+...+..++..|+..+++.++.+........       ....+++.+..++..++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            6677777776655555667777888887777888888888888888776654321       134578888888889999


Q ss_pred             HHHHHHHHhHHHHHHhhCHH--HHHHhHHHH--HhHhcCCCcHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhc
Q 007863          295 EVRIAAAGKVTKICRILNPE--LAIQHILPC--VKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLL  367 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~--l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l  367 (587)
                      +|.++|.+.+..++..-..-  .+-..++..  +.++....+.-+|......+..+....+   .+....-++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            99999999999887631110  000111111  1111222344556556666555543322   2222344556665555


Q ss_pred             CC-CChHHHHHHHHHhHHhhhhhchhhH--hhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHHH----HH-
Q 007863          368 KD-EFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDD----KL-  437 (587)
Q Consensus       368 ~d-~~~~vr~~a~~~l~~i~~~~~~~~~--~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~----~l-  437 (587)
                      +. .+.-|+..++....++...-...++  .+.++..+.+.+.  |.++--+..   .+..+.+.+|.+.+.+    .+ 
T Consensus       223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr---almgfgkffgkeaimdvseeaic  299 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR---ALMGFGKFFGKEAIMDVSEEAIC  299 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH---HHHHHHHHhcchHHhhcCHHHHH
Confidence            54 5667787777777776654332222  2457777777663  344433222   2333344444332221    11 


Q ss_pred             ------HHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhc---hHHHHHhhhcCCc-cHHHHHHHHHHHHhhccc
Q 007863          438 ------GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQH---IVPQVLEMINNPH-YLYRMTILQAISLLAPVM  506 (587)
Q Consensus       438 ------~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~---~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~  506 (587)
                            +.-.+..+...++...++|+.++|.+.+..... .....   -...+.....|.+ .....+++.++.+++...
T Consensus       300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel  379 (524)
T KOG4413|consen  300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL  379 (524)
T ss_pred             HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence                  222334456678888999999999988754332 22222   2223333334443 335677888888887532


Q ss_pred             C--hHH---------HHH------------hHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863          507 G--SEI---------TCS------------QLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       507 ~--~~~---------~~~------------~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                      .  ++.         ...            .-+..+...++.|.+++|-++.+++..+...
T Consensus       380 rlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq  440 (524)
T KOG4413|consen  380 RLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ  440 (524)
T ss_pred             cCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC
Confidence            1  110         011            1123455667888999999999999988654

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.61  E-value=5.3e-06  Score=81.73  Aligned_cols=233  Identities=14%  Similarity=0.222  Sum_probs=176.1

Q ss_pred             ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC-CC
Q 007863          292 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-DE  370 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~  370 (587)
                      .++.-+..-.+.|..+...++...+...++|.+...+.+.  ...-...-.+..|++..+..++...++|.+...++ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~--~~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNT--KMVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccc--cccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            4455666777788888888888877888999988776432  22222233344555555666777888888888887 44


Q ss_pred             ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-cCCCc
Q 007863          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKV  449 (587)
Q Consensus       371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~  449 (587)
                      ..++....++.+..+.+....+++.+.++|.|...+++.+..++..++..+..+.+.+....+.+.++|.+..+ +...+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            56788888899999999999999999999999999999999999999999999999999888888999988875 56778


Q ss_pred             hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCCCC
Q 007863          450 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDRV  527 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d~~  527 (587)
                      ..|+..++.|++.+++.+..-...+.+.|.+... +.+++.+....+.....+.-  ..|.+...+.++|.+..+...+.
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            8999999999999998776655567677665554 33445555555555555443  33345567889998888776654

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.59  E-value=0.00099  Score=67.87  Aligned_cols=188  Identities=16%  Similarity=0.044  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-----
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-----  235 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----  235 (587)
                      ...+.+++...|-|..+.||..++..+..+.+..+. .....|+.....-..|+...++.++..++..-..-.+.     
T Consensus       470 vg~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~-~~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt  548 (1529)
T KOG0413|consen  470 VGVLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSH-REAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTT  548 (1529)
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc-cchHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccch
Confidence            345677888889999999999999999988876544 22223333333334444456666555544332111110     


Q ss_pred             ----------------------hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC
Q 007863          236 ----------------------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN  292 (587)
Q Consensus       236 ----------------------~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  292 (587)
                                            ..+...++..+.+.++ |....||..+++.+..+..+.......+..+.++..++.|+
T Consensus       549 ~~l~~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~  628 (1529)
T KOG0413|consen  549 DLLLDEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDR  628 (1529)
T ss_pred             hhcCcchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCc
Confidence                                  0112335566666665 77778999999988888777665555566788899999999


Q ss_pred             hHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863          293 EAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  349 (587)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      -..||+.++..|+.+...-+.- .....-+-.+...++|.+..|...+...+..+..-
T Consensus       629 ~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l~p  686 (1529)
T KOG0413|consen  629 MVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVLTP  686 (1529)
T ss_pred             chHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence            9999999999998886542221 22334445667788899889999998877776543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.56  E-value=0.0018  Score=67.83  Aligned_cols=143  Identities=14%  Similarity=0.157  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccCh
Q 007863          434 DDKLGALCMQWLK----DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGS  508 (587)
Q Consensus       434 ~~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~  508 (587)
                      ...+.|++....+    -.+++++.+|--+++++.- +..+ |.+.-+|.++..+. .|++.+|..++-+++.++-.++.
T Consensus       917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            3456777777663    3468999999999999875 3334 45667888888776 88999999999999998865543


Q ss_pred             HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          509 EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       509 ~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                        ..+..-+.+...+.|+++.||.+|+..+..+.-.=  -.-....++.+..++.|+++.||..|..-+..+++
T Consensus       995 --lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd--miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 --LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND--MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             --ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh--hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence              35667778889999999999999999999886531  11224567778889999999999999976666654

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=0.00022  Score=71.51  Aligned_cols=399  Identities=15%  Similarity=0.132  Sum_probs=228.1

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccChh-
Q 007863          163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQ-  236 (587)
Q Consensus       163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~-  236 (587)
                      .+-+++..+-...++..+..++.-|+.+...-.++    -..+.++|.+..+++++ +.++...|+++|..+.+.+++. 
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            34445555555557777766666666655433332    23567899999999988 5789999999999999999872 


Q ss_pred             --hhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863          237 --DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  313 (587)
Q Consensus       237 --~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        -.....+|.+..-+. =.--.|-+.++++|..|...-+.......-+..+..+++--...++..|+..-.++|+.+.+
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s  327 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS  327 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              123346776655333 33445777888888888765444333333445555555555568888999999999998887


Q ss_pred             H--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HH----HHhHHHHHHHhcCCC----ChHHHHHHHHH
Q 007863          314 E--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--AT----IEQLLPIFLSLLKDE----FPDVRLNIISK  381 (587)
Q Consensus       314 ~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~----~~~l~~~l~~~l~d~----~~~vr~~a~~~  381 (587)
                      +  .+.-+.+|.+..+++..+..+-..++-++..++..+.+.  ..    ...++.-..+++.-.    +..+....+..
T Consensus       328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrm  407 (1051)
T KOG0168|consen  328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRM  407 (1051)
T ss_pred             ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHH
Confidence            6  345678899999999888888888998998888777422  11    122333344444322    22334444444


Q ss_pred             hHHhhhhhc---hhhHhhhhHHHHHHHhcC----CC-------cHHHHHHHHHHHHHHHhhC---hhh-H---HHH----
Q 007863          382 LDQVNQVIG---IDLLSQSLLPAIVELAED----RH-------WRVRLAIIEYIPLLASQLG---VGF-F---DDK----  436 (587)
Q Consensus       382 l~~i~~~~~---~~~~~~~~~~~l~~~~~~----~~-------~~vr~~~~~~l~~l~~~~~---~~~-~---~~~----  436 (587)
                      +..++....   ...+...+...+..++..    .+       .+.-....+....+...+.   .+. |   ...    
T Consensus       408 ls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~  487 (1051)
T KOG0168|consen  408 LSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEI  487 (1051)
T ss_pred             HHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhccc
Confidence            444443211   111112233333333311    11       0111122222222222211   110 0   000    


Q ss_pred             -----------------------H-HHHHHHHcCCCc----------hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh
Q 007863          437 -----------------------L-GALCMQWLKDKV----------YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE  482 (587)
Q Consensus       437 -----------------------l-~~~l~~~l~d~~----------~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  482 (587)
                                             + ..++-+.=.|+.          ..-|+..+.-=..+...     |...++|.+.+
T Consensus       488 ~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~-----F~~~llpVLve  562 (1051)
T KOG0168|consen  488 VNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQS-----FGKDLLPVLVE  562 (1051)
T ss_pred             ccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHH-----HHHHHHHHHHH
Confidence                                   0 000000000000          01111111111122222     34668999988


Q ss_pred             hhcCC-ccHHHHHHHHHHHHhhcccChHHHH-----HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHHHH
Q 007863          483 MINNP-HYLYRMTILQAISLLAPVMGSEITC-----SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEK  552 (587)
Q Consensus       483 ~l~~~-~~~~r~~a~~~l~~l~~~~~~~~~~-----~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~  552 (587)
                      .+.+. +..||..++.+|..+......+.+.     ..+-..+..++...+..|-..|++....+.++++.    ....+
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~RE  642 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRRE  642 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhh
Confidence            87654 7889999999999998766655321     22334555677777888888888888888877654    35556


Q ss_pred             hHHHHHHHhcCCCC
Q 007863          553 SIRPCLVELSEDPD  566 (587)
Q Consensus       553 ~i~~~l~~l~~d~~  566 (587)
                      .++..+..|..|.+
T Consensus       643 GV~~~v~~L~~~~~  656 (1051)
T KOG0168|consen  643 GVFHAVKQLSVDSN  656 (1051)
T ss_pred             hHHHHHHHHhccCC
Confidence            78888888776543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.54  E-value=1.3e-05  Score=68.30  Aligned_cols=106  Identities=21%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             hhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHH
Q 007863          216 DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAE  295 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  295 (587)
                      +.||..++.+++.++...+.  ..+...|.+...++|+++.||+.|+.++..+... +--.....++..+..++.|++++
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~~   78 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENPE   78 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCHH
Confidence            56777777777777665543  3455666677777777777777777777776542 11111233445666667777777


Q ss_pred             HHHHHHHhHHHHHHhhCHHHHHHhHHHHH
Q 007863          296 VRIAAAGKVTKICRILNPELAIQHILPCV  324 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~~~~~~~~~~~~~l  324 (587)
                      ||..|...+..+....++..+.+.+.+.+
T Consensus        79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i  107 (178)
T PF12717_consen   79 IRSLARSFFSELLKKRNPNIIYNNFPELI  107 (178)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            77777777777777654544433333333

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=7e-06  Score=80.41  Aligned_cols=129  Identities=17%  Similarity=0.140  Sum_probs=59.7

Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHh-cCCCchHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP  283 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  283 (587)
                      +++.+++.|++|..|...+..+..-...-+    ....+..++.. .+|.+..||++|..+||-++..      .++.+|
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg----nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~------dp~~~~  591 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG----NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR------DPEQLP  591 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC----chhhHHHhhcccccccchHHHHHHHHHheeeEec------Chhhch
Confidence            444455555555555555444332111111    11222222222 4555555666665555544321      122334


Q ss_pred             HHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhh
Q 007863          284 AYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA  347 (587)
Q Consensus       284 ~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~  347 (587)
                      ..++++.+ -++.||.+++-+|+-.|...|..    ..+..+..+..|+...||..|+-+++.+.
T Consensus       592 s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm  652 (929)
T KOG2062|consen  592 STVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIM  652 (929)
T ss_pred             HHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHH
Confidence            44444433 34556666666665555544442    22344444455565666666655555443

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.53  E-value=4.8e-07  Score=67.33  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=10.7

Q ss_pred             HHHHhHhcCCCcHHHHHHHHHHHHhh
Q 007863          321 LPCVKELSSDSSQHVRSALATVIMGM  346 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l  346 (587)
                      +|.+..+++|+++.||..++.+++.+
T Consensus        33 ~~~L~~~l~d~~~~vr~~a~~aL~~i   58 (88)
T PF13646_consen   33 IPALIELLKDEDPMVRRAAARALGRI   58 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            33333333444444444444444433

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.49  E-value=2.6e-05  Score=69.66  Aligned_cols=188  Identities=13%  Similarity=0.084  Sum_probs=128.0

Q ss_pred             HHHhHhcC-CCcHHHHHHHHHHHHhhhhhhc-hHHHHH-hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863          322 PCVKELSS-DSSQHVRSALATVIMGMAPILG-KDATIE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       322 ~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~  398 (587)
                      ..+..+++ ..++.++..+..+++..+..-. .+...+ ..++.+..++.++++.+|..|+.++..++.........+..
T Consensus        15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~   94 (254)
T PF04826_consen   15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY   94 (254)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            33444443 4567888888888877654322 222222 46788999999999999999999999888776555545666


Q ss_pred             HHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh--Chhhhhh
Q 007863          399 LPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF--GPDWAMQ  474 (587)
Q Consensus       399 ~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~~~~~  474 (587)
                      ++.+.+...+  -+..++.++++.+..+.-.-.........+|.++.++...+..+|..+++.|..+...-  ..+.+..
T Consensus        95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~  174 (254)
T PF04826_consen   95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA  174 (254)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc
Confidence            7777665433  36688888888888775332222233345677788888889999999999999887632  2233445


Q ss_pred             chHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChH
Q 007863          475 HIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       475 ~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      +..+.+..++... +..+-..++..+.++....+++
T Consensus       175 q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~  210 (254)
T PF04826_consen  175 QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE  210 (254)
T ss_pred             cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence            6666777766554 5667778888888887766544

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.49  E-value=0.00042  Score=68.28  Aligned_cols=290  Identities=14%  Similarity=0.132  Sum_probs=155.0

Q ss_pred             HHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH
Q 007863          208 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR  287 (587)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  287 (587)
                      ....+ .+..++..|...+..+.+.++.  ..+..+..+..+|.|.+..||..|++.|..+|..-  ......+..+|.+
T Consensus        29 l~~~k-g~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~Q  103 (556)
T PF05918_consen   29 LDGVK-GSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQ  103 (556)
T ss_dssp             HHGGG-S-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHH
T ss_pred             HHHcc-CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHH
Confidence            33444 3577899999999999998876  46778899999999999999999999999998752  2224568899999


Q ss_pred             hcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc------hHHHHHhHHH
Q 007863          288 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG------KDATIEQLLP  361 (587)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~------~~~~~~~l~~  361 (587)
                      ++..+++..+..+-++|..+.+. .+...+..++..+..- ...+..+|..++..+..-...++      .++..+.+..
T Consensus       104 lL~tdd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~  181 (556)
T PF05918_consen  104 LLQTDDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVD  181 (556)
T ss_dssp             HTT---HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHH
Confidence            99988888888888888888775 2322223333333311 23467899999888854333222      2445567788


Q ss_pred             HHHHhcCCCChHHHHHHHHHhHHhhhh--hchhhHhhhhHHHHHHHhc-C-----CCcHHHHHHHHHHHHHHHhh----C
Q 007863          362 IFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAE-D-----RHWRVRLAIIEYIPLLASQL----G  429 (587)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~~~~~l~~~~~-~-----~~~~vr~~~~~~l~~l~~~~----~  429 (587)
                      .+.+.|.|-..+==......|..+--.  .....-.+.+++.+.+... |     .+...-...+.++..-...+    .
T Consensus       182 ~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~  261 (556)
T PF05918_consen  182 EIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVS  261 (556)
T ss_dssp             HHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB-
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCC
Confidence            888899884332111222222222110  0111223557777765442 1     12222222333332222222    2


Q ss_pred             hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc----C--C----ccHHHHHHHHHH
Q 007863          430 VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----N--P----HYLYRMTILQAI  499 (587)
Q Consensus       430 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~----~--~----~~~~r~~a~~~l  499 (587)
                      ...|..++...++..+.+-....|...++.++.++...+... ...++|.+.+.+.    .  .    +...-++.+.++
T Consensus       262 Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~af  340 (556)
T PF05918_consen  262 SSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAF  340 (556)
T ss_dssp             -HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHH
Confidence            222333443333334455556778889999999998877543 3445555555432    1  1    233445555555


Q ss_pred             HHhhcc
Q 007863          500 SLLAPV  505 (587)
Q Consensus       500 ~~l~~~  505 (587)
                      ..++..
T Consensus       341 h~La~k  346 (556)
T PF05918_consen  341 HQLARK  346 (556)
T ss_dssp             HHHHTT
T ss_pred             HHHhhh
Confidence            555543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.49  E-value=1.5e-05  Score=71.22  Aligned_cols=213  Identities=13%  Similarity=0.108  Sum_probs=146.8

Q ss_pred             HHHHHhcC-CCChHHHHHHHHHhHHhhhhhchhhH-h-hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH
Q 007863          361 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLL-S-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (587)
Q Consensus       361 ~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~~~-~-~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  437 (587)
                      ..+..+|+ ..+|.++..+..+++..+..-....+ . -..++.+..++.++++.+|..++.++..++.........+..
T Consensus        15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~   94 (254)
T PF04826_consen   15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY   94 (254)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence            44555555 45799999999999987654333222 1 256899999999999999999999988776554332222223


Q ss_pred             HHH-HHHHcCC-CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc--ChHHHHH
Q 007863          438 GAL-CMQWLKD-KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM--GSEITCS  513 (587)
Q Consensus       438 ~~~-l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~  513 (587)
                      ++. +.....+ .+.+++.++++.|..+.-...........+|.++.++...+..+|..+++.+.+++..-  ..+....
T Consensus        95 i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~  174 (254)
T PF04826_consen   95 IPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA  174 (254)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc
Confidence            333 3333333 46789999999999986433322334557888889999899999999999999998742  2333455


Q ss_pred             hHHHHHHhhcCCC-CccHHHHHHHHHHHHHhhhchH------------H----H--HHhHHHHHHHhcCCCCccHHHHH
Q 007863          514 QLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS------------V----V--EKSIRPCLVELSEDPDVDVRFFA  573 (587)
Q Consensus       514 ~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~------------~----~--~~~i~~~l~~l~~d~~~~Vr~~a  573 (587)
                      +.++.+..+++.. ..++-..++..+..+...+.++            .    |  .+.+-..|..+...+|++||..+
T Consensus       175 q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  175 QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence            6777777777764 6788888999998887665432            0    0  12244556667788999998764

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=0.0039  Score=68.62  Aligned_cols=437  Identities=14%  Similarity=0.139  Sum_probs=245.6

Q ss_pred             hHHhhhhhhccCCCHHHHHHHHHHHHHhcCCC----CHHHHHHHHH--HHHHHHHHHhh---------hhhHHHHHHHHH
Q 007863          144 SSCGLFHVAYPSAPEALKTELRTIYRQLCQDD----MPMVRRSAAT--NLGKFAATVEA---------AHLKSEIMSIFE  208 (587)
Q Consensus       144 ~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~----~~~vR~~a~~--~l~~l~~~~~~---------~~~~~~i~~~l~  208 (587)
                      .+..+++.++++.+..++-.+++.+...+...    ...|+..+..  ++-.+.+++.+         +.+...-..++.
T Consensus       803 ta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~  882 (2067)
T KOG1822|consen  803 TAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIV  882 (2067)
T ss_pred             HHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHh
Confidence            45667888888888777766666666554432    3344444444  55555554432         333344445556


Q ss_pred             HhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhCCCCc---ccchHHH
Q 007863          209 ELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPT---RSDVVPA  284 (587)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l~~~  284 (587)
                      ..+...++..|..+.++++.++...+...+...+...+.. +-+-.++-.|..-.-++|.+-++.|.-..   ...-+..
T Consensus       883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i  962 (2067)
T KOG1822|consen  883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI  962 (2067)
T ss_pred             hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence            6667778999999999999999988876555555554444 44445677777777888888887765332   2333557


Q ss_pred             HHHhcCCChH-HHHHHHHHhHHHHHHhhCHHH--HHHhHHHHHhHh-cCCC--cHHHHHHHHHHHH------hhhhhhch
Q 007863          285 YVRLLRDNEA-EVRIAAAGKVTKICRILNPEL--AIQHILPCVKEL-SSDS--SQHVRSALATVIM------GMAPILGK  352 (587)
Q Consensus       285 l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~-~~d~--~~~vr~~a~~~l~------~l~~~~~~  352 (587)
                      +..+-.|+.. .|+..++.++..+....++-.  +....+.....+ ++++  ...++...-+++.      .+....|+
T Consensus       963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen  963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred             HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence            7777788764 999999999999988766642  222223333332 3333  3445544444443      44433332


Q ss_pred             H----H-------HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHH
Q 007863          353 D----A-------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (587)
Q Consensus       353 ~----~-------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l  421 (587)
                      +    .       .....+-...-++..+++.+..++++++..+.-........+.+++.+..++....--.|...+..+
T Consensus      1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred             ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence            1    1       1112222222334455788888888888887655554444567888888877776655555544444


Q ss_pred             HHHHHhhChh--------------------hHHHH--HHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChh--------
Q 007863          422 PLLASQLGVG--------------------FFDDK--LGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPD--------  470 (587)
Q Consensus       422 ~~l~~~~~~~--------------------~~~~~--l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~--------  470 (587)
                      ..+....-.+                    ++.++  +--.+..++ ...+...++.....+..+...+..+        
T Consensus      1123 rql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl~l 1202 (2067)
T KOG1822|consen 1123 RQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLDTETDNKLLKNILETLSRMLNSLADELLSSWLML 1202 (2067)
T ss_pred             hHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4443211000                    00000  011111111 1223333444444444422211110        


Q ss_pred             -----------------------------hhhhchHHHHHhhh------cCCccHHHHHHHHHHHHhhcccCh-------
Q 007863          471 -----------------------------WAMQHIVPQVLEMI------NNPHYLYRMTILQAISLLAPVMGS-------  508 (587)
Q Consensus       471 -----------------------------~~~~~~~~~l~~~l------~~~~~~~r~~a~~~l~~l~~~~~~-------  508 (587)
                                                   .+.+..++.-....      ..|.|..|.-++.++..+...+..       
T Consensus      1203 ~k~~l~~~~~~s~~~e~s~~kd~~~~~~~~~dDdt~~~t~~~~~~s~p~~qprW~Trvfaa~cv~r~i~~c~a~~~h~d~ 1282 (2067)
T KOG1822|consen 1203 LKDLLQAAEDFSASKELSGEKDEEDEEQESGDDDTVLTTVSRTDDSKPLVQPRWPTRVFAAECVLRIINVCEAVSAHFDM 1282 (2067)
T ss_pred             HHHHHHHhhhccccccccccccccchhhcccchhhHHhhhccccccCCccccccchHHHHHHHHHHHhhhhhhhhhhhhH
Confidence                                         01122232222211      235799999999998865543321       


Q ss_pred             -------------HHH----HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------------HHHHHhHHHHHH
Q 007863          509 -------------EIT----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------------SVVEKSIRPCLV  559 (587)
Q Consensus       509 -------------~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------------~~~~~~i~~~l~  559 (587)
                                   ..|    ...++...+...++++...|...++.+..+...+..            +.+...+-.++.
T Consensus      1283 ~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~L~~vi~~fSsvpEPeFpGh~iLEQ~qAqvgsAlr 1362 (2067)
T KOG1822|consen 1283 ALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLESLEEVIKRFSSVPEPEFPGHSILEQFQAQVGSALR 1362 (2067)
T ss_pred             HHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHHHHHHHhccCCCCCCCCCchhHHHHHHHHHHHHhc
Confidence                         111    112333444456888999999999999999887632            133333444444


Q ss_pred             H-hcCCCCccHHHHHHHHHHHH
Q 007863          560 E-LSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       560 ~-l~~d~~~~Vr~~a~~al~~l  580 (587)
                      . +..|..++|-..|.+.....
T Consensus      1363 pAF~~dts~dv~a~acqVcS~w 1384 (2067)
T KOG1822|consen 1363 PAFSDDTSPDVTAKACQVCSTW 1384 (2067)
T ss_pred             hhccCCCChHHHHHHHHHHHHH
Confidence            4 45788889988887765543

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.46  E-value=2e-05  Score=67.19  Aligned_cols=99  Identities=15%  Similarity=0.029  Sum_probs=63.6

Q ss_pred             CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCcc
Q 007863          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY  489 (587)
Q Consensus       410 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~  489 (587)
                      ++.+|..++..++.++..++.  +.+...|.+...+.|+++.||..|+.++..+... +.-.....++..+...+.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence            356677777777777665543  2345666777777777777777777777777653 1111234555666666777777


Q ss_pred             HHHHHHHHHHHHhhcccChHHH
Q 007863          490 LYRMTILQAISLLAPVMGSEIT  511 (587)
Q Consensus       490 ~~r~~a~~~l~~l~~~~~~~~~  511 (587)
                      .+|..|..++..+....+++.+
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i   99 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNII   99 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHH
Confidence            7777777777777765444433

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=6.2e-05  Score=75.46  Aligned_cols=222  Identities=13%  Similarity=0.159  Sum_probs=154.1

Q ss_pred             HHHhcCCCChHHHHHHHHHhHHhhhhhc--hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 007863          363 FLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  440 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  440 (587)
                      ....+.|+.+.+|.+++..+..+.+.-.  .-...+.++....+.++|.+.-|-..+++.+..+++..+.. +.+.+...
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~-il~dL~e~  810 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED-ILPDLSEE  810 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh-hHHHHHHH
Confidence            3445667888999999999999887432  22234678888899999999999999999888888864332 22333332


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHHHHHhH
Q 007863          441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQL  515 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~~  515 (587)
                      ..+.-..+..+.|....+++.+++...|+=.  +...++.+++....+|+...|..++..++.+++...   .+ +..++
T Consensus       811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~~ev  889 (982)
T KOG4653|consen  811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FFHEV  889 (982)
T ss_pred             HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HHHHH
Confidence            3222222334556666688888888777643  346788888888999999999999999999987432   34 33444


Q ss_pred             HHHHHh-hcCCCCccHHHHHHHHHHHHHhhhchH--HHH-H---hHHHHHHH-hcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          516 LPVVIN-ASKDRVPNIKFNVAKVLQSLIPIVDQS--VVE-K---SIRPCLVE-LSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       516 l~~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~-~---~i~~~l~~-l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +..++. .-.|..+-+|++|+..+..+....+.+  ++. .   .....+.. ...+++..+|.+|..++..+...|.+
T Consensus       890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~l~n  968 (982)
T KOG4653|consen  890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAALEN  968 (982)
T ss_pred             HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence            444443 456889999999999999998776643  111 1   11122222 34677778999999999999888764

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=0.0004  Score=65.54  Aligned_cols=257  Identities=17%  Similarity=0.106  Sum_probs=142.9

Q ss_pred             hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccch-HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH
Q 007863          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDV-VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA  316 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l-~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  316 (587)
                      ..++-.+..-..|++..+|..|+.+|++.+...+...  ....+ ..++..+.++.+.+|...++.+|..+.........
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            3445555556678999999999999999987644321  12233 44445556667789999999999988876655443


Q ss_pred             HHhHHH---HHhHhcCCCcHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHH---HHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          317 IQHILP---CVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPI---FLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       317 ~~~~~~---~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                      .+.+++   .+.++..|.+..+|.++...++.++...|   ++.+.+.+...   +.-.++|++|.|-.++-..+....+
T Consensus       337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p  416 (533)
T KOG2032|consen  337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYP  416 (533)
T ss_pred             hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCc
Confidence            333333   35567789999999999999999988775   33444444422   2334678888876655555544444


Q ss_pred             hhchhhHhhhhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863          388 VIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  466 (587)
Q Consensus       388 ~~~~~~~~~~~~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  466 (587)
                      .++.++.. .+.+   +.+ |.+- +.+...-.++..+.... ++. .-.+......+++..-+.||.++...-+.+...
T Consensus       417 ~l~rke~~-~~~q---~~l-d~~~~~~q~Fyn~~c~~L~~i~-~d~-l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~  489 (533)
T KOG2032|consen  417 NLVRKELY-HLFQ---ESL-DTDMARFQAFYNQWCIQLNHIH-PDI-LMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDS  489 (533)
T ss_pred             hhHHHHHH-HHHh---hhh-HHhHHHHHHHHHHHHHHHhhhC-HHH-HHHHHHhchhheecchHHHHHHHHHHHHHHHHH
Confidence            44443321 1222   111 1111 11111111111111110 000 011111122233333336777776665555544


Q ss_pred             hChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863          467 FGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLA  503 (587)
Q Consensus       467 ~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~  503 (587)
                      ...+.    ....+...+..+..|+.+.++..+..+++.+.
T Consensus       490 l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  490 LVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            43331    23445556666667777777777777766553

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.41  E-value=1.3e-06  Score=69.57  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=74.0

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HH-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EI-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--  548 (587)
                      ..+++.+.+++.++++.+|..++.++..++.....  .. ....++|.+.+++.|+++.+|..++.+|++++...+..  
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            34667777777777777777777777777754221  11 23367777777777777888888888888887654221  


Q ss_pred             -HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          549 -VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       549 -~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                       .....+++.+.+++.+.+.++|..+..++..++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             222346777888777778888888888887765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.40  E-value=6.4e-05  Score=64.78  Aligned_cols=92  Identities=17%  Similarity=0.254  Sum_probs=73.5

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhchHHHH
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQSVVE  551 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~~~~  551 (587)
                      +.-+..+.+-+.+++.-.|..+..++|++-.        +..+|.+.+.+.|  +++.||..|+++|+.+..        
T Consensus       186 EeaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------  249 (289)
T KOG0567|consen  186 EEAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------  249 (289)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------
Confidence            3456667777777788899999999988864        4456677776666  478999999999999875        


Q ss_pred             HhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          552 KSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       552 ~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +..+++|.+++.|+++-||..+.-||+.+-
T Consensus       250 e~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  250 EDCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            378899999999999999999988887654

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.38  E-value=0.0031  Score=61.92  Aligned_cols=451  Identities=11%  Similarity=0.036  Sum_probs=236.5

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhh-----cccccc---ccCCchHHHHHHHHHhcccccCcCCc
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKEL-----IPFLSE---NNDDDDEVLLAMAEELGVFIPYVGGL   81 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l-----~p~l~~---~~~~~~~v~~~~~~~l~~~~~~~~~~   81 (587)
                      .=.++...+.+.|+++-..|+.-....+-...+.  ...+     +|.+..   .-+...++..+.+-.++.+..  |..
T Consensus        10 ss~~~l~~L~~~dpe~lvrai~~~kN~vig~~~~--K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~--~eq   85 (678)
T KOG1293|consen   10 SSLDLLYRLLHLDPEQLVRAIYMSKNLVIGFTDN--KETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFL--GEQ   85 (678)
T ss_pred             hhHHHHHhhhcCCHHHHHHHHHHhcchhhcCCCc--cchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHh--hcc
Confidence            3456777888999988777766655544333221  1111     233332   334455666666666665432  221


Q ss_pred             c-----hHhhhhhHHHhhhcCch-hHHHHHHHHHHHHHHhhcChh-----hHhhhhHHHHHHhhcCC-CCcchhhHHhhh
Q 007863           82 E-----YANVLLPPLETLCTVEE-TCVRDKAVESLCRIGSQMREQ-----DVVEHFIPLVKRLAAGE-WFTARVSSCGLF  149 (587)
Q Consensus        82 ~-----~~~~l~~~l~~l~~~~~-~~vr~~a~~~l~~l~~~~~~~-----~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~  149 (587)
                      .     .....++-+.++++++| ..+++...+++.++.+..+..     .....+.+.+.-+...+ ....+-. +.+.
T Consensus        86 d~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~-~~~~  164 (678)
T KOG1293|consen   86 DKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLD-VSRA  164 (678)
T ss_pred             chHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhh-hhhh
Confidence            1     12334455667778888 899999999999998754221     11222333333322211 1111111 1111


Q ss_pred             hhhccCCCHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HHHHHHhh-------hhhHHHHHH--HHHHhcccC
Q 007863          150 HVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLG---KFAATVEA-------AHLKSEIMS--IFEELTQDD  214 (587)
Q Consensus       150 ~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~---~l~~~~~~-------~~~~~~i~~--~l~~l~~d~  214 (587)
                      .........+   .-..+.+-+.-+....+..+|.++..++.   .+...-+.       ......+.+  ...++..++
T Consensus       165 a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~  244 (678)
T KOG1293|consen  165 AHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP  244 (678)
T ss_pred             ccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC
Confidence            1111111111   11233344444445556788999888888   33222110       011112222  455678888


Q ss_pred             chhHHHHHHHHHHHHhcccCh-h-----hh-----hhchHH-HHHHhcCCCchHHHHHHHHHHHH---HHHHhCCCCccc
Q 007863          215 QDSVRLLAVEGCGALGKLLEP-Q-----DC-----VAHILP-VIVNFSQDKSWRVRYMVANQLYE---LCEAVGPEPTRS  279 (587)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~-~-----~~-----~~~l~~-~l~~~~~d~~~~vR~~a~~~l~~---l~~~~~~~~~~~  279 (587)
                      ++..|..+..++..+...-.. +     .+     .+.+.. ....+..|+-|..-..++..+-.   ++..........
T Consensus       245 ~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~  324 (678)
T KOG1293|consen  245 DFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEE  324 (678)
T ss_pred             CccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhh
Confidence            888888888888877654311 0     00     001111 11223344433222222222222   222221111111


Q ss_pred             chHHHHHHhc------CCChHHHHHHHHHhHHHH---HHhhCH---HHHH-HhHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 007863          280 DVVPAYVRLL------RDNEAEVRIAAAGKVTKI---CRILNP---ELAI-QHILPCVKELSSDSSQHVRSALATVIMGM  346 (587)
Q Consensus       280 ~l~~~l~~~l------~d~~~~vr~~a~~~l~~l---~~~~~~---~~~~-~~~~~~l~~~~~d~~~~vr~~a~~~l~~l  346 (587)
                      ...+...+++      ....++.|.-+++-..-.   +...+.   +.+. ......+....-..+..++.+++.++..+
T Consensus       325 ~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~  404 (678)
T KOG1293|consen  325 ATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSF  404 (678)
T ss_pred             hhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence            2233333332      233445554444322111   111111   1111 11122222233345778999999888877


Q ss_pred             hhhhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHH
Q 007863          347 APILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEY  420 (587)
Q Consensus       347 ~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~  420 (587)
                      ...+.   ...-...+...+.+++.|++..|...+..++..+...+++-   .+....+..+.+...+++..+|..+..+
T Consensus       405 srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~  484 (678)
T KOG1293|consen  405 SRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWV  484 (678)
T ss_pred             HHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHH
Confidence            65442   11112345566778889999999999999999998777642   3455678889999999999999999988


Q ss_pred             HHHHHHhhChhh----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863          421 IPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       421 l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                      +..+.-....+.    +..--...+..+..|++|.|.+++.+.+.++.-
T Consensus       485 Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  485 LRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            877764332221    122234456677899999999999999988864

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.35  E-value=0.003  Score=61.06  Aligned_cols=202  Identities=15%  Similarity=0.047  Sum_probs=118.1

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhCh--hhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcCCcchHhh
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGE--ERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVGGLEYANV   86 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~--~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~   86 (587)
                      .+.+++-++.|+|..+|..+.+-+.-+....++  +....-|+.-+.+ ..|.++-||..+..+|..+-..-+.++  ..
T Consensus        92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--n~  169 (885)
T COG5218          92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--NR  169 (885)
T ss_pred             HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--HH
Confidence            478888999999999999999888877766665  4444444444433 567888999999999988755444333  22


Q ss_pred             hhhHHHh-hhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhH-HhhhhhhccCCCHHHHHHH
Q 007863           87 LLPPLET-LCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSS-CGLFHVAYPSAPEALKTEL  164 (587)
Q Consensus        87 l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a-~~l~~~~~~~~~~~~~~~l  164 (587)
                      +..++.. +..||...||+.|+-.+..          ...-.|++.+-+.|-+-..|... ...+..+.......+.+.+
T Consensus       170 ~~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri  239 (885)
T COG5218         170 IVNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRI  239 (885)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcccccee
Confidence            3334333 3468999999998744322          12234555554544333333222 2233333222222233333


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      + ++...+.|.+..||.++..++..-....    ....++.++..+-    ..-|..++.++..+.+.
T Consensus       240 ~-l~ewgl~dRe~sv~~a~~d~ia~~w~~~----~d~~lveLle~lD----vSr~sv~v~aik~~F~~  298 (885)
T COG5218         240 L-LMEWGLLDREFSVKGALVDAIASAWRIP----EDLRLVELLEFLD----VSRRSVLVAAIKGVFEK  298 (885)
T ss_pred             h-hhhhcchhhhhhHHHHHHHHHHHHhccc----ccccHHHHHHHHh----hhhHHHHHHHHHHHHhh
Confidence            3 6667788889999999988876533221    1223444443332    22344555556655554

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=0.00053  Score=67.53  Aligned_cols=105  Identities=17%  Similarity=0.172  Sum_probs=50.0

Q ss_pred             HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh
Q 007863          315 LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       315 ~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  392 (587)
                      .+...++.++.+....++..||...+..+..+....+  .+...+.+...+..-+.|..|.||..|+.+|+.+-..-+.+
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            3344444555555555555555555555555544332  22233444444445555555555555555555554322222


Q ss_pred             hHhhhhHHHHHHHh-cCCCcHHHHHHHHHH
Q 007863          393 LLSQSLLPAIVELA-EDRHWRVRLAIIEYI  421 (587)
Q Consensus       393 ~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l  421 (587)
                      ..  .+...+..++ +|++..||.+++..+
T Consensus       161 e~--~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  161 EC--PVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             cc--cHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            21  3444444443 245555555554433

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.34  E-value=0.00026  Score=69.60  Aligned_cols=172  Identities=16%  Similarity=0.096  Sum_probs=119.6

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh
Q 007863          159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ  236 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~  236 (587)
                      +....++..+.....+++..||..+++.|..+......  +...+.+...+..-+.|..+.||..|+.+|..+-+.-.+ 
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-  159 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-  159 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC-
Confidence            46777888888888999999999999999998874432  455666666677778889999999999999988642211 


Q ss_pred             hhhhchHHHHHHhc-CCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHh-HHHHHHhhCHH
Q 007863          237 DCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGK-VTKICRILNPE  314 (587)
Q Consensus       237 ~~~~~l~~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~-l~~l~~~~~~~  314 (587)
                       ..-.+...+..++ +|++++||++|+.++..          .+.-.|.+.....|-+..+|+.+-.. +..+ .. ...
T Consensus       160 -ee~~v~n~l~~liqnDpS~EVRRaaLsnI~v----------dnsTlp~IveRarDV~~anRrlvY~r~lpki-d~-r~l  226 (892)
T KOG2025|consen  160 -EECPVVNLLKDLIQNDPSDEVRRAALSNISV----------DNSTLPCIVERARDVSGANRRLVYERCLPKI-DL-RSL  226 (892)
T ss_pred             -CcccHHHHHHHHHhcCCcHHHHHHHHHhhcc----------CcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hh-hhh
Confidence             2334566666655 48899999999876542          34567888888888877777665433 3333 11 111


Q ss_pred             HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 007863          315 LAIQHILPCVKELSSDSSQHVRSALATVIMG  345 (587)
Q Consensus       315 ~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  345 (587)
                      . .+.-+-.+...++|.+..||.++.+++..
T Consensus       227 s-i~krv~LlewgLnDRe~sVk~A~~d~il~  256 (892)
T KOG2025|consen  227 S-IDKRVLLLEWGLNDREFSVKGALVDAILS  256 (892)
T ss_pred             h-HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            1 13345556677788888888887776643

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.33  E-value=0.00039  Score=60.15  Aligned_cols=197  Identities=16%  Similarity=0.173  Sum_probs=126.5

Q ss_pred             hchHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---
Q 007863          240 AHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---  314 (587)
Q Consensus       240 ~~l~~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---  314 (587)
                      ..-+|.+...+.|  ..+.||..|+++|+.+.        .+...+++.++.+|+-..||..+..++..+-..-+-.   
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~  137 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIA  137 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccccc
Confidence            3456666666655  46788889988888776        2457788888888888888888777777664321100   


Q ss_pred             ---HHH---------HhHHHHHhHhcCCCc--HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863          315 ---LAI---------QHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS  380 (587)
Q Consensus       315 ---~~~---------~~~~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  380 (587)
                         .+.         ..-+.-+...+.|.+  -.-|..+...+..++   +     +.-+..+...+.++++-.|-.++.
T Consensus       138 ~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g---~-----EeaI~al~~~l~~~SalfrhEvAf  209 (289)
T KOG0567|consen  138 NSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG---T-----EEAINALIDGLADDSALFRHEVAF  209 (289)
T ss_pred             ccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC---c-----HHHHHHHHHhcccchHHHHHHHHH
Confidence               000         000111111122221  123334444444433   1     122345667778888889999999


Q ss_pred             HhHHhhhhhchhhHhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHH
Q 007863          381 KLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAAN  458 (587)
Q Consensus       381 ~l~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  458 (587)
                      +++++-.        +.-+|.+.+.+.|  +++-||..+.++++.++.        +..++++...++|+.+-||+.+.-
T Consensus       210 VfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e~~~~vL~e~~~D~~~vv~esc~v  273 (289)
T KOG0567|consen  210 VFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------EDCVEVLKEYLGDEERVVRESCEV  273 (289)
T ss_pred             HHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------HHHHHHHHHHcCCcHHHHHHHHHH
Confidence            9888764        4567777777665  578899999999988774        557888889999999999998888


Q ss_pred             HHHHHHHHhC
Q 007863          459 NVKRLAEEFG  468 (587)
Q Consensus       459 ~l~~l~~~~~  468 (587)
                      +|...-...+
T Consensus       274 aldm~eyens  283 (289)
T KOG0567|consen  274 ALDMLEYENS  283 (289)
T ss_pred             HHHHHHHhcc
Confidence            8766544333

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.32  E-value=4.8e-06  Score=66.30  Aligned_cols=107  Identities=15%  Similarity=0.083  Sum_probs=81.1

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC---hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--H
Q 007863          436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--I  510 (587)
Q Consensus       436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~  510 (587)
                      .+++.+..++.+.++.+|..++.+++.++....   .......++|.+.+++.+++..+|..++.++++++...+..  .
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            356677777888888888888888888886421   12233578888888888888899999999999998754321  1


Q ss_pred             -HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          511 -TCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       511 -~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                       ....+++.+...+.+.+..+|..++.++..++
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             23447888888888888899999999888775

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.30  E-value=0.00081  Score=66.32  Aligned_cols=278  Identities=16%  Similarity=0.170  Sum_probs=148.9

Q ss_pred             CcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhH
Q 007863          139 FTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSV  218 (587)
Q Consensus       139 ~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~v  218 (587)
                      ...+..|+.++...+..+ ++..+..++.+..+|+|++..||..|++.|..++...  +.+...+..+|.++++.+++..
T Consensus        36 ~k~K~Laaq~I~kffk~F-P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~tdd~~E  112 (556)
T PF05918_consen   36 PKEKRLAAQFIPKFFKHF-PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQTDDPVE  112 (556)
T ss_dssp             HHHHHHHHHHHHHHHCC--GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---HHH
T ss_pred             HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhcccHHH
Confidence            445667778888888877 5577788899999999999999999999999999853  4688889999999999888877


Q ss_pred             HHHHHHHHHHHhcccChhhhhhchHHHHHHhc--CCCchHHHHHHHHHHHHHHHHhCCCCcc------cchHHHHHHhcC
Q 007863          219 RLLAVEGCGALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR------SDVVPAYVRLLR  290 (587)
Q Consensus       219 r~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~  290 (587)
                      +...-.+|..+...-+.    ..+-.++.++.  ...+..+|.-++..|..-...++.+...      ..+...+.+.++
T Consensus       113 ~~~v~~sL~~ll~~d~k----~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~  188 (556)
T PF05918_consen  113 LDAVKNSLMSLLKQDPK----GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ  188 (556)
T ss_dssp             HHHHHHHHHHHHHH-HH----HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhcCcH----HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH
Confidence            77777778777664332    22333333333  2456779999998887655555544433      235667777888


Q ss_pred             CChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHhcC-----C-CcHHHHHHHHHHHHhhhhhh----chHHHHHh
Q 007863          291 DNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSS-----D-SSQHVRSALATVIMGMAPIL----GKDATIEQ  358 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~-----d-~~~~vr~~a~~~l~~l~~~~----~~~~~~~~  358 (587)
                      |-..+-=...+..|..+-..  ..+......+++.+.....     + .+...-...+.++..-...+    ....+..+
T Consensus       189 DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y  268 (556)
T PF05918_consen  189 DVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVNY  268 (556)
T ss_dssp             T--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHH
T ss_pred             hccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHH
Confidence            74432222222222222211  1112223556666664431     1 22333233333333322332    23334444


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc------CCCcHHHHHHHHHHHHH
Q 007863          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLL  424 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l  424 (587)
                      +..-++.-+.+-.++.|...+..+++++...+..+ ...++|.+..++.      ...+......++++-..
T Consensus       269 ~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~a  339 (556)
T PF05918_consen  269 MCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYA  339 (556)
T ss_dssp             HHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHH
T ss_pred             HHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHH
Confidence            44444444555567889999999999999988665 3456666666553      23444444555554433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.28  E-value=0.00012  Score=68.45  Aligned_cols=192  Identities=15%  Similarity=0.196  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      ....+.+.+..+-.+....-|+.|...|-.+...-+.   +.+...|+-.+.+.+.| .++..|..|.+.|..+...-+.
T Consensus       284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~  363 (516)
T KOG2956|consen  284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA  363 (516)
T ss_pred             hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence            4456666677776665566777777766554432211   34445566666677777 7888999999999998876554


Q ss_pred             --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  313 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        ....+..+..+++...|.+..|-..|.+.+..+.....+......+.|.+..    .+...-.++++.+..+.+.+..
T Consensus       364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~  439 (516)
T KOG2956|consen  364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA  439 (516)
T ss_pred             hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence              2233445556666777877777666666655554433322222233444433    4445556777788888888887


Q ss_pred             HH---HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHH
Q 007863          314 EL---AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT  355 (587)
Q Consensus       314 ~~---~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~  355 (587)
                      +.   ..+.+.|.+.+..++.+..||.+++.+|..+...+|.+..
T Consensus       440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m  484 (516)
T KOG2956|consen  440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM  484 (516)
T ss_pred             HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence            73   4567888888888899999999999999998888775443

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.27  E-value=0.00012  Score=68.55  Aligned_cols=190  Identities=14%  Similarity=0.136  Sum_probs=131.0

Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCC
Q 007863          201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP  276 (587)
Q Consensus       201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~  276 (587)
                      +.+...+.++-+++..+-|..|..-|..+...-+.   +.+...++-.+.+.+.| .+...|..|++.|+.++..-+...
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l  365 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL  365 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence            34555666666666666778777766555433221   34456677777888888 789999999999999988755433


Q ss_pred             ccc--chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH
Q 007863          277 TRS--DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA  354 (587)
Q Consensus       277 ~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  354 (587)
                      ...  ..+.-+.+.-+|.+++|-..|.+.+..+.....+..-...+.|.+..    .+...-.++++.+..+++.+..+.
T Consensus       366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~Ee  441 (516)
T KOG2956|consen  366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEE  441 (516)
T ss_pred             hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHH
Confidence            221  23444555667888887777777766666655555433445555543    444555667778888888777665


Q ss_pred             ---HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH
Q 007863          355 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       355 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~  394 (587)
                         ..+.+.|.+.+.....+..||+.++.+|-.+...+|.+.+
T Consensus       442 L~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~m  484 (516)
T KOG2956|consen  442 LLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEM  484 (516)
T ss_pred             HHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhh
Confidence               3467889999999999999999999999999988886543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.0011  Score=66.66  Aligned_cols=153  Identities=10%  Similarity=0.077  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhhh--hhH-HHHHHHH-HHhcccCchhHHHHHHHHHHHHhcccC
Q 007863          160 LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAA--HLK-SEIMSIF-EELTQDDQDSVRLLAVEGCGALGKLLE  234 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~~--~~~-~~i~~~l-~~l~~d~~~~vr~~a~~~l~~l~~~~~  234 (587)
                      -.+.++|.+..++++. ++.+-..||.+|..+++.++..  ..+ ...+|.| .++..-+.-+|...+..++..+...-+
T Consensus       208 pv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~  287 (1051)
T KOG0168|consen  208 PVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP  287 (1051)
T ss_pred             cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc
Confidence            4567888888887764 6889999999999999988752  111 2234433 345555667788888888888887766


Q ss_pred             hhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCccc--chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 007863          235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRS--DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN  312 (587)
Q Consensus       235 ~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~--~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      .......-+..++..+.-=+..+++.|+..-.+.|..+..+....  +.+|.+..+++..+..+-+.++-++..+...+.
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            554444445555555555566778888888888888877655432  568999999988888888888888888877654

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.21  E-value=0.0021  Score=64.58  Aligned_cols=408  Identities=12%  Similarity=0.072  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccChhh
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQD  237 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~  237 (587)
                      ..+.+++.+..-+.++...||..+.+.+..+...+.. +.+.=-+-.++.++-+.+ ...||..++--+..-.+.++.+ 
T Consensus        20 ~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~-   98 (501)
T PF13001_consen   20 VLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDE-   98 (501)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHH-
Confidence            3444555555555677799999999999999888765 333222334444444444 5788988887777766666654 


Q ss_pred             hhhchHHHHHHhcCCCchH---HHHHHHHHHHHHHHHhCCCCcccc---hH--HHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863          238 CVAHILPVIVNFSQDKSWR---VRYMVANQLYELCEAVGPEPTRSD---VV--PAYVRLLRDNEAEVRIAAAGKVTKICR  309 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~---vR~~a~~~l~~l~~~~~~~~~~~~---l~--~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                      ....++|.+.+.++.....   .....+..+..+++.......+..   ..  +.-...+.|.  ......+.....+..
T Consensus        99 e~~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~  176 (501)
T PF13001_consen   99 ERRELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSLGLSDF--CDDVFLAPWFSKFLL  176 (501)
T ss_pred             HHHHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHHhhcch--HHHHHcchhhccccc
Confidence            3556778887777643221   222222222223332211000000   00  0000011110  000000000000000


Q ss_pred             h--------hCHHHHHHhHHHH--HhHhcC------C--CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC
Q 007863          310 I--------LNPELAIQHILPC--VKELSS------D--SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF  371 (587)
Q Consensus       310 ~--------~~~~~~~~~~~~~--l~~~~~------d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  371 (587)
                      .        -|...-....+..  +.....      +  .-..+|.++++.+..-.  ++    .+..++.+.-.-.|++
T Consensus       177 l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~--f~----d~~~~~~~liAsad~~  250 (501)
T PF13001_consen  177 LQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGF--FP----DEERFPPLLIASADSN  250 (501)
T ss_pred             cccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcC--CC----cHhHHhheeeEEeCCc
Confidence            0        0000000000000  000000      0  11245555555554332  11    1123333444446777


Q ss_pred             hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHH--HHhcC-----CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH
Q 007863          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV--ELAED-----RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  444 (587)
Q Consensus       372 ~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~--~~~~~-----~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  444 (587)
                      ..|...+-..|.++...+....+.+.++..+.  ..-.+     -++.+|..++..+..   ........+.++.++...
T Consensus       251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~k---S~~Aa~~~~~~~~i~~~~  327 (501)
T PF13001_consen  251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSK---SVIAATSFPNILQIVFDG  327 (501)
T ss_pred             chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHH---hHHHHhCCccHHHHHhcc
Confidence            88888888888888877665544444444443  11111     246677666655543   322222235667777777


Q ss_pred             cCCC--chHHHHHHHHHH---HHHHHHhChhhh---hhchHHHHHhhhc--------CCccHHHHHHHHHHHHhhcccCh
Q 007863          445 LKDK--VYSIRDAAANNV---KRLAEEFGPDWA---MQHIVPQVLEMIN--------NPHYLYRMTILQAISLLAPVMGS  508 (587)
Q Consensus       445 l~d~--~~~vr~~a~~~l---~~l~~~~~~~~~---~~~~~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~  508 (587)
                      +.+.  ...+|..+++.+   ......++....   .+.+...+...+.        ..+...|..+..+||.++...+.
T Consensus       328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~  407 (501)
T PF13001_consen  328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPS  407 (501)
T ss_pred             ccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcc
Confidence            7777  778999999999   777777766531   1222222222231        23567999999999999986554


Q ss_pred             HH-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHH-----HHhHHH-HHHHhcCCCCccHHHHHHHHHHH
Q 007863          509 EI-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRP-CLVELSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       509 ~~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~i~~-~l~~l~~d~~~~Vr~~a~~al~~  579 (587)
                      -. -.-.++..++..+.++.+++|.+.-++|+.+...+....-     ....+. .+.....+....+|..|++-...
T Consensus       408 l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~  485 (501)
T PF13001_consen  408 LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA  485 (501)
T ss_pred             cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            32 1234566677777889999999999999999988754221     111222 22224456667788887765443

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.20  E-value=0.00057  Score=63.58  Aligned_cols=180  Identities=20%  Similarity=0.187  Sum_probs=113.3

Q ss_pred             hcCCCcHHHHHHHHHHHHHHHh-hChhhH---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC--h--hhhhhchH
Q 007863          406 AEDRHWRVRLAIIEYIPLLASQ-LGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--P--DWAMQHIV  477 (587)
Q Consensus       406 ~~~~~~~vr~~~~~~l~~l~~~-~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~~~  477 (587)
                      +.++....|..+++.+..+... +-.+++   ...+++.+.+.++....+-+..|+++++-++-.+|  .  +.+.+.+.
T Consensus        52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~  131 (309)
T PF05004_consen   52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK  131 (309)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence            3455566677776666554422 223332   24567777777776666666777888888877766  2  23456778


Q ss_pred             HHHHhhhcCCc--cHHHHHHHHHHHHhhcccChH-HHHH---hHHHHHHh--hcC-C---------CCccHHHHHHHHHH
Q 007863          478 PQVLEMINNPH--YLYRMTILQAISLLAPVMGSE-ITCS---QLLPVVIN--ASK-D---------RVPNIKFNVAKVLQ  539 (587)
Q Consensus       478 ~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~-~~~~---~~l~~l~~--~l~-d---------~~~~vR~~a~~~l~  539 (587)
                      |.|...+.|..  ...|..++.+++.+.-..+.+ .-..   ..+..+..  ..+ |         +++.+..+|+.+++
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~  211 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA  211 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence            88888777764  456777777777665433322 1122   22331111  111 1         24568888888888


Q ss_pred             HHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          540 SLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       540 ~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      .+...++..   ...+..+|.|..++..++.+||..|.++++-+.+..+
T Consensus       212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            888777663   3345567888888888889999999999988877654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=0.0043  Score=55.51  Aligned_cols=348  Identities=14%  Similarity=0.156  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhh-------hhhchHHHHHHhcCCCch
Q 007863          183 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQD-------CVAHILPVIVNFSQDKSW  255 (587)
Q Consensus       183 a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~~~d~~~  255 (587)
                      +..+|..+.+........+.+.|-++..+..++..|+..++..++.+.+..+.+.       .-..+++.+..++...+.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            4555555555554456667778888888888888888888888888877766321       124578888888888899


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC----------ChHHHHHHHHHhHHHHHHhhCHHH----HHHhHH
Q 007863          256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD----------NEAEVRIAAAGKVTKICRILNPEL----AIQHIL  321 (587)
Q Consensus       256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----------~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~  321 (587)
                      .|-++|.+.+..++..-      ..+--+|-+-+.|          -+.-+|......+..+... +++.    ....++
T Consensus       143 eVAkAAiesikrialfp------aaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLl  215 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFP------AALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLL  215 (524)
T ss_pred             HHHHHHHHHHHHHHhcH------HHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHH
Confidence            99999999988876421      1111111111111          1223444445555444432 2221    123355


Q ss_pred             HHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchHHHH--HhHHHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchhhHhh
Q 007863          322 PCVKELS-SDSSQHVRSALATVIMGMAPILGKDATI--EQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQ  396 (587)
Q Consensus       322 ~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~  396 (587)
                      ..+..-+ ...+.-|+..+++...+++..-....+.  +.++..+...+.  |++|.-+..   ++..+.+.+|++.+.+
T Consensus       216 dlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfr---almgfgkffgkeaimd  292 (524)
T KOG4413|consen  216 DLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFR---ALMGFGKFFGKEAIMD  292 (524)
T ss_pred             HHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHH---HHHHHHHHhcchHHhh
Confidence            5554333 3466778888888888887544322222  224444444432  333433322   3333444444332211


Q ss_pred             --------h---hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-hhhHH----HHHHHHHHHHcCCCchHHHHHHHHHH
Q 007863          397 --------S---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VGFFD----DKLGALCMQWLKDKVYSIRDAAANNV  460 (587)
Q Consensus       397 --------~---~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l  460 (587)
                              .   .+....+.++..+++....++..++.+..... .+...    +..-.++.+........-.+.++.+|
T Consensus       293 vseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaL  372 (524)
T KOG4413|consen  293 VSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHAL  372 (524)
T ss_pred             cCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHH
Confidence                    1   12222345566788889999999998876542 22221    22333344444333334456777788


Q ss_pred             HHHHHHhC---------hh-------hhh-----hch--HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHH-
Q 007863          461 KRLAEEFG---------PD-------WAM-----QHI--VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLL-  516 (587)
Q Consensus       461 ~~l~~~~~---------~~-------~~~-----~~~--~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l-  516 (587)
                      ..+.....         ..       +|.     .++  +..+...++.|.+++|.++++.+..++..   .|....++ 
T Consensus       373 aaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq---PWalkeifa  449 (524)
T KOG4413|consen  373 AAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ---PWALKEIFA  449 (524)
T ss_pred             HHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC---cHHHHHHhc
Confidence            77765321         11       010     111  12233346678899999999999988752   22233332 


Q ss_pred             -HHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863          517 -PVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       517 -~~l~~~l~d~~~~vR~~a~~~l~~l~~  543 (587)
                       |.+++...|.+.+.-..+..+=..+++
T Consensus       450 keefieiVtDastEhaKaakdAkYeccK  477 (524)
T KOG4413|consen  450 KEEFIEIVTDASTEHAKAAKDAKYECCK  477 (524)
T ss_pred             CccceeeecccchhhHHHHHHHHHHHHH
Confidence             345555666655444444443333333

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=0.00051  Score=69.21  Aligned_cols=213  Identities=17%  Similarity=0.187  Sum_probs=147.2

Q ss_pred             HhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHH
Q 007863          326 ELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (587)
Q Consensus       326 ~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~  403 (587)
                      ..+.|+...+|..++..+..+.+.-.  .-...+.++......++|.++.|-..+++.+..++..+.     +.++|.+.
T Consensus       734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~dL~  808 (982)
T KOG4653|consen  734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPDLS  808 (982)
T ss_pred             HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHHHH
Confidence            34567777889999988888876332  223456788899999999999999999998888887643     45667666


Q ss_pred             HHhc---C-CCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC---hhhhhh
Q 007863          404 ELAE---D-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG---PDWAMQ  474 (587)
Q Consensus       404 ~~~~---~-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~  474 (587)
                      +...   + ...+.|..+-+++..+....|.-.  +...+...++...+|++..-|..++..+|.++....   .+++ .
T Consensus       809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~  887 (982)
T KOG4653|consen  809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-H  887 (982)
T ss_pred             HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-H
Confidence            5332   1 224556666688888888777533  235677888888999999999999999999998654   3433 3


Q ss_pred             chHHHHHhh-hcCCccHHHHHHHHHHHHhhcccChHH--HH----HhHHHHHHhh-cCCCCccHHHHHHHHHHHHHhh
Q 007863          475 HIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSEI--TC----SQLLPVVINA-SKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       475 ~~~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~----~~~l~~l~~~-l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                      .++..+... ..|....+|.+|+..+..+....|.+-  +.    ......+... ..++...+|..+..++..+-..
T Consensus       888 ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~  965 (982)
T KOG4653|consen  888 EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA  965 (982)
T ss_pred             HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence            344444443 567788999999999999988777541  11    0111122222 2355667888888877766443

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.15  E-value=0.00087  Score=67.29  Aligned_cols=402  Identities=14%  Similarity=0.098  Sum_probs=214.1

Q ss_pred             hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcCh-hhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHHHH
Q 007863           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMRE-QDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALKTE  163 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~~~  163 (587)
                      .+.|+|.++ .+++..||...++.+..+-+.+.. ..+.--+-.++.++.+.+ ...+|..+.-.+..-.++.+.+.+..
T Consensus        24 ~L~plLlkl-~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~Rl~~~e~~~  102 (501)
T PF13001_consen   24 YLPPLLLKL-ASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDRLDDEERRE  102 (501)
T ss_pred             HHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhcCCHHHHHH
Confidence            344555555 567889999999999998887765 333333444555656555 56677777777777788998888889


Q ss_pred             HHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHHhhh-----hhHHHH-HHHHHHhcccCchhHHHHHHHHHHHHhccc-
Q 007863          164 LRTIYRQLCQDDMPMVRR---SAATNLGKFAATVEAA-----HLKSEI-MSIFEELTQDDQDSVRLLAVEGCGALGKLL-  233 (587)
Q Consensus       164 l~~~l~~l~~~~~~~vR~---~a~~~l~~l~~~~~~~-----~~~~~i-~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-  233 (587)
                      ++|.+.+.+......-+.   ..+..+..+++.....     ...... ..... .+.+.  .....   ......... 
T Consensus       103 llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~~~~~~~~~~~~~~~~~~~~-~l~~~--~~~~~---l~~~~~~~~~  176 (501)
T PF13001_consen  103 LLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLPDWKEPPRGSKEDEKFRDSL-GLSDF--CDDVF---LAPWFSKFLL  176 (501)
T ss_pred             HHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCCccccccccchhhhcHHHHH-hhcch--HHHHH---cchhhccccc
Confidence            999888887643211111   1111111122211110     000000 00000 00000  00000   000000000 


Q ss_pred             --------Ch---hhhhhchHH-HHHHhcCC--------CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh
Q 007863          234 --------EP---QDCVAHILP-VIVNFSQD--------KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE  293 (587)
Q Consensus       234 --------~~---~~~~~~l~~-~l~~~~~d--------~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  293 (587)
                              .+   ....+.+-. ........        .-.++|...++.+..-..      ...+.++.++-...|++
T Consensus       177 l~~~~~~~~pgl~~~~~~~ls~~~~~r~~~~~~~~~~~~~L~~~K~~il~fL~sg~f------~d~~~~~~~liAsad~~  250 (501)
T PF13001_consen  177 LQPNRAYACPGLSPADPPGLSLSSAKRIEGKGPTFPSRENLTERKLAILKFLASGFF------PDEERFPPLLIASADSN  250 (501)
T ss_pred             cccccccCCCCCCCCCCCCCCHHhhhhhhccCCCCCcHHHHHHHHHHHHHHHHhcCC------CcHhHHhheeeEEeCCc
Confidence                    00   000000000 01111111        112345554454433211      12244555555557788


Q ss_pred             HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHh--HhcCC-----CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh
Q 007863          294 AEVRIAAAGKVTKICRILNPELAIQHILPCVK--ELSSD-----SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL  366 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~--~~~~d-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  366 (587)
                      .+|...|-..|.++...++...+...++..+.  ..-.+     .++.+|......++.-..   .....+.++.++...
T Consensus       251 ~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~---Aa~~~~~~~~i~~~~  327 (501)
T PF13001_consen  251 SSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI---AATSFPNILQIVFDG  327 (501)
T ss_pred             chHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH---HHhCCccHHHHHhcc
Confidence            89999999999988887777777777777776  21111     256777777666654211   111234455566666


Q ss_pred             cCCC--ChHHHHHHHHHh---HHhhhhhchhhHhhhhHHHHH----HHhc--------CCCcHHHHHHHHHHHHHHHhhC
Q 007863          367 LKDE--FPDVRLNIISKL---DQVNQVIGIDLLSQSLLPAIV----ELAE--------DRHWRVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       367 l~d~--~~~vr~~a~~~l---~~i~~~~~~~~~~~~~~~~l~----~~~~--------~~~~~vr~~~~~~l~~l~~~~~  429 (587)
                      +.+.  +..+|..+...+   .......+.... +.+-|.+.    ..+.        ..+...|..+.+++|.+++..+
T Consensus       328 l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l-~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p  406 (501)
T PF13001_consen  328 LYSDNTNSKLKSLALQFIRGSSWIFKHISPQIL-KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP  406 (501)
T ss_pred             ccCCccccccchhcchhhhcchHHhhhcCHHHH-HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc
Confidence            6666  677888888888   666666554432 22333332    2332        2356789999999999988665


Q ss_pred             hhhHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh-----hhchHHHHH-hhhcCCccHHHHHHHHHHHHh
Q 007863          430 VGFFD-DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA-----MQHIVPQVL-EMINNPHYLYRMTILQAISLL  502 (587)
Q Consensus       430 ~~~~~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~~~~~l~-~~l~~~~~~~r~~a~~~l~~l  502 (587)
                      .-+.. -.++..++..+.++..++|...-++|..+...+....-     ....+..+. ....+....+|.+|+++...+
T Consensus       407 ~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~  486 (501)
T PF13001_consen  407 SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANAC  486 (501)
T ss_pred             ccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            43211 24566666667888999999999999988887654211     111111121 122344566788888777766


Q ss_pred             hc
Q 007863          503 AP  504 (587)
Q Consensus       503 ~~  504 (587)
                      .+
T Consensus       487 fp  488 (501)
T PF13001_consen  487 FP  488 (501)
T ss_pred             CC
Confidence            65

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=98.12  E-value=0.0052  Score=69.69  Aligned_cols=291  Identities=13%  Similarity=0.146  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hh-----hhhchHHHHH
Q 007863          180 RRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD-----CVAHILPVIV  247 (587)
Q Consensus       180 R~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~-----~~~~l~~~l~  247 (587)
                      |....+-|..++.+.-.      ..+|..+-+.+.....+.+..++..|+..|..++..+-+ ++     +.+.++.-+.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            55555555555544322      244555666666654455577899999999888765543 21     2333444443


Q ss_pred             H-hcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH------HHHHH
Q 007863          248 N-FSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP------ELAIQ  318 (587)
Q Consensus       248 ~-~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~  318 (587)
                      . +.+..+..+|...++++..+....+.  ...|+.++.++.....++++.+-..|...+..+....-.      .....
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            3 33466789999999999998876554  235778888888888888888888888888777653211      11223


Q ss_pred             hHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhh-----------------------------------chHHHHHhHHHH
Q 007863          319 HILPCVKELSSDS-SQHVRSALATVIMGMAPIL-----------------------------------GKDATIEQLLPI  362 (587)
Q Consensus       319 ~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~-----------------------------------~~~~~~~~l~~~  362 (587)
                      .++..+.++.+.. +..+--.++..+..++..+                                   +.+......+|+
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            4445555444322 2233333333333221111                                   011112334555


Q ss_pred             HHH---hcCCCChHHHHHHHHHhHHhhhhhchh--------hHhhhhHHHHHHHhc-----------------C-CCc--
Q 007863          363 FLS---LLKDEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAIVELAE-----------------D-RHW--  411 (587)
Q Consensus       363 l~~---~l~d~~~~vr~~a~~~l~~i~~~~~~~--------~~~~~~~~~l~~~~~-----------------~-~~~--  411 (587)
                      +..   +..|+.++||..|+..|-.+....|..        .+...+.|.+..+-.                 + +++  
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence            543   467899999999999999988877743        123345555543211                 0 011  


Q ss_pred             --HHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863          412 --RVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  470 (587)
Q Consensus       412 --~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                        .+...+..++..++..+..     ....+.++.++..++..++..+-..+..+|..++...|..
T Consensus      1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~ 1494 (1780)
T PLN03076       1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHL 1494 (1780)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhcc
Confidence              1244455555555544422     1134556667777888888889899999999999887765

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.0015  Score=64.41  Aligned_cols=146  Identities=25%  Similarity=0.230  Sum_probs=110.3

Q ss_pred             HHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-------HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh----h
Q 007863          282 VPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-------AIQHILPCVKELSSDSSQHVRSALATVIMGMAPI----L  350 (587)
Q Consensus       282 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~----~  350 (587)
                      -|.+.+.++-.+.+||..|+..+-.+....+++.       ..+.=...+.+++.|+-+.||..|...+..+...    +
T Consensus       176 ~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i  255 (1005)
T KOG1949|consen  176 KPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI  255 (1005)
T ss_pred             hHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            4677778889999999999999888876665542       2233455677889999999999998777665543    3


Q ss_pred             chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          351 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       351 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                      ++....+-+-.++..+-.|...+||.++..++..+...-......+.++|.+.-.+.|...+||.+++..+..+-..
T Consensus       256 P~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v  332 (1005)
T KOG1949|consen  256 PPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV  332 (1005)
T ss_pred             CHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence            44444443444455666788899999999999999866555556678899888889999999999999988877543

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.08  E-value=0.0027  Score=59.10  Aligned_cols=200  Identities=15%  Similarity=0.138  Sum_probs=128.4

Q ss_pred             cCCCChHHHHHHHHHhHHhhhh-hchhh---HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----hhhHHHHHH
Q 007863          367 LKDEFPDVRLNIISKLDQVNQV-IGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLG  438 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~i~~~-~~~~~---~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~  438 (587)
                      +.+.....|..++..+..+... +-.+.   ....+++.+.+.++....+-+..+++.++.++-.+|    .+.+...+.
T Consensus        52 l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~  131 (309)
T PF05004_consen   52 LTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELK  131 (309)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHH
Confidence            3444566666666665555422 11111   123456666666655555666677777877776655    344556788


Q ss_pred             HHHHHHcCCCc--hHHHHHHHHHHHHHHHHhChhh-hhh---chHHHHHhh--h-cC---------CccHHHHHHHHHHH
Q 007863          439 ALCMQWLKDKV--YSIRDAAANNVKRLAEEFGPDW-AMQ---HIVPQVLEM--I-NN---------PHYLYRMTILQAIS  500 (587)
Q Consensus       439 ~~l~~~l~d~~--~~vr~~a~~~l~~l~~~~~~~~-~~~---~~~~~l~~~--l-~~---------~~~~~r~~a~~~l~  500 (587)
                      |.+.+.+.|..  ..+|..++.+|+.++-..+.+. -..   ..+..++..  . .+         ++..+..+|+.+.+
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~  211 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWA  211 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHH
Confidence            88888887765  4677888888887766444431 112   122211111  1 11         23578999999999


Q ss_pred             HhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---H---HHHHhHHHHHHHhcCCCC
Q 007863          501 LLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---S---VVEKSIRPCLVELSEDPD  566 (587)
Q Consensus       501 ~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~---~~~~~i~~~l~~l~~d~~  566 (587)
                      -+...++..   ...+..+|.+..+|..++.+||.+|-++|..+++....   +   ...+.+...+.+|.+|..
T Consensus       212 lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS~  286 (309)
T PF05004_consen  212 LLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDSS  286 (309)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence            998877763   34566889999999999999999999999999876542   1   234567888888877763

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.06  E-value=0.00012  Score=74.13  Aligned_cols=147  Identities=16%  Similarity=0.110  Sum_probs=108.5

Q ss_pred             hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Q 007863          120 QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE  195 (587)
Q Consensus       120 ~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~  195 (587)
                      ..+...+.|.+.+..+......+..-...++++..+.+.+    ..+.++|++.+.+.-++..||-....++..+....+
T Consensus       862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            3455667788777666555556666666666766677654    456788888888888888888888888887766554


Q ss_pred             h--hhhHHHHHHHHHHhcccCc---hhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHH
Q 007863          196 A--AHLKSEIMSIFEELTQDDQ---DSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLY  266 (587)
Q Consensus       196 ~--~~~~~~i~~~l~~l~~d~~---~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~  266 (587)
                      .  ....+.++|.+..+..|.+   -.||..|.+++..+.+..|.   ..+.+.++..+.+.+.|+-..||..|+++=+
T Consensus       942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence            3  4567778888888877765   46888888888888887776   3456678888888888888888888887544

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.03  E-value=0.016  Score=56.36  Aligned_cols=173  Identities=16%  Similarity=0.129  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC
Q 007863          198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE  275 (587)
Q Consensus       198 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~  275 (587)
                      .+++.++..+......++..||..++..+..+.+.+.+  +...+.++..+..-+-|..+.||..|..+|..+-..-+.+
T Consensus        87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne  166 (885)
T COG5218          87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE  166 (885)
T ss_pred             HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence            45556666666777888888999999888888888776  4455667777777777888899999988888765433322


Q ss_pred             CcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHH-HHHHhhhhhhchH
Q 007863          276 PTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA-TVIMGMAPILGKD  353 (587)
Q Consensus       276 ~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~-~~l~~l~~~~~~~  353 (587)
                      .  +.+...+...+ +|++.+||..|+-.+..=          +.-.|++.....|-+...|.... +++..++..... 
T Consensus       167 e--n~~~n~l~~~vqnDPS~EVRr~allni~vd----------nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~l-  233 (885)
T COG5218         167 E--NRIVNLLKDIVQNDPSDEVRRLALLNISVD----------NSTYPCILERARDVSGANRRMVYERCLPRIGDLKSL-  233 (885)
T ss_pred             H--HHHHHHHHHHHhcCcHHHHHHHHHHHeeeC----------CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhc-
Confidence            1  23344444433 688889998887554321          34567788888887766665543 455555432211 


Q ss_pred             HHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863          354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      .....++ .+...+.|.+..|+.++...+..
T Consensus       234 si~kri~-l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         234 SIDKRIL-LMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             cccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence            1122333 67778889989999888887765

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.97  E-value=1.2e-05  Score=53.17  Aligned_cols=51  Identities=25%  Similarity=0.218  Sum_probs=29.3

Q ss_pred             cHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863          529 NIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       529 ~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~  579 (587)
                      .||..|+.+|+.+....+.  ..+...++|.|..++.|+++.||..|..||++
T Consensus         2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            4566666666655433322  24455666666666666666666666666654

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.92  E-value=4e-05  Score=50.64  Aligned_cols=53  Identities=26%  Similarity=0.306  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863          333 QHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (587)
Q Consensus       333 ~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  385 (587)
                      |.||..++.+|+.++...+.  ..+.+.++|.+..+++|+++.||..++.+|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            56778888887776644432  235567777777778877778888887777653

...

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=0.036  Score=60.68  Aligned_cols=145  Identities=14%  Similarity=0.052  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh--hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHH
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC  512 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~  512 (587)
                      ..+.|.+...+...+..+|..|...+|.+....+...+  .+.++...+..+.|....+|..+++....+....+...-.
T Consensus       258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~  337 (1266)
T KOG1525|consen  258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA  337 (1266)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence            34677777888888999999999999998876554433  2456666667788899999999999888877543221111


Q ss_pred             HhHHHHHHhhcCCCCccHHHHHHHHHHHHHh-hhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIP-IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~-~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ..++..+-  ..|.++.+|.....++..+-. .+.-..... ++..+.+.+.|..+.||..|...|.++.+
T Consensus       338 ~~~~~~l~--~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  338 STILLALR--ERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             HHHHHHHH--hhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            11222222  234455555444433332211 111112222 56666677889999999999999988876

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.89  E-value=1.7e-05  Score=44.83  Aligned_cols=30  Identities=30%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863          554 IRPCLVELSEDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       554 i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      ++|.+.++++|++++||..|+++++.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            467777777777777777777777777664

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.89  E-value=0.0099  Score=64.81  Aligned_cols=321  Identities=16%  Similarity=0.106  Sum_probs=166.9

Q ss_pred             hhcCchhHHHHHHHHHHHHHHhhcChh---------hHhhhhHHHHHHhhcC--CCCcchhhHHhh-----hhhhccCC-
Q 007863           94 LCTVEETCVRDKAVESLCRIGSQMREQ---------DVVEHFIPLVKRLAAG--EWFTARVSSCGL-----FHVAYPSA-  156 (587)
Q Consensus        94 l~~~~~~~vr~~a~~~l~~l~~~~~~~---------~~~~~ll~~~~~l~~~--~~~~~r~~a~~l-----~~~~~~~~-  156 (587)
                      ++.++|..||.-..-++..+.+.+.|+         ++...++..+..+.+.  +++..+..-..-     +..++.-. 
T Consensus        58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d  137 (1266)
T KOG1525|consen   58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED  137 (1266)
T ss_pred             HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence            567889999999999999998877653         1222233333333322  233332221111     11122222 


Q ss_pred             CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HhcccCchhHHHHHHHHHHHHhcc
Q 007863          157 PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFE----ELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       157 ~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~----~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      .++....++.++..+..++.+.--......++.+.....  .....++.++.    ..-.+....-+..|..++..++..
T Consensus       138 ~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d--~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~  215 (1266)
T KOG1525|consen  138 CQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED--TVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADN  215 (1266)
T ss_pred             hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhh
Confidence            234667777777777755544322224444444444332  22233333332    222334445555566666665554


Q ss_pred             cChhhhhhchHHHHHHhc-CCC--chHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863          233 LEPQDCVAHILPVIVNFS-QDK--SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR  309 (587)
Q Consensus       233 ~~~~~~~~~l~~~l~~~~-~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                      +.+     .+-..+...+ .+.  -..++...-+.+-.+....+.  ....++|.+..-+...+..+|..|+..+|.+..
T Consensus       216 ~~~-----~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~--ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~  288 (1266)
T KOG1525|consen  216 LED-----TIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQ--LLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFS  288 (1266)
T ss_pred             hch-----hHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh
Confidence            432     2333332222 111  112233333333333322111  012467777776777788999999999999877


Q ss_pred             hhCHHHH--HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH--HHHhHHh
Q 007863          310 ILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI--ISKLDQV  385 (587)
Q Consensus       310 ~~~~~~~--~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a--~~~l~~i  385 (587)
                      ..+....  .+.++..+...+.|.+..||..+.+....+.-.-+  .........+.....|.++.+|...  +-....+
T Consensus       289 ~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~--~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v  366 (1266)
T KOG1525|consen  289 DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP--SIAKASTILLALRERDLDEDVRVRTQVVIVACDV  366 (1266)
T ss_pred             cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc--hhhhHHHHHHHHHhhcCChhhhheeeEEEEEeeh
Confidence            5443322  35677888888899999999999988776653321  1111111122222234444444332  2211111


Q ss_pred             hhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                      ... ....... ++..+.+.+.|..|.||..|+.-+..+.+.
T Consensus       367 ~~~-~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  367 MKF-KLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hHh-hhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            110 0011112 555666677899999999999998888773

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.84  E-value=0.013  Score=52.96  Aligned_cols=228  Identities=14%  Similarity=0.152  Sum_probs=135.4

Q ss_pred             hHhcCCCcHHHHHHHHHHHHhhhhhhchHH----HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh--hchhhHhhhh
Q 007863          325 KELSSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQSL  398 (587)
Q Consensus       325 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~--~~~~~~~~~~  398 (587)
                      ...+++.++.+|..+...|+.+...++++.    ..+.+...+..-+.|. ..+. .++.++..+...  ++.+. ...+
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~-~~l~gl~~L~~~~~~~~~~-~~~i   81 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQ-PALKGLLALVKMKNFSPES-AVKI   81 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHH-HHHHHHHHHHhCcCCChhh-HHHH
Confidence            345566777777777777777766665332    2234555555556443 3333 335555555522  12221 1223


Q ss_pred             HHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChhhhh
Q 007863          399 LPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAM  473 (587)
Q Consensus       399 ~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~  473 (587)
                      +..+.+...  .-....|..+.+.+..+........  ..+.++..+.+.+ +..+++--..+.+.+..+...+....+.
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~  161 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA  161 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            333332211  2335678888888888876643221  1233444444443 5678888888888888888877654445


Q ss_pred             hchHHHHHhhh--------cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          474 QHIVPQVLEMI--------NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       474 ~~~~~~l~~~l--------~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                      +.+...+.-..        +||....|..-..++.....  ....+.+..+|.+++-+.+..+.++.-++++|...++.+
T Consensus       162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence            55555554431        23333344444444444332  223467899999999999999999999999999999999


Q ss_pred             chHHHHHhHHHH
Q 007863          546 DQSVVEKSIRPC  557 (587)
Q Consensus       546 ~~~~~~~~i~~~  557 (587)
                      +.....+++.+.
T Consensus       240 ~~~~~~~~~~~i  251 (262)
T PF14500_consen  240 GADSLSPHWSTI  251 (262)
T ss_pred             CHHHHHHHHHHH
Confidence            987555444443

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=0.00045  Score=66.22  Aligned_cols=158  Identities=20%  Similarity=0.171  Sum_probs=101.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchH
Q 007863          164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL  243 (587)
Q Consensus       164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  243 (587)
                      .-.++.+++.|.++..|...+-+++.-.-.-+.......+++.   -.+|.++.||++|+.+++-++-.     ....+.
T Consensus       517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~~-----D~~~lv  588 (926)
T COG5116         517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCCD-----DRDLLV  588 (926)
T ss_pred             HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEec-----Ccchhh
Confidence            3346667778888888877666655433222232333333332   36778888999888888765421     122333


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHH
Q 007863          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHIL  321 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~  321 (587)
                      ..+.-+..+-++.||...+-+||-.+..-|    .+..+.++..+..|.+.-||++|+-+.+-+.-...++  .....+.
T Consensus       589 ~tvelLs~shN~hVR~g~AvaLGiacag~G----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~  664 (926)
T COG5116         589 GTVELLSESHNFHVRAGVAVALGIACAGTG----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRII  664 (926)
T ss_pred             HHHHHhhhccchhhhhhhHHHhhhhhcCCc----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHH
Confidence            444444455688899988888887665433    3346677778888888889999988888887766655  2234566


Q ss_pred             HHHhHhcCCCcH
Q 007863          322 PCVKELSSDSSQ  333 (587)
Q Consensus       322 ~~l~~~~~d~~~  333 (587)
                      ..+.+.+.|++.
T Consensus       665 k~f~~vI~~Khe  676 (926)
T COG5116         665 KKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHhhhhH
Confidence            666666666543

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.015  Score=57.69  Aligned_cols=144  Identities=23%  Similarity=0.234  Sum_probs=106.3

Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc-------hHHHHHHhcCCChHHHHHHHHHhHHHHHH----h
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD-------VVPAYVRLLRDNEAEVRIAAAGKVTKICR----I  310 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-------l~~~l~~~l~d~~~~vr~~a~~~l~~l~~----~  310 (587)
                      .-|.+.+.++-.|..||..|+..+-.+....+++....+       =...+..++.|+-+.||..|+..+..+..    .
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            446777788889999999999988877766555442221       23456678999999999988877655443    3


Q ss_pred             hCHHHHHHhHHHH-HhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863          311 LNPELAIQHILPC-VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       311 ~~~~~~~~~~~~~-l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  386 (587)
                      +++... .+++.. +-.+..|....||.+..+.+..+...-......++++|.+-..+.|.+..||.++...+..+-
T Consensus       255 iP~~i~-~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  255 IPPTIL-IDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             cCHHHH-HHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            444433 333333 345667888899999999999887665555677889999999999999999999988877654

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.79  E-value=0.062  Score=55.42  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh-
Q 007863          433 FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-  508 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-  508 (587)
                      |...++|++.+.+......+|..-..+|..+........   ....++|.+.+.+.=++..+|..+..++..+....+. 
T Consensus       864 fF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL  943 (1030)
T KOG1967|consen  864 FFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL  943 (1030)
T ss_pred             HHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence            445689999998886677788888888888887665543   2478899999998889999999999999888765443 


Q ss_pred             -HHHHHhHHHHHHhhcCCCC---ccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          509 -EITCSQLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       509 -~~~~~~~l~~l~~~l~d~~---~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                       ......++|.++.+-.|++   ..||..|+++++.+....+..   .+...++..|.+.+.|+.+-||..|+.+=+...
T Consensus       944 ~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~ 1023 (1030)
T KOG1967|consen  944 QTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWY 1023 (1030)
T ss_pred             chHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhh
Confidence             2367889999999888876   579999999999998866654   677889999999999999999999998766554

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=97.75  E-value=0.019  Score=51.98  Aligned_cols=227  Identities=11%  Similarity=0.182  Sum_probs=136.1

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh--hchHHHHHhH
Q 007863          286 VRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPI--LGKDATIEQL  359 (587)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l  359 (587)
                      -..+.++++.+|..|+..|+.+...++++..    ...++..+...+.| ...+.. ++..+..+...  ++.+. ...+
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~-~l~gl~~L~~~~~~~~~~-~~~i   81 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQP-ALKGLLALVKMKNFSPES-AVKI   81 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHH-HHHHHHHHHhCcCCChhh-HHHH
Confidence            3456778888888888888888888776522    23455555555533 223333 35666555522  22222 2233


Q ss_pred             HHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHH
Q 007863          360 LPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFD  434 (587)
Q Consensus       360 ~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~  434 (587)
                      +..+.+-..  .-....|..+...+..+.......  .+...++..+...+. .++|+.=..+.+.+..+...+....+.
T Consensus        82 ~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~  161 (262)
T PF14500_consen   82 LRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFA  161 (262)
T ss_pred             HHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            333332221  224567888888887777654321  122345555555554 578998888888888888877765555


Q ss_pred             HHHHHHHHHHc--------CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc
Q 007863          435 DKLGALCMQWL--------KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM  506 (587)
Q Consensus       435 ~~l~~~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  506 (587)
                      +.+...+.-.+        +|+..--|+.-...|.....  ....|.+..+|.+.+-+.++...++.-++.++..+...+
T Consensus       162 e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y  239 (262)
T PF14500_consen  162 EDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY  239 (262)
T ss_pred             HHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence            66655554432        23322123333333333221  223356789999999999888889999999999999988


Q ss_pred             ChHHHHHhHHH
Q 007863          507 GSEITCSQLLP  517 (587)
Q Consensus       507 ~~~~~~~~~l~  517 (587)
                      |...+.+++.+
T Consensus       240 ~~~~~~~~~~~  250 (262)
T PF14500_consen  240 GADSLSPHWST  250 (262)
T ss_pred             CHHHHHHHHHH
Confidence            87654444433

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.74  E-value=0.006  Score=58.25  Aligned_cols=127  Identities=17%  Similarity=0.214  Sum_probs=88.0

Q ss_pred             CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc------CCccHHHHHHHHHHHHhhcccC--------------
Q 007863          448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN------NPHYLYRMTILQAISLLAPVMG--------------  507 (587)
Q Consensus       448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~~--------------  507 (587)
                      ....-|.+|++.+..+++.++... .+.+...+..+++      ..+|+.+.+|+..++.++....              
T Consensus       223 d~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~  301 (370)
T PF08506_consen  223 DSDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD  301 (370)
T ss_dssp             ---SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred             ccCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence            345679999999999998876552 1222222333332      3479999999999999986431              


Q ss_pred             -hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHH
Q 007863          508 -SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL  577 (587)
Q Consensus       508 -~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al  577 (587)
                       .+.+..+++|.+. .-.+..|.+|..|++.+......++++. ...++|.+..++.+++.-|+..|+.|+
T Consensus       302 v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~-l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  302 VVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ-LLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH-HHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence             1235677788877 3445688999999999999988877654 467999999999999999999998774

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=97.73  E-value=5.9e-05  Score=42.59  Aligned_cols=28  Identities=32%  Similarity=0.428  Sum_probs=15.3

Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863          243 LPVIVNFSQDKSWRVRYMVANQLYELCE  270 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (587)
                      +|.+.++++|++|+||.+|+.+|+.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            4555555555555555555555555543

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0017  Score=62.39  Aligned_cols=228  Identities=11%  Similarity=0.026  Sum_probs=133.9

Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  397 (587)
                      .++...+++++...+.-.-.++.-.++-+.-.-+....   +-.++.-.-..+...+..+....++-+.  +|.++   .
T Consensus       445 ~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s~ea---i~dm~tya~ETqhe~i~Rglgig~aLi~--ygrqe---~  516 (926)
T COG5116         445 REIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWSVEA---IEDMRTYAGETQHERIKRGLGIGFALIL--YGRQE---M  516 (926)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhhhccceeeecCCCHHH---HHHHHHHhcchhhhhHHhhhhhhhhHhh--hhhHH---H
Confidence            34556666666555544444444443333211111111   1111111112233445555444444332  34443   2


Q ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  476 (587)
Q Consensus       398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  476 (587)
                      .-..|.+++.|.++..|...+-.+..---.-|...    ++.-++.. ..|.+.+||.+|+-+||-++-.      ....
T Consensus       517 add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~~----vv~~lLh~avsD~nDDVrRAAViAlGfvc~~------D~~~  586 (926)
T COG5116         517 ADDYINELLYDKDSILRYNGVFSLALAYVGTGNLG----VVSTLLHYAVSDGNDDVRRAAVIALGFVCCD------DRDL  586 (926)
T ss_pred             HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcch----hHhhhheeecccCchHHHHHHHHheeeeEec------Ccch
Confidence            34466778899999999887665543322223322    22233333 6899999999999999987632      1334


Q ss_pred             HHHHHhhh-cCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHh
Q 007863          477 VPQVLEMI-NNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKS  553 (587)
Q Consensus       477 ~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~  553 (587)
                      ++...+++ .+.|+.||...+.+++..+...|..    ..+..+..+..|++.-||+.|+-+++.+.-...++  +-...
T Consensus       587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~  662 (926)
T COG5116         587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKR  662 (926)
T ss_pred             hhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHH
Confidence            55555554 5568999999999999988877654    45556667788999999999999999887665432  33345


Q ss_pred             HHHHHHHhcCCCCc
Q 007863          554 IRPCLVELSEDPDV  567 (587)
Q Consensus       554 i~~~l~~l~~d~~~  567 (587)
                      +...+..+.+|+..
T Consensus       663 I~k~f~~vI~~Khe  676 (926)
T COG5116         663 IIKKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHHHhhhhH
Confidence            55566666666554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=0.0029  Score=65.34  Aligned_cols=226  Identities=15%  Similarity=0.080  Sum_probs=149.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          156 APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       156 ~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      .+++....+++.++.-+    .  |-.|+..|+.+...-+   .-..---|.|...+++++...+.|-.-+-.+.++...
T Consensus       469 ~PPeQLPiVLQVLLSQv----H--RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv  542 (1387)
T KOG1517|consen  469 TPPEQLPIVLQVLLSQV----H--RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAV  542 (1387)
T ss_pred             CChHhcchHHHHHHHHH----H--HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhc
Confidence            34455556666554432    2  4457777777665321   0111223789999999999999998888888877654


Q ss_pred             cCh---hhhhhchHHHHHHhcCC---CchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCC-hHHHHHHHHH
Q 007863          233 LEP---QDCVAHILPVIVNFSQD---KSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDN-EAEVRIAAAG  302 (587)
Q Consensus       233 ~~~---~~~~~~l~~~l~~~~~d---~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~  302 (587)
                      -+.   +-+++..-..+.+.+.+   -+++-|..|+-.|..++..+.-   ......++.+....++|. ++-.|.-++-
T Consensus       543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i  622 (1387)
T KOG1517|consen  543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI  622 (1387)
T ss_pred             CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence            332   11222222233333433   2468899999999999876542   222346788888888885 7999999999


Q ss_pred             hHHHHHHhhCHHHHH---HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh----chH--------------HHHHhHHH
Q 007863          303 KVTKICRILNPELAI---QHILPCVKELSSDSSQHVRSALATVIMGMAPIL----GKD--------------ATIEQLLP  361 (587)
Q Consensus       303 ~l~~l~~~~~~~~~~---~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----~~~--------------~~~~~l~~  361 (587)
                      +|+.+-+.+....+.   ......+..++.|+.+.||.+|+.+|+.+....    ...              ...+...+
T Consensus       623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~  702 (1387)
T KOG1517|consen  623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLII  702 (1387)
T ss_pred             HHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHH
Confidence            999998877654331   234455667788999999999999999987653    110              11223333


Q ss_pred             ----HHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          362 ----IFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       362 ----~l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                          .+..+++|.++-||...+.+++.+..
T Consensus       703 ~~~~~ll~~vsdgsplvr~ev~v~ls~~~~  732 (1387)
T KOG1517|consen  703 KGLMSLLALVSDGSPLVRTEVVVALSHFVV  732 (1387)
T ss_pred             hhHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence                46667788888999988888888763

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.61  E-value=0.035  Score=51.95  Aligned_cols=213  Identities=17%  Similarity=0.169  Sum_probs=117.6

Q ss_pred             HhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh-----------H
Q 007863          365 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-----------F  433 (587)
Q Consensus       365 ~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~-----------~  433 (587)
                      ..+...++.||..++.+++-.+-. +. ......++.+...++..+..+|..+++.+..+.-..|.+.           .
T Consensus        34 P~v~~~~~~vR~~al~cLGl~~Ll-d~-~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~  111 (298)
T PF12719_consen   34 PAVQSSDPAVRELALKCLGLCCLL-DK-ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD  111 (298)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHh-Ch-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence            444555555555555555544321 11 1122334444444444455555555555555554444322           2


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhh-hchHHHHHhhhcCC----ccHHHHHHHHHHHHhhcccC-
Q 007863          434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-QHIVPQVLEMINNP----HYLYRMTILQAISLLAPVMG-  507 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~-  507 (587)
                      ...+..++...+.+.++++|..|++.++++.-.-..  .. ..++..+.-...+|    +...|+.-..++..++.... 
T Consensus       112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i--~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~  189 (298)
T PF12719_consen  112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI--SDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSSPE  189 (298)
T ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCCHH
Confidence            345778888889989999999999999998753211  12 34555555444443    56788877777777765433 


Q ss_pred             -hHHHHHhHHHHHHhhcCCCC----ccHHHHHHHHHHHHHhhhchH--------------HHHHhHHHHHHHhcCCCCcc
Q 007863          508 -SEITCSQLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPCLVELSEDPDVD  568 (587)
Q Consensus       508 -~~~~~~~~l~~l~~~l~d~~----~~vR~~a~~~l~~l~~~~~~~--------------~~~~~i~~~l~~l~~d~~~~  568 (587)
                       .+.+.+.++|.+..+...+.    +.-.....+....++...++.              .........+.++..|+...
T Consensus       190 ~Q~~l~~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~~~~~~~~~~~~~~~~~h~~La~~il~~i~~~~~~~  269 (298)
T PF12719_consen  190 NQERLAEAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDPSKLVKESNQEIQNESVHVDLAIDILNEILSDPEKE  269 (298)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCChhhccCccccccccccHHHHHHHHHHHHHHhccccc
Confidence             23345666777766654432    222222333333333332221              22234566666777666655


Q ss_pred             --HHHHHHHHHHHHH
Q 007863          569 --VRFFATQALQSKD  581 (587)
Q Consensus       569 --Vr~~a~~al~~l~  581 (587)
                        .+..-.++|.++.
T Consensus       270 ~~~~k~~~~~L~~L~  284 (298)
T PF12719_consen  270 KEERKALCKALSKLE  284 (298)
T ss_pred             hHHHHHHHHHHhccc
Confidence              7777777777654

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.60  E-value=0.01  Score=62.45  Aligned_cols=163  Identities=20%  Similarity=0.218  Sum_probs=96.5

Q ss_pred             hhHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhChh----------------hHHHHHHHHHHHHcCCCchHHHHHH
Q 007863          397 SLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLKDKVYSIRDAA  456 (587)
Q Consensus       397 ~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~a  456 (587)
                      .++..+..++..    .+..++..++-.++.+.......                .+.+.+...+.......+...+..+
T Consensus       431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  510 (618)
T PF01347_consen  431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY  510 (618)
T ss_dssp             HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence            344444444432    34567777777777665433211                2234455555555566777889999


Q ss_pred             HHHHHHHHHHhChhhhhhchHHHHHhhhcCC---ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHH
Q 007863          457 ANNVKRLAEEFGPDWAMQHIVPQVLEMINNP---HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFN  533 (587)
Q Consensus       457 ~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~  533 (587)
                      +++||++..        ...++.+...+.+.   ...+|.+|++++..+.... ++...+.++|.+.+-  ..++++|.+
T Consensus       511 LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~~v~~~l~~I~~n~--~e~~EvRia  579 (618)
T PF01347_consen  511 LKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PEKVREILLPIFMNT--TEDPEVRIA  579 (618)
T ss_dssp             HHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HHHHHHHHHHHHH-T--TS-HHHHHH
T ss_pred             HHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cHHHHHHHHHHhcCC--CCChhHHHH
Confidence            999998752        45777777776665   5789999999999886544 223445555555442  236789999


Q ss_pred             HHHHHHHHHhhhchHHHHHhHHHHHHH-hcCCCCccHHHHHHHHH
Q 007863          534 VAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQAL  577 (587)
Q Consensus       534 a~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~Vr~~a~~al  577 (587)
                      |...|-..-+.       ...+..+.. +-.|++..|+......|
T Consensus       580 A~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  580 AYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            98887765333       133444444 56888899988877665

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.19  Score=55.14  Aligned_cols=150  Identities=13%  Similarity=0.162  Sum_probs=94.4

Q ss_pred             hhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHH--hhC-hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863          395 SQSLLPAIVELA-EDRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  470 (587)
Q Consensus       395 ~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                      ...++..+..+. .+.+|++|.++++.+..+.-  .++ .+.-.+.+-..+...+.|.+.+||+.|+.+|..+...-...
T Consensus      1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~ 1603 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQ 1603 (1710)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccc
Confidence            345566665443 45689999999988876542  223 23334678888999999999999999999999888632222


Q ss_pred             hhhhchHHHHHhh-hcCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          471 WAMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       471 ~~~~~~~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                      +..+..-+..... ....+...+.+|...++++.-.++-.  .+..+.+..+-....++ ..++.++-+++...-...
T Consensus      1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            1111112222222 12235667778888899888655432  13344444444445554 788888888888775543

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.56  E-value=0.029  Score=52.51  Aligned_cols=69  Identities=23%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccC
Q 007863          164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE  234 (587)
Q Consensus       164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  234 (587)
                      +-.++....+++++.||+.+.++||-++-.-  ...-...++.+.+.++.+++.+|..|+.++..+.-..+
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld--~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g   96 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLD--KELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHG   96 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            4455567778888889998888888766432  13334445555555555577788888777776655444

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.55  E-value=0.11  Score=51.82  Aligned_cols=149  Identities=11%  Similarity=0.066  Sum_probs=110.1

Q ss_pred             ChhhHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhh
Q 007863          429 GVGFFDDKLGALCMQWLKD----KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLA  503 (587)
Q Consensus       429 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~  503 (587)
                      |.......+.|++.....+    .++.+..+|--+|..+.- +..+ |...-+|.+...+. +|++.+|..|+-.++.+.
T Consensus       885 GeksvLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~-fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~  962 (1128)
T COG5098         885 GEKSVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFE-FCSEHLPLLITSMEKHPIPRIRANAVVGLGDFL  962 (1128)
T ss_pred             chhHHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHH-HHHHHHHHHHHHHhhCCCcceeccceeeccccc
Confidence            4333445566666665544    678888888888887653 3444 34556777776654 899999999999998887


Q ss_pred             cccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863          504 PVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       504 ~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      -.+..  +.++.-..+.+-+.|.+..||.+++.++..+.-.-.  .-...-++.+..++.|+|..+...|..-+-.+++.
T Consensus       963 vcfN~--~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq--~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098         963 VCFNT--TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQ--LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred             eehhh--hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccc--eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence            65532  456677788889999999999999999998864411  11235578888899999999999999888887763

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.42  E-value=0.14  Score=49.67  Aligned_cols=193  Identities=11%  Similarity=0.077  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHH
Q 007863          183 AATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA  262 (587)
Q Consensus       183 a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~  262 (587)
                      .+..+-.+.....+++..++++-++..++.+....++..     ...+. .     .+.....+..++..+++.+...++
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f-----~~~~~-~-----~~~~~~~fl~lL~~~d~~i~~~a~  122 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLF-----HDDAL-L-----KKKTWEPFFNLLNRQDQFIVHMSF  122 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHH-----HHHhh-c-----cccchHHHHHHHcCCchhHHHHHH
Confidence            333444444445556777777777777777753333321     11110 0     012222333366677889999999


Q ss_pred             HHHHHHHHHhCCCCcccc----hHHHHHHhcCCC-hHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCC--cH
Q 007863          263 NQLYELCEAVGPEPTRSD----VVPAYVRLLRDN-EAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDS--SQ  333 (587)
Q Consensus       263 ~~l~~l~~~~~~~~~~~~----l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~--~~  333 (587)
                      ..+..++..-.. .....    +.+.+...++.. +...+..++.++..+...-.-.  .+....++.+.++++..  +.
T Consensus       123 ~iLt~l~~~~~~-~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~  201 (429)
T cd00256         123 SILAKLACFGLA-KMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGF  201 (429)
T ss_pred             HHHHHHHhcCcc-ccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccH
Confidence            998888653222 11112    333444444432 3566677778887776532111  22233455555555332  33


Q ss_pred             HHHHHHHHHHHhhhh--hhchHHHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhh
Q 007863          334 HVRSALATVIMGMAP--ILGKDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQ  387 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~--~~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~  387 (587)
                      .....++-++..+.-  ..........++|.+..++++.. +.|-.-++..+.++..
T Consensus       202 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         202 QLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            444555444443321  11011111346777777776642 3444444555555554

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.40  E-value=0.033  Score=57.83  Aligned_cols=164  Identities=18%  Similarity=0.203  Sum_probs=100.2

Q ss_pred             hhhHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhC--h--------hhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863          396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG--V--------GFFDDKLGALCMQWLKDKVYSIRDAAANNVK  461 (587)
Q Consensus       396 ~~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~--~--------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      ..++..+..++.+    ++..+|..++-.++.+.....  .        +.+.+.+...+.....+.+...+..++++||
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            3566666666654    356688888888888776331  1        1233334444444445566677888888888


Q ss_pred             HHHHHhChhhhhhchHHHHHhhhc-C--CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863          462 RLAEEFGPDWAMQHIVPQVLEMIN-N--PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       462 ~l~~~~~~~~~~~~~~~~l~~~l~-~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (587)
                      ++..        ...++.+...+. +  ....+|.+|+.++..++...... ..+.+++.+.+  .+.++++|..|+..+
T Consensus       472 N~g~--------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n--~~e~~EvRiaA~~~l  540 (574)
T smart00638      472 NAGH--------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLN--RAEPPEVRMAAVLVL  540 (574)
T ss_pred             ccCC--------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcC--CCCChHHHHHHHHHH
Confidence            7653        223334443333 2  34679999999999887644332 44455555533  235788999999888


Q ss_pred             HHHHhhhchHHHHHhHHHHHHH-hcCCCCccHHHHHHHHH
Q 007863          539 QSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQAL  577 (587)
Q Consensus       539 ~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~Vr~~a~~al  577 (587)
                      -..-+..       ..+..+.. +..|++..|+......|
T Consensus       541 m~t~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      541 METKPSV-------ALLQRIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HhcCCCH-------HHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence            7764432       33444444 56788888887766543

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.40  E-value=0.19  Score=57.70  Aligned_cols=246  Identities=12%  Similarity=0.108  Sum_probs=140.1

Q ss_pred             HHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc----
Q 007863          161 KTELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL----  233 (587)
Q Consensus       161 ~~~l~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~----  233 (587)
                      .+.++..+.. +....+..||+.+++++..+......  ..-|..++.++.....++.+.+-..|.+++..+.+..    
T Consensus      1180 QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l 1259 (1780)
T PLN03076       1180 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYI 1259 (1780)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhc
Confidence            3444444444 44556778999888888887765543  2245667777777777777777677777776655431    


Q ss_pred             Ch--hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCC--------------------------CC-----cc-
Q 007863          234 EP--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--------------------------EP-----TR-  278 (587)
Q Consensus       234 ~~--~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~--------------------------~~-----~~-  278 (587)
                      +.  ......++..+..+.+.. +..+-..|+..|..++..+-.                          +.     .. 
T Consensus      1260 ~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076       1260 TETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred             cccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccch
Confidence            11  123445556665555433 344445555555544333200                          00     00 


Q ss_pred             ---cchHHHHH---HhcCCChHHHHHHHHHhHHHHHHhhCHH----HH----HHhHHHHHhHhcC---------------
Q 007863          279 ---SDVVPAYV---RLLRDNEAEVRIAAAGKVTKICRILNPE----LA----IQHILPCVKELSS---------------  329 (587)
Q Consensus       279 ---~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~----~~~~~~~l~~~~~---------------  329 (587)
                         .-.+|++.   .+..|...+||..|+..|-.+....|..    .|    ..-++|.+..+-.               
T Consensus      1340 ~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~ 1419 (1780)
T PLN03076       1340 DHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGV 1419 (1780)
T ss_pred             hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence               11344444   4467899999999999988777766543    22    2234455432210               


Q ss_pred             -------CCcHHHHHHHHHHHHhhhhhhch-----HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hH
Q 007863          330 -------DSSQHVRSALATVIMGMAPILGK-----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LL  394 (587)
Q Consensus       330 -------d~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~  394 (587)
                             +.+.+...++..++..+...+..     ....+.++..+..+...++..+-.....+|..++...|..   +.
T Consensus      1420 ~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~ 1499 (1780)
T PLN03076       1420 DGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEK 1499 (1780)
T ss_pred             cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence                   11223456666666666554432     1234455556666677788888888888988888666532   22


Q ss_pred             hhhhHHHHHHHh
Q 007863          395 SQSLLPAIVELA  406 (587)
Q Consensus       395 ~~~~~~~l~~~~  406 (587)
                      ...++..+.+++
T Consensus      1500 W~~i~~~~~~lf 1511 (1780)
T PLN03076       1500 WLEVVLSLKEAA 1511 (1780)
T ss_pred             HHHHHHHHHHHH
Confidence            345555555544

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.15  Score=56.91  Aligned_cols=234  Identities=14%  Similarity=0.171  Sum_probs=154.5

Q ss_pred             hCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC-CChHHHHHHHHHhHHhhhhh
Q 007863          311 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVI  389 (587)
Q Consensus       311 ~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~i~~~~  389 (587)
                      ++++.+.......+...+..+++..|..+..+++.++...+...+...+...+..-+++ .++..|..-.-+++.+-+..
T Consensus       868 lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv  947 (2067)
T KOG1822|consen  868 LGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV  947 (2067)
T ss_pred             cCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence            34555545556666777788899999999999999999888777666666666555555 45666776666677766655


Q ss_pred             c---hhhHhhhhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHc-CC--CchHHHHHHHHHH
Q 007863          390 G---IDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWL-KD--KVYSIRDAAANNV  460 (587)
Q Consensus       390 ~---~~~~~~~~~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l-~d--~~~~vr~~a~~~l  460 (587)
                      |   ..+....-+..+..+..|++. .|+...+..+..+....++-+.  ...-+..+..++ .+  ...+|+..--+++
T Consensus       948 gs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen  948 GSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred             cCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence            4   444444455677888888765 9999999999888876665431  122233333333 33  3345666555555


Q ss_pred             H------HHHHHhChhh-----------hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhc
Q 007863          461 K------RLAEEFGPDW-----------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINAS  523 (587)
Q Consensus       461 ~------~l~~~~~~~~-----------~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  523 (587)
                      .      .+....|++.           +....+-...-++.+++.-+..+++.++.++.-.-+.....+.+++.+..++
T Consensus      1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred             ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHh
Confidence            5      5665555542           1111222222234555788999999999998766555555778888888888


Q ss_pred             CCCCccHHHHHHHHHHHHHhh
Q 007863          524 KDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       524 ~d~~~~vR~~a~~~l~~l~~~  544 (587)
                      ....--.|......+.++...
T Consensus      1108 ~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred             cchhhhhhhhHHhhhhHHhHH
Confidence            887777888788777777665

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.004  Score=64.43  Aligned_cols=207  Identities=18%  Similarity=0.130  Sum_probs=141.8

Q ss_pred             chhhHHhhhhhhccCCCHH----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHhccc
Q 007863          141 ARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQD  213 (587)
Q Consensus       141 ~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~d  213 (587)
                      .|.-|..+++.+....+=.    .--.++|.++++++++..+.|...+-...++...=+   .+.+++..-..+.+.+.+
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            3666777777765544211    223688999999999999999887777766654311   112222222233334444


Q ss_pred             -C--chhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCCC---CcccchHH
Q 007863          214 -D--QDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE---PTRSDVVP  283 (587)
Q Consensus       214 -~--~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~  283 (587)
                       .  +++-|..|+-.|..+...+..   ......++.+....++|+ .|-.|.-++-+||.+...+...   ........
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe  645 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE  645 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence             2  357899999999999887654   234556788888888885 7999999999999998765431   12344667


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhh----CHH-H-------------HHHhHHH----HHhHhcCCCcHHHHHHHHH
Q 007863          284 AYVRLLRDNEAEVRIAAAGKVTKICRIL----NPE-L-------------AIQHILP----CVKELSSDSSQHVRSALAT  341 (587)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~----~~~-~-------------~~~~~~~----~l~~~~~d~~~~vr~~a~~  341 (587)
                      .+..++.|+-++||.+|+.+|+.+....    ... .             ..+..++    .+..+.+|.++-||....-
T Consensus       646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v  725 (1387)
T KOG1517|consen  646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV  725 (1387)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence            7888899999999999999999998853    111 0             0122222    4556778999999999888


Q ss_pred             HHHhhh
Q 007863          342 VIMGMA  347 (587)
Q Consensus       342 ~l~~l~  347 (587)
                      ++..++
T Consensus       726 ~ls~~~  731 (1387)
T KOG1517|consen  726 ALSHFV  731 (1387)
T ss_pred             HHHHHH
Confidence            888775

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.011  Score=52.81  Aligned_cols=171  Identities=13%  Similarity=0.121  Sum_probs=113.3

Q ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhh-
Q 007863          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM-  473 (587)
Q Consensus       398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-  473 (587)
                      .+......+.+.+|......+..+..++.... +...+.+   ...+.+-+++....|-.+|+.+++.+...++..... 
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444556788899998888888888776443 4444433   334445678888999999999999999988765321 


Q ss_pred             -hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----
Q 007863          474 -QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----  548 (587)
Q Consensus       474 -~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----  548 (587)
                       +.++-.|..-....+.-+|..|-.+|..+.....+.    .+++.+...+.+.++.+|..++.........++-.    
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~  243 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL  243 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence             222222222223345668999999999998877665    46666666678889999999998888877776522    


Q ss_pred             HHHHhHHHHHHHhcCCCCccHHHHH
Q 007863          549 VVEKSIRPCLVELSEDPDVDVRFFA  573 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d~~~~Vr~~a  573 (587)
                      ++.....+.+.+-..|.=+.+|..|
T Consensus       244 ~~~~dl~~a~~~~~~d~Lp~~~~~a  268 (334)
T KOG2933|consen  244 QGSCDLSRAAQEQGSDKLPELREAA  268 (334)
T ss_pred             HhHHHHHHHHHhhhcccccccccch
Confidence            2233444555554555555554333

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.29  E-value=0.036  Score=58.31  Aligned_cols=211  Identities=16%  Similarity=0.141  Sum_probs=105.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc-ChhhhhhchHHHHHHhcC---
Q 007863          176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL-EPQDCVAHILPVIVNFSQ---  251 (587)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~~~---  251 (587)
                      ....|.....+|.....    ......+..    ++....-. -..+...+..+.... .+   ...++..+..++.   
T Consensus       377 ~~~~r~~~lDal~~aGT----~~av~~i~~----~I~~~~~~-~~ea~~~l~~l~~~~~~P---t~e~l~~l~~L~~~~~  444 (618)
T PF01347_consen  377 KEQARKIFLDALPQAGT----NPAVKFIKD----LIKSKKLT-DDEAAQLLASLPFHVRRP---TEELLKELFELAKSPK  444 (618)
T ss_dssp             -HHHHHHHHHHHHHH-S----HHHHHHHHH----HHHTT-S--HHHHHHHHHHHHHT--------HHHHHHHHHHHT-HH
T ss_pred             HHHHHHHHHHHHHHcCC----HHHHHHHHH----HHHcCCCC-HHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHhCcc
Confidence            45667666666665433    222233333    33332111 112444555554444 22   2234444444443   


Q ss_pred             -CCchHHHHHHHHHHHHHHHHhCCC------------CcccchHHHHHHhc----CCChHHHHHHHHHhHHHHHHhhCHH
Q 007863          252 -DKSWRVRYMVANQLYELCEAVGPE------------PTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKICRILNPE  314 (587)
Q Consensus       252 -d~~~~vR~~a~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~  314 (587)
                       ..++.+|.+|+-+++.++......            ...+.+++.+...+    +..+.+.+..++++|++++.     
T Consensus       445 ~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----  519 (618)
T PF01347_consen  445 VKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----  519 (618)
T ss_dssp             HHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------
T ss_pred             ccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----
Confidence             346789999999999887644322            12233444444443    34556777888888888854     


Q ss_pred             HHHHhHHHHHhHhcCCC---cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC--CChHHHHHHHHHhHHhhhhh
Q 007863          315 LAIQHILPCVKELSSDS---SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVI  389 (587)
Q Consensus       315 ~~~~~~~~~l~~~~~d~---~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~  389 (587)
                         +..++.+..++.+.   +..+|.+|+.++..+....+     +.+.+.+..++.|  .+.++|.+|...|-.--+. 
T Consensus       520 ---~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~-  590 (618)
T PF01347_consen  520 ---PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMRCNPS-  590 (618)
T ss_dssp             ---GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----
T ss_pred             ---chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCC-
Confidence               34566666666555   67888888888877754432     2233444444433  3467888887766553222 


Q ss_pred             chhhHhhhhHHHHHHHh-cCCCcHHHHHHH
Q 007863          390 GIDLLSQSLLPAIVELA-EDRHWRVRLAII  418 (587)
Q Consensus       390 ~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~  418 (587)
                            ..++..+...+ .+++..|+..+.
T Consensus       591 ------~~~l~~i~~~l~~E~~~QV~sfv~  614 (618)
T PF01347_consen  591 ------PSVLQRIAQSLWNEPSNQVASFVY  614 (618)
T ss_dssp             ------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred             ------HHHHHHHHHHHhhCchHHHHHHHH
Confidence                  22333333333 455566555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.24  E-value=0.051  Score=56.49  Aligned_cols=151  Identities=15%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             CChHHHHHHHHHhHHhhhhhchh------hHhhhhHHHHHHHh----cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 007863          370 EFPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELA----EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~~~------~~~~~~~~~l~~~~----~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  439 (587)
                      .++.++..++-+++.+......+      ...+.++|.+.+.+    ++.+...+..++++||.++..    .....+.|
T Consensus       409 ~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~----~~i~~l~~  484 (574)
T smart00638      409 KQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHP----SSIKVLEP  484 (574)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCCh----hHHHHHHH
Confidence            35678888888888877533211      11234555554433    345566677777777655431    11233333


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChHHHHHhHHH
Q 007863          440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEITCSQLLP  517 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~  517 (587)
                      .+. .-.+....+|.+|+.+|..+......     .+.+.+...+.+  .+.++|.+|...+...-+   ..    ..+.
T Consensus       485 ~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P---~~----~~l~  551 (574)
T smart00638      485 YLE-GAEPLSTFIRLAAILALRNLAKRDPR-----KVQEVLLPIYLNRAEPPEVRMAAVLVLMETKP---SV----ALLQ  551 (574)
T ss_pred             hcC-CCCCCCHHHHHHHHHHHHHHHHhCch-----HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---CH----HHHH
Confidence            332 12234568999999999988764432     234444444433  357899999988866532   11    2222


Q ss_pred             HHH-hhcCCCCccHHHHHHHH
Q 007863          518 VVI-NASKDRVPNIKFNVAKV  537 (587)
Q Consensus       518 ~l~-~~l~d~~~~vR~~a~~~  537 (587)
                      .+. ..-.+++.+|+......
T Consensus       552 ~ia~~l~~E~~~QV~sfv~S~  572 (574)
T smart00638      552 RIAELLNKEPNLQVASFVYSH  572 (574)
T ss_pred             HHHHHHhhcCcHHHHHHhHHh
Confidence            222 23446778887665543

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.21  E-value=0.43  Score=51.02  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=125.1

Q ss_pred             hchHHHHHhHHHHHHHhcCC----CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHH
Q 007863          350 LGKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLL  424 (587)
Q Consensus       350 ~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l  424 (587)
                      .|++.....+.|.+..+++.    ++|+++.+|.-+|++++..-  ..+-..-+|.+...++ .+++.+|.+++-.++.+
T Consensus       911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS--a~fces~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS--AEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence            35566778899999998853    46999999999999987542  2334567888888776 89999999999999888


Q ss_pred             HHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863          425 ASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       425 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~  504 (587)
                      +-.++.  +.+...+.+...++|++..||+.|+..+..++..--..  .+..++.+...+.|++.++|..|=..+..+..
T Consensus       989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK--VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK--VKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH--hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            866543  23456778889999999999999999999887532111  35567788888999999999999888877765


Q ss_pred             ccChHHHHHhHHHHHHhhcCCC
Q 007863          505 VMGSEITCSQLLPVVINASKDR  526 (587)
Q Consensus       505 ~~~~~~~~~~~l~~l~~~l~d~  526 (587)
                      .-.   ..-.++|.++.-+.|+
T Consensus      1065 k~n---~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1065 KGN---TIYNLLPDILSRLSNG 1083 (1251)
T ss_pred             ccc---chhhhchHHHHhhccC
Confidence            331   2334555555555544

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=97.13  E-value=0.54  Score=50.69  Aligned_cols=169  Identities=14%  Similarity=0.097  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHHHhhChhhHH--HHHHHHHHHHcCCCchHHHHHHHHHHH---HHHHHhChhhhhh--chHHHHHhhhcC
Q 007863          414 RLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVK---RLAEEFGPDWAMQ--HIVPQVLEMINN  486 (587)
Q Consensus       414 r~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~---~l~~~~~~~~~~~--~~~~~l~~~l~~  486 (587)
                      |..+--.+..+++.+|...+.  +++-..+...+.+....- ...+..+.   .+....+.. +..  ..+|.+.....+
T Consensus       750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~-l~~~~~~l~~l~~~~~s  827 (1549)
T KOG0392|consen  750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSF-LHPLGSLLPRLFFFVRS  827 (1549)
T ss_pred             hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhh-hhhhhhhhhHHHHhccc
Confidence            666777788888888876543  333333333332210000 01111221   111112221 222  567778888888


Q ss_pred             CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHH-HHHHHHhhhc--hHHHHHhHHHHHHHhcC
Q 007863          487 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK-VLQSLIPIVD--QSVVEKSIRPCLVELSE  563 (587)
Q Consensus       487 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~-~l~~l~~~~~--~~~~~~~i~~~l~~l~~  563 (587)
                      ....+|.+++.+++.+......+ ....++..+..++.|.+..+|..++. .+..+.....  -.++...+.+.|...++
T Consensus       828 ~~~a~r~~~ar~i~~~~k~~~~e-~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ms  906 (1549)
T KOG0392|consen  828 IHIAVRYAAARCIGTMFKSATRE-TMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMS  906 (1549)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccc
Confidence            89999999999999998754444 34455666667777766666655544 4444443322  23566677888888899


Q ss_pred             CCCccHHHHHHHHHHHHHHHhh
Q 007863          564 DPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       564 d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      |....||..|.+++..+.-+++
T Consensus       907 d~~d~vR~aat~~fa~lip~~~  928 (1549)
T KOG0392|consen  907 DQIDSVREAATKVFAKLIPLLP  928 (1549)
T ss_pred             cchHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999876654

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=97.12  E-value=0.18  Score=45.06  Aligned_cols=195  Identities=14%  Similarity=0.170  Sum_probs=119.0

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH-
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-  248 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-  248 (587)
                      .+.+..++.......+.|..++.+-.  ...+.++..+..+.+.+....+..+.+.+..+...-+..  .+.+.+.+.. 
T Consensus         8 ~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L~~~   83 (234)
T PF12530_consen    8 KLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLLLLL   83 (234)
T ss_pred             HhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHHHHH
Confidence            36666777777777777777766431  445566667777777666666666667777766543321  1333333333 


Q ss_pred             --------hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863          249 --------FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNPELAIQH  319 (587)
Q Consensus       249 --------~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                              .-.+..|+...+.+..+..++...+.  ...++++.+...+ ++.++.++..+++++..++..---+ + ..
T Consensus        84 ~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-~-~s  159 (234)
T PF12530_consen   84 ILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-F-YS  159 (234)
T ss_pred             HhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc-H-HH
Confidence                    12345778888878888888887665  4567899999999 7888999999999999998532111 1 22


Q ss_pred             HHHHHhH-hcCCCcHHHHHHHHHHHHhhhhhh-c---hHHHHHhHHHHHHHhcCCCCh
Q 007863          320 ILPCVKE-LSSDSSQHVRSALATVIMGMAPIL-G---KDATIEQLLPIFLSLLKDEFP  372 (587)
Q Consensus       320 ~~~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~-~---~~~~~~~l~~~l~~~l~d~~~  372 (587)
                      .+..+.+ +-.+..+.+-...+..+.-+...- .   .+.+...++..+.++....+.
T Consensus       160 ~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  160 AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            3333333 234445555555554443332211 1   233455667777777666553

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=97.10  E-value=0.4  Score=48.60  Aligned_cols=324  Identities=14%  Similarity=0.200  Sum_probs=157.2

Q ss_pred             ccCchhHHHHHHHHHHHHhcccChhhh-hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc-
Q 007863          212 QDDQDSVRLLAVEGCGALGKLLEPQDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL-  289 (587)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-  289 (587)
                      +..++.+-..+.++++++.+.+.-.-+ -+..++++...++  ...+|.+|+.|+-.+...--+...+-.++..+.+.+ 
T Consensus       203 n~~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~  280 (980)
T KOG2021|consen  203 NIVNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLE  280 (980)
T ss_pred             ccCCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            333677777788888877766543222 2345666666665  567899998888776642111111112333331111 


Q ss_pred             ------CC--ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHH
Q 007863          290 ------RD--NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP  361 (587)
Q Consensus       290 ------~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  361 (587)
                            .|  .+.++-..    +..+...+|.+.     .....++.+..+..++..+...+             ..++|
T Consensus       281 lfg~~s~dq~~d~df~e~----vskLitg~gvel-----~~i~s~lnseld~~~kqn~l~~l-------------l~~vp  338 (980)
T KOG2021|consen  281 LFGYHSADQMDDLDFWES----VSKLITGFGVEL-----TIIISQLNSELDTLYKQNVLSIL-------------LEIVP  338 (980)
T ss_pred             HHhhhccccccCchHHHH----HHHHHhhcceee-----ehhHhhhhhccCHHHHHHHHHHH-------------HHHHH
Confidence                  11  22333222    222333223221     11111111222333333222221             22456


Q ss_pred             HHHHhcCCCChHHHHHHHHHhHHhhhhhch------h---hHhhhhHHHHHHHhcC------CC----------cHHHHH
Q 007863          362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGI------D---LLSQSLLPAIVELAED------RH----------WRVRLA  416 (587)
Q Consensus       362 ~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~------~---~~~~~~~~~l~~~~~~------~~----------~~vr~~  416 (587)
                      ++.+.+.+...++-......+......+..      .   .+.+.+...+.++..|      .+          .++|+.
T Consensus       339 yllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rkk  418 (980)
T KOG2021|consen  339 YLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKK  418 (980)
T ss_pred             HHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHH
Confidence            677776666555555444443333222211      0   1112222222222211      11          234554


Q ss_pred             HHHHHHHHHHhhChhhHHHHHHHHHHHH---cCCCchHHHHHHHHHHHHHHHHhChhhh------------hhchHHHHH
Q 007863          417 IIEYIPLLASQLGVGFFDDKLGALCMQW---LKDKVYSIRDAAANNVKRLAEEFGPDWA------------MQHIVPQVL  481 (587)
Q Consensus       417 ~~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~~a~~~l~~l~~~~~~~~~------------~~~~~~~l~  481 (587)
                      .--....+ ..+.++.+...+-..+-..   -+.++|..-+.|+..+-.+.+.+..+.+            ....++.+.
T Consensus       419 Lk~fqdti-~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~  497 (980)
T KOG2021|consen  419 LKNFQDTI-VVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLM  497 (980)
T ss_pred             HHHHHHHH-HhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHH
Confidence            33333322 2345555544444333333   3567888889999888887776544321            112233332


Q ss_pred             h--hhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhh------cCCCCccHHHHHHHHHHHHHhhhchH--HHH
Q 007863          482 E--MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA------SKDRVPNIKFNVAKVLQSLIPIVDQS--VVE  551 (587)
Q Consensus       482 ~--~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~------l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~  551 (587)
                      .  ...+++..+....++.+......+..+   ..-+|.++..      +.+.+..||..+.....+.++.+.+.  ++.
T Consensus       498 tsqv~~h~h~lVqLlfmE~ivRY~kff~~e---sq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfi  574 (980)
T KOG2021|consen  498 TSQVLAHDHELVQLLFMELIVRYNKFFSTE---SQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFI  574 (980)
T ss_pred             HcccccCCchHHHHHHHHHHHHHHHHHhcc---hhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            2  234455666666666665544433322   3345555544      44568999999999999998877653  455


Q ss_pred             HhHHHHHHHhcC
Q 007863          552 KSIRPCLVELSE  563 (587)
Q Consensus       552 ~~i~~~l~~l~~  563 (587)
                      +.++..+..+++
T Consensus       575 e~iln~iqdlL~  586 (980)
T KOG2021|consen  575 EEILNKIQDLLH  586 (980)
T ss_pred             HHHHHHHHHHHc
Confidence            666666666553

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.06  E-value=0.32  Score=46.70  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHHhC---------------
Q 007863          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFG---------------  468 (587)
Q Consensus       410 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~---------------  468 (587)
                      ....|.+|...+..+++..+... .+.+...+...+.      ..+|.-+.+|+..++.++....               
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            34567888888888887665432 1222233333332      4678889999999998876431               


Q ss_pred             hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863          469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       469 ~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (587)
                      .+++...++|.+. --.+..+-+|..|++.+..+-..++++ ....++|.+..++.+++..|+.-|+.++
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            1235567777776 223456779999999999998888765 5677999999999999999998888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=97.04  E-value=1.1  Score=52.86  Aligned_cols=514  Identities=16%  Similarity=0.160  Sum_probs=236.9

Q ss_pred             CCchHHHHHHHHHhcccccCcCC--------cchHhhhhhHHHhh-hcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHH
Q 007863           58 DDDDEVLLAMAEELGVFIPYVGG--------LEYANVLLPPLETL-CTVEETCVRDKAVESLCRIGSQMREQDVVEHFIP  128 (587)
Q Consensus        58 ~~~~~v~~~~~~~l~~~~~~~~~--------~~~~~~l~~~l~~l-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~  128 (587)
                      .+++++|..++..+..+..+...        .++....+..+..+ ..++++.+|.+....+.   +...+....+..+.
T Consensus       492 ~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~~lr  568 (2341)
T KOG0891|consen  492 ADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPDLLR  568 (2341)
T ss_pred             cccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCchhHH
Confidence            45778888877666554433221        11133333443333 35778887777666555   22212222222333


Q ss_pred             HHHHhhcCCCCcchhhHHhhhhhhccCCCHHH----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHH
Q 007863          129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEAL----KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSE  202 (587)
Q Consensus       129 ~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~----~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~  202 (587)
                      .......+..+..+..+...++.++...+...    +...+.....+-.+....+....++-+..+......  ..+...
T Consensus       569 ~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~  648 (2341)
T KOG0891|consen  569 LLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGP  648 (2341)
T ss_pred             HHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCc
Confidence            33334455567777777777776655443322    333333333333333333333333333333322211  223333


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCC----C
Q 007863          203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP----E  275 (587)
Q Consensus       203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~----~  275 (587)
                      ++..+...+.+.+..+-..+..+++.++...+.  ....+.+++.+.+.+.|. +..-|.++...++++...-+-    -
T Consensus       649 ~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~  728 (2341)
T KOG0891|consen  649 ILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPY  728 (2341)
T ss_pred             hHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEeccc
Confidence            444444556677777888888888888877763  223346677777766664 556677778899888765442    1


Q ss_pred             CcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHH--HHhHhcCCCcHHH-HHHHHHHHHhhhhhhc
Q 007863          276 PTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQHILP--CVKELSSDSSQHV-RSALATVIMGMAPILG  351 (587)
Q Consensus       276 ~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~l~~~~~d~~~~v-r~~a~~~l~~l~~~~~  351 (587)
                      ...+.++..+...++. ....+|.++++.++..+..- +... .....  .+.......++.. +..+     ..+...+
T Consensus       729 ~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d-~~~~-~~~~~~~~~~~~~~~~k~~~~~~~~-----~~~~~~~  801 (2341)
T KOG0891|consen  729 LDYPELLDILINILKTEQSSTIRREAIRLLGLLGALD-PYKH-KVTEGTSASKISSEQIKSDIDISLL-----ESGVNPS  801 (2341)
T ss_pred             ccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccc-hhHH-HHHhhhhhHhhhhccccccchHHHH-----Hhhhhhh
Confidence            2233455555554443 34678888888888554421 1110 00001  1111111111111 0000     0000000


Q ss_pred             hHHHHH-hHHHHHHHhcCCCChHHHH-HHHHHhHHhhhhhch--hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          352 KDATIE-QLLPIFLSLLKDEFPDVRL-NIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       352 ~~~~~~-~l~~~l~~~l~d~~~~vr~-~a~~~l~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                      ..++.+ .-+-.+...++|+...... ..+.+...+....|.  ..+.+.++|.+........|..+......+....-.
T Consensus       802 ~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~~~~~f~~~q~~~~~~~  881 (2341)
T KOG0891|consen  802 NDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPPNLREFYFQQLTSLVAI  881 (2341)
T ss_pred             hhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCcchhHHHHHhhhhhhhc
Confidence            011110 0111333444444221111 112222222222222  233455666666555554555555443333322221


Q ss_pred             hChhhHHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHh
Q 007863          428 LGVGFFDDKLGALCMQWLKD---KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLL  502 (587)
Q Consensus       428 ~~~~~~~~~l~~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l  502 (587)
                      .... . ..+++.+.....+   .+..+.......+..+...++.++  +....++.........+...|.........+
T Consensus       882 ~~~h-~-~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l~~~~~~~s~~~~~~~~~~~~~  959 (2341)
T KOG0891|consen  882 VRQH-I-RPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTMLTVLQHDKSKDRVVSRKVLQSL  959 (2341)
T ss_pred             cchh-H-hhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchheeecccccchHHHHHHhhHHH
Confidence            1111 0 1122222222222   222333333444444444555443  1122333322222111122232222222222


Q ss_pred             hc-ccChHHHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863          503 AP-VMGSEITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       503 ~~-~~~~~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~  579 (587)
                      -. .-+.+.+..-+.|.+++++.+.  ...+|..+..+++.+........+...+...+...+.-. ++.+......+..
T Consensus       960 ~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~ 1038 (2341)
T KOG0891|consen  960 QKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQVDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIA 1038 (2341)
T ss_pred             HhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHH
Confidence            21 1122334556777888888776  677888888888888877766666666655555544444 6777766666655


Q ss_pred             HHHHh
Q 007863          580 KDQVM  584 (587)
Q Consensus       580 l~~~~  584 (587)
                      +..-+
T Consensus      1039 l~~~~ 1043 (2341)
T KOG0891|consen 1039 LVKQL 1043 (2341)
T ss_pred             HHHhh
Confidence            55443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.01  E-value=0.38  Score=46.74  Aligned_cols=194  Identities=13%  Similarity=0.120  Sum_probs=99.7

Q ss_pred             HHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 007863          106 AVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAAT  185 (587)
Q Consensus       106 a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~  185 (587)
                      .+..+..+....+.+++.++++-++.++..++...+     ..+..... .++..   +.+++. ++..++..+...++.
T Consensus        54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~-----~~f~~~~~-~~~~~---~~~fl~-lL~~~d~~i~~~a~~  123 (429)
T cd00256          54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRV-----KLFHDDAL-LKKKT---WEPFFN-LLNRQDQFIVHMSFS  123 (429)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHH-----HHHHHHhh-ccccc---hHHHHH-HHcCCchhHHHHHHH
Confidence            344455555556666666677666666665532111     11111111 11111   223332 455677888999999


Q ss_pred             HHHHHHHHHhh---hhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccCh-h-hhhhchHHHHHHhcCCC--chHH
Q 007863          186 NLGKFAATVEA---AHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP-Q-DCVAHILPVIVNFSQDK--SWRV  257 (587)
Q Consensus       186 ~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~~~d~--~~~v  257 (587)
                      .+..++..-..   ....+.+.+.+...+... +...+..++.++..+...-.- . ......++.+...++..  +...
T Consensus       124 iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql  203 (429)
T cd00256         124 ILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQL  203 (429)
T ss_pred             HHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHH
Confidence            98888754221   122333445555555433 355566777888776654221 1 11223455555555432  4466


Q ss_pred             HHHHHHHHHHHHHHhC--CCCcccchHHHHHHhcCCCh-HHHHHHHHHhHHHHHH
Q 007863          258 RYMVANQLYELCEAVG--PEPTRSDVVPAYVRLLRDNE-AEVRIAAAGKVTKICR  309 (587)
Q Consensus       258 R~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~  309 (587)
                      ...++-++.-+...-.  .......+++.+...+++.. ..|-+-++.+|.++..
T Consensus       204 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         204 QYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            6666666655432111  11123468888888887653 3344555555666555

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.99  E-value=0.013  Score=49.21  Aligned_cols=67  Identities=18%  Similarity=0.137  Sum_probs=49.0

Q ss_pred             HHHhhcCC-CCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863          518 VVINASKD-RVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       518 ~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                      .+...+.. .+..+-...++++..++...+.+    .+...++..+..+..+.|++||..+.-+++.+.+..
T Consensus       105 ~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  105 GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            33333443 46777778899999988776654    445566666777788899999999999999887653

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.063  Score=48.16  Aligned_cols=165  Identities=16%  Similarity=0.157  Sum_probs=78.5

Q ss_pred             HhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHH
Q 007863          287 RLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFL  364 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  364 (587)
                      ..+.+.+|+....++..+..++..-...  .....++..+.+-+++....|-.+|+.+++.+....+.... +.+-..+.
T Consensus        95 ~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~~ld~lv~  173 (334)
T KOG2933|consen   95 KKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-QELDDLVT  173 (334)
T ss_pred             HHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3345556666666665555555433221  11233444444555555556666666666666554443221 12222222


Q ss_pred             Hhc---CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh----hHHHHH
Q 007863          365 SLL---KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----FFDDKL  437 (587)
Q Consensus       365 ~~l---~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~----~~~~~l  437 (587)
                      .++   .+.+..||..+-.+|..+.....+.    .+++.+.....+.++++|..+...+......+|..    ++...+
T Consensus       174 ~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl  249 (334)
T KOG2933|consen  174 QLLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDL  249 (334)
T ss_pred             HHHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHH
Confidence            222   2334556666666666666555543    33444444455666666666655554444433311    112233


Q ss_pred             HHHHHHHcCCCchHHHHHH
Q 007863          438 GALCMQWLKDKVYSIRDAA  456 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a  456 (587)
                      .+.+-+-..|.-+.+|++|
T Consensus       250 ~~a~~~~~~d~Lp~~~~~a  268 (334)
T KOG2933|consen  250 SRAAQEQGSDKLPELREAA  268 (334)
T ss_pred             HHHHHhhhcccccccccch
Confidence            3444444455555555443

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.94  E-value=0.52  Score=47.25  Aligned_cols=255  Identities=11%  Similarity=0.089  Sum_probs=121.1

Q ss_pred             HhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhc-hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHh
Q 007863          318 QHILPCVKELSSDS-SQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS  395 (587)
Q Consensus       318 ~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~  395 (587)
                      ..++..+..++... +...-..++..+..+..+.. +......++..+....+-.  .....+.+.+..+++.-.    .
T Consensus       175 ~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~----g  248 (464)
T PF11864_consen  175 SSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHL----G  248 (464)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCcc----H
Confidence            44455555444322 22222455555555543221 2233344555555543332  566667777777764321    1


Q ss_pred             hhhHHHHHHHh--cC----CCcHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 007863          396 QSLLPAIVELA--ED----RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLKDKVYSIRDAAANNVKRL  463 (587)
Q Consensus       396 ~~~~~~l~~~~--~~----~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  463 (587)
                      ...+..+...+  .+    ++..+-..|+..++.+.-..+.+.+      ...++|.+...++..+..|-...+..+..+
T Consensus       249 ~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~l  328 (464)
T PF11864_consen  249 HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRL  328 (464)
T ss_pred             HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHH
Confidence            34556666666  22    3455556777777776654422211      134888888888877777766777777777


Q ss_pred             H-HHhChhhh------hhchHHHHHhhhcC-Cc--------cHHHHHHHH---HHHHhhcccChHHHHHhHHHHHHhhcC
Q 007863          464 A-EEFGPDWA------MQHIVPQVLEMINN-PH--------YLYRMTILQ---AISLLAPVMGSEITCSQLLPVVINASK  524 (587)
Q Consensus       464 ~-~~~~~~~~------~~~~~~~l~~~l~~-~~--------~~~r~~a~~---~l~~l~~~~~~~~~~~~~l~~l~~~l~  524 (587)
                      . ..++....      .-.+++.+...... +.        ..++.....   .+..+.+.....--.+.++..+.+...
T Consensus       329 l~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~~g~~~~~~~f~~~~~~  408 (464)
T PF11864_consen  329 LDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDFNGPKDKLFNFFERVHS  408 (464)
T ss_pred             HhHhhhhhhcccCchHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCcCccHHHHHHHHHHHhc
Confidence            6 55544310      01122222222111 11        112221111   122222211100013455555555554


Q ss_pred             CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhc-CCCCccHHHHHHHHHHH
Q 007863          525 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQS  579 (587)
Q Consensus       525 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al~~  579 (587)
                      ...+......+..=...+.. ..+.....+...+..+. .+..++||..|.+++..
T Consensus       409 ~lp~s~~~~vl~~~~~~~~P-s~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e  463 (464)
T PF11864_consen  409 YLPDSSALLVLFYEERSCSP-SNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEE  463 (464)
T ss_pred             cCCHHHHHHHHHHHhcccCC-CChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhh
Confidence            44443333333111111111 11234444555555544 77888999999888764

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.90  E-value=0.4  Score=51.26  Aligned_cols=128  Identities=13%  Similarity=0.084  Sum_probs=95.4

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---c-ChHHHHHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---M-GSEITCSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~-~~~~~~~~~l~~l~  520 (587)
                      .+|-.+.+|...+..||.++..+..-++.+..+..+--.+.|.+..||..++.+|..+...   . +.+.|.+++-..++
T Consensus       296 YRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIV  375 (1048)
T KOG2011|consen  296 YRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIV  375 (1048)
T ss_pred             cccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence            4788999999999999999999888887888888888889999999999999999998875   2 22446667777777


Q ss_pred             hhc-CCCCccHHHHHHHHHHHHHh--hhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHH
Q 007863          521 NAS-KDRVPNIKFNVAKVLQSLIP--IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL  577 (587)
Q Consensus       521 ~~l-~d~~~~vR~~a~~~l~~l~~--~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al  577 (587)
                      .+. .|.+..||...+..+.....  .+..     .-+-.+..+.-|.++.|+..|..-+
T Consensus       376 eMadrd~~~~Vrav~L~~~~~~~~~g~L~d-----~di~~Vy~Li~d~~r~~~~aa~~fl  430 (1048)
T KOG2011|consen  376 EMADRDRNVSVRAVGLVLCLLLSSSGLLSD-----KDILIVYSLIYDSNRRVAVAAGEFL  430 (1048)
T ss_pred             HHHhhhcchhHHHHHHHHHHHHhcccccCh-----hHHHHHHHHHhccCcchHHHHHHHH
Confidence            776 56677888777776655532  2222     2233446677788888887776554

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.83  E-value=0.5  Score=46.36  Aligned_cols=254  Identities=11%  Similarity=0.074  Sum_probs=138.9

Q ss_pred             cCCCcHHHHHHHHHHHHhhhhhhchHH----HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHH
Q 007863          328 SSDSSQHVRSALATVIMGMAPILGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPA  401 (587)
Q Consensus       328 ~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~  401 (587)
                      ..+++|.--..+.+.+..+......+.    +...++-.+..++..+++.-|......+..+.......  .+...+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            345667666666666666655544322    34456667788888888888888888888877654321  223334444


Q ss_pred             HHHHhc-CCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhhhhhch
Q 007863          402 IVELAE-DRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWAMQHI  476 (587)
Q Consensus       402 l~~~~~-~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~  476 (587)
                      +.+.+. .....--..+++.++.+.+.+.   .+.....+...++.+.+.+.. .....-..++..++..-. . ....+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-~-l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-S-LAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-G-GHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-h-hHHHH
Confidence            444444 2334444567777777776554   222233444555555554433 234555555555554311 1 23444


Q ss_pred             HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH---HHhHHHHHHhhcCCCCccHHHHHHHHHHHH--Hhhhch--HH
Q 007863          477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKFNVAKVLQSL--IPIVDQ--SV  549 (587)
Q Consensus       477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l--~~~~~~--~~  549 (587)
                      +..+.+.---.+.......+.-+..+...++++.+   ...+...+..++++++..|-..|+..+..=  ...+..  ..
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~  336 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRV  336 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHH
Confidence            55555443334566667788888888887776654   445666777788888888888887765322  222211  12


Q ss_pred             HHHhHHHHHHHhcC-CCCccHHHHHHHHHHHHHHH
Q 007863          550 VEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       550 ~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~l~~~  583 (587)
                      +...+.|.|.+... -=+..||..|..++..+.++
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~  371 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM  371 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            22334444443222 22557999999998887764

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.79  E-value=0.084  Score=56.37  Aligned_cols=223  Identities=18%  Similarity=0.157  Sum_probs=131.0

Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH------------hcCCC-hHHHHHHHHHhHHHHH
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR------------LLRDN-EAEVRIAAAGKVTKIC  308 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~------------~l~d~-~~~vr~~a~~~l~~l~  308 (587)
                      ++..+...+-+++|.+|..++.++..+...-+.+.....+-..+..            +..|+ -.-||++++++|+.+.
T Consensus        78 ~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~l  157 (1549)
T KOG0392|consen   78 FLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAYL  157 (1549)
T ss_pred             HHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH
Confidence            4444455555778888888888777777665544332221111111            12222 3579999999999999


Q ss_pred             HhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863          309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       309 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  386 (587)
                      ++.....+ ...+..+.+++.-++|.+|..-+..+........  -......+++.+...+.|.+.+||..++..+..+.
T Consensus       158 ~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~  236 (1549)
T KOG0392|consen  158 KHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQFLVPAP  236 (1549)
T ss_pred             HhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHHHhhhhh
Confidence            98776543 6677788888888899999887666554433111  11344567788889999999999999998887776


Q ss_pred             hhhchhhH---hhhhHHHHHHHh---cCCCcH---HHHHHHHHHHHH--HHhhChhhHHHHHHHHHHHHcCCCchHHHHH
Q 007863          387 QVIGIDLL---SQSLLPAIVELA---EDRHWR---VRLAIIEYIPLL--ASQLGVGFFDDKLGALCMQWLKDKVYSIRDA  455 (587)
Q Consensus       387 ~~~~~~~~---~~~~~~~l~~~~---~~~~~~---vr~~~~~~l~~l--~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~  455 (587)
                      ... .+..   ...++..+...+   .|-.|.   .+....+.+...  ............++|-+..++...-..+|.+
T Consensus       237 s~~-v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a  315 (1549)
T KOG0392|consen  237 SIQ-VKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRA  315 (1549)
T ss_pred             HHH-HhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH
Confidence            554 1111   112222222221   222222   222211111111  0000011112345666667777778889999


Q ss_pred             HHHHHHHHHHH
Q 007863          456 AANNVKRLAEE  466 (587)
Q Consensus       456 a~~~l~~l~~~  466 (587)
                      ++..+..+.+.
T Consensus       316 ~l~~l~~lle~  326 (1549)
T KOG0392|consen  316 ALETLAMLLEA  326 (1549)
T ss_pred             HHHHHHHHHhc
Confidence            99988888764

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.65  E-value=0.46  Score=42.54  Aligned_cols=133  Identities=14%  Similarity=0.086  Sum_probs=83.4

Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhH--
Q 007863          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE--  326 (587)
Q Consensus       249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~--  326 (587)
                      ..+..+++......+.|+.++..-.  .....++..+..+.+.+..+.+..+.+.+..+.+.-+.- + +.+-+.+..  
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~-f-~~L~~~L~~~~   84 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH-F-PFLQPLLLLLI   84 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH-H-HHHHHHHHHHH
Confidence            5556677777777777777765421  223345666666666666666666666666665542221 1 122222221  


Q ss_pred             -------hcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc-CCCChHHHHHHHHHhHHhhh
Q 007863          327 -------LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       327 -------~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~  387 (587)
                             .-.+..|....+.+.++..++...+.  ....+++.+..++ ++.++.++..++.++..+++
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~  151 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE  151 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence                   11244577777777777777766554  4456778888888 78888888888889888884

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=96.60  E-value=0.075  Score=44.77  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=32.7

Q ss_pred             CChHHHHHHHHHhHHhhhhhc----hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          370 EFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~----~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                      .+..+-...++++..++....    +..+...++..+..++.+.+..+|..++.+++.+...
T Consensus       114 ~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~  175 (182)
T PF13251_consen  114 KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV  175 (182)
T ss_pred             cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence            345555555555555554332    2334455666666666666666666666666666543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.59  E-value=0.016  Score=48.05  Aligned_cols=140  Identities=16%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             hhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHHh-h
Q 007863          239 VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRI-L  311 (587)
Q Consensus       239 ~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~-~  311 (587)
                      .+.+++.+..+++. .+|.+|+.+++++|.++..-+      ...........     +.+........   ...... .
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP------~~~k~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~   78 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDP------YKHKSIQKSLDSKSSENSNDESTDISL---PMMGISPS   78 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc------HHHhcccccCCccccccccccchhhHH---hhccCCCc
Confidence            56677777777654 478999999999987764211      00000000000     00111111111   000000 1


Q ss_pred             CHHHHHHhHHHHHhHhcCCCcH-HHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          312 NPELAIQHILPCVKELSSDSSQ-HVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       312 ~~~~~~~~~~~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                      ..+.+...++..+.+.++|++- .-+.+++.++..+.+..|.  -.+.++++|.+...++..++..|......|+.+..
T Consensus        79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            1233334455666666666652 3334555666555544442  33566777777777776666666666666665543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.4  Score=44.35  Aligned_cols=174  Identities=13%  Similarity=0.020  Sum_probs=110.6

Q ss_pred             CCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhh
Q 007863          409 RHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEM  483 (587)
Q Consensus       409 ~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~  483 (587)
                      .+.+-+..++..+..++..+....-  .-..++.++..+++.+..+|..|+..++..++......   +....++.+...
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            3556677777777777776643221  11223444459999999999999999999998654421   234466677666


Q ss_pred             hc-CCccHHHHHHHHHHHHhhcccChHH--H-HHhHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhch--HHHHHhHH
Q 007863          484 IN-NPHYLYRMTILQAISLLAPVMGSEI--T-CSQLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIR  555 (587)
Q Consensus       484 l~-~~~~~~r~~a~~~l~~l~~~~~~~~--~-~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~  555 (587)
                      +. +.+..+|..|+.+++.+..+..+..  | .-.=...+.+.+++  .+...+..++..++.+...-..  +.+....+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            54 4556789999999999998665431  2 11224456666666  4666778888888888765332  23333333


Q ss_pred             HHHH-HhcCCCCccHHHHHHHHHHHHHH
Q 007863          556 PCLV-ELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       556 ~~l~-~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      +... .+..--+.+++..+..++-++..
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            3333 35555677777777776655443

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=96.56  E-value=1  Score=45.41  Aligned_cols=105  Identities=12%  Similarity=0.050  Sum_probs=86.2

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-h
Q 007863          166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH--------LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-Q  236 (587)
Q Consensus       166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~  236 (587)
                      ..+..++.+.+...|-+..+.+++++.......        ....++..+.+-+.|.+|-+|..|+..+.++.+.-.. .
T Consensus       302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~  381 (1128)
T COG5098         302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV  381 (1128)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence            456678888999999999999999988765422        3345677888889999999999999999999876554 3


Q ss_pred             hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (587)
                      .....+.......++|.+..||+.|++.+..+..
T Consensus       382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~  415 (1128)
T COG5098         382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM  415 (1128)
T ss_pred             chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            3456788889999999999999999999988754

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.56  E-value=0.083  Score=44.10  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHh---hcccC
Q 007863          434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLL---APVMG  507 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l---~~~~~  507 (587)
                      ...++|++...+.+....-|--|.+.+..+...-+.+.   +..++++.+.+.++.++..+..+++.++..+   ...+|
T Consensus        36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG  115 (183)
T PF10274_consen   36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG  115 (183)
T ss_pred             hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence            46789999999999999999999999999998833332   3466777778889999999999999999999   66777


Q ss_pred             hH--HHHHhHHHHHHhhcCC-----------CCccHHHHHHHHHHHHHhhhchH
Q 007863          508 SE--ITCSQLLPVVINASKD-----------RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       508 ~~--~~~~~~l~~l~~~l~d-----------~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      +.  .+..+++|.+.-+.+.           ...+++...-.+|..+-..-|++
T Consensus       116 ~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  116 EALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            65  4678888877733221           24566777777777666665554

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=96.52  E-value=0.7  Score=46.52  Aligned_cols=149  Identities=16%  Similarity=0.083  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHH--------HHHHHHHhcc--cCchhHHHHHHHHH
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSE--------IMSIFEELTQ--DDQDSVRLLAVEGC  226 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~--------i~~~l~~l~~--d~~~~vr~~a~~~l  226 (587)
                      +.+.+++++..-.++.+..+|-.++..+.++.+.++-   +.+.+.        .+..+.+-++  +.++.+...++..+
T Consensus       243 ~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~  322 (993)
T COG5234         243 YLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFF  322 (993)
T ss_pred             HHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHH
Confidence            6677778888888888999999999999999988764   222221        1111222111  12344555555444


Q ss_pred             HHHhcccChhhhhhchHHHHHHhcCCC--------chHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHH-hcCCChH
Q 007863          227 GALGKLLEPQDCVAHILPVIVNFSQDK--------SWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVR-LLRDNEA  294 (587)
Q Consensus       227 ~~l~~~~~~~~~~~~l~~~l~~~~~d~--------~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~-~l~d~~~  294 (587)
                      + +++..+-+...-.+.|.+.+.++-+        -..+|.+++-.+..+.....+....   ..+...+.+ .+-|++-
T Consensus       323 a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel  401 (993)
T COG5234         323 A-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPEL  401 (993)
T ss_pred             H-HhhccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchh
Confidence            4 4443322211112455555544422        2357777776666555442222211   124444444 6789999


Q ss_pred             HHHHHHHHhHHHHHH
Q 007863          295 EVRIAAAGKVTKICR  309 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~  309 (587)
                      .+|.+|..++-++..
T Consensus       402 ~vRr~a~Aal~E~iG  416 (993)
T COG5234         402 NVRRAATAALFEVIG  416 (993)
T ss_pred             hhhhHHHHHHHHHhc
Confidence            999999888766544

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.51  E-value=0.94  Score=44.46  Aligned_cols=251  Identities=10%  Similarity=0.102  Sum_probs=132.0

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-H-HHHHhHHHH
Q 007863          250 SQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-E-LAIQHILPC  323 (587)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~~~~~  323 (587)
                      ..+++|.--..+.+.|..+........    ....++..+..+++.+|++-|......+-.+...+.. . .....+...
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            346778777777777777776544332    3446778888889999999999888888886654432 1 222333444


Q ss_pred             HhHhcCC-CcHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863          324 VKELSSD-SSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       324 l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~~~~~~~  398 (587)
                      +.+...+ ....--..+++.++.+...+.   ++.....+...+..+.+... ..-......++..+++.-  ..+...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence            4444432 233334455667777766554   34444445555666665553 222444444554444321  1112234


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHH---HHHHHHHHHcCCCchHHHHHHHHHHHH--HHHHhChhhhh
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKDKVYSIRDAAANNVKR--LAEEFGPDWAM  473 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~--l~~~~~~~~~~  473 (587)
                      +..+.+..--.+..-....+..+..+...++++.+..   .+...+-.++.++...|-+.|+..+..  +...+..  ..
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~--~~  334 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ--NS  334 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC--TH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh--Ch
Confidence            4444444444555556667777777777777666543   344445566788888888888766532  1222111  12


Q ss_pred             hchHHHHHhhhcC---C--ccHHHHHHHHHHHHhhc
Q 007863          474 QHIVPQVLEMINN---P--HYLYRMTILQAISLLAP  504 (587)
Q Consensus       474 ~~~~~~l~~~l~~---~--~~~~r~~a~~~l~~l~~  504 (587)
                      ..++|.+...+..   .  +..+|..+..++..+.+
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3344444443211   1  34566666666665554

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=1.2  Score=45.65  Aligned_cols=175  Identities=12%  Similarity=0.168  Sum_probs=112.4

Q ss_pred             cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhC--hhhhh---hchHHHHHhhh
Q 007863          411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFG--PDWAM---QHIVPQVLEMI  484 (587)
Q Consensus       411 ~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~--~~~~~---~~~~~~l~~~l  484 (587)
                      .-+|..++..++.....--+....+.+-..+.++++|. +..||-+++.++..++..+.  .+.|.   +.+.-.+++++
T Consensus       501 RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll  580 (978)
T KOG1993|consen  501 RIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLL  580 (978)
T ss_pred             hHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHH
Confidence            34677888888888775445555667777888999998 77899999999999987543  22222   22222333333


Q ss_pred             cC-CccHHHHHHHHHHHHhhcccChH--HHH---HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHH
Q 007863          485 NN-PHYLYRMTILQAISLLAPVMGSE--ITC---SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRP  556 (587)
Q Consensus       485 ~~-~~~~~r~~a~~~l~~l~~~~~~~--~~~---~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~  556 (587)
                      .. .....|...+..++.+....+..  ++.   -.++|.+-+-.+ ..+-.|.+.+.++.+++..++..  .+..-+.|
T Consensus       581 ~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~p  659 (978)
T KOG1993|consen  581 KAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYP  659 (978)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHH
Confidence            22 34557888888888877655442  222   234444444333 57889999999999999988764  44455666


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          557 CLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       557 ~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      ++....+-..|+-......++.-..-.+++
T Consensus       660 VIel~~D~~sP~hv~L~EDgmeLW~~~L~n  689 (978)
T KOG1993|consen  660 VIELSTDPSSPEHVYLLEDGMELWLTTLMN  689 (978)
T ss_pred             HHHHhcCCCCCceeehhhhHHHHHHHHHhc
Confidence            665554444556555555555555555443

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.49  E-value=0.055  Score=39.75  Aligned_cols=80  Identities=19%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHH
Q 007863          403 VELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL  481 (587)
Q Consensus       403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  481 (587)
                      ...+.|+...+|..++..+..+...-. .....+.++.+++..++|+++-|=-.|++++..++...+     +.++|.+.
T Consensus         9 l~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~~L~   83 (92)
T PF10363_consen    9 LSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLPILL   83 (92)
T ss_pred             HHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHHHHH
Confidence            334566666677777777766665544 333356778888888888888888888888888887654     33666666


Q ss_pred             hhhcCC
Q 007863          482 EMINNP  487 (587)
Q Consensus       482 ~~l~~~  487 (587)
                      +...++
T Consensus        84 ~~y~~~   89 (92)
T PF10363_consen   84 DEYADP   89 (92)
T ss_pred             HHHhCc
Confidence            655443

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=1.2  Score=45.33  Aligned_cols=141  Identities=9%  Similarity=0.057  Sum_probs=90.5

Q ss_pred             hhhhHHHHHHHhc-----C---CCcHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863          395 SQSLLPAIVELAE-----D---RHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKDKVYSIRDAAANNVK  461 (587)
Q Consensus       395 ~~~~~~~l~~~~~-----~---~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      .+.+++.+.+.+.     +   .+.+-...+++.+..+...+..     ..+...+++.++..++++.--.|..|+..+.
T Consensus       406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is  485 (970)
T COG5656         406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS  485 (970)
T ss_pred             hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence            3667777777662     1   3455566777777777663321     2234456777888889999999999999999


Q ss_pred             HHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-HHHHhHHH---HHHhhcCCCCccHHHHHH
Q 007863          462 RLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCSQLLP---VVINASKDRVPNIKFNVA  535 (587)
Q Consensus       462 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~---~l~~~l~d~~~~vR~~a~  535 (587)
                      .+...+........+.....+.+++.+..++..|+.++.-+...-... .+..++-+   .++.+.++-+-++=..++
T Consensus       486 ~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM  563 (970)
T COG5656         486 TIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM  563 (970)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence            987666655444556666666778888899999999998887643322 23334333   444444443333333333

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.45  E-value=0.98  Score=48.46  Aligned_cols=128  Identities=16%  Similarity=0.114  Sum_probs=90.9

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh---C-hhhhhhchHHHHHh
Q 007863          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF---G-PDWAMQHIVPQVLE  482 (587)
Q Consensus       407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~~~~~l~~  482 (587)
                      .|-.+.+|..+++.++.++..++.-++.+.++..+--.|.|.+..||...+++|..+...-   + -+.|.+.+-..+.+
T Consensus       297 RDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe  376 (1048)
T KOG2011|consen  297 RDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE  376 (1048)
T ss_pred             ccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence            5678899999999999999988777777777777767789999999999999999988751   1 12245566666667


Q ss_pred             hh-cCCccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHH
Q 007863          483 MI-NNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       483 ~l-~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  539 (587)
                      +. .|-+..||..++..+.....  .+..     .=+-.+..+.-|.++.++.++...+.
T Consensus       377 Madrd~~~~Vrav~L~~~~~~~~~g~L~d-----~di~~Vy~Li~d~~r~~~~aa~~fl~  431 (1048)
T KOG2011|consen  377 MADRDRNVSVRAVGLVLCLLLSSSGLLSD-----KDILIVYSLIYDSNRRVAVAAGEFLY  431 (1048)
T ss_pred             HHhhhcchhHHHHHHHHHHHHhcccccCh-----hHHHHHHHHHhccCcchHHHHHHHHH
Confidence            66 55677788888776655532  2221     12234455666778888887777664

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.44  E-value=0.02  Score=47.54  Aligned_cols=74  Identities=12%  Similarity=0.265  Sum_probs=46.9

Q ss_pred             hhhhhchHHHHHhhhcCCcc-HHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863          470 DWAMQHIVPQVLEMINNPHY-LYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       470 ~~~~~~~~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~  543 (587)
                      +++....+..+...++|+.. ..+..++.++..+.+..|.  -.+.+.++|.++..+....+..|.....-|+.+..
T Consensus        81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            34455566677777777643 3444566666666654443  34677788888877776666777777666666543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=96.41  E-value=0.049  Score=40.02  Aligned_cols=79  Identities=20%  Similarity=0.220  Sum_probs=50.6

Q ss_pred             HHHHhhhcCCccHHHHHHHHHHHHhhcccC-hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHH
Q 007863          478 PQVLEMINNPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP  556 (587)
Q Consensus       478 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  556 (587)
                      ......+.||...+|..++..+..+...-. .....+.++..+...++|+++-|=.+|++++..++...+     +.++|
T Consensus         6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p-----~~vl~   80 (92)
T PF10363_consen    6 QEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP-----DEVLP   80 (92)
T ss_pred             HHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh-----HHHHH
Confidence            334455667777777777777777766544 333356677777777777777777777777777776643     23555


Q ss_pred             HHHHh
Q 007863          557 CLVEL  561 (587)
Q Consensus       557 ~l~~l  561 (587)
                      .|.+.
T Consensus        81 ~L~~~   85 (92)
T PF10363_consen   81 ILLDE   85 (92)
T ss_pred             HHHHH
Confidence            55553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=1.7  Score=44.69  Aligned_cols=323  Identities=15%  Similarity=0.122  Sum_probs=175.7

Q ss_pred             HHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccChhhhhh
Q 007863          163 ELRTIYRQ-LCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEPQDCVA  240 (587)
Q Consensus       163 ~l~~~l~~-l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (587)
                      +.++.+.. .-++.-++=|+.|+..|-.+++....+-...-+-|++..+-.|. +++.-..+.+++..+..+-..+    
T Consensus        22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~----   97 (970)
T KOG0946|consen   22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP----   97 (970)
T ss_pred             hHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch----
Confidence            33443333 33344566788888888888876544333333444444444443 3455555555555544332100    


Q ss_pred             chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH-----
Q 007863          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL-----  315 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-----  315 (587)
                              ...|.+..+-... ..+   +..+-.   .++.+..+...+...+-.||..+++.+..+....+.+.     
T Consensus        98 --------~v~dds~qsdd~g-~~i---ae~fik---~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll  162 (970)
T KOG0946|consen   98 --------EVMDDSTQSDDLG-LWI---AEQFIK---NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL  162 (970)
T ss_pred             --------hhcccchhhhHHH-HHH---HHHHHc---CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence                    0001111111111 112   221111   34678888888888888999999999999999888762     


Q ss_pred             HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCC----ChHHHHHHHHHhHHhhhh
Q 007863          316 AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       316 ~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~i~~~  388 (587)
                      ..+.-+..++.++.|..+.+|..++-.+..+....+.   -...+.++..+..++..+    ..-|...++..+..+.+.
T Consensus       163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~  242 (970)
T KOG0946|consen  163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN  242 (970)
T ss_pred             HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence            1244566678888999999999999888888765442   112233444444444332    134666677777776654


Q ss_pred             hchh-h-H-hhhhHHHHHHHh-----cCC---CcHHHH-HHH-HHHHHHHHhhChh------------hHHHHHHHHHHH
Q 007863          389 IGID-L-L-SQSLLPAIVELA-----EDR---HWRVRL-AII-EYIPLLASQLGVG------------FFDDKLGALCMQ  443 (587)
Q Consensus       389 ~~~~-~-~-~~~~~~~l~~~~-----~~~---~~~vr~-~~~-~~l~~l~~~~~~~------------~~~~~l~~~l~~  443 (587)
                      -..+ . + ....+|.+..++     .|.   .|..+. ..+ ..+..+...+.+.            .....++..+-.
T Consensus       243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~  322 (970)
T KOG0946|consen  243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT  322 (970)
T ss_pred             CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence            3322 1 1 234567766544     342   464332 222 2222222222111            122344555544


Q ss_pred             HcCCC--chHHHHHHHHHHHHHHHHhChh--hhh-----------hchHHHHHhhhcCC-ccHHHHHHHHHHHHhhc
Q 007863          444 WLKDK--VYSIRDAAANNVKRLAEEFGPD--WAM-----------QHIVPQVLEMINNP-HYLYRMTILQAISLLAP  504 (587)
Q Consensus       444 ~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~-----------~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~  504 (587)
                      .+-.+  ..+|+..++.+++.+++.....  .|.           ..++=.++.+.+.. .+..|.+...++..+..
T Consensus       323 il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~  399 (970)
T KOG0946|consen  323 ILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLY  399 (970)
T ss_pred             HHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHh
Confidence            44433  5689999999999998744321  111           22333334444443 47789999998877753

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.26  E-value=1.5  Score=44.05  Aligned_cols=128  Identities=14%  Similarity=0.132  Sum_probs=71.3

Q ss_pred             HHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh-hchHHHHHhHHHHHHHhcC--
Q 007863          294 AEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI-LGKDATIEQLLPIFLSLLK--  368 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~~~~~~~l~~~l~~~l~--  368 (587)
                      ...-+.++..+..+..+  ++.+. ...++..+....+-.  .....+-+.+..++.. .|.     ..+..+...+.  
T Consensus       191 ~~di~~~L~vldaii~y~~iP~~s-l~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-----~~i~~L~~iL~~~  262 (464)
T PF11864_consen  191 EDDIEACLSVLDAIITYGDIPSES-LSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-----SAIRTLCDILRSP  262 (464)
T ss_pred             HHHHHHHHHHHHHHHHcCcCChHH-HHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-----HHHHHHHHHHccc
Confidence            33346777777777663  33332 244444444332222  3444444555555532 222     22334444442  


Q ss_pred             ----CCChHHHHHHHHHhHHhhhhhchhhH------hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHH-HhhC
Q 007863          369 ----DEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-SQLG  429 (587)
Q Consensus       369 ----d~~~~vr~~a~~~l~~i~~~~~~~~~------~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~-~~~~  429 (587)
                          .++..+-.+|+..+..+.-..|.+.+      ...++|.+...++.++..+-..++..+..+. +.++
T Consensus       263 ~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~  334 (464)
T PF11864_consen  263 DPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYG  334 (464)
T ss_pred             CccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhh
Confidence                23456667888888887655533321      1238889988888888888777777777766 4444

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.25  E-value=1.7  Score=44.67  Aligned_cols=399  Identities=12%  Similarity=0.117  Sum_probs=195.0

Q ss_pred             cchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCC--------CHHHHH-HHHHHHHHHHHHHhh-----hhhHHHHHH
Q 007863          140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDD--------MPMVRR-SAATNLGKFAATVEA-----AHLKSEIMS  205 (587)
Q Consensus       140 ~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--------~~~vR~-~a~~~l~~l~~~~~~-----~~~~~~i~~  205 (587)
                      ..|-.|=.++..++...++-....++.++....+-.        +.-+++ ++-.+.|--+..+.+     .-+.+.++|
T Consensus       412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp  491 (978)
T KOG1993|consen  412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP  491 (978)
T ss_pred             ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence            344444445544444443334444444443222222        223343 333444444443332     223444555


Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhCC--CCcc---c
Q 007863          206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--EPTR---S  279 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~--~~~~---~  279 (587)
                      -+. ...+....+|+-.+-.++...+.--+.+..+.+...+.++++|. +-.||.++++++........-  +.+.   +
T Consensus       492 El~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~le  570 (978)
T KOG1993|consen  492 ELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLE  570 (978)
T ss_pred             Hhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHH
Confidence            444 12222345677777777766554334445666777888999998 778999999999888775432  1111   1


Q ss_pred             chHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcC--CCcHHHHHHHHHHHHhhhhhhchH-
Q 007863          280 DVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGKD-  353 (587)
Q Consensus       280 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~-  353 (587)
                      .+...+.++++. .+-+.|...+..++.+....++.  ++...++.++-.+..  .+++-.|.+.+..+.++...+|.+ 
T Consensus       571 nlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS  650 (978)
T KOG1993|consen  571 NLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS  650 (978)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC
Confidence            222223333332 33556777788888777765543  233334444433332  356788999999999998887743 


Q ss_pred             -HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh-----hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          354 -ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       354 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-----~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                       .+.+.+.|.+.....-++|+-..-...++.-....++..     ++ -.++|.+...++-.....| .+++.+..-.-.
T Consensus       651 ~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l-l~L~p~l~~~iE~ste~L~-t~l~Ii~sYilL  728 (978)
T KOG1993|consen  651 FEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL-LLLFPHLLYIIEQSTENLP-TVLMIISSYILL  728 (978)
T ss_pred             ccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhh
Confidence             344566676655544444443333223333332222211     11 1345555544443322222 223333332222


Q ss_pred             hChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-------ChhhhhhchHHHHHhh--hcCCccHHHHHHHHH
Q 007863          428 LGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-------GPDWAMQHIVPQVLEM--INNPHYLYRMTILQA  498 (587)
Q Consensus       428 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-------~~~~~~~~~~~~l~~~--l~~~~~~~r~~a~~~  498 (587)
                      .+..+...+. .-+.+.+.+--.+||.....++-.+...+       |.- ....++|.++..  .+++.+.+-...+..
T Consensus       729 d~~~fl~~y~-~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~-~~~~~L~~lf~~I~~~~~yP~~~~~yl~v  806 (978)
T KOG1993|consen  729 DNTVFLNDYA-FGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSL-LFSPLLSRLFLSIAENDKYPYVMGEYLLV  806 (978)
T ss_pred             ccHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhh-hcchhhHHHHHHHHhCCCCchhHHHHHHH
Confidence            2333222222 22222233333456666666655444321       211 235567766654  355555555555555


Q ss_pred             HHHhhcccChHH-------------HHHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhh
Q 007863          499 ISLLAPVMGSEI-------------TCSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       499 l~~l~~~~~~~~-------------~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~  544 (587)
                      ++.+.-. .++.             ....++..-..+..+ +.+.-|.--+-++..+...
T Consensus       807 vaRi~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t  865 (978)
T KOG1993|consen  807 VARISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT  865 (978)
T ss_pred             HHHHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence            5555421 1111             112223333333333 3567777777777776654

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.10  E-value=5.1  Score=48.78  Aligned_cols=281  Identities=12%  Similarity=0.112  Sum_probs=156.5

Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHh----CCC------CcccchHHHHHHhcCCChHHHHHHHHHhHHHHH
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV----GPE------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC  308 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~----~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  308 (587)
                      ...+++.+...+...+..++.....++..+....    |..      .....+++-+.+++.|+.|.-|.+.+..++.+.
T Consensus       982 ~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen  982 PSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred             HHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence            3457888888899999999999999988775532    321      112347777888899999999999999998888


Q ss_pred             HhhCHHHH---HHhHHHHHhHhcCCCc--------HHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChH
Q 007863          309 RILNPELA---IQHILPCVKELSSDSS--------QHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPD  373 (587)
Q Consensus       309 ~~~~~~~~---~~~~~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~  373 (587)
                      ..+.....   ...++..+.-.+.|..        ..++......+..+......    ......++..+..-+.+++..
T Consensus      1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~ 1141 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSD 1141 (3550)
T ss_pred             hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchH
Confidence            87764322   2223333333333321        12222222222222221111    112334555566667788889


Q ss_pred             HHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc---------CCCcHHHHHHHHHHHHHHHhhChhhHH--HHH---HH
Q 007863          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE---------DRHWRVRLAIIEYIPLLASQLGVGFFD--DKL---GA  439 (587)
Q Consensus       374 vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~---------~~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l---~~  439 (587)
                      ||..+...|..+....|.+.  ..++..+.+++.         ..........+..+.... ..+++.+.  ..+   ..
T Consensus      1142 VR~~~~~~L~~i~~~s~~~v--~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~-~l~p~~f~~~~~l~~l~~ 1218 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGKSV--VKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCL-SLGPCLFDFTEELYRLKR 1218 (3550)
T ss_pred             HHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHH-HcCCcccCchHHHHHHHH
Confidence            99999999999988776542  233333333331         122222333333322222 22332211  000   00


Q ss_pred             H--------------HHHHcC----CCchHHHHHHHHHHHHHHHHhChh-----hhhhchHHHHHhhhcCCccHHHHHHH
Q 007863          440 L--------------CMQWLK----DKVYSIRDAAANNVKRLAEEFGPD-----WAMQHIVPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       440 ~--------------l~~~l~----d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~r~~a~  496 (587)
                      .              +.....    ...-..|..+.+.++.........     .....++..+++.+..+...+-.++.
T Consensus      1219 ~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~ 1298 (3550)
T KOG0889|consen 1219 FLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVAL 1298 (3550)
T ss_pred             HHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHH
Confidence            0              011111    112245777777777766543321     13567777777777777788888888


Q ss_pred             HHHHHhhc---ccChHHHHHhHHHHHHhh
Q 007863          497 QAISLLAP---VMGSEITCSQLLPVVINA  522 (587)
Q Consensus       497 ~~l~~l~~---~~~~~~~~~~~l~~l~~~  522 (587)
                      .++..+..   .++.+......-|.+.++
T Consensus      1299 ~~l~~v~~~~~~~~ke~lq~~lrplL~~l 1327 (3550)
T KOG0889|consen 1299 EGLRKVLAQDVKLPKELLQSHLRPLLMNL 1327 (3550)
T ss_pred             HHHHhhhhccccccHHHHHhhHHHHHHhh
Confidence            88877764   355554444444555554

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.10  E-value=1.6  Score=43.00  Aligned_cols=387  Identities=13%  Similarity=0.133  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhh
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV  239 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  239 (587)
                      .++.++..+..+...++ .+|.+.+-++..++-.++  .+.+.+...+..+.+++ +.++     ++-.+.+.+|++...
T Consensus        60 lrdsl~thl~~l~~~~~-~i~tQL~vavA~Lal~~~--~W~n~I~e~v~~~~~~~-~~~~-----~lLeiL~VlPEE~~~  130 (559)
T KOG2081|consen   60 LRDSLITHLKELHDHPD-VIRTQLAVAVAALALHMP--EWVNPIFELVRALSNKH-PAVP-----ILLEILKVLPEETRD  130 (559)
T ss_pred             HHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHHHHhH--hhcchHHHHHHHhhcCC-ccHH-----HHHHHHHhCcHhhcc
Confidence            45566667766666665 888888888888877664  34444555555554443 3233     344444455443111


Q ss_pred             hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC---hHHHHHHHHHhHHHHHH--hhCHH
Q 007863          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN---EAEVRIAAAGKVTKICR--ILNPE  314 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~l~~--~~~~~  314 (587)
                      ....     ...+    -|......   +...      ...++..+..+++++   +..+-..++++++.-..  .+.++
T Consensus       131 ~~~~-----~~a~----Rr~e~~~~---l~~~------~~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d  192 (559)
T KOG2081|consen  131 IRLT-----VGAN----RRHEFIDE---LAAQ------VSKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPD  192 (559)
T ss_pred             hhhh-----hhhh----hHHHHHHH---HHHh------HHHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHH
Confidence            1100     0000    01111111   1111      223445555555432   24555666666666555  33443


Q ss_pred             HHH-H-hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch-HH---HH------HhHHHHHHH-hcCCCChHHHHHHHHH
Q 007863          315 LAI-Q-HILPCVKELSSDSSQHVRSALATVIMGMAPILGK-DA---TI------EQLLPIFLS-LLKDEFPDVRLNIISK  381 (587)
Q Consensus       315 ~~~-~-~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~---~~------~~l~~~l~~-~l~d~~~~vr~~a~~~  381 (587)
                      .+. . .++......++  +...-..|.+++..+....-. +.   +.      ..++|...+ .....+.+-+.+..+-
T Consensus       193 ~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RI  270 (559)
T KOG2081|consen  193 QVLASFPLITLAFRSLS--DDELHEEATECICALLYCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRI  270 (559)
T ss_pred             HHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHHHHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHH
Confidence            221 1 34444445554  334455555555554433210 00   11      112222222 2233445556666666


Q ss_pred             hHHhhhhhc------hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh-------hHHHH---HHHHHHHHc
Q 007863          382 LDQVNQVIG------IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-------FFDDK---LGALCMQWL  445 (587)
Q Consensus       382 l~~i~~~~~------~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-------~~~~~---l~~~l~~~l  445 (587)
                      +..+++..-      +++. -.++..+.-....++|++-.........+.+.+...       .|.++   ++..+....
T Consensus       271 Ftel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~  349 (559)
T KOG2081|consen  271 FTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHV  349 (559)
T ss_pred             HHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHc
Confidence            666654432      1211 123333344446677777666666655555544211       11222   222222222


Q ss_pred             C------------CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHH
Q 007863          446 K------------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS  513 (587)
Q Consensus       446 ~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~  513 (587)
                      +            ++..+-|......+..+....|.+...+...-.+.+  +.+.|+.-++++..+..++..+.++  ..
T Consensus       350 qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~  425 (559)
T KOG2081|consen  350 QLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--EN  425 (559)
T ss_pred             cCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--cc
Confidence            1            233578899999999988888876433333322222  4567999999999999999987765  35


Q ss_pred             hHHHHHHhhcCC--CCccHHHHHHHHHHHHHhhhchH-HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          514 QLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       514 ~~l~~l~~~l~d--~~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .++|.+++...+  ....+|.+++..+|.+.+.+... ...+-++..+.....+..  ....|..++..+++
T Consensus       426 ~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~  495 (559)
T KOG2081|consen  426 TIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS  495 (559)
T ss_pred             chHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence            677777666543  24459999999999998887664 333444444455444444  55566666666554

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.04  E-value=0.95  Score=43.41  Aligned_cols=70  Identities=14%  Similarity=0.088  Sum_probs=50.2

Q ss_pred             hhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHH
Q 007863          239 VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR  309 (587)
Q Consensus       239 ~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  309 (587)
                      ...+...+..++. +.+.........+|..-...+ .....+.++..+.+.++|..+.+|+.-+..++....
T Consensus        20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~-~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~   90 (339)
T PF12074_consen   20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL-SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW   90 (339)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh-CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence            3444444444433 567777888888887776666 333356788999999999888899999988888876

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=96.01  E-value=1.8  Score=42.81  Aligned_cols=290  Identities=15%  Similarity=0.146  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhh---hchHHHHHHhcCCC
Q 007863          177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQDK  253 (587)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~~~d~  253 (587)
                      ...|..++++||.++..++.+......-+.+..++++....-|..+.-.+...+.........   +.+.+.+...++++
T Consensus       101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~  180 (441)
T PF12054_consen  101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP  180 (441)
T ss_pred             HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence            567889999999999998765555555567888888888888888888888888776542222   35666666666633


Q ss_pred             c-----------hHHHHHHHHHHHHHHHHhCCCCcccchHHHH---HHhcCCCh------HHHHHHHHHhHHHHHHhhCH
Q 007863          254 S-----------WRVRYMVANQLYELCEAVGPEPTRSDVVPAY---VRLLRDNE------AEVRIAAAGKVTKICRILNP  313 (587)
Q Consensus       254 ~-----------~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l---~~~l~d~~------~~vr~~a~~~l~~l~~~~~~  313 (587)
                      .           .++|..+-..+..+... |.  ....-+|.+   .+.-.+..      ....+.+-..+..+...+++
T Consensus       181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~-g~--~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~  257 (441)
T PF12054_consen  181 EPPYYDELVPSLKRLRTECQQLLATFRDV-GK--VPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP  257 (441)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHh-CC--CChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence            2           23455555544444332 22  111112222   11111111      22233333334444444432


Q ss_pred             HHH----------HHhHH---HHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863          314 ELA----------IQHIL---PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS  380 (587)
Q Consensus       314 ~~~----------~~~~~---~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  380 (587)
                      ...          ...+.   ..+...-..-+-+|+.+++.++..+... + +...+.|.|++...=++++..++..++.
T Consensus       258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~l-P-~KLnPiIrpLMdSIK~Een~~LQ~rsA~  335 (441)
T PF12054_consen  258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGL-P-KKLNPIIRPLMDSIKREENELLQQRSAE  335 (441)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-C-CCccHHHHHHHHHhhccccHHHHHHHHH
Confidence            210          01122   2222222223456666666666665432 2 2233445566666666788999999999


Q ss_pred             HhHHhhhhhchh--hHhhhhHHHHHHHhc-CC--CcHHH--HHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHH
Q 007863          381 KLDQVNQVIGID--LLSQSLLPAIVELAE-DR--HWRVR--LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR  453 (587)
Q Consensus       381 ~l~~i~~~~~~~--~~~~~~~~~l~~~~~-~~--~~~vr--~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  453 (587)
                      ++..++......  .-.+.++..+..++. |.  -+.+-  ...-..+-.+.+.-...   +.-...-..--...-.-.|
T Consensus       336 slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~---~~~~~~~~~~~~~~a~I~R  412 (441)
T PF12054_consen  336 SLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKA---DHADAASEEREQKEARIQR  412 (441)
T ss_pred             HHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccc---cccccccchhhhhhhHHHh
Confidence            999988665311  112467777766653 21  11111  00000000001000000   0000000000001122458


Q ss_pred             HHHHHHHHHHHHHhChhhhhh
Q 007863          454 DAAANNVKRLAEEFGPDWAMQ  474 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~~~~  474 (587)
                      ..|..+|..++..||.+.|..
T Consensus       413 rGA~~aL~~l~~~FG~~Lf~~  433 (441)
T PF12054_consen  413 RGAELALEQLAKRFGSSLFEK  433 (441)
T ss_pred             cCHHHHHHHHHHHHhHHHHHh
Confidence            999999999999999997654

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=2  Score=43.18  Aligned_cols=279  Identities=16%  Similarity=0.069  Sum_probs=132.7

Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHH
Q 007863          283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  362 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  362 (587)
                      ..+-+.+..++..++..|+-.++-.......+  .+.++-.+...+++++..+|.+++--++-.......    +.++..
T Consensus       418 ~qldkylys~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~----e~V~~l  491 (878)
T KOG2005|consen  418 EQLDKYLYSDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR----EEVLEL  491 (878)
T ss_pred             HHHHHHhhcCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCch----HHHHHH
Confidence            33344444455566666665555443322222  244566667777888888998888776654333222    233345


Q ss_pred             HHHhcCCCChH--HHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHHHHHH
Q 007863          363 FLSLLKDEFPD--VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  438 (587)
Q Consensus       363 l~~~l~d~~~~--vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  438 (587)
                      +...+.|.+..  |...+.-+++.+.-..-+++....++..+.+--+  -.+...|-.++..-   .-.+|.....+...
T Consensus       492 L~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~ilqtlmekse~El~d~~~RFL~LGL~---llflgkqe~~d~~~  568 (878)
T KOG2005|consen  492 LSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSILQTLMEKSETELEDQWFRFLALGLA---LLFLGKQESVDAVV  568 (878)
T ss_pred             HhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHHHHHHHHhhhhhhhchHHHHHHHHHH---HHHhcccchHHHHH
Confidence            66667776555  5555555555544322234444555555544322  12333443332211   11122221122222


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchH-HHHHhhhcCCcc-HHHHHHHHHHHHhhcccChHHHHHhHH
Q 007863          439 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV-PQVLEMINNPHY-LYRMTILQAISLLAPVMGSEITCSQLL  516 (587)
Q Consensus       439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~l  516 (587)
                      ..+    ..-...+|..+ ..+-..|...|..... .+- ..+...-.++.. .-...-...++.-.-.+|.+.-.+-.+
T Consensus       569 e~~----~~i~~~~~~~~-~~lv~~caYaGTGnvl-~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~l  642 (878)
T KOG2005|consen  569 ETI----KAIEGPIRKHE-SILVKSCAYAGTGNVL-KIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVL  642 (878)
T ss_pred             HHH----HHhhhHHHHHH-HHHHHHhhccccCceE-EechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHH
Confidence            221    11112233222 2222233333322110 010 111111111110 000000112222222334443334455


Q ss_pred             HHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863          517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       517 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l  580 (587)
                      ..+-.++.-..+++|...--+++.++..-+    +-.++..|.++.+|.|.+|..+|.-+++-+
T Consensus       643 R~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLi  702 (878)
T KOG2005|consen  643 RHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLI  702 (878)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccc
Confidence            555566666788888888888888765422    125788888888999999988888887654

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.95  E-value=1.4  Score=40.98  Aligned_cols=175  Identities=14%  Similarity=0.117  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhhh-h-H-HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh---hhhhchHHHH
Q 007863          173 QDDMPMVRRSAATNLGKFAATVEAAH-L-K-SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVI  246 (587)
Q Consensus       173 ~~~~~~vR~~a~~~l~~l~~~~~~~~-~-~-~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l  246 (587)
                      .+.++.-|..+..-|..++..+.... + . .-+.+.+. ++++.+..+|..|+..++...+.-++.   -.....++.+
T Consensus        93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            34456777778888888777765421 1 1 12334444 888888999999999999988877761   1222234434


Q ss_pred             H-HhcCCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcCC--ChHHHHHHHHHhHHHHHHhhCHH--HHHH
Q 007863          247 V-NFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLRD--NEAEVRIAAAGKVTKICRILNPE--LAIQ  318 (587)
Q Consensus       247 ~-~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~--~~~~  318 (587)
                      . .+.+|++..+|..|.-+++.+........   ..-.=...+...+++  .+...+.-++..+..+...-..+  ....
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            3 34456777888999988888887654311   111224455555655  45666777777777776643222  1222


Q ss_pred             hHHHHH-hHhcCCCcHHHHHHHHHHHHhhhh
Q 007863          319 HILPCV-KELSSDSSQHVRSALATVIMGMAP  348 (587)
Q Consensus       319 ~~~~~l-~~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                      ..++.. ..+...-++.++..+...+.....
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            222322 233444566777777666555543

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.94  E-value=0.22  Score=47.45  Aligned_cols=73  Identities=19%  Similarity=0.342  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHc----------CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc--cHHHHHHHH
Q 007863          432 FFDDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH--YLYRMTILQ  497 (587)
Q Consensus       432 ~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~r~~a~~  497 (587)
                      .+.-.++|.++.++          .+..|.+|..|+..++.+++.++...  ....++..+.+.+.|+.  ......|+.
T Consensus       254 ~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~  333 (343)
T cd08050         254 PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIV  333 (343)
T ss_pred             HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHH
Confidence            34455777777665          35679999999999999999998763  34556666666666653  445778888


Q ss_pred             HHHHhhc
Q 007863          498 AISLLAP  504 (587)
Q Consensus       498 ~l~~l~~  504 (587)
                      .+..++.
T Consensus       334 GL~~lG~  340 (343)
T cd08050         334 GLSALGP  340 (343)
T ss_pred             HHHHhCc
Confidence            8877764

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=95.93  E-value=0.2  Score=41.89  Aligned_cols=112  Identities=20%  Similarity=0.209  Sum_probs=87.7

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH---Hhhhch
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL---IPIVDQ  547 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l---~~~~~~  547 (587)
                      +.++|.+++-+.+.+...|..|...+..+...-+.+   .+.+.+++.+...++..++.|...++++|..+   ...+|+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            678999999998888889999999999998873333   34677888888999999999999999999999   555665


Q ss_pred             H--HHHHhHHHHHHHhcC-----------CCCccHHHHHHHHHHHHHHHhh
Q 007863          548 S--VVEKSIRPCLVELSE-----------DPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       548 ~--~~~~~i~~~l~~l~~-----------d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      .  ++...++|.+..+.+           ....+++.....+|..+.+.=|
T Consensus       117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG  167 (183)
T PF10274_consen  117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG  167 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence            4  666788888875432           2456788888888887766543

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.69  E-value=2.4  Score=41.87  Aligned_cols=192  Identities=13%  Similarity=0.154  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhh---h---hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          160 LKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEA---A---HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~---~---~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      ....+..++...++++ +|..-....++++.+++...+   +   .+.+.++|.+...++.+-.+.--.+...++.+.+.
T Consensus        68 il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~  147 (435)
T PF03378_consen   68 ILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL  147 (435)
T ss_dssp             HHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4455666666666654 688889999999999887543   1   46788999999888876444444555666666655


Q ss_pred             cChhhhhhchHHHHHHhcCCCchHHH---HHHHHHHHHHHHHhCCC----CcccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007863          233 LEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEAVGPE----PTRSDVVPAYVRLLRDNEAEVRIAAAGKVT  305 (587)
Q Consensus       233 ~~~~~~~~~l~~~l~~~~~d~~~~vR---~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (587)
                      -+.....+....++..++...-|+-|   -+..+.|..+...-+..    .....++.++.+++..+..+  ..+...|.
T Consensus       148 ~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~  225 (435)
T PF03378_consen  148 RPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLE  225 (435)
T ss_dssp             SS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHH
Confidence            44211222222223333344444422   22234444444433322    12335778888888765422  45778899


Q ss_pred             HHHHhhCHHH---HHHhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhchH
Q 007863          306 KICRILNPEL---AIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILGKD  353 (587)
Q Consensus       306 ~l~~~~~~~~---~~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~  353 (587)
                      .+...++.+.   +.+.++..+.+.+ +.+.++.+...+..++-++...|.+
T Consensus       226 ~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  226 SIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             HHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            9999888763   4455666655544 3556666666666666665444443

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=95.67  E-value=0.88  Score=45.00  Aligned_cols=145  Identities=13%  Similarity=0.060  Sum_probs=72.3

Q ss_pred             CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh-cC
Q 007863          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI-NN  486 (587)
Q Consensus       410 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l-~~  486 (587)
                      +-+|+..+..++-.+.. ++ +-..+-+.|++...-+.++..++..++.++..++..+....  -.++++..|..++ .|
T Consensus       289 ~~~V~Aa~A~A~v~l~~-lP-~KLnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D  366 (441)
T PF12054_consen  289 DVRVLAAAASALVALGG-LP-KKLNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVD  366 (441)
T ss_pred             HHHHHHHHHHHHHHhcc-CC-CCccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccC
Confidence            34444444444443322 22 22334455555555677888999999999999998765321  2366777777665 23


Q ss_pred             Cc--cHHH--HHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863          487 PH--YLYR--MTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  561 (587)
Q Consensus       487 ~~--~~~r--~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l  561 (587)
                      +.  +..-  ...-..|-.+.+.-..   .......-..--...-.-.|..|..+|..++..+|.+-|  .-+|.|.++
T Consensus       367 ~seTP~~~~~~~~~~gILsl~k~~~~---~~~~~~~~~~~~~~~a~I~RrGA~~aL~~l~~~FG~~Lf--~~lP~Lw~~  440 (441)
T PF12054_consen  367 TSETPEFSHNVDKKDGILSLRKEEDK---ADHADAASEEREQKEARIQRRGAELALEQLAKRFGSSLF--EKLPKLWEC  440 (441)
T ss_pred             cccCCCCCCCcchhhcccchhhhccc---ccccccccchhhhhhhHHHhcCHHHHHHHHHHHHhHHHH--HhhhHHHhh
Confidence            21  1100  0000000000000000   000000000001112345788899999999999988765  346666554

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=95.57  E-value=1.7  Score=41.66  Aligned_cols=49  Identities=14%  Similarity=0.024  Sum_probs=34.2

Q ss_pred             HhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhc
Q 007863          513 SQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS  562 (587)
Q Consensus       513 ~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~  562 (587)
                      ..+...++.++.++  .+.+|..|.+++..++...+.. +...++..+.+.+
T Consensus       203 ~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l  253 (339)
T PF12074_consen  203 SAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL  253 (339)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence            34555566666666  8999999999999998765433 5556666666643

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.54  E-value=0.9  Score=42.93  Aligned_cols=184  Identities=12%  Similarity=0.129  Sum_probs=93.2

Q ss_pred             hhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC
Q 007863          195 EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP  274 (587)
Q Consensus       195 ~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~  274 (587)
                      ++++...+++..+.+++.++...+.     .+..+...-     .......+.+++..+++.++..++..+..++...+.
T Consensus        69 ~~~d~v~yvL~li~dll~~~~~~~~-----~~~~~~~~~-----~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~  138 (312)
T PF03224_consen   69 SNDDTVQYVLTLIDDLLSDDPSRVE-----LFLELAKQD-----DSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPK  138 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-SSSSHH-----HHHHHHH-T-----TH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred             CcHHHHHHHHHHHHHHHhcCHHHHH-----HHHHhcccc-----cchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence            4456667777777777776643221     222222211     111344444577788999999999999988765443


Q ss_pred             CCcc--cchHHHHHHhcC----CChHHHHHHHHHhHHHHHHhhC--HHHHHHhHHHHHhHhc-----CC--CcHHHHHHH
Q 007863          275 EPTR--SDVVPAYVRLLR----DNEAEVRIAAAGKVTKICRILN--PELAIQHILPCVKELS-----SD--SSQHVRSAL  339 (587)
Q Consensus       275 ~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~-----~d--~~~~vr~~a  339 (587)
                      ....  ..+++.+.+.+.    .++.+++..++.++..+...-.  ...+....++.+.+.+     .+  .+..+...+
T Consensus       139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~  218 (312)
T PF03224_consen  139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQA  218 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHH
Confidence            3222  145555555544    3556778889999998876311  1122344555555555     22  234555666


Q ss_pred             HHHHHhhhhh--hchHHHHHhHHHHHHHhcCCC-ChHHHHHHHHHhHHhhhh
Q 007863          340 ATVIMGMAPI--LGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       340 ~~~l~~l~~~--~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~  388 (587)
                      +-++..+.-.  .-.......++|.+...+++. .+.|-.-++..+.+++..
T Consensus       219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~  270 (312)
T PF03224_consen  219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK  270 (312)
T ss_dssp             HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            6555544311  111122234677777776654 345555555556655544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=95.45  E-value=0.58  Score=39.18  Aligned_cols=123  Identities=14%  Similarity=0.149  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhh---hchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccChH-
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAM---QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSE-  509 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~-  509 (587)
                      .++..-+.++++++++.-|..++..++..++..+.+.+.   ...+..+...++.++ ..++..++.++..+....+.. 
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            445555666666666666777777666666665555432   334444444444443 345666666666666533221 


Q ss_pred             --------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHH
Q 007863          510 --------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLV  559 (587)
Q Consensus       510 --------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~  559 (587)
                              .....+++.++.++++  ......++.+|..+...++..  ++...+-..+.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~  161 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALL  161 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence                    1233445555555555  667778888888888776542  34444444433

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.40  E-value=4.2  Score=42.59  Aligned_cols=360  Identities=11%  Similarity=0.075  Sum_probs=199.2

Q ss_pred             hHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCc-----hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc--
Q 007863          217 SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL--  289 (587)
Q Consensus       217 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--  289 (587)
                      ..|..-.+.+-...+.++ +...+.+...+-+.+.|.+     |..-.+++-++..++.++|...  ...+|.+.+..  
T Consensus       439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~as  515 (982)
T KOG2022|consen  439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSAS  515 (982)
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccc
Confidence            456666666666666665 3355666667777766654     7888888888999999887653  23466665543  


Q ss_pred             ---CCChHHHHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHH
Q 007863          290 ---RDNEAEVRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIF  363 (587)
Q Consensus       290 ---~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l  363 (587)
                         +-.++..-..+...++.++..++.. .+.+..+|.+.+.+..+...  ..+...+..+++.+..  ..+.+.++...
T Consensus       516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s--~q~i~tl~tlC~~C~~~L~py~d~~~a~~  593 (982)
T KOG2022|consen  516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKES--EQAISTLKTLCETCPESLDPYADQFSAVC  593 (982)
T ss_pred             cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHH--HHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence               2236778888999999999988776 45577788888877644333  3334446777765542  23445555556


Q ss_pred             HHhcCCC--ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHh-------c--CCCcHHHHHHHHHHHHHHHhhC---
Q 007863          364 LSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-------E--DRHWRVRLAIIEYIPLLASQLG---  429 (587)
Q Consensus       364 ~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~-------~--~~~~~vr~~~~~~l~~l~~~~~---  429 (587)
                      ...+...  ....|..+.+++|.+.+.+.+++....++..+...+       .  -+++.-+...+-.+..++..+.   
T Consensus       594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~  673 (982)
T KOG2022|consen  594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLI  673 (982)
T ss_pred             HHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence            5655543  367899999999999988876655444333332221       1  1334444444334444333220   


Q ss_pred             ----------------------hhhHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh--
Q 007863          430 ----------------------VGFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM--  483 (587)
Q Consensus       430 ----------------------~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~--  483 (587)
                                            .-.+..+++|.+.+.+  .-....|-+.++...+.=....+.. |....+|.+..+  
T Consensus       674 ~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~  752 (982)
T KOG2022|consen  674 NKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIV  752 (982)
T ss_pred             CCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHH
Confidence                                  0112234555555443  2334556666666655444444444 434445554443  


Q ss_pred             --hcCCccHHHHHHHHHHHHhhc--ccCh----H--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------
Q 007863          484 --INNPHYLYRMTILQAISLLAP--VMGS----E--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------  547 (587)
Q Consensus       484 --l~~~~~~~r~~a~~~l~~l~~--~~~~----~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------  547 (587)
                        ...+....-.-...++.....  .+++    +  .+....+-.+...--.+++++-......+.++.+..+.      
T Consensus       753 r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~  832 (982)
T KOG2022|consen  753 RFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM  832 (982)
T ss_pred             HhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch
Confidence              222211111111111111111  1111    1  01222222222222234677777778888888777543      


Q ss_pred             HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          548 SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       548 ~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ..+...+++.-..++..+.+---.+|.+-+..+.-
T Consensus       833 ~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~  867 (982)
T KOG2022|consen  833 LAFTSLILICAFILLNSPEPTTIRAASQFLTALAT  867 (982)
T ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence            36667778777788888877655555555555543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.38  E-value=2.1  Score=38.89  Aligned_cols=58  Identities=26%  Similarity=0.272  Sum_probs=42.2

Q ss_pred             CCCccHHHHHHHHHHHHHhhh-chHH-HHHhHHHHHHHh-cCCCCccHHHHHHHHHHHHHH
Q 007863          525 DRVPNIKFNVAKVLQSLIPIV-DQSV-VEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       525 d~~~~vR~~a~~~l~~l~~~~-~~~~-~~~~i~~~l~~l-~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ++++.+|...+++|-.++..- |.+. ....+-|++.++ ...+++++|....+....+..
T Consensus       255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            568999999999999987553 3333 334678888885 456888998877776665543

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=95.37  E-value=2.8  Score=40.41  Aligned_cols=303  Identities=19%  Similarity=0.115  Sum_probs=145.1

Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHH-HHhcCC-ChHHHHHHHHHhHHHHHHhh-CHHHH
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAY-VRLLRD-NEAEVRIAAAGKVTKICRIL-NPELA  316 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l-~~~l~d-~~~~vr~~a~~~l~~l~~~~-~~~~~  316 (587)
                      ..+.+...+-+++..||.++.+.+..+......  ....-++--++ .++-+| +...-|..|++.+..+...- |.+.+
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~  105 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI  105 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence            334444333333488888888887665532110  00000111111 122233 34567888888888887763 23333


Q ss_pred             HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhh
Q 007863          317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ  396 (587)
Q Consensus       317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~  396 (587)
                      ...++..+.....+++.+.|..+++.+.+++-.-+.-.....-+..+...+.|...++                    .+
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~--------------------~~  165 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSI--------------------SE  165 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhH--------------------HH
Confidence            4556777777778888889998888888876332211111112223333333322222                    23


Q ss_pred             hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH----cCCCch-HHHHHHHHHHHHHHHHhChhh
Q 007863          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW----LKDKVY-SIRDAAANNVKRLAEEFGPDW  471 (587)
Q Consensus       397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~l~~~~~~~~  471 (587)
                      .++..+..++++++.+.-..             +....+.+...+...    ..+... +.-..+..++..+.+...+=.
T Consensus       166 ~l~~~lL~lLd~p~tR~yl~-------------~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl  232 (371)
T PF14664_consen  166 SLLDTLLYLLDSPRTRKYLR-------------PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLL  232 (371)
T ss_pred             HHHHHHHHHhCCcchhhhhc-------------CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCcee
Confidence            34444444444443321000             000001111111111    111111 234445555666655443211


Q ss_pred             -h-h--hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHh------HHHHHH----hhc---C----------
Q 007863          472 -A-M--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ------LLPVVI----NAS---K----------  524 (587)
Q Consensus       472 -~-~--~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~------~l~~l~----~~l---~----------  524 (587)
                       + .  ..-+..+...+.-|+..+|...+..+-.+...-.+.|....      ..+.-.    ++.   .          
T Consensus       233 ~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~  312 (371)
T PF14664_consen  233 YLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS  312 (371)
T ss_pred             eeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc
Confidence             0 0  14566677777788888888888888777753322211000      000000    000   0          


Q ss_pred             CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCC-CccHHHHHHHHHHHHHHHh
Q 007863          525 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDP-DVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       525 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~Vr~~a~~al~~l~~~~  584 (587)
                      ...++.-.+....+-.+       .+...+++.|.++..++ ++.++..|.--++.+-.+.
T Consensus       313 ~~~~~l~~~y~aLll~i-------li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  313 SKRPNLVNHYLALLLAI-------LIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             cccccHHHHHHHHHHHH-------HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            01122222222222222       23346888999987766 8889999998888876654

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=95.29  E-value=0.3  Score=46.49  Aligned_cols=136  Identities=15%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC-------hHHHHHHHHHhHHHHHHh--hCHHH
Q 007863          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN-------EAEVRIAAAGKVTKICRI--LNPEL  315 (587)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~--~~~~~  315 (587)
                      .+...+.+.+...|..|+..|..       +.....++|.|..++.+.       +...-...++....+...  +.-+.
T Consensus       182 ~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~  254 (343)
T cd08050         182 EITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP  254 (343)
T ss_pred             HHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence            33444445667777777665442       333567888888887543       222223333333333331  22346


Q ss_pred             HHHhHHHHHhHhc----------CCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCCC--hHHHHHHHHH
Q 007863          316 AIQHILPCVKELS----------SDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDEF--PDVRLNIISK  381 (587)
Q Consensus       316 ~~~~~~~~l~~~~----------~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~--~~vr~~a~~~  381 (587)
                      +...++|.+..++          .+.+|.+|..++..+..++..++..  .....+...+.+.+.|+.  .....+|+.+
T Consensus       255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G  334 (343)
T cd08050         255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG  334 (343)
T ss_pred             hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence            6677888877654          2467999999999999999888743  345566666666666543  3447888888


Q ss_pred             hHHhhh
Q 007863          382 LDQVNQ  387 (587)
Q Consensus       382 l~~i~~  387 (587)
                      |..++.
T Consensus       335 L~~lG~  340 (343)
T cd08050         335 LSALGP  340 (343)
T ss_pred             HHHhCc
Confidence            877653

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF05536 Neurochondrin: Neurochondrin

Probab=95.24  E-value=4.2  Score=41.63  Aligned_cols=175  Identities=14%  Similarity=0.117  Sum_probs=116.9

Q ss_pred             chhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCch-HHHHHHHHHHHHHHHHhCCC---CcccchHHHHHH
Q 007863          215 QDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPE---PTRSDVVPAYVR  287 (587)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~-~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~  287 (587)
                      ....+..|+..|..++. .++   +...-.-+|.+...+...+. .+-..+.++|..++.. +..   ......++.+.+
T Consensus        70 ~~~~~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~-~~G~~aLl~~g~v~~L~e  147 (543)
T PF05536_consen   70 PEEYLSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASS-PEGAKALLESGAVPALCE  147 (543)
T ss_pred             HHHHHHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-cHhHHHHHhcCCHHHHHH
Confidence            34567788888888776 111   22233467888888877666 8888888998888732 211   112345666666


Q ss_pred             hcCCChHHHHHHHHHhHHHHHHhhCHHH------HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--------hH
Q 007863          288 LLRDNEAEVRIAAAGKVTKICRILNPEL------AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--------KD  353 (587)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~~  353 (587)
                      .+.+ .+.....++..+..+....+.+.      ....+++.+...........+-.++..++.+....+        ..
T Consensus       148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~  226 (543)
T PF05536_consen  148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP  226 (543)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence            6555 55678888888888877766432      223566666666666666777778888888765542        23


Q ss_pred             HHHHhHHHHHHHhcCCC-ChHHHHHHHHHhHHhhhhhchh
Q 007863          354 ATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~  392 (587)
                      .....+...+..+++.. .+.-|..+....+.+.+..|.+
T Consensus       227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence            35567777787777664 5778888888888888888765

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=95.12  E-value=4.4  Score=41.22  Aligned_cols=67  Identities=10%  Similarity=0.071  Sum_probs=44.8

Q ss_pred             hhhhchHHHHHhhhcCC----ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          471 WAMQHIVPQVLEMINNP----HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       471 ~~~~~~~~~l~~~l~~~----~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                      .|.+.++..+.+.+.|.    ...+|.-|++.+..+...-     ....-+.+.+.+-|+.+.+|.-+.++..++.
T Consensus       687 ~fr~~iln~l~nY~~d~rGDVgs~iR~~a~klm~SfL~kD-----~~~~~~y~iR~~~dki~~lR~l~yqa~eqI~  757 (993)
T COG5234         687 EFRKEILNVLSNYLTDTRGDVGSWIRKPAMKLMSSFLVKD-----SSGKKLYIIRQTFDKIDSLRGLAYQALEQIR  757 (993)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHhhcc-----ccCCchhHHHHhhcccHHHHhhhhhhhhhee
Confidence            46677777777776654    3568888888887764310     0112236777788899999988877777664

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=95.11  E-value=2  Score=44.28  Aligned_cols=314  Identities=16%  Similarity=0.137  Sum_probs=158.2

Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcc-----cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--HH
Q 007863          243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--EL  315 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~~  315 (587)
                      +|-...++...++.++..|+..+..++..  ....+     -.-++.++.++.....+|+..|+.+|.++.-.-..  ..
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            34445556677777777777777766642  11111     12477888888888889999999888887542211  10


Q ss_pred             ---HHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhh--hchHHHHHhHHHHHHHh-c------CCC-------ChHHH
Q 007863          316 ---AIQHILPCVKELSSD-SSQHVRSALATVIMGMAPI--LGKDATIEQLLPIFLSL-L------KDE-------FPDVR  375 (587)
Q Consensus       316 ---~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~-l------~d~-------~~~vr  375 (587)
                         ....-+|.+..++.. .+..||..+...+..+...  +... ....-++.+... +      .++       +.+|-
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~-ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKML-IITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHH-HHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence               001234445554443 4667787777777777654  1111 111111111111 1      111       13444


Q ss_pred             HHHHHHhHHhhhhhc--hh------hHhhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863          376 LNIISKLDQVNQVIG--ID------LLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       376 ~~a~~~l~~i~~~~~--~~------~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      ..+..+|..+...-.  .+      ...+.++-.+...+.  +.+...-.+++..+..++..+..+     +.+.....+
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~E-----vp~~~~~~~  466 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAE-----VPPKYRQVL  466 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhh-----cCHhhhhHh
Confidence            455555555543211  01      112233333333332  222222233333333333222221     111111111


Q ss_pred             C-------CCchHHHHHHHHHHHHHHHHh-----------------Chhh-hhhchHHHHHhhh-cCCccHHHHHHHHHH
Q 007863          446 K-------DKVYSIRDAAANNVKRLAEEF-----------------GPDW-AMQHIVPQVLEMI-NNPHYLYRMTILQAI  499 (587)
Q Consensus       446 ~-------d~~~~vr~~a~~~l~~l~~~~-----------------~~~~-~~~~~~~~l~~~l-~~~~~~~r~~a~~~l  499 (587)
                      .       -..+.   ....|++.-.+..                 |.++ +...++..-..++ ...+..+-++++.+|
T Consensus       467 ~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaL  543 (717)
T KOG1048|consen  467 ANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGAL  543 (717)
T ss_pred             hcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhH
Confidence            0       00011   2233333333220                 1111 2233333322222 334667778888888


Q ss_pred             HHhhcccChH-------H-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-HHHHhHHHHHHHhcCCCCc
Q 007863          500 SLLAPVMGSE-------I-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDV  567 (587)
Q Consensus       500 ~~l~~~~~~~-------~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~  567 (587)
                      .++.-..+..       . -.+..+|.+.+++...+..|-..++.+|.++.....+. .+..+.+|-|...+-+..+
T Consensus       544 QNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~  620 (717)
T KOG1048|consen  544 QNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGP  620 (717)
T ss_pred             hhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCC
Confidence            8887533221       1 24667899999999999999999999999998766553 5556788888887766544

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=95.06  E-value=4.9  Score=41.51  Aligned_cols=370  Identities=15%  Similarity=0.127  Sum_probs=185.3

Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc---
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---  277 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---  277 (587)
                      +|-...++...++.++..|..-+..+.-.-.+   +...-.=++.+..++...+.+|+..|+.+|.++...-.....   
T Consensus       235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla  314 (717)
T KOG1048|consen  235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA  314 (717)
T ss_pred             cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence            34444455566666666666555554322111   111222467778888899999999999999988743221100   


Q ss_pred             --ccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHhc-------CCC--c-----HHHHHH
Q 007863          278 --RSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKELS-------SDS--S-----QHVRSA  338 (587)
Q Consensus       278 --~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~~-------~d~--~-----~~vr~~  338 (587)
                        ...=+|.+.+++.. .|.+||+.....|.++...  +..... ...+..+....       .++  .     ..|-..
T Consensus       315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii-~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n  393 (717)
T KOG1048|consen  315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLII-TSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRN  393 (717)
T ss_pred             hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHH-HHHHHHHHHhhcccccccCCCCcccccccceeeeh
Confidence              11235666666653 5678999888888777664  222111 12222221111       111  1     122223


Q ss_pred             HHHHHHhhhhhhc--h------HHHHHhHHHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC
Q 007863          339 LATVIMGMAPILG--K------DATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  408 (587)
Q Consensus       339 a~~~l~~l~~~~~--~------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~  408 (587)
                      +..+|..+...-.  .      +...+.++-.+...+.  +.+..-...+.-.+..+.--+.     .++-+.....+..
T Consensus       394 ~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~-----~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  394 VTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLE-----AEVPPKYRQVLAN  468 (717)
T ss_pred             hhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhh-----hhcCHhhhhHhhc
Confidence            3334433332110  0      0112223333332222  2222222333333333322111     1122222211111


Q ss_pred             CC--cHHHH--HHHHHHHHHHHh---------h--------Chh-hHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHH
Q 007863          409 RH--WRVRL--AIIEYIPLLASQ---------L--------GVG-FFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       409 ~~--~~vr~--~~~~~l~~l~~~---------~--------~~~-~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~  465 (587)
                      .+  ..+..  ....+++.-.+.         +        |.+ .+.+.++...+.++. ..+..+-++++.+|..+.-
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence            00  00000  111111111111         0        001 123455555555544 4466788888888888765


Q ss_pred             HhCh-------hh-hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCc------cH
Q 007863          466 EFGP-------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVP------NI  530 (587)
Q Consensus       466 ~~~~-------~~-~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~------~v  530 (587)
                      ..+.       .. ..+..+|.+++++...+..+-.+++.++.++...... +.+.++.+|.+++.+.+..+      ++
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence            3221       11 2477899999999999988989999999999876654 34568899999999887644      66


Q ss_pred             HHHHHHHHHHHHh-hhch--HHHHHhHHHHHHHhcCC-CCccHHHHHHHHHHH
Q 007863          531 KFNVAKVLQSLIP-IVDQ--SVVEKSIRPCLVELSED-PDVDVRFFATQALQS  579 (587)
Q Consensus       531 R~~a~~~l~~l~~-~~~~--~~~~~~i~~~l~~l~~d-~~~~Vr~~a~~al~~  579 (587)
                      -..++.+|..+.. .+..  +.+...=++.|..+... .++.+-..|...+..
T Consensus       629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~  681 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDV  681 (717)
T ss_pred             HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHH
Confidence            6677888887763 3322  23333345666664433 233455555544444

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.95  E-value=0.13  Score=42.69  Aligned_cols=131  Identities=17%  Similarity=0.238  Sum_probs=82.3

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH-----HHHHHHHHHHHh
Q 007863           97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQL  171 (587)
Q Consensus        97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-----~~~~l~~~l~~l  171 (587)
                      ...+.+|..+.-++.++. ...++.+.+.+..++.....+........++..+..+++..++-     ..+.+.+.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            457788888888888876 33345566677778877776655556666777777777766432     234566666666


Q ss_pred             cC--CCCHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcc-cCchh-HHHHHHHHHHH
Q 007863          172 CQ--DDMPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQ-DDQDS-VRLLAVEGCGA  228 (587)
Q Consensus       172 ~~--~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-vr~~a~~~l~~  228 (587)
                      +.  .++..+...+++.|..-+..-.. ..+.....+.+.++.+ ++++. +|..|.-+|.+
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            66  67777888888887765432211 3345566777777774 44444 66666655543

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=94.93  E-value=2.2  Score=36.81  Aligned_cols=164  Identities=15%  Similarity=0.157  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccH
Q 007863          413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL  490 (587)
Q Consensus       413 vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~  490 (587)
                      ....++..++.+...+|...  ....++..+-++-.+++...|.++-.++|..++.+|++.+.+ ++|.-.+. .+....
T Consensus        16 aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~~   93 (198)
T PF08161_consen   16 AWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQP   93 (198)
T ss_pred             HHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCCc
Confidence            33445555555555555321  112233334444455667788888888888888888775432 33321111 111111


Q ss_pred             HHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcC------CCCccHHHHHHHHH-HHHHhhhch---------HHHHHhH
Q 007863          491 YRMTILQAISLLAPVMGSEITCSQLLPVVINASK------DRVPNIKFNVAKVL-QSLIPIVDQ---------SVVEKSI  554 (587)
Q Consensus       491 ~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~------d~~~~vR~~a~~~l-~~l~~~~~~---------~~~~~~i  554 (587)
                      -|.=-+-.+..-...-.-..|.++++|....+-+      .....+.....+++ .++..-++.         +.| ..+
T Consensus        94 ~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~~  172 (198)
T PF08161_consen   94 GRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PSF  172 (198)
T ss_pred             ccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HHH
Confidence            2222222222222233344567777776555421      12222222223333 233222211         233 455


Q ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863          555 RPCLVELSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       555 ~~~l~~l~~d~~~~Vr~~a~~al~~l  580 (587)
                      -+.|.+.+.| .++.|....+||..+
T Consensus       173 a~~L~~~L~~-~~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  173 AKLLGNALYD-QPDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHHHhc-CcchHHHHHHHHHHH
Confidence            5666666666 488999999998875

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=5.3  Score=41.07  Aligned_cols=364  Identities=10%  Similarity=0.019  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHHhc-----CC---CCHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHhcccCchhHHHHHHHH
Q 007863          159 ALKTELRTIYRQLC-----QD---DMPMVRRSAATNLGKFAATVEAA-----HLKSEIMSIFEELTQDDQDSVRLLAVEG  225 (587)
Q Consensus       159 ~~~~~l~~~l~~l~-----~~---~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~~  225 (587)
                      .....+++.+...+     .+   +++.-...+...+.++.+.+...     .+...+++.+.-...++.-..|..|++.
T Consensus       404 ~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~  483 (970)
T COG5656         404 ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEF  483 (970)
T ss_pred             hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHH
Confidence            33455555555544     11   34556667778888877754431     2334455555556677777889999999


Q ss_pred             HHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC-CCcccc---hHHHHHHhcCCChHHHHHHHH
Q 007863          226 CGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRSD---VVPAYVRLLRDNEAEVRIAAA  301 (587)
Q Consensus       226 l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~---l~~~l~~~l~d~~~~vr~~a~  301 (587)
                      +..+...++.......+.....+++++.+-.|+..|+-++..+...... +....+   .+.-+..+-++-+.++-..++
T Consensus       484 is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vM  563 (970)
T COG5656         484 ISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVM  563 (970)
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHH
Confidence            9999777776666777788888888999999999999999887754321 111222   333444444555555555555


Q ss_pred             HhH-HHHHHhhCHH--HHHHhHHHHHhH----hcCCC---c---HHHHHHHHHHHHhhh---hhhch-----HHHHHhHH
Q 007863          302 GKV-TKICRILNPE--LAIQHILPCVKE----LSSDS---S---QHVRSALATVIMGMA---PILGK-----DATIEQLL  360 (587)
Q Consensus       302 ~~l-~~l~~~~~~~--~~~~~~~~~l~~----~~~d~---~---~~vr~~a~~~l~~l~---~~~~~-----~~~~~~l~  360 (587)
                      ..+ +.+.+.+.+-  ...+.+...+.+    ++..+   +   ..-..+|...+..+.   -.+..     ......+.
T Consensus       564 e~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~sly  643 (970)
T COG5656         564 ESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLY  643 (970)
T ss_pred             HHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            543 2333333221  112333333322    22222   1   122233333333322   22221     11234566


Q ss_pred             HHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhCh-----h
Q 007863          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGV-----G  431 (587)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l~~~~~~~~~-~vr~~~~~~l~~l~~~~~~-----~  431 (587)
                      |.+.-.++..-.++-..++.-+....  +...++   ...+...+.++..++.. ..-..+..++..+....+.     .
T Consensus       644 pvi~Filkn~i~dfy~Ea~dildg~t--f~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~  721 (970)
T COG5656         644 PVISFILKNEISDFYQEALDILDGYT--FMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAG  721 (970)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhhhh--HHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcccccccc
Confidence            76666666666666666665554322  111111   12333333444444432 2233444455555443322     2


Q ss_pred             hHHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhh------cCCccHHHHHHHHHHHHhh
Q 007863          432 FFDDKLGALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI------NNPHYLYRMTILQAISLLA  503 (587)
Q Consensus       432 ~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l------~~~~~~~r~~a~~~l~~l~  503 (587)
                      .+..-+..+....+.++..  +-+..+++.+..++-.++.+. .++.+|.+.+..      .|.....+..++..+-+-.
T Consensus       722 ~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L-l~qy~plfi~vags~l~~~dElg~~sv~aleliinnl  800 (970)
T COG5656         722 IYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL-LSQYLPLFISVAGSGLKMIDELGPASVYALELIINNL  800 (970)
T ss_pred             chhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh-HHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHH
Confidence            3445567777777776655  667888888888888877753 344555444432      3334445555555443322


Q ss_pred             cccChH-----HHHHhHHHHHHhhcCC
Q 007863          504 PVMGSE-----ITCSQLLPVVINASKD  525 (587)
Q Consensus       504 ~~~~~~-----~~~~~~l~~l~~~l~d  525 (587)
                      -.-+.+     .......+.+..+.++
T Consensus       801 i~~P~eTLqiLe~qg~l~~FF~~wf~~  827 (970)
T COG5656         801 ILRPKETLQILEEQGYLQSFFEKWFSQ  827 (970)
T ss_pred             hcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence            211111     1134466777777777

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=94.87  E-value=0.11  Score=38.20  Aligned_cols=58  Identities=21%  Similarity=0.389  Sum_probs=44.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhc
Q 007863          447 DKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLAP  504 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~  504 (587)
                      ++.|.+|+.|++.++.+++.++...  ....+...+.+.+.|+  ....+..|+..+..++.
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~   78 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP   78 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            5688999999999999999888653  4566777777777766  45678888888877753

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=94.85  E-value=3.3  Score=38.50  Aligned_cols=177  Identities=17%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             HHHHHhcCCC-ChHHHHHHHHHhHHhhhhhchhhHhh---hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHH
Q 007863          361 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK  436 (587)
Q Consensus       361 ~~l~~~l~d~-~~~vr~~a~~~l~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~  436 (587)
                      ..+.++++-. -..|...|+.....+-+.+|.+.+.+   .+.|-+..++....-.||-..+..+....-.+|. ...+.
T Consensus        57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~  135 (307)
T PF04118_consen   57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPC  135 (307)
T ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHH
Confidence            3455555443 45799999999999999999876543   3457777777788888998888888776655666 33443


Q ss_pred             HHH---HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC------
Q 007863          437 LGA---LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG------  507 (587)
Q Consensus       437 l~~---~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~------  507 (587)
                      +-+   .++..+.|+..++-..+...+..+...+|.+.|-..+.-.+.     .++.+|..|+..+..-.....      
T Consensus       136 l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~  210 (307)
T PF04118_consen  136 LKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSL  210 (307)
T ss_pred             HHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccccc
Confidence            333   344556889999999999999999999998865555554443     366789999988876655433      


Q ss_pred             h-H---H----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863          508 S-E---I----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       508 ~-~---~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~  543 (587)
                      . +   .    -..-++..+...+.|++.-|++.++..|-.-.+
T Consensus       211 ~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  211 SSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             chHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence            1 0   0    023466778888999999999999998876654

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=94.84  E-value=0.79  Score=42.46  Aligned_cols=133  Identities=14%  Similarity=0.099  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---h-----hhchHHHHHhhhc--------CCccHHHHHHHH
Q 007863          434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---A-----MQHIVPQVLEMIN--------NPHYLYRMTILQ  497 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~-----~~~~~~~l~~~l~--------~~~~~~r~~a~~  497 (587)
                      .+.++|.++.++.|.+..+|..++.++..+........   +     .+.+.+.+...+.        +....+=..+..
T Consensus       117 ~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~  196 (282)
T PF10521_consen  117 WPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYP  196 (282)
T ss_pred             hhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHH
Confidence            35678888888888888999999999888887665443   2     1333334444433        344556667777


Q ss_pred             HHHHhhccc---Ch---HHHHHhHH-HHHHhhcC----CCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCC
Q 007863          498 AISLLAPVM---GS---EITCSQLL-PVVINASK----DRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSED  564 (587)
Q Consensus       498 ~l~~l~~~~---~~---~~~~~~~l-~~l~~~l~----d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d  564 (587)
                      ++..+....   +.   ......++ ..++..+.    -+.+.+|...++.+..++..+|..  .+.+.++|.+.+.+.+
T Consensus       197 ~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~n  276 (282)
T PF10521_consen  197 ALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILEN  276 (282)
T ss_pred             HHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcC
Confidence            777775421   11   11122222 22333322    235889999999999999988765  5667889999988777


Q ss_pred             CC
Q 007863          565 PD  566 (587)
Q Consensus       565 ~~  566 (587)
                      +.
T Consensus       277 pf  278 (282)
T PF10521_consen  277 PF  278 (282)
T ss_pred             CC
Confidence            65

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=94.79  E-value=3.6  Score=38.64  Aligned_cols=69  Identities=22%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC
Q 007863          177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ  251 (587)
Q Consensus       177 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~  251 (587)
                      ..-++-+.+.++.+.++++  ...+..+..-..++.|++..||..|+..|+.++..    +....+.+.+.++++
T Consensus        38 ~k~k~lasq~ip~~fk~fp--~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn  106 (460)
T KOG2213|consen   38 SKEKRLASQFIPRFFKHFP--SLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN  106 (460)
T ss_pred             hHHHHHHHHHHHHHHhhCc--hhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence            4556667777777777664  35556666666777777777888888777777664    245556666666655

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=94.78  E-value=3.9  Score=38.99  Aligned_cols=185  Identities=10%  Similarity=0.057  Sum_probs=110.4

Q ss_pred             hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh------chHHHHHhHHHHHHH-hcCCCChHHHHHHHHHhHHhhhhhch
Q 007863          319 HILPCVKELSSDSSQHVRSALATVIMGMAPIL------GKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGI  391 (587)
Q Consensus       319 ~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~------~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~i~~~~~~  391 (587)
                      +++..+...+.+.+.....++.-+++.++..=      -...+.+.++..+.+ ---|.+..++-+++++|..+.--..+
T Consensus       315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n  394 (604)
T KOG4500|consen  315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN  394 (604)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence            36677777777888888888888898887532      223344444444443 33456778888899999887633322


Q ss_pred             h-hH-hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hh-HHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHH
Q 007863          392 D-LL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF-FDDKLGALCMQWLKDKVYS-IRDAAANNVKRLA  464 (587)
Q Consensus       392 ~-~~-~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~-~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~  464 (587)
                      . .+ ...+...+...++...+.+....+..+..+...-..   +. -.+.++.-+..|-+.++.. |-....+.+..++
T Consensus       395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI  474 (604)
T KOG4500|consen  395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI  474 (604)
T ss_pred             hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence            2 11 123444555556666677666665555554432110   00 0245677778888888776 7777878887777


Q ss_pred             HHhChhh-----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863          465 EEFGPDW-----AMQHIVPQVLEMINNPHYLYRMTILQAISLLA  503 (587)
Q Consensus       465 ~~~~~~~-----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~  503 (587)
                      ++.....     .....+..+..+++..+......|+-++..+.
T Consensus       475 kHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~  518 (604)
T KOG4500|consen  475 KHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTE  518 (604)
T ss_pred             HhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHH
Confidence            7532211     12345666677766666555556665555444

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.78  E-value=2.7  Score=37.09  Aligned_cols=131  Identities=17%  Similarity=0.188  Sum_probs=62.8

Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCC-CchHHHHHH-HHHHHHHHHHhCCCCcccc
Q 007863          203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMV-ANQLYELCEAVGPEPTRSD  280 (587)
Q Consensus       203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~a-~~~l~~l~~~~~~~~~~~~  280 (587)
                      ....+..+..++..+.|..|+..+........     ...++.+...+.+ .+|.+--.. ...++.+...      .+.
T Consensus        52 ~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~------~~~  120 (213)
T PF08713_consen   52 LYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK------HPE  120 (213)
T ss_dssp             HHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH------HGG
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh------hHH
Confidence            34444555555555566666555554332211     1234444444433 345444443 3334444322      134


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP  348 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                      +.+.+.+.+++++.-+|..++..+......    ...+.++..+...+.|++..||.+...+|..++.
T Consensus       121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~  184 (213)
T PF08713_consen  121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK  184 (213)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            555555666666555555555554433332    1124445555555566666666666666665553

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=94.73  E-value=3.8  Score=38.54  Aligned_cols=256  Identities=16%  Similarity=0.166  Sum_probs=132.6

Q ss_pred             cchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHH
Q 007863          140 TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVR  219 (587)
Q Consensus       140 ~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr  219 (587)
                      ..+..|..+++..++++ ++.....++--..++.|.+..||..|++.|..++..    +..+.+.+.+.++++       
T Consensus        39 k~k~lasq~ip~~fk~f-p~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn-------  106 (460)
T KOG2213|consen   39 KEKRLASQFIPRFFKHF-PSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN-------  106 (460)
T ss_pred             HHHHHHHHHHHHHHhhC-chhhhHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH-------
Confidence            34555677777777777 345566677778899999999999999999998874    566777777777776       


Q ss_pred             HHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC----cccchHHHHHHhcCCChHH
Q 007863          220 LLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRSDVVPAYVRLLRDNEAE  295 (587)
Q Consensus       220 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~  295 (587)
                      .+.   +..+..+..                . .+..+|..+...+..=...++.+.    ....++.-+...+.|-+.+
T Consensus       107 k~s---l~~Lf~~~~----------------~-~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge  166 (460)
T KOG2213|consen  107 KAS---LTGLFGQIE----------------V-GDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE  166 (460)
T ss_pred             HHH---HHHHHhhhh----------------h-hhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH
Confidence            111   222211111                0 133444444444332222222111    1123445555555665544


Q ss_pred             HHHHHHHhHHHHHHhh---CHHHHHHhHHHHHhHh-----cCCCcHHHHHHHHHHHHhhhhhh----chHHHHHhHHHHH
Q 007863          296 VRIAAAGKVTKICRIL---NPELAIQHILPCVKEL-----SSDSSQHVRSALATVIMGMAPIL----GKDATIEQLLPIF  363 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~---~~~~~~~~~~~~l~~~-----~~d~~~~vr~~a~~~l~~l~~~~----~~~~~~~~l~~~l  363 (587)
                      -=...+..|+.+...-   |++. ..++......+     ++-++..+-.-.+.|+..-...|    +...+..++-..+
T Consensus       167 ef~lfm~~L~~lk~~~~k~~~a~-lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y~n~~~  245 (460)
T KOG2213|consen  167 EFTLFMDILASLKSLQTKAGEAR-LQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEYLNKHI  245 (460)
T ss_pred             HHHHHHHHHHhhhcccCCCCHHH-HHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHHHHhhh
Confidence            4444444454443321   2221 23333333222     22234455555555555444444    3333333322222


Q ss_pred             HHhcCC-CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhC
Q 007863          364 LSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       364 ~~~l~d-~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~~  429 (587)
                      +..--| ...+.+...+.+|+++++....+.. ...+|.+.+++.      +..+.....-++++..+...+|
T Consensus       246 ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a-~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg  317 (460)
T KOG2213|consen  246 IPHHFDKLTEERKLDLLKALAEMSSYTTAQAA-RQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLG  317 (460)
T ss_pred             cccccccchHHHHHHHHHHHHHhCccchHHHH-HHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHh
Confidence            222122 2356777888999998877644433 456677766653      2234444445555555444444

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.69  E-value=4.5  Score=39.26  Aligned_cols=270  Identities=14%  Similarity=0.025  Sum_probs=133.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhcccCc--hhHHHHHHHHHHHHhcccCh----hhhhhchHH
Q 007863          176 MPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEP----QDCVAHILP  244 (587)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~  244 (587)
                      +..+-.+|.+.++.+...-.-     .+....++......+.++.  ..+......++..  +.+++    ......++.
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~  136 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLA  136 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHH
Confidence            556777788888877643210     1222334444444443332  2333333333332  22222    122233344


Q ss_pred             HHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHH
Q 007863          245 VIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHIL  321 (587)
Q Consensus       245 ~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  321 (587)
                      .+...-+ =++..+-...+.++..+....+....  ....+|.+...+-+....+|..|...+..+...++++......+
T Consensus       137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~  216 (372)
T PF12231_consen  137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV  216 (372)
T ss_pred             HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence            3333332 23445555555566665554432111  12356666666666777889888888888877777764333322


Q ss_pred             HHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863          322 PCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       322 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~  401 (587)
                      ....+....+. .+-...++-+..+...-+......++...+..++++.-                 +..-.+....+..
T Consensus       217 ~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~-----------------~~~w~~~n~wL~v  278 (372)
T PF12231_consen  217 LEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR-----------------LDSWEHLNEWLKV  278 (372)
T ss_pred             HHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch-----------------hhccHhHhHHHHH
Confidence            22222111222 44444444444443322222233344445555553321                 1112233556677


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-HHH-----HHHHHHHHcCCCch----HHHHHHHHHHHHHHH
Q 007863          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-DDK-----LGALCMQWLKDKVY----SIRDAAANNVKRLAE  465 (587)
Q Consensus       402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-~~~-----l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~  465 (587)
                      ....++++++.+|..+..+...+......+.. .+.     ..|+..+.-.....    ++|..++..++.+..
T Consensus       279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly  352 (372)
T PF12231_consen  279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY  352 (372)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence            77778888889999998888887765533221 112     23443332222233    677777777766653

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.65  E-value=2  Score=42.29  Aligned_cols=71  Identities=14%  Similarity=0.188  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHc----------CCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHH
Q 007863          434 DDKLGALCMQWL----------KDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAI  499 (587)
Q Consensus       434 ~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l  499 (587)
                      ...++|.++.++          .|+.|.+|.-|+..+..+++.++...  ....++..+.+.+.|+  .+.....++..+
T Consensus       286 lh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL  365 (576)
T KOG2549|consen  286 LHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGL  365 (576)
T ss_pred             HHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHH
Confidence            345566666553          46789999999999999999888764  3355666666666665  577788888888


Q ss_pred             HHhhc
Q 007863          500 SLLAP  504 (587)
Q Consensus       500 ~~l~~  504 (587)
                      ..++.
T Consensus       366 ~~lg~  370 (576)
T KOG2549|consen  366 SELGH  370 (576)
T ss_pred             HHhhh
Confidence            88775

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.62  E-value=15  Score=45.10  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH----hChhh------hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEE----FGPDW------AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~----~~~~~------~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~  504 (587)
                      ..+++.+...+...+.+++..+..++..+...    +|...      +.+.+++.+..+-.++.|.-|.+++..|+.+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            45688888889999999999999999887653    33221      336677777777788999999999999999888


Q ss_pred             ccChHHH---HHhHHHHHHhhcCCCCcc--------HHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccH
Q 007863          505 VMGSEIT---CSQLLPVVINASKDRVPN--------IKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDV  569 (587)
Q Consensus       505 ~~~~~~~---~~~~l~~l~~~l~d~~~~--------vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~V  569 (587)
                      .+...+.   ...++..+...+.|...+        ++......+..+......+    .....++..+..-+.+++..|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            7775432   334444444455554222        3333333333333322221    233344555555567888899


Q ss_pred             HHHHHHHHHHHHHHhhc
Q 007863          570 RFFATQALQSKDQVMMS  586 (587)
Q Consensus       570 r~~a~~al~~l~~~~~~  586 (587)
                      |..+.+.|..+++..|.
T Consensus      1143 R~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGK 1159 (3550)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999988764

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=94.52  E-value=2.6  Score=36.35  Aligned_cols=70  Identities=14%  Similarity=0.188  Sum_probs=38.7

Q ss_pred             HhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHH
Q 007863          287 RLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI  356 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  356 (587)
                      .+++-.....-..++..++.+...+|..  .....++..+.++-.+++...|..+=.+++.....+|++.+.
T Consensus         7 ~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL   78 (198)
T PF08161_consen    7 SLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVL   78 (198)
T ss_pred             HHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence            3333334444455555555555555543  233444445555555666666777777777777777766554

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.47  E-value=5.1  Score=38.90  Aligned_cols=263  Identities=13%  Similarity=0.091  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHhHHHHHHh------hCHHHHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHh--hhhhhchHHHHHhHHHH
Q 007863          293 EAEVRIAAAGKVTKICRI------LNPELAIQHILPCVKELSSDS--SQHVRSALATVIMG--MAPILGKDATIEQLLPI  362 (587)
Q Consensus       293 ~~~vr~~a~~~l~~l~~~------~~~~~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~--l~~~~~~~~~~~~l~~~  362 (587)
                      +.++-..|++.++.+...      ++.+. ...++......+.++  +..+......++..  +...+-.....+.++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~-~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDF-ASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            567888888888887653      22222 122333333444333  23333333333322  11111111122333333


Q ss_pred             HHHhcC-CCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHH-
Q 007863          363 FLSLLK-DEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG-  438 (587)
Q Consensus       363 l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~-  438 (587)
                      +...-+ =.+..+-...+..+.++.......  ......+|.+...+-+....+|..+......+...++++......+ 
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~  217 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVL  217 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            333322 234455555566666655443321  1123455666555556666777776666666655555432222111 


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc-----cChHHHHH
Q 007863          439 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV-----MGSEITCS  513 (587)
Q Consensus       439 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~-----~~~~~~~~  513 (587)
                      +.+...+.+.  .+.                    +.+.+.+.+++.+++...  .+.+.-+.+...     +....+.+
T Consensus       218 ~~~~~~~~~~--~~~--------------------~~~~~~L~~mi~~~~~~~--~a~~iW~~~i~LL~~~~~~~w~~~n  273 (372)
T PF12231_consen  218 EDLQRSLENG--KLI--------------------QLYCERLKEMIKSKDEYK--LAMQIWSVVILLLGSSRLDSWEHLN  273 (372)
T ss_pred             HHhccccccc--cHH--------------------HHHHHHHHHHHhCcCCcc--hHHHHHHHHHHHhCCchhhccHhHh
Confidence            1111111111  222                    233444444444421110  111111111111     22234577


Q ss_pred             hHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-----HHHH-hHHHHHHHhcCCCCc----cHHHHHHHHHHHH
Q 007863          514 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-----VVEK-SIRPCLVELSEDPDV----DVRFFATQALQSK  580 (587)
Q Consensus       514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-----~~~~-~i~~~l~~l~~d~~~----~Vr~~a~~al~~l  580 (587)
                      ..+.....+++++++.+|..|..+...++-....+     .... -..|....+-.....    .++..+...+..+
T Consensus       274 ~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~l  350 (372)
T PF12231_consen  274 EWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNL  350 (372)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhch
Confidence            88888889999999999999999999887654332     2222 234555555444444    6777776666544

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.41  E-value=0.72  Score=40.78  Aligned_cols=132  Identities=16%  Similarity=0.133  Sum_probs=75.1

Q ss_pred             hhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcC-CCCHHHHHHH-HHHHHHHHHHHhhhhhHHH
Q 007863          125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSA-ATNLGKFAATVEAAHLKSE  202 (587)
Q Consensus       125 ~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a-~~~l~~l~~~~~~~~~~~~  202 (587)
                      ....++.++-.++....+..|+.++.......+.    ..++.+...+. -+++.+-... ...++.+....      +.
T Consensus        51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~----~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~~  120 (213)
T PF08713_consen   51 ELYELADELWESGYREERYLALLILDKRRKKLTE----EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------PE  120 (213)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H----HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------GG
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH----HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------HH
Confidence            3344555556666666666666655443332222    23444444433 2455555544 33344443221      44


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863          203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (587)
Q Consensus       203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (587)
                      ..+.+.+.++++++-+|+.++.++......    ...+.++..+.....|++..||.+...+|..++.
T Consensus       121 ~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~  184 (213)
T PF08713_consen  121 ALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK  184 (213)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            666777778888887887777665444333    2455677777777788888888888888777654

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.40  E-value=7.8  Score=40.73  Aligned_cols=360  Identities=11%  Similarity=0.065  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCc-----hhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC--
Q 007863          179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ-----DSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ--  251 (587)
Q Consensus       179 vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~--  251 (587)
                      -|+.....+....+.++ +...+.+...+.+++.+.+     ...-.+++.++..++..++..  ...-+|.+.+.+.  
T Consensus       440 YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t--~~~~i~rl~~~~asi  516 (982)
T KOG2022|consen  440 YRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGET--ESTWIPRLFETSASI  516 (982)
T ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcc--hhHHHHHHHHhcccc
Confidence            56666677666666666 3555666666777766554     445567777888888888763  2223444444332  


Q ss_pred             ---CCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHh
Q 007863          252 ---DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK  325 (587)
Q Consensus       252 ---d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~  325 (587)
                         -.++..-..+...+|..+..+++.. ..+..+|.+.+.++.+..  -..+...+..+++.+..+  .+...++....
T Consensus       517 k~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~  594 (982)
T KOG2022|consen  517 KLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCY  594 (982)
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHH
Confidence               2378888889999999998887643 344578888888875443  334555588888866544  33344444444


Q ss_pred             HhcCCC--cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc-------CC--CChHHHHHHHHH---hHHhhhhh-c
Q 007863          326 ELSSDS--SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL-------KD--EFPDVRLNIISK---LDQVNQVI-G  390 (587)
Q Consensus       326 ~~~~d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-------~d--~~~~vr~~a~~~---l~~i~~~~-~  390 (587)
                      ..+...  ....|..+.+++|.+.....++....++...+..++       ..  +.++-+...+-.   +..+...+ +
T Consensus       595 e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~  674 (982)
T KOG2022|consen  595 EVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLIN  674 (982)
T ss_pred             HHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCC
Confidence            444332  357888889999988877765554444333322221       11  122222222222   22222111 0


Q ss_pred             ---------------------hhhHhhhhHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHH
Q 007863          391 ---------------------IDLLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQW  444 (587)
Q Consensus       391 ---------------------~~~~~~~~~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~  444 (587)
                                           .-.+.+.++|.+.+.+.  -.+..+-..++.....-.+..+..   ...+.+.+.+.++
T Consensus       675 ~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~  754 (982)
T KOG2022|consen  675 KKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRF  754 (982)
T ss_pred             CCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHh
Confidence                                 01234556677666543  233444444444333322333333   1234555555554


Q ss_pred             cCCCchHHHHHHHHHHHHHH-HHhChhhh-------hhchHHHHHhhhc----CCccHHHHHHHHHHHHhhcccCh----
Q 007863          445 LKDKVYSIRDAAANNVKRLA-EEFGPDWA-------MQHIVPQVLEMIN----NPHYLYRMTILQAISLLAPVMGS----  508 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~-~~~~~~~~-------~~~~~~~l~~~l~----~~~~~~r~~a~~~l~~l~~~~~~----  508 (587)
                      ...+...    ++.....+. ..++.+..       ....+...+.+..    .++...-...+.++..+.+..+.    
T Consensus       755 ~~~~~a~----tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~  830 (982)
T KOG2022|consen  755 LTSCLAV----TLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEP  830 (982)
T ss_pred             ccchHHH----HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCcccc
Confidence            4332211    111111111 11111110       0111111111111    22444555666666666654321    


Q ss_pred             --HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch
Q 007863          509 --EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       509 --~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                        ..+..-+++....+++.+.+-.-.++++.+..+...-.+
T Consensus       831 ~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s  871 (982)
T KOG2022|consen  831 SMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS  871 (982)
T ss_pred             chHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence              125566777888889988877777888888877665444

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.38  E-value=2.7  Score=37.49  Aligned_cols=148  Identities=16%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             cHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhH
Q 007863           22 DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETC  101 (587)
Q Consensus        22 d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~  101 (587)
                      +++.|..|+..|+.-      ....+++-|.++.+    ..+...+...+-...+.+....        +.     ....
T Consensus         8 ~~~~Re~Al~eLsk~------r~~~~~La~~LW~s----~G~i~~LLqEIisiYp~l~~~~--------Lt-----~~~s   64 (262)
T PF04078_consen    8 NPETRENALLELSKK------RESFPDLAPLLWHS----FGTIAALLQEIISIYPALSPPN--------LT-----ARQS   64 (262)
T ss_dssp             SHHHHHHHHHHHHHT------CCC-TTHHHHHHTS----TTHHHHHHHHHHGGGGGTTTT----------------HHHH
T ss_pred             CcchHHHHHHHHHHh------hhcccchhHHHHcC----CChHHHHHHHHHHHcccCCCcc--------cC-----HHHH
Confidence            566799998777543      12346677777763    3344444444444444333111        10     0111


Q ss_pred             HHH-HHHHHHHHHHhhcC------hhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHH-----HHHHHHH
Q 007863          102 VRD-KAVESLCRIGSQMR------EQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALK-----TELRTIY  168 (587)
Q Consensus       102 vr~-~a~~~l~~l~~~~~------~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~-----~~l~~~l  168 (587)
                      .|- .|...+..++.+-.      ..++--++.|++....+.. ....|..+.+.++.+.+.-+++..     .+++|++
T Consensus        65 nRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplc  144 (262)
T PF04078_consen   65 NRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLC  144 (262)
T ss_dssp             HHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHH
Confidence            121 22223333333211      1123456788886544433 355788889999998886666544     3677888


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHH
Q 007863          169 RQLCQDDMPMVRRSAATNLGKFAA  192 (587)
Q Consensus       169 ~~l~~~~~~~vR~~a~~~l~~l~~  192 (587)
                      ...++.++...|..|...+.++..
T Consensus       145 Lr~me~GselSKtvAtfIlqKIL~  168 (262)
T PF04078_consen  145 LRIMEFGSELSKTVATFILQKILL  168 (262)
T ss_dssp             HHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHc
Confidence            888888877777777777666554

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.29  E-value=7.7  Score=40.23  Aligned_cols=150  Identities=16%  Similarity=0.067  Sum_probs=93.7

Q ss_pred             cccHHHHHHHhcCc-cHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-C-CchHHHHHHHHHhcccccCcC-----
Q 007863            8 LYPIAVLIDELKND-DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-D-DDDEVLLAMAEELGVFIPYVG-----   79 (587)
Q Consensus         8 ~~~~~~l~~~l~s~-d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~-~~~~v~~~~~~~l~~~~~~~~-----   79 (587)
                      .++|+.|++++.+. =.+-|+.|++.|..+++.+..+..-.-+-|++..+. | .+++....+.+.+..+...-.     
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~  100 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVM  100 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhc
Confidence            45799999999964 779999999999999887654433333334443322 2 245565555555543322110     


Q ss_pred             -Ccc--------------hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhH-----hhhhHHHHHHhhcCCCC
Q 007863           80 -GLE--------------YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV-----VEHFIPLVKRLAAGEWF  139 (587)
Q Consensus        80 -~~~--------------~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-----~~~ll~~~~~l~~~~~~  139 (587)
                       +..              ..+..+.++...+...|..||..+++.+..+.+.-+.+.-     .+.-+.-++.+..|...
T Consensus       101 dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE  180 (970)
T KOG0946|consen  101 DDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSRE  180 (970)
T ss_pred             ccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhh
Confidence             000              1234445666666778999999999999999988776421     11122334555666667


Q ss_pred             cchhhHHhhhhhhccCCC
Q 007863          140 TARVSSCGLFHVAYPSAP  157 (587)
Q Consensus       140 ~~r~~a~~l~~~~~~~~~  157 (587)
                      .+|..++.++..+.+..+
T Consensus       181 ~IRNe~iLlL~eL~k~n~  198 (970)
T KOG0946|consen  181 PIRNEAILLLSELVKDNS  198 (970)
T ss_pred             hhchhHHHHHHHHHccCc
Confidence            778888777766665554

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.22  E-value=0.47  Score=46.43  Aligned_cols=140  Identities=14%  Similarity=0.203  Sum_probs=76.4

Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCch-hHHHHHHHHHHHHhc---ccC----
Q 007863          163 ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGK---LLE----  234 (587)
Q Consensus       163 ~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~-~vr~~a~~~l~~l~~---~~~----  234 (587)
                      .++.-+...+.+.++..|+.|++.|..       +.-...++|.|..++.+.-. ++-....+.|..+..   .+-    
T Consensus       207 lYy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~  279 (576)
T KOG2549|consen  207 LYYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN  279 (576)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc
Confidence            344444455556788999998888764       23345677777776665421 111112222222211   111    


Q ss_pred             --hhhhhhchHHHHHHhc----------CCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcCCC--hHHHHH
Q 007863          235 --PQDCVAHILPVIVNFS----------QDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLRDN--EAEVRI  298 (587)
Q Consensus       235 --~~~~~~~l~~~l~~~~----------~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~  298 (587)
                        -+.+...++|.++.++          .|..|.+|..|+..+..++..++...  ....+...+.+.+.|+  .+....
T Consensus       280 i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~Y  359 (576)
T KOG2549|consen  280 IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHY  359 (576)
T ss_pred             cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhh
Confidence              1345566677666554          24567777777777777777665422  1223444555555443  355666


Q ss_pred             HHHHhHHHHHH
Q 007863          299 AAAGKVTKICR  309 (587)
Q Consensus       299 ~a~~~l~~l~~  309 (587)
                      .++..|..++.
T Consensus       360 Gai~gL~~lg~  370 (576)
T KOG2549|consen  360 GAIAGLSELGH  370 (576)
T ss_pred             hHHHHHHHhhh
Confidence            66666666654

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.11  E-value=4.4  Score=44.74  Aligned_cols=217  Identities=15%  Similarity=0.177  Sum_probs=126.9

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhcccC---chhHHHHHHHHHHHHhcccCh---hhhhhc
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEAAH--LKSEIMSIFEELTQDD---QDSVRLLAVEGCGALGKLLEP---QDCVAH  241 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~--~~~~i~~~l~~l~~d~---~~~vr~~a~~~l~~l~~~~~~---~~~~~~  241 (587)
                      ..+..+--+||....+++-.+.+..++-.  -++.+.+.+.......   ...+-+.+-.++.-+.+.+-+   ......
T Consensus       849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~  928 (1610)
T KOG1848|consen  849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD  928 (1610)
T ss_pred             HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence            44556667788888888888888776521  1555666655444322   233444455555555443321   223445


Q ss_pred             hHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC-------C----------------------CcccchHHHHHHhcCC
Q 007863          242 ILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-------E----------------------PTRSDVVPAYVRLLRD  291 (587)
Q Consensus       242 l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-------~----------------------~~~~~l~~~l~~~l~d  291 (587)
                      +++.+..... ..+-.+-..|+..+..+...+..       +                      ..+-.++..+..++.|
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence            5555555443 23444555555555554443221       0                      0011256667778899


Q ss_pred             ChHHHHHHHHHhHHHHHHhh----CHHHHHHhHHHHHhHhcCC------CcH---HH----HHHHHHHHHhhhhhhchH-
Q 007863          292 NEAEVRIAAAGKVTKICRIL----NPELAIQHILPCVKELSSD------SSQ---HV----RSALATVIMGMAPILGKD-  353 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~~~d------~~~---~v----r~~a~~~l~~l~~~~~~~-  353 (587)
                      +-.+||..|++.+-++...-    ++..|..-++..+..++..      ++|   ..    -.+.+-.++.+++.+... 
T Consensus      1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred             chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence            99999999999998887654    4444545555555555541      111   11    233455556666555422 


Q ss_pred             ----------HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhh
Q 007863          354 ----------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  386 (587)
Q Consensus       354 ----------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~  386 (587)
                                ..-+.++.++..+..+.++++..+++.++..+.
T Consensus      1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence                      122567778888889999999999999988765

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=94.11  E-value=5.4  Score=37.74  Aligned_cols=61  Identities=8%  Similarity=-0.033  Sum_probs=47.3

Q ss_pred             CCcHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh
Q 007863          409 RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP  469 (587)
Q Consensus       409 ~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  469 (587)
                      ..|+.|....+.+..+.+......      ....++..+...++++..+|-..+++++..+...+..
T Consensus       132 ~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  132 EYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            458999999999988887643222      1244667777788999999999999999999887655

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.10  E-value=4.3  Score=36.60  Aligned_cols=72  Identities=18%  Similarity=0.276  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHc-----C-C----CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHH
Q 007863          433 FDDKLGALCMQWL-----K-D----KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQA  498 (587)
Q Consensus       433 ~~~~l~~~l~~~l-----~-d----~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~  498 (587)
                      +...++|.++.++     . +    +...+|..|+..++..++.|+..+  ....+..++.+..-|.  .+.....|+++
T Consensus       274 Y~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkg  353 (450)
T COG5095         274 YLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKG  353 (450)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhh
Confidence            3455666666654     1 1    234699999999999999998764  2345555555543333  35567788888


Q ss_pred             HHHhhc
Q 007863          499 ISLLAP  504 (587)
Q Consensus       499 l~~l~~  504 (587)
                      +..+..
T Consensus       354 ls~l~k  359 (450)
T COG5095         354 LSILSK  359 (450)
T ss_pred             hhhhch
Confidence            877764

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=12  Score=42.32  Aligned_cols=234  Identities=13%  Similarity=0.144  Sum_probs=114.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHh
Q 007863          251 QDKSWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK  325 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~  325 (587)
                      .-.++..|..|.+.++.+......+...   +.....+.++..|.+..||......+..+...++..  ++.+.++|...
T Consensus        51 ~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~li~~wl  130 (1312)
T KOG0803|consen   51 LKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSLIPPWL  130 (1312)
T ss_pred             hccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhh
Confidence            3445555666666666555443322111   122333445556666666666666666666655443  34455555554


Q ss_pred             HhcCCCcHHHHHHHHHHHHhhhhhhchH----HHHHhHHHHHHHhc--------CC-----------CChHHHHHHHHHh
Q 007863          326 ELSSDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLL--------KD-----------EFPDVRLNIISKL  382 (587)
Q Consensus       326 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l--------~d-----------~~~~vr~~a~~~l  382 (587)
                      -...|....|-.+|...+......-...    .+.+.+.+++.+.+        .|           ....|...++.++
T Consensus       131 ~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l  210 (1312)
T KOG0803|consen  131 GGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISSSLLLL  210 (1312)
T ss_pred             heecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHHHHHHH
Confidence            4445555555555554444332210000    01122222222221        11           1123334444555


Q ss_pred             HHhhhhhchhhHhhh---------hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCCch
Q 007863          383 DQVNQVIGIDLLSQS---------LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDKVY  450 (587)
Q Consensus       383 ~~i~~~~~~~~~~~~---------~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~  450 (587)
                      ..+....|.+.-...         --..+-.+.+++.+.+|.+..+.+..+.+.+..-   .-...+.+.+.....+.+ 
T Consensus       211 ~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-  289 (1312)
T KOG0803|consen  211 LKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSIDSLD-  289 (1312)
T ss_pred             HHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccccccc-
Confidence            555544443321111         1233445678889999999999888887765432   123566777777776665 


Q ss_pred             HHHHHHHHHHHHHHHHhChhh------hhhchHHHHHhhhc
Q 007863          451 SIRDAAANNVKRLAEEFGPDW------AMQHIVPQVLEMIN  485 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~~~~~------~~~~~~~~l~~~l~  485 (587)
                      -|--.....+..+...+...+      ....++|.+.+++.
T Consensus       290 ~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir  330 (1312)
T KOG0803|consen  290 HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR  330 (1312)
T ss_pred             cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence            333334444443334444333      23567777777655

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.05  E-value=4.6  Score=36.76  Aligned_cols=59  Identities=15%  Similarity=0.123  Sum_probs=34.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHH-hChhhhh-hchHHHHHhhh-cCCccHHHHHHHHHHHHhhc
Q 007863          446 KDKVYSIRDAAANNVKRLAEE-FGPDWAM-QHIVPQVLEMI-NNPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       446 ~d~~~~vr~~a~~~l~~l~~~-~~~~~~~-~~~~~~l~~~l-~~~~~~~r~~a~~~l~~l~~  504 (587)
                      +++++.+|...+++|-.++.. -|.+.+. ..+.|.+.++. +.++..+|.++-.....+..
T Consensus       254 RepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  254 REPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            367788888888888777653 3333333 44555555542 33456666666555544443

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=93.99  E-value=2.2  Score=39.59  Aligned_cols=38  Identities=11%  Similarity=0.032  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863          198 HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       198 ~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      ..++.++|.+..++.|..+.+|..++.++..+....+.
T Consensus       115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~  152 (282)
T PF10521_consen  115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA  152 (282)
T ss_pred             HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence            34445555555555555555666666666555554443

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.86  E-value=1.1  Score=38.57  Aligned_cols=71  Identities=20%  Similarity=0.239  Sum_probs=39.3

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  546 (587)
                      +..++.+.+...+++..+|..|+..+..+.+.-=.  .-...+|.+..+.+|+++.+|..|...+..+.++.+
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLv--nP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~   77 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLV--NPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE   77 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCC--ChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH
Confidence            34555555555556666666666666555541100  013456666666666666666666666666655543

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=93.80  E-value=8.1  Score=38.71  Aligned_cols=146  Identities=10%  Similarity=-0.047  Sum_probs=98.7

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH----HH
Q 007863          436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----IT  511 (587)
Q Consensus       436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~  511 (587)
                      .....+.....|-++.+|..+...++..+..+..-++.-..+...--++.|.+..+|....+.+..+....+..    .+
T Consensus       275 icdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f  354 (740)
T COG5537         275 ICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRF  354 (740)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            34455666778888899999999998888766555444444545555678888899999999888887644322    35


Q ss_pred             HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863          512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                      .+++...++.++.-...-||..+++.+..+....-   ....-.-.+..+.-|-.|+-|....+++..+++..
T Consensus       355 ~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~---L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~  424 (740)
T COG5537         355 VERFKDRILEFLRTDSDCVRICSIKSLCYLRILGV---LSSSEILIVSSCMLDIIPDSRENIVESVESICKID  424 (740)
T ss_pred             HHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhcc---cchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHH
Confidence            66666666666543333399999999887754321   11223344555677888887777888888887764

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=93.65  E-value=7.2  Score=37.66  Aligned_cols=211  Identities=14%  Similarity=0.037  Sum_probs=120.3

Q ss_pred             hcCCCChHHHHHHHHHhHHhhhhhch-hhHhhhhHHHHH--HHhcC-CCcHHHHHHHHHHHHHHHhh-ChhhHHHHHHHH
Q 007863          366 LLKDEFPDVRLNIISKLDQVNQVIGI-DLLSQSLLPAIV--ELAED-RHWRVRLAIIEYIPLLASQL-GVGFFDDKLGAL  440 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~i~~~~~~-~~~~~~~~~~l~--~~~~~-~~~~vr~~~~~~l~~l~~~~-~~~~~~~~l~~~  440 (587)
                      ++.++ .+||.++.+.+..++..... ..+.+.-++.+.  .+..+ ++..-|..|++.+..+.+.- |.+.+...++..
T Consensus        34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra  112 (371)
T PF14664_consen   34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA  112 (371)
T ss_pred             HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence            44454 88888888888776643211 111111122221  22233 34556888999888887753 444555677888


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH------HHHh
Q 007863          441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI------TCSQ  514 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~------~~~~  514 (587)
                      +.....+++...|..++..+.+++-....-.+...-+..+.+.+.|+....-...+.++-.+...-....      -.+.
T Consensus       113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~  192 (371)
T PF14664_consen  113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLES  192 (371)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHH
Confidence            8888888999999999999999886433222234445666666666665666666666666665322211      1333


Q ss_pred             HHHHHHhhc---CCCCc--cHHHHHHHHHHHHHhhhch------HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863          515 LLPVVINAS---KDRVP--NIKFNVAKVLQSLIPIVDQ------SVVEKSIRPCLVELSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       515 ~l~~l~~~l---~d~~~--~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~  579 (587)
                      ++..+...-   ...+.  +.-..+..++..+.+....      +.+  .-+..|...+.-+.+++|......+-.
T Consensus       193 l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~d  266 (371)
T PF14664_consen  193 LLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFD  266 (371)
T ss_pred             HHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            444443331   11122  2334556666666655432      111  234445555566777788776655543

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=93.59  E-value=1.8  Score=35.45  Aligned_cols=48  Identities=10%  Similarity=0.230  Sum_probs=26.0

Q ss_pred             hHHHHHHHHHHHHHHHHhChhhhh-hchHHHHHhhhcCCccHHHHHHHHHH
Q 007863          450 YSIRDAAANNVKRLAEEFGPDWAM-QHIVPQVLEMINNPHYLYRMTILQAI  499 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~~l~~~~~~~r~~a~~~l  499 (587)
                      .++...++++++.++.....+.+. ..+++.+.+.+.+++.  |..|+++|
T Consensus       100 ~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl  148 (148)
T PF08389_consen  100 EELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL  148 (148)
T ss_dssp             HHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence            566666666666666544444322 3466666666644443  55555543

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.53  E-value=0.29  Score=42.02  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=58.5

Q ss_pred             HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863          512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      ....++.+++++.+++..+|..|++.+..+...-=-.+  ...+|.|..|..|+++.+|..|.+.+..+.+.
T Consensus         6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK   75 (187)
T PF12830_consen    6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEK   75 (187)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHH
Confidence            46677888889999999999999999999976521122  36899999999999999999999999888764

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=93.51  E-value=6.9  Score=37.01  Aligned_cols=156  Identities=13%  Similarity=0.133  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHhhC-hhhHHHHHHHHHHH-Hc---CCCchHHHHH-HHHHHHHHHHHhChhh------hhhchHHH
Q 007863          412 RVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WL---KDKVYSIRDA-AANNVKRLAEEFGPDW------AMQHIVPQ  479 (587)
Q Consensus       412 ~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l---~d~~~~vr~~-a~~~l~~l~~~~~~~~------~~~~~~~~  479 (587)
                      .+|+..++.+..+..... .+.....++|.+.. .+   ++..+..|+. .+.+++.++..++...      +.+.++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            356666777766665544 22223333333332 22   3344455544 3455566666666531      22344444


Q ss_pred             HHhhhcC---CccHHHHHHHHHHHHhhcccChH------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---
Q 007863          480 VLEMINN---PHYLYRMTILQAISLLAPVMGSE------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---  547 (587)
Q Consensus       480 l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---  547 (587)
                      ...+.++   ..+..|......+..+...+-..      ...+.++..+.-.++++..+|-..++.++..+...+..   
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~  201 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNP  201 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence            4445543   24689999999888888754321      23566777777788999999999999999999887765   


Q ss_pred             ----HHHHHhHHHHHHH---hcCCCCc
Q 007863          548 ----SVVEKSIRPCLVE---LSEDPDV  567 (587)
Q Consensus       548 ----~~~~~~i~~~l~~---l~~d~~~  567 (587)
                          ..+....++.+..   .+.|++.
T Consensus       202 ~~~~~F~~~y~~~il~~if~vltD~~H  228 (319)
T PF08767_consen  202 EFANQFYQQYYLDILQDIFSVLTDSDH  228 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence                2333444444444   3566654

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=93.42  E-value=7.6  Score=37.20  Aligned_cols=109  Identities=8%  Similarity=0.068  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh--hhhhchHHHHHhh-----hcCCccHHHHHHHHHHHHhhcc-c
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--WAMQHIVPQVLEM-----INNPHYLYRMTILQAISLLAPV-M  506 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~-----l~~~~~~~r~~a~~~l~~l~~~-~  506 (587)
                      +.++..+..++.+.+......+.-++|++++.-..-  +..+.++..+.+.     -.|.|-++..+++.++.++.-- .
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            457888889999999999999999999998743322  1223444444443     3456778888999999998753 2


Q ss_pred             ChHHH-HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863          507 GSEIT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       507 ~~~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~  543 (587)
                      ....+ ...+...++..++-..|.|...-+.++..+..
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d  431 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD  431 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence            22222 23345566667777777777777777666543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=93.29  E-value=7.8  Score=37.00  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=52.8

Q ss_pred             HhHHHHHHhhcCCC-CccHHHHHHHHHHHHHhhhchH--HH-HHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          513 SQLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQS--VV-EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       513 ~~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~~~~~--~~-~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      -+++..+..++... +|.+=..|+.=+++.+..++..  .+ .-.....+.++++-+|++||.+|..|+..+..
T Consensus       365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            35667777777654 4777788899999998887653  11 12356778889999999999999999988764

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=93.26  E-value=7.1  Score=36.40  Aligned_cols=140  Identities=13%  Similarity=0.105  Sum_probs=82.8

Q ss_pred             HHHHHhcCCC-chHHHHHHHHHHHHHHHHhCCCCcccc---hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHH
Q 007863          244 PVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTRSD---VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAI  317 (587)
Q Consensus       244 ~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~  317 (587)
                      ..+.++++-. ...|-..|.+....+...+|.+....+   ..+.+..++......||-..+..+....-.+++.  ...
T Consensus        57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l  136 (307)
T PF04118_consen   57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCL  136 (307)
T ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHH
Confidence            3334444332 345677777777777777775433332   3455566666666777777777777766666653  223


Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  388 (587)
                      +.++..+...+.|++..+-..+...+..+...++.+.+...+.-.+.     .++.+|..|+..+..-...
T Consensus       137 ~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~  202 (307)
T PF04118_consen  137 KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPK  202 (307)
T ss_pred             HHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCc
Confidence            34444455556667777777777777777777666544333222222     3577888877776654433

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=93.24  E-value=0.18  Score=30.55  Aligned_cols=30  Identities=33%  Similarity=0.277  Sum_probs=21.9

Q ss_pred             HhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          552 KSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       552 ~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ...+|.|.+++.+++++|+..|..|+..++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456777777777777777777777777665

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=93.12  E-value=18  Score=40.71  Aligned_cols=69  Identities=16%  Similarity=0.114  Sum_probs=55.7

Q ss_pred             HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ...+..++..|++.+-.|-.++|.+|.++.-.-..+   .+....++.|.+|+..++..+-+.++.||..+.
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLl  600 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLL  600 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            457788888999999899999999999997654432   344567899999999999999999988887763

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=93.05  E-value=0.43  Score=35.18  Aligned_cols=57  Identities=14%  Similarity=0.154  Sum_probs=37.6

Q ss_pred             CCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCC--ChHHHHHHHHHhHHhh
Q 007863          330 DSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVN  386 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~  386 (587)
                      +.+|.+|..|++.+..++..++.  ......+...+.+.+.|+  ....+.+|+.+|..+.
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG   77 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG   77 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            45677788877777777777653  234456666666666654  3456777777777663

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=92.96  E-value=8.8  Score=36.67  Aligned_cols=70  Identities=9%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             hchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccChHHH---HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863          474 QHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEIT---CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~  543 (587)
                      -.++..+.+++..++ +.+-..|+.=|+++.+..+....   .-..-..+.+++++++++||.+|+.++..+..
T Consensus       365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            346666777665443 56667788888888877665421   12234567888999999999999999987754

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.70  E-value=5.3  Score=33.47  Aligned_cols=77  Identities=18%  Similarity=0.068  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHhcc-cCchhHHHHHHHHHHHHhccc
Q 007863          158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKS---EIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLL  233 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~---~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      ....+.+...+..+++++++.-|..++..+...++..+.+.+..   ..+..+...++ ++.+.++..++.++..+....
T Consensus        20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~   99 (165)
T PF08167_consen   20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI   99 (165)
T ss_pred             HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence            44566777778888899889999999888888888764433322   22333333343 345677888888888887655


Q ss_pred             C
Q 007863          234 E  234 (587)
Q Consensus       234 ~  234 (587)
                      .
T Consensus       100 ~  100 (165)
T PF08167_consen  100 R  100 (165)
T ss_pred             c
Confidence            4

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=92.68  E-value=2.9  Score=33.96  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=58.0

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhch
Q 007863          278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSSD-SSQHVRSALATVIMGMAPILGK  352 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                      ..+.+..+.+-+...++.|...|+..|..+.+.+|....    ...++..+.+++.+ .+..|+.-+...+...+..+..
T Consensus        35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            456777888888888999999999999999998887532    34566667777766 6788888888888888776653

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.63  E-value=0.43  Score=36.72  Aligned_cols=55  Identities=16%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             CccHHHHHHHHHHHHHhhhchH-HH--HHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          527 VPNIKFNVAKVLQSLIPIVDQS-VV--EKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       527 ~~~vR~~a~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ++.+-..||.=|+.++..++.. .+  .-.....+.+|++.+|++||..|..|+..+.
T Consensus        57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4555556666666666665432 11  1235667777788888888888888877664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.54  E-value=0.76  Score=38.11  Aligned_cols=131  Identities=15%  Similarity=0.173  Sum_probs=78.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc---ChHHH-HHhHHHHHHhh
Q 007863          447 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---GSEIT-CSQLLPVVINA  522 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~-~~~~l~~l~~~  522 (587)
                      ....++|..+.-++.++.+..+.+ +.+.+-+.+...+.+++..-...++.++..+.+..   +...+ .+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            345678888888888776444333 45555555655665555556666777777766532   22222 34566666666


Q ss_pred             cC--CCCccHHHHHHHHHHHHHhhhch-HHHHHhHHHHHHHhcC-CCCcc-HHHHHHHHHH
Q 007863          523 SK--DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSE-DPDVD-VRFFATQALQ  578 (587)
Q Consensus       523 l~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-Vr~~a~~al~  578 (587)
                      ..  .++..+...+++++..-+..-.- ..+.+...+.|.++.. +++.. ||..|.=+|-
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            65  56778888888888766543221 3455667788888764 44444 6766665554

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.46  E-value=23  Score=40.19  Aligned_cols=148  Identities=7%  Similarity=-0.017  Sum_probs=89.7

Q ss_pred             HHHHHHH-HHcCCCchHHHHHHHHHHHHHHH--HhC-hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH
Q 007863          436 KLGALCM-QWLKDKVYSIRDAAANNVKRLAE--EFG-PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT  511 (587)
Q Consensus       436 ~l~~~l~-~~l~d~~~~vr~~a~~~l~~l~~--~~~-~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~  511 (587)
                      .++..+. ....+..|.+|.+++..+..++-  .++ .+.-++.+...+...++|.+..+|..|+.++..+.+.......
T Consensus      1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~ 1605 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFV 1605 (1710)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccc
Confidence            3333343 33457789999999988876653  233 1123467888888899999889999999999998764322211


Q ss_pred             HHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863          512 CSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       512 ~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                      ....-+...... ...+...+..|+..|+.++-.++..  .+....+..+-...+++ .-++..+.+++..+....
T Consensus      1606 ~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth 1680 (1710)
T KOG1851|consen 1606 SDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTH 1680 (1710)
T ss_pred             hHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHh
Confidence            111222222222 2234555667888889888776543  22222333333334555 458888888888776543

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.43  E-value=3  Score=39.48  Aligned_cols=105  Identities=22%  Similarity=0.245  Sum_probs=61.4

Q ss_pred             HHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH---HHHhHHH
Q 007863          443 QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI---TCSQLLP  517 (587)
Q Consensus       443 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~l~  517 (587)
                      .-++..+..||..|...+..+........  -...+++.+..+..|.+..+|......+..++....++.   +..-+++
T Consensus        65 ~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~  144 (393)
T KOG2149|consen   65 SQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMP  144 (393)
T ss_pred             hhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHH
Confidence            34556666666666666666655422111  123455555556666666677776666666554443332   3455566


Q ss_pred             HHHhhcCCCCccHHHHHHHHHHHHHhhhch
Q 007863          518 VVINASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       518 ~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                      .+...++.-.+.+|.-+...+..+...+++
T Consensus       145 yi~~AMThit~~i~~dslkfL~~Ll~~~~p  174 (393)
T KOG2149|consen  145 YISSAMTHITPEIQEDSLKFLSLLLERYPD  174 (393)
T ss_pred             HHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence            666666666777777777777766666654

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.38  E-value=10  Score=35.90  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=88.4

Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHH--HHHHHHHHHHcC----CCchHHHHHHHHHHHHHHHHh--Chhhhhh
Q 007863          403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLK----DKVYSIRDAAANNVKRLAEEF--GPDWAMQ  474 (587)
Q Consensus       403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~l~~~~--~~~~~~~  474 (587)
                      .+++..+++.++..++..+..+....+.....  ..+++.+++++.    .++.+++..++.+++.+.+.-  ...+...
T Consensus       111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~  190 (312)
T PF03224_consen  111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS  190 (312)
T ss_dssp             HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence            34667778888888888888877654432222  244555555554    355667788888888887521  1222345


Q ss_pred             chHHHHHhhh-----cCC--ccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCCC-CccHHHHHHHHHHHHHhh
Q 007863          475 HIVPQVLEMI-----NNP--HYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKDR-VPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       475 ~~~~~l~~~l-----~~~--~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~l~~~  544 (587)
                      ..++.+.+.+     .+.  +.+....++.++=.++-  ..-.......++|.+...+++. ...|-+.++.++.++...
T Consensus       191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~  270 (312)
T PF03224_consen  191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK  270 (312)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred             CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            5666666666     222  34444455554433331  1111112344777777776653 445555677777777765


Q ss_pred             hch----HHHHHhHHHHHHHhcCC--CCccHHH
Q 007863          545 VDQ----SVVEKSIRPCLVELSED--PDVDVRF  571 (587)
Q Consensus       545 ~~~----~~~~~~i~~~l~~l~~d--~~~~Vr~  571 (587)
                      -..    .-+...+++.+..+...  +|+++..
T Consensus       271 ~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~e  303 (312)
T PF03224_consen  271 APKSNIELMVLCGLLKTLQNLSERKWSDEDLTE  303 (312)
T ss_dssp             SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHH
T ss_pred             cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHH
Confidence            442    23344566777766543  3555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.35  E-value=18  Score=40.96  Aligned_cols=204  Identities=18%  Similarity=0.142  Sum_probs=119.1

Q ss_pred             HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhh---hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh--hHHHHH
Q 007863          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ---SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKL  437 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l  437 (587)
                      +.+-+...++..+..|...+++++.....+....   .....+.++..|.+.+||......+..+...++..  .+...+
T Consensus        46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l  125 (1312)
T KOG0803|consen   46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL  125 (1312)
T ss_pred             HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence            3444445567777777777777776654443322   22233345567788888888888777777666543  233455


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh----hhhhchHHHHHhhh--------cC-----------CccHHHHH
Q 007863          438 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMI--------NN-----------PHYLYRMT  494 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l--------~~-----------~~~~~r~~  494 (587)
                      +|...-...|....|-.+|-..+......-...    .+...+.+.+.+.+        .|           ...++-..
T Consensus       126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s  205 (1312)
T KOG0803|consen  126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS  205 (1312)
T ss_pred             hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence            666666666777777776666655443311110    02233333333321        11           13455566


Q ss_pred             HHHHHHHhhcccChHHHH-------HhH--HHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhc
Q 007863          495 ILQAISLLAPVMGSEITC-------SQL--LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS  562 (587)
Q Consensus       495 a~~~l~~l~~~~~~~~~~-------~~~--l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~  562 (587)
                      ++.++..+....|.+.-.       +.+  -..+.++++++++.+|.+..+.+..+++.+..-   .....+.|.+....
T Consensus       206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~  285 (1312)
T KOG0803|consen  206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSI  285 (1312)
T ss_pred             HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccc
Confidence            667777776554443211       111  235667889999999999999999888876542   34456677777766


Q ss_pred             CCCC
Q 007863          563 EDPD  566 (587)
Q Consensus       563 ~d~~  566 (587)
                      .+.+
T Consensus       286 ~~~d  289 (1312)
T KOG0803|consen  286 DSLD  289 (1312)
T ss_pred             cccc
Confidence            6666

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=92.29  E-value=23  Score=39.92  Aligned_cols=70  Identities=20%  Similarity=0.159  Sum_probs=54.8

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863          436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  505 (587)
                      .++..+++.|++....|...+|.+|.+|......+.   +....++.+.+++.+++..+-..+..++.++..+
T Consensus       530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcC
Confidence            467788899999999999999999998886554442   3356788888888888888888888888887753

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.26  E-value=3.1  Score=33.75  Aligned_cols=98  Identities=5%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH----HHHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~  520 (587)
                      +.+++|..-...+..+..  ...|    ....+..+.+.+++++..+...|+..+..+.+++|...    ....++..+.
T Consensus        17 l~~~dw~~ileicD~In~--~~~~----~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~   90 (142)
T cd03569          17 LGEPDLASILEICDMIRS--KDVQ----PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELK   90 (142)
T ss_pred             cCccCHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            345666654444444431  0111    24566677777888999999999999999999888753    2456677777


Q ss_pred             hhcC-CCCccHHHHHHHHHHHHHhhhchH
Q 007863          521 NASK-DRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       521 ~~l~-d~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      +++. ..++.||..++..+..+...+..+
T Consensus        91 ~l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          91 DLIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            7765 467889999999999998887654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.82  E-value=5.4  Score=37.88  Aligned_cols=104  Identities=17%  Similarity=0.096  Sum_probs=45.4

Q ss_pred             cCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh---HHHHHHHHH
Q 007863          367 LKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALC  441 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l  441 (587)
                      ++..+..||..+...+..........  .....+++.+..++.|.+..+|....+.+..+.....++.   +..-+++.+
T Consensus        67 lkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~~yi  146 (393)
T KOG2149|consen   67 LKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLMPYI  146 (393)
T ss_pred             hcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHHHHH
Confidence            34444455555544444443331100  0112233444444455555555555555544433332222   122334444


Q ss_pred             HHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863          442 MQWLKDKVYSIRDAAANNVKRLAEEFGPD  470 (587)
Q Consensus       442 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                      ...+..-.+++|.-+...+..+...+++.
T Consensus       147 ~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  147 SSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            44455555555555555555555555444

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.68  E-value=15  Score=36.43  Aligned_cols=84  Identities=14%  Similarity=0.021  Sum_probs=46.7

Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCCh--HHHHHHHHHhHHhhhhhchhhHh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDLLS  395 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~i~~~~~~~~~~  395 (587)
                      +.++-.+.+.++.++...+.+++--++........+    .++.++..+..+.+.  ++...+.-+|+.+--..-...+.
T Consensus       449 ~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~e----evl~lL~Pi~~std~pie~~~~asltLg~vFvGtcngD~t  524 (881)
T COG5110         449 PPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAE----EVLELLQPIMFSTDSPIEVVFFASLTLGSVFVGTCNGDLT  524 (881)
T ss_pred             chHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHH----HHHHHhhhhhcCCCCcHHHHHHHHHhhhheEeeccCchHH
Confidence            445666777888888888888877776554433333    344555555555555  44444444444432222233344


Q ss_pred             hhhHHHHHHH
Q 007863          396 QSLLPAIVEL  405 (587)
Q Consensus       396 ~~~~~~l~~~  405 (587)
                      ..++..+.+-
T Consensus       525 s~ilqtf~Er  534 (881)
T COG5110         525 SLILQTFVER  534 (881)
T ss_pred             HHHHHHHHHh
Confidence            4555555443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=91.50  E-value=11  Score=34.37  Aligned_cols=140  Identities=16%  Similarity=0.142  Sum_probs=80.7

Q ss_pred             HHHHHHHHcCCCc-----hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHH-HHhhcccChHH
Q 007863          437 LGALCMQWLKDKV-----YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI-SLLAPVMGSEI  510 (587)
Q Consensus       437 l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l-~~l~~~~~~~~  510 (587)
                      .+|-++..+.++.     ..++ .++..|+.+++..|...     +..++..+....++-+...+..+ ..+.+.+.++ 
T Consensus       112 ~LP~ll~~~d~~~~i~~~~~~~-~~A~~La~~a~~~~~~~-----La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-  184 (262)
T PF14225_consen  112 LLPRLLHAFDDPNPIQPDQECI-EIAEALAQVAEAQGLPN-----LARILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-  184 (262)
T ss_pred             HHHHHHHHhcccccccccHHHH-HHHHHHHHHHHhCCCcc-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-
Confidence            3555555555555     3444 55678888886544332     22222222222222222222222 2222333222 


Q ss_pred             HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +...++..+..++.+..+++|..+++.|..+.+..+.. .+...++..+.+++..+-+   ..|.+.++.+..+.|+
T Consensus       185 ~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~s  258 (262)
T PF14225_consen  185 HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSGS  258 (262)
T ss_pred             hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhccc
Confidence            34567778889999999999999999999999887542 3556677777777655433   5566666666665554

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=91.41  E-value=13  Score=35.24  Aligned_cols=184  Identities=9%  Similarity=0.078  Sum_probs=107.8

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-Chh------hH--H-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG------FF--D-DKLGALCMQWLKDKVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~------~~--~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                      ..+++.+...+..=+++.|+.+...++.+.+.- +..      .+  . +.++..+.....+++...  .+...+..+++
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHh
Confidence            355666666666666777777777766665432 111      11  1 345555666665544322  22222222221


Q ss_pred             Hh--ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHH---HHHhHHHHHHhhcCCCCccHHHHHHHH
Q 007863          466 EF--GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEI---TCSQLLPVVINASKDRVPNIKFNVAKV  537 (587)
Q Consensus       466 ~~--~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~  537 (587)
                      .-  ..-.+.+..+-.+++....++..+-.-|...+..+.....   .+.   ....+...+..++.++++..|..+++.
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence            10  0000123344456777888888888888888877664322   121   245667788889999999999999999


Q ss_pred             HHHHHhhhchHH-----H-HHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          538 LQSLIPIVDQSV-----V-EKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       538 l~~l~~~~~~~~-----~-~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      |+.+...-.+-.     + ...-+..+..++.|+..+||.-|-..++-+.
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV  282 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV  282 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence            999975433211     1 1345777888899999999999988887653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.38  E-value=23  Score=37.95  Aligned_cols=93  Identities=18%  Similarity=0.212  Sum_probs=72.3

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-  547 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-  547 (587)
                      .+++.....++.+++..+|..++.++......+...     +......|.+...+.+.+|-+-..|+.++.+++...|. 
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            456666677889999999999999998776644322     23456677888889999999999999999999888765 


Q ss_pred             --HHHHHhHHHHHHHhcCCCC
Q 007863          548 --SVVEKSIRPCLVELSEDPD  566 (587)
Q Consensus       548 --~~~~~~i~~~l~~l~~d~~  566 (587)
                        ..+.+.++|.+..++.|.-
T Consensus       882 v~sR~l~dvlP~l~~~~~~~~  902 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLKHLCQDSF  902 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence              4777889999998766543

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.26  E-value=7  Score=31.77  Aligned_cols=75  Identities=13%  Similarity=0.051  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .+..+..+..-+.+.++.|...++..|..+++++|..    .....++..+..++.+ .+..|+.-..+.+...+..+..
T Consensus        35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            3556666667778889999999999999999988862    2234456666667766 5677888888888777766553

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=91.12  E-value=20  Score=36.68  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=60.7

Q ss_pred             HHhhcccChHHHHHhHHHHHHhhc-CCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH----hcCCCCccHHHHHH
Q 007863          500 SLLAPVMGSEITCSQLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE----LSEDPDVDVRFFAT  574 (587)
Q Consensus       500 ~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~----l~~d~~~~Vr~~a~  574 (587)
                      +.+.+.+.+. ....++-.+..++ ..+...+|..+++.++.+++...++...+.+.|.|..    ++.|++|-++..|.
T Consensus       466 ~~~~~~l~~~-~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~AL  544 (559)
T PF14868_consen  466 SFFIQLLDPQ-LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHAL  544 (559)
T ss_pred             HHHHHhcChH-HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHH
Confidence            3333344443 2344555555555 5566779999999999999887776666667777666    58999999999999


Q ss_pred             HHHHHHHHH
Q 007863          575 QALQSKDQV  583 (587)
Q Consensus       575 ~al~~l~~~  583 (587)
                      +|++.+++.
T Consensus       545 eAF~~FAe~  553 (559)
T PF14868_consen  545 EAFGQFAER  553 (559)
T ss_pred             HHHHHHhcc
Confidence            999999874

>PF05536 Neurochondrin: Neurochondrin

Probab=91.01  E-value=21  Score=36.75  Aligned_cols=224  Identities=11%  Similarity=0.107  Sum_probs=131.3

Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHhcccChh-----hhhhch-HHHHHHhcCC-------CchHHHHHHHHHHHHHHHHh
Q 007863          206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQ-----DCVAHI-LPVIVNFSQD-------KSWRVRYMVANQLYELCEAV  272 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~l-~~~l~~~~~d-------~~~~vR~~a~~~l~~l~~~~  272 (587)
                      -...+++..+++-|..+.-.+.++.+.-+..     ...+.+ .+++.+++..       +....+..|...|..++.. 
T Consensus         9 ~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~-   87 (543)
T PF05536_consen    9 KCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRD-   87 (543)
T ss_pred             HHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCC-
Confidence            3444555555666666666666666543321     011111 2333444433       3345677777777777651 


Q ss_pred             CCC---CcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhh-CHHH-HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhh
Q 007863          273 GPE---PTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRIL-NPEL-AIQHILPCVKELSSDSSQHVRSALATVIMGM  346 (587)
Q Consensus       273 ~~~---~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~-~~~~-~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l  346 (587)
                      +.-   ...-.-+|.+.+.+...+. ++...|..+|..++.+- |++. .....++.+.+...+ +......+...+..+
T Consensus        88 ~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~L  166 (543)
T PF05536_consen   88 PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNL  166 (543)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHH
Confidence            111   1112368889888876666 88899999999988532 2222 223456666665555 556677777777776


Q ss_pred             hhhhchH------HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc--------hhhHhhhhHHHHHHHhcC-CCc
Q 007863          347 APILGKD------ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--------IDLLSQSLLPAIVELAED-RHW  411 (587)
Q Consensus       347 ~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--------~~~~~~~~~~~l~~~~~~-~~~  411 (587)
                      ....+.+      .....+++.+...+.......+..++..|+.+....+        ...+...+...+..++.+ ..+
T Consensus       167 ls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~  246 (543)
T PF05536_consen  167 LSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTP  246 (543)
T ss_pred             HHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCH
Confidence            6555422      1223455666666666566667777777777766552        112344555666666655 356


Q ss_pred             HHHHHHHHHHHHHHHhhChh
Q 007863          412 RVRLAIIEYIPLLASQLGVG  431 (587)
Q Consensus       412 ~vr~~~~~~l~~l~~~~~~~  431 (587)
                      .-|..++.....+.+.+|.+
T Consensus       247 ~~R~~al~Laa~Ll~~~G~~  266 (543)
T PF05536_consen  247 SQRDPALNLAASLLDLLGPE  266 (543)
T ss_pred             HHHHHHHHHHHHHHHHhChH
Confidence            77888888888877777653

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.98  E-value=3.7  Score=32.92  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHH-hHHHHHHHhcCC---CCccHHHHHHHHHHHHHHHhh
Q 007863          513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEK-SIRPCLVELSED---PDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~-~i~~~l~~l~~d---~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      ...+..+.+-++++++++...|+..|..+.+..|..   .+.. .++..|.++...   .++.||..+...+..++..++
T Consensus        36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~  115 (133)
T cd03561          36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            345555555566666677777777776666665542   1111 334445555443   355677777777776666655


Q ss_pred             c
Q 007863          586 S  586 (587)
Q Consensus       586 ~  586 (587)
                      +
T Consensus       116 ~  116 (133)
T cd03561         116 G  116 (133)
T ss_pred             C
Confidence            3

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.86  E-value=1.6  Score=33.67  Aligned_cols=27  Identities=15%  Similarity=0.172  Sum_probs=14.7

Q ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007863          243 LPVIVNFSQDKSWRVRYMVANQLYELC  269 (587)
Q Consensus       243 ~~~l~~~~~d~~~~vR~~a~~~l~~l~  269 (587)
                      -..+..+++++++.||..|+.+++.+.
T Consensus        88 K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   88 KERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            344455555666666666666655543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=90.80  E-value=0.44  Score=28.96  Aligned_cols=25  Identities=24%  Similarity=0.330  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHH
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANN  459 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +.+...+...+.|+++.||++|++.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            4567777777888888888887765

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.79  E-value=7.5  Score=31.32  Aligned_cols=97  Identities=14%  Similarity=0.151  Sum_probs=67.8

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH----HHHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~  520 (587)
                      +.+++|..-...+..+..  ...|    ....+..+.+.+++++..+...|+..+..+.+++|...    ....++..+.
T Consensus        14 l~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            446677665555555432  1111    23456667777889999999999999999999998753    2455666777


Q ss_pred             hhcCC------CCccHHHHHHHHHHHHHhhhch
Q 007863          521 NASKD------RVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                      +++..      .++.||..++..+..+...++.
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH  120 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            77643      5789999999999999877653

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=90.77  E-value=0.45  Score=28.70  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=17.7

Q ss_pred             hHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          514 QLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                      ..+|.+..+++++++.+|..++.+|+.++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            45566666666666666666666666553

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=90.66  E-value=0.25  Score=30.01  Aligned_cols=21  Identities=43%  Similarity=0.477  Sum_probs=9.3

Q ss_pred             hHHHHHHhcCCChHHHHHHHH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAA  301 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~  301 (587)
                      +...+...+.|+++.||++|+
T Consensus        19 v~~~i~~rl~D~s~~VR~aav   39 (42)
T PF12765_consen   19 VQSAIIRRLSDSSPSVREAAV   39 (42)
T ss_pred             HHHHHHHHhcCCChHHHHHHH
Confidence            344444444444444444444

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=90.62  E-value=20  Score=36.05  Aligned_cols=142  Identities=15%  Similarity=0.097  Sum_probs=92.2

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHH----HH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA----TI  356 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~  356 (587)
                      .-..+++...|.++.+|..+...++.....++.-...-..+.+.--.+.|.+..||....+.+..++...+...    +.
T Consensus       276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~  355 (740)
T COG5537         276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFV  355 (740)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            34566777889999999999999998877655433333345555567889999999999999998887765332    33


Q ss_pred             HhHHHHHHHhc-CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863          357 EQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       357 ~~l~~~l~~~l-~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  426 (587)
                      +.+...+..++ .|.+- ||..+.+.+..+....--   ...-+-.+..++-|..++-|....+.+..+++
T Consensus       356 eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg~L---~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK  422 (740)
T COG5537         356 ERFKDRILEFLRTDSDC-VRICSIKSLCYLRILGVL---SSSEILIVSSCMLDIIPDSRENIVESVESICK  422 (740)
T ss_pred             HHHHHHHHHHHhhccch-hhHHHHHHHHHHHHhccc---chhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            44444444544 45555 999999888876543211   12234444555667666655555555555444

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.53  E-value=7  Score=31.70  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=56.2

Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH----HHhHHHHHhHhcC-CCcHHHHHHHHHHHHhhhhhhch
Q 007863          278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGK  352 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                      ..+.+..+.+-++..++.+...|+..|..+.+.+|....    ...++..+.+++. ..+..||..++..+...+..++.
T Consensus        39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  118 (142)
T cd03569          39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN  118 (142)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            456777788888888999999999999999998887522    2345555555554 46778888888888888776654


Q ss_pred             H
Q 007863          353 D  353 (587)
Q Consensus       353 ~  353 (587)
                      +
T Consensus       119 ~  119 (142)
T cd03569         119 K  119 (142)
T ss_pred             C
Confidence            3

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=90.21  E-value=8.7  Score=34.74  Aligned_cols=131  Identities=17%  Similarity=0.201  Sum_probs=75.0

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcC------CccHHHHHHHHHHHHhhcc--cChHHHHHhHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN------PHYLYRMTILQAISLLAPV--MGSEITCSQLL  516 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~------~~~~~r~~a~~~l~~l~~~--~~~~~~~~~~l  516 (587)
                      +...+...|.+|+.+|..=   -|    ..+++|.+..++++      .|..+-.+.+.....+..+  +=.+++...++
T Consensus       207 ~dEs~~~~r~aAl~sLr~d---sG----lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm  279 (450)
T COG5095         207 LDESDEQTRDAALESLRND---SG----LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM  279 (450)
T ss_pred             HHHHHHHHHHHHHHHhccC---cc----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence            4455667788887776431   11    23344444444332      1333444444444444432  22345788888


Q ss_pred             HHHHhhc------CCC----CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCC--ccHHHHHHHHHHHHHH
Q 007863          517 PVVINAS------KDR----VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPD--VDVRFFATQALQSKDQ  582 (587)
Q Consensus       517 ~~l~~~l------~d~----~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~--~~Vr~~a~~al~~l~~  582 (587)
                      |.++.++      +++    ...+|..|+..++.++..++..  .....+...+.+..-|..  ..-...|.+++..+.+
T Consensus       280 PSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~k  359 (450)
T COG5095         280 PSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILSK  359 (450)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhch
Confidence            8877664      222    2348999999999999988765  344556666666433433  3456677777766544

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=90.15  E-value=20  Score=35.25  Aligned_cols=143  Identities=13%  Similarity=0.125  Sum_probs=79.2

Q ss_pred             ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC
Q 007863          429 GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG  507 (587)
Q Consensus       429 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~  507 (587)
                      .++.|...+++.+...  ....++|...++.|+.++   |.- .+.-.+.|.+..++......+.+....+....-..++
T Consensus       233 DpQ~fAEkLfk~~~~~--~er~E~klm~~~lisRli---G~HkL~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP  307 (616)
T KOG2229|consen  233 DPQGFAEKLFKQLLAC--KERFEVKLMLMKLISRLI---GIHKLFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVP  307 (616)
T ss_pred             ChhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHh---hhhHHHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCC
Confidence            3455556666655544  345566666666666554   432 2445578888888876655555444444444333444


Q ss_pred             hHHHHHhHHHHHH-hhcCCC-CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863          508 SEITCSQLLPVVI-NASKDR-VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       508 ~~~~~~~~l~~l~-~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~  579 (587)
                      ++ ..+.++..+. .+.+|. .+++-...+.++.+++...+. ...+.++.-|...-...+..| ..|+.++-.
T Consensus       308 ~d-~iEpl~k~Ian~FVtD~~spEv~~vgiN~iREic~Rvpl-aMteeLLqDLa~YK~sk~K~V-~maarSLI~  378 (616)
T KOG2229|consen  308 PD-IIEPLLKTIANNFVTDENSPEVMAVGINAIREICERVPL-AMTEELLQDLASYKTSKKKVV-MMAARSLIA  378 (616)
T ss_pred             hH-HhhHHHHHHHHHhcccCCCcceeehhhhHHHHHHhhcch-hhcHHHHHHHHHHhHHHHHHH-HHHHHHHHH
Confidence            44 3444444444 455664 678888888889888887653 223445555555544444444 444444433

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=90.11  E-value=21  Score=35.41  Aligned_cols=176  Identities=13%  Similarity=0.172  Sum_probs=89.3

Q ss_pred             cHHHHHHHHHHHHhhhhhhc---hH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHH
Q 007863          332 SQHVRSALATVIMGMAPILG---KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  405 (587)
Q Consensus       332 ~~~vr~~a~~~l~~l~~~~~---~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~  405 (587)
                      ++..-....++++.+.....   ++   .+.+.++|.+...|..+-.+.--.+.+-++.+.+........+.+...+..+
T Consensus        85 nP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~L  164 (435)
T PF03378_consen   85 NPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPL  164 (435)
T ss_dssp             -HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHH
T ss_pred             CcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            45555555566665554432   12   3456778888888876655555556666666665544222222222222223


Q ss_pred             hcCCCcHHHH---HHHHHHHHHHHhhChhhH----HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---hhhc
Q 007863          406 AEDRHWRVRL---AIIEYIPLLASQLGVGFF----DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---AMQH  475 (587)
Q Consensus       406 ~~~~~~~vr~---~~~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~  475 (587)
                      +...-|+.|.   +.++.+..+.+..+....    ...++.++.+++.++..+  ..+...|..+...+..+.   +...
T Consensus       165 l~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~  242 (435)
T PF03378_consen  165 LSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQ  242 (435)
T ss_dssp             TSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHH
T ss_pred             cCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3444454332   334444444443333221    245677777888776544  557889999999888764   3344


Q ss_pred             hHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChH
Q 007863          476 IVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       476 ~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      ++..++..++ .+....+...+..++.++-..|.+
T Consensus       243 I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  243 IFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            4444444443 445555556666666555444544

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=90.08  E-value=26  Score=36.43  Aligned_cols=304  Identities=13%  Similarity=0.122  Sum_probs=152.2

Q ss_pred             chHHHHHHHHHHHHHHHHhCCCCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHH-hhCHHHHHHhHHHHH---hHh-
Q 007863          254 SWRVRYMVANQLYELCEAVGPEPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICR-ILNPELAIQHILPCV---KEL-  327 (587)
Q Consensus       254 ~~~vR~~a~~~l~~l~~~~~~~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~~~~~l---~~~-  327 (587)
                      ++.+-..+.++++.+...+.-... .+..++.+.+++.  -.++|.+|+.++-++.. .+.|-... .++..+   .++ 
T Consensus       206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL-~lln~L~q~l~lf  282 (980)
T KOG2021|consen  206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKL-ALLNMLNQTLELF  282 (980)
T ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHH-HHHHHHHHHHHHH
Confidence            777888888888887766543322 3356777777776  56899999999777654 44443211 122222   111 


Q ss_pred             ---cCC--CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHH
Q 007863          328 ---SSD--SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  402 (587)
Q Consensus       328 ---~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l  402 (587)
                         ..|  .+..+-....+.+...    |-+     ++....++.+..++.+++.+...+-             ..+|.+
T Consensus       283 g~~s~dq~~d~df~e~vskLitg~----gve-----l~~i~s~lnseld~~~kqn~l~~ll-------------~~vpyl  340 (980)
T KOG2021|consen  283 GYHSADQMDDLDFWESVSKLITGF----GVE-----LTIIISQLNSELDTLYKQNVLSILL-------------EIVPYL  340 (980)
T ss_pred             hhhccccccCchHHHHHHHHHhhc----cee-----eehhHhhhhhccCHHHHHHHHHHHH-------------HHHHHH
Confidence               112  2333333333333332    211     1111222223444555554443332             245555


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHc------CCC----------chHHHHHHH
Q 007863          403 VELAEDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL------KDK----------VYSIRDAAA  457 (587)
Q Consensus       403 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l------~d~----------~~~vr~~a~  457 (587)
                      .+.+.++..++-......+......+..         ......+..++.+.-      .|.          ..++|..--
T Consensus       341 lq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk  420 (980)
T KOG2021|consen  341 LQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK  420 (980)
T ss_pred             HHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH
Confidence            5665555444444444433332221110         011111222222221      111          135666554


Q ss_pred             HHHHHHHHHhChhhhhhchHHHHHhh---hcCCccHHHHHHHHHHHHhhcccChHH------------HHHhHHHHHHh-
Q 007863          458 NNVKRLAEEFGPDWAMQHIVPQVLEM---INNPHYLYRMTILQAISLLAPVMGSEI------------TCSQLLPVVIN-  521 (587)
Q Consensus       458 ~~l~~l~~~~~~~~~~~~~~~~l~~~---l~~~~~~~r~~a~~~l~~l~~~~~~~~------------~~~~~l~~l~~-  521 (587)
                      ..+..+. ...++.+...+-..+...   ....+|..-+.|+..+-.+++.+..+.            ....+++.+.. 
T Consensus       421 ~fqdti~-~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~ts  499 (980)
T KOG2021|consen  421 NFQDTIV-VIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTS  499 (980)
T ss_pred             HHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHc
Confidence            4444443 345554433343333332   344578889999999988887654331            12233343332 


Q ss_pred             -hcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh------cCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          522 -ASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL------SEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       522 -~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l------~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                       .+..+++.|.....+.+.+-.+-+..   ...-.|.+...      +...+.+||.+|...+.++.+.+++
T Consensus       500 qv~~h~h~lVqLlfmE~ivRY~kff~~---esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkk  568 (980)
T KOG2021|consen  500 QVLAHDHELVQLLFMELIVRYNKFFST---ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKK  568 (980)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHhc---chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHH
Confidence             24455666666666666553333322   23345555553      3456789999999999988887764

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.90  E-value=23  Score=35.44  Aligned_cols=296  Identities=12%  Similarity=0.148  Sum_probs=152.7

Q ss_pred             HHHHHHHHHhcccCc---hhHHHHHHHHHHHHhc--ccChhhhhh--chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007863          201 SEIMSIFEELTQDDQ---DSVRLLAVEGCGALGK--LLEPQDCVA--HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG  273 (587)
Q Consensus       201 ~~i~~~l~~l~~d~~---~~vr~~a~~~l~~l~~--~~~~~~~~~--~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~  273 (587)
                      ..++..+..++++.+   ..+-..+.+++++-..  .++++....  .++..+...+++.  ..-..|.+++..+.....
T Consensus       152 ~~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~  229 (559)
T KOG2081|consen  152 SKVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSL  229 (559)
T ss_pred             HHHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhh
Confidence            334444444444332   3445555666665444  344332222  2444445555532  333445555444433221


Q ss_pred             C-CC---c------ccchHHHHHHh-cCCChHHHHHHHHHhHHHHHHhhCH------HHHHHhHHHHHhHhcCCCcHHHH
Q 007863          274 P-EP---T------RSDVVPAYVRL-LRDNEAEVRIAAAGKVTKICRILNP------ELAIQHILPCVKELSSDSSQHVR  336 (587)
Q Consensus       274 ~-~~---~------~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~~~~~l~~~~~d~~~~vr  336 (587)
                      . +.   .      ...+++...++ ....+.+-+.+..+.+..+++.+-.      +.+ -.++..+.-....++++|-
T Consensus       230 ~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evi  308 (559)
T KOG2081|consen  230 DRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVI  308 (559)
T ss_pred             hhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhh
Confidence            1 00   0      11122222222 2334456677777778777775422      211 1233334444566777777


Q ss_pred             HHHHHHHHhhhhhhch---HHHHHhHHHHHHHhc-------C---------CC---ChHHHHHHHHHhHHhhhhhchhhH
Q 007863          337 SALATVIMGMAPILGK---DATIEQLLPIFLSLL-------K---------DE---FPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       337 ~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-------~---------d~---~~~vr~~a~~~l~~i~~~~~~~~~  394 (587)
                      .........+....-.   +.....+-|++.+++       .         ++   ..+.|......+..+.-.+|.+.-
T Consensus       309 e~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~  388 (559)
T KOG2081|consen  309 EASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDEC  388 (559)
T ss_pred             hhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            7666666666544321   111111222222221       1         11   235677777777777777776643


Q ss_pred             hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHhChhh-
Q 007863          395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDW-  471 (587)
Q Consensus       395 ~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~-  471 (587)
                      .+.+.-.+.+  .+..|+.-.+++-.+..+++.+.++  .+.++|-+++.+.  +....+|..++..+|.+.+-+.... 
T Consensus       389 lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~  464 (559)
T KOG2081|consen  389 LKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPE  464 (559)
T ss_pred             HHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcH
Confidence            3333333222  4678999999999999998887654  3456666666553  3345599999999999988665432 


Q ss_pred             hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863          472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  505 (587)
                      ..+.+...+...+....  .--++..++..++..
T Consensus       465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~  496 (559)
T KOG2081|consen  465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSA  496 (559)
T ss_pred             HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHH
Confidence            23444444444454444  344455555555543

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.84  E-value=6.2  Score=31.97  Aligned_cols=76  Identities=11%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcCCC-Ccc---HHHHHHHHHHHHHhh
Q 007863          473 MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKDR-VPN---IKFNVAKVLQSLIPI  544 (587)
Q Consensus       473 ~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~-~~~---vR~~a~~~l~~l~~~  544 (587)
                      ....+..+.+.+.++++.+...|+..+..+..++|....    ...++..+.+++.++ ...   ||..++..+..+...
T Consensus        40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~  119 (140)
T PF00790_consen   40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEA  119 (140)
T ss_dssp             HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence            355677777888888999999999999999888876532    234666666655543 222   899999999988887


Q ss_pred             hchH
Q 007863          545 VDQS  548 (587)
Q Consensus       545 ~~~~  548 (587)
                      +...
T Consensus       120 f~~~  123 (140)
T PF00790_consen  120 FKSD  123 (140)
T ss_dssp             TTTS
T ss_pred             HCCC
Confidence            7543

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=89.44  E-value=8.7  Score=30.97  Aligned_cols=95  Identities=9%  Similarity=0.105  Sum_probs=62.4

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHh
Q 007863          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  482 (587)
Q Consensus       407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~  482 (587)
                      .+++|..-..++..+..  +.-|    ....+..+.+-++++++.+...|+..|..+++.+|..+.    ...++..+.+
T Consensus        15 ~~~dw~~ileicD~In~--~~~~----~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~k   88 (139)
T cd03567          15 REEDWEAIQAFCEQINK--EPEG----PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIK   88 (139)
T ss_pred             CCCCHHHHHHHHHHHHc--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHH
Confidence            35677765555554432  1112    233455666777888888888899999999888888752    3566667777


Q ss_pred             hhcC------CccHHHHHHHHHHHHhhcccC
Q 007863          483 MINN------PHYLYRMTILQAISLLAPVMG  507 (587)
Q Consensus       483 ~l~~------~~~~~r~~a~~~l~~l~~~~~  507 (587)
                      ++..      .+..||...+..+..-...++
T Consensus        89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          89 LVSPKYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             HhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            6642      356788888887777766544

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.01  E-value=11  Score=30.56  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhcccCc--hh--HHHHHHHHHHHHhc
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQ--DS--VRLLAVEGCGALGK  231 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~l~~d~~--~~--vr~~a~~~l~~l~~  231 (587)
                      ..+..+..+.+-+.+++|.+...++..|..++++.|..-.    ...++..+..++.+..  +.  ||..+...+...+.
T Consensus        39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            4466677777788889999999999999999998875221    2335566666555432  22  78888888887777


Q ss_pred             ccCh
Q 007863          232 LLEP  235 (587)
Q Consensus       232 ~~~~  235 (587)
                      .+..
T Consensus       119 ~f~~  122 (140)
T PF00790_consen  119 AFKS  122 (140)
T ss_dssp             HTTT
T ss_pred             HHCC
Confidence            6644

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=88.94  E-value=15  Score=32.15  Aligned_cols=133  Identities=15%  Similarity=0.131  Sum_probs=76.8

Q ss_pred             hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcC-CCC-cchhhHHhhhhhhccCCCHHHHHH
Q 007863           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAG-EWF-TARVSSCGLFHVAYPSAPEALKTE  163 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~-~~~-~~r~~a~~l~~~~~~~~~~~~~~~  163 (587)
                      ....++..+..++....|..|+..+....+...++.     ++.+..+... +++ .+-..+..+++.+...     .+.
T Consensus        46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~-----~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-----~~~  115 (208)
T cd07064          46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPED-----LPLLEELITTKSWWDTVDSLAKVVGGILLAD-----YPE  115 (208)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHHH-----HHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-----Chh
Confidence            344555667777777778888777776555554432     3333333322 222 2233333333333222     123


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      +.+.+.....+++...|+.++-+.-.+.+.    .-.+.+..++..+++|+..-|+++..-.|..++..
T Consensus       116 ~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~----~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~  180 (208)
T cd07064         116 FEPVMDEWSTDENFWLRRTAILHQLKYKEK----TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKT  180 (208)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHHc----cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence            456777888888888888777654333332    12345666777788888888888877777777665

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.92  E-value=45  Score=37.53  Aligned_cols=218  Identities=13%  Similarity=0.129  Sum_probs=120.3

Q ss_pred             HhcccCchhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhcCCC---chHHHHHHHHHHHHHHHHhCCCC---cccc
Q 007863          209 ELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQDK---SWRVRYMVANQLYELCEAVGPEP---TRSD  280 (587)
Q Consensus       209 ~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~---~~~vR~~a~~~l~~l~~~~~~~~---~~~~  280 (587)
                      .....+.-+||....+++-.+.+..++.  ..+..+++.+.......   ...+-+.+..+|.-+...+-+..   ....
T Consensus       849 ~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~  928 (1610)
T KOG1848|consen  849 SDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD  928 (1610)
T ss_pred             HHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence            3344556678988889988888877652  12555666665443322   34444455566655544322211   1123


Q ss_pred             hHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhCH-----------------------------HHHHHhHHHHHhHhcCC
Q 007863          281 VVPAYVRLL-RDNEAEVRIAAAGKVTKICRILNP-----------------------------ELAIQHILPCVKELSSD  330 (587)
Q Consensus       281 l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-----------------------------~~~~~~~~~~l~~~~~d  330 (587)
                      +++.+..+. +..|.++--.|+..+..++..+..                             +...-.++..+.+++.|
T Consensus       929 lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~d 1008 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCED 1008 (1610)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhcc
Confidence            444444433 233455666666666655554322                             11112245556678888


Q ss_pred             CcHHHHHHHHHHHHhhhhh----hchHHHHHhHHHHHHHhcC-------CC--ChHHH----HHHHHHhHHhhhhhch--
Q 007863          331 SSQHVRSALATVIMGMAPI----LGKDATIEQLLPIFLSLLK-------DE--FPDVR----LNIISKLDQVNQVIGI--  391 (587)
Q Consensus       331 ~~~~vr~~a~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~-------d~--~~~vr----~~a~~~l~~i~~~~~~--  391 (587)
                      +-..||..|++.+-++...    ++...+..-+..++..+|.       ++  ..+++    ...+-.++.+++.+..  
T Consensus      1009 sr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e~f 1088 (1610)
T KOG1848|consen 1009 SRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSENF 1088 (1610)
T ss_pred             chHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHHHH
Confidence            8899999999988777543    3443343334444444443       11  11221    1123333333333321  


Q ss_pred             ---------hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863          392 ---------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       392 ---------~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  426 (587)
                               -...+.++..+..+..+.++.+..+++.++..+..
T Consensus      1089 k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1089 KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence                     12235677888888899999999999988877654

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=88.89  E-value=15  Score=31.90  Aligned_cols=61  Identities=23%  Similarity=0.204  Sum_probs=25.7

Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 007863          206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC  269 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~  269 (587)
                      .+.....+++.-+|+.+..++......   +...+.+++.+..+..|++..||.+...+|..++
T Consensus       109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~  169 (197)
T cd06561         109 LLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYG  169 (197)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            334444444444444444443332222   1123334444444444444444444444444444

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=88.87  E-value=1.2  Score=37.02  Aligned_cols=59  Identities=17%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863          252 DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       252 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                      |.--.+|++|.+++..+...+........++..+...++| +.+||.-+...+..++...
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~   96 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA   96 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC
Confidence            4556788888888888887665555455677888888888 7888888888888886654

; PDB: 4A0C_A 1U6G_C.

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=88.63  E-value=31  Score=35.31  Aligned_cols=87  Identities=14%  Similarity=0.230  Sum_probs=57.0

Q ss_pred             HHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh----hhcCCccHHHH
Q 007863          419 EYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE----MINNPHYLYRM  493 (587)
Q Consensus       419 ~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~~~r~  493 (587)
                      ..++.+.+.+.++.+.+ ++..+...+ ..+...+|-+.++.++.+.+.+-++...+.+.|.+-.    ++.|++|.+++
T Consensus       463 ~l~~~~~~~l~~~~i~q-v~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q  541 (559)
T PF14868_consen  463 SLLSFFIQLLDPQLIEQ-VLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ  541 (559)
T ss_pred             HHHHHHHHhcChHHHHH-HHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence            33444444444444333 333334444 4455568888888888888766555455567776654    37899999999


Q ss_pred             HHHHHHHHhhccc
Q 007863          494 TILQAISLLAPVM  506 (587)
Q Consensus       494 ~a~~~l~~l~~~~  506 (587)
                      .|+.+++.+++.-
T Consensus       542 ~ALeAF~~FAe~T  554 (559)
T PF14868_consen  542 HALEAFGQFAERT  554 (559)
T ss_pred             HHHHHHHHHhccC
Confidence            9999999998754

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=88.58  E-value=31  Score=35.31  Aligned_cols=282  Identities=11%  Similarity=0.032  Sum_probs=130.4

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCc--HHHHHHHHHHHHhhhhhhchHHHH
Q 007863          279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--QHVRSALATVIMGMAPILGKDATI  356 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~  356 (587)
                      +..+-.+...++.++..+|.+++-.|+........+.+..    .+...+.|.+  ..|...+.-+++.+.-.--.+...
T Consensus       451 dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V~~----lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvt  526 (878)
T KOG2005|consen  451 DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEVLE----LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVT  526 (878)
T ss_pred             CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHHHH----HHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHH
Confidence            4466777778888888999999888887665545554433    4444444544  446655555665543211112222


Q ss_pred             HhHHHHHHHhcC--CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-
Q 007863          357 EQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-  433 (587)
Q Consensus       357 ~~l~~~l~~~l~--d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-  433 (587)
                      ..++..+..--.  -.+...|.-+   |+--.-.+|..+..+.+...+    ..-+..+|..+--.+.. +...|.... 
T Consensus       527 s~ilqtlmekse~El~d~~~RFL~---LGL~llflgkqe~~d~~~e~~----~~i~~~~~~~~~~lv~~-caYaGTGnvl  598 (878)
T KOG2005|consen  527 SSILQTLMEKSETELEDQWFRFLA---LGLALLFLGKQESVDAVVETI----KAIEGPIRKHESILVKS-CAYAGTGNVL  598 (878)
T ss_pred             HHHHHHHHHhhhhhhhchHHHHHH---HHHHHHHhcccchHHHHHHHH----HHhhhHHHHHHHHHHHH-hhccccCceE
Confidence            222222221111  0112233221   221122233332222222222    11122233332222222 211221110 


Q ss_pred             -HHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH
Q 007863          434 -DDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT  511 (587)
Q Consensus       434 -~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~  511 (587)
                       .+.  ..+...-.++... -.++-...|+.-.-.+|.+.-.+..+-.+-.++.=.++.+|.+.--+++-++..- +.  
T Consensus       599 ~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSN-Pq--  673 (878)
T KOG2005|consen  599 KIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSN-PQ--  673 (878)
T ss_pred             Eech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCC-Cc--
Confidence             111  1111122221111 0111122222222234544333445555555666677889988888888776432 21  


Q ss_pred             HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH-hcCCCCccHHHHHHHHHHH
Q 007863          512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~-l~~d~~~~Vr~~a~~al~~  579 (587)
                       -.++..+.++.+|.+.++-.+++-+++.+...-.+.. ...++..+.. ...|++.-.-.+.+++|-.
T Consensus       674 -~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNAR-la~mLrqlaSYyyKd~~~Lf~vriAQGL~h  740 (878)
T KOG2005|consen  674 -VNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNAR-LAQMLRQLASYYYKDSKALFVVRIAQGLVH  740 (878)
T ss_pred             -chHHHHHHHhccCcchHHHHHHHHHhccccCCcchHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence             3578889999999999999999999998865433222 2233333333 2345554333334444433

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.35  E-value=11  Score=30.29  Aligned_cols=97  Identities=9%  Similarity=0.117  Sum_probs=68.4

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  520 (587)
                      +.+++|..-...+..+..-    .  .-....+..+.+.++++++.+...|+..+..+..++|....    ....+..+.
T Consensus        13 ~~~~D~~~il~icd~I~~~----~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~   86 (133)
T cd03561          13 LEEPDWALNLELCDLINLK----P--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELV   86 (133)
T ss_pred             cCCccHHHHHHHHHHHhCC----C--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHH
Confidence            3456666555444444321    1  11345677788888889999999999999999999987532    234555567


Q ss_pred             hhcCC---CCccHHHHHHHHHHHHHhhhch
Q 007863          521 NASKD---RVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       521 ~~l~d---~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                      +++..   .++.||..++..+..+...++.
T Consensus        87 ~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          87 KIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            76654   4788999999999999888765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=88.35  E-value=3.7  Score=34.18  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=54.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhc
Q 007863          173 QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFS  250 (587)
Q Consensus       173 ~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~  250 (587)
                      .|+.-++|++|.+++..+........-...+++.+...+.| +.++|..+...+.+++...+..  ...+.+.+.+...+
T Consensus        37 vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L  115 (169)
T PF08623_consen   37 VDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTL  115 (169)
T ss_dssp             EEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHH
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHh
Confidence            45567899999999999988765544456678888888999 7889999999999998766542  12344555555444

; PDB: 4A0C_A 1U6G_C.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=88.23  E-value=71  Score=39.00  Aligned_cols=216  Identities=14%  Similarity=0.159  Sum_probs=116.4

Q ss_pred             HHHhcCCCChHHHHHHHHHhHHhhhhhch--------hhHhhhhHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhChhhH
Q 007863          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGI--------DLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFF  433 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~  433 (587)
                      +...+...++++|..+......+......        -...+.++..+..+ +.|.++.+|......+.   ..+.+...
T Consensus       486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~la  562 (2341)
T KOG0891|consen  486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLA  562 (2341)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhc
Confidence            44455566788888887776666544322        01122333333332 35677777776665554   11112222


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc----CCccHHHHHHHHHHHHhhc--ccC
Q 007863          434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN----NPHYLYRMTILQAISLLAP--VMG  507 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~~r~~a~~~l~~l~~--~~~  507 (587)
                      .+......+..+.|....++..+...++.++.... .++...+........+    +....+......-+..+..  ...
T Consensus       563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~  641 (2341)
T KOG0891|consen  563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP-AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVL  641 (2341)
T ss_pred             CchhHHHHHHHhhhhhhhhHHhHHhhccccccccH-HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHH
Confidence            34455667777888888899988888887765322 2222222222222222    2222222222221211111  111


Q ss_pred             hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCC-CCccHHHHHHHHHHHHHH
Q 007863          508 SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSED-PDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       508 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d-~~~~Vr~~a~~al~~l~~  582 (587)
                      ...+...++..++..+.++...+-..+..+++.++...+.  ..+....++.+.+...| ....-|..+-++++.+.+
T Consensus       642 i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  642 ISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             HHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            1223455566677778888888889999999999887662  22333455555553333 344567777888777665

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=88.15  E-value=9.7  Score=29.07  Aligned_cols=61  Identities=10%  Similarity=0.076  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhh
Q 007863          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~~  432 (587)
                      ....-|..++.+++.+.+ ++.+.. ....|.+...+..  +.+..|..++++...+.+.++.+.
T Consensus        27 ~~~~ek~~~l~si~~lI~-~~~~~i-~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~   89 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIK-LGGSHI-SSARPQIMACLQSALEIPELREEALSCWNCFIKTLDEED   89 (107)
T ss_pred             CCHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHH
Confidence            345556666666666666 332222 2333333333321  122555555555555555554433

; GO: 0004674 protein serine/threonine kinase activity

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=87.90  E-value=8.3  Score=30.41  Aligned_cols=134  Identities=13%  Similarity=0.079  Sum_probs=83.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhChh-h---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH-HHHH-hHHHHH
Q 007863          446 KDKVYSIRDAAANNVKRLAEEFGPD-W---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE-ITCS-QLLPVV  519 (587)
Q Consensus       446 ~d~~~~vr~~a~~~l~~l~~~~~~~-~---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~-~~l~~l  519 (587)
                      ...+.+-++.....|++++-  .+. +   ..-.++..+...+..+|.....-++..+.+++..-... .+.+ .=+|.+
T Consensus        27 ~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pli  104 (173)
T KOG4646|consen   27 TTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLI  104 (173)
T ss_pred             HhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceE
Confidence            34455556666555555542  111 1   12345666666777888888888888887777533222 2222 236778


Q ss_pred             HhhcCCCCccHHHHHHHHHHHHHhhhc---hHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          520 INASKDRVPNIKFNVAKVLQSLIPIVD---QSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +..++|+...+-..++-++..+...-.   +......++..+.+.......+.|..|..++++..
T Consensus       105 i~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen  105 IFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             EeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            888999988888888888877754321   12334456666666666667778888888887654

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=87.58  E-value=14  Score=30.09  Aligned_cols=139  Identities=19%  Similarity=0.188  Sum_probs=66.3

Q ss_pred             hHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCC-CcH
Q 007863          255 WRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD-SSQ  333 (587)
Q Consensus       255 ~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d-~~~  333 (587)
                      +.||...+.++..++...-++. ++++++.+.+.++.+ +......+..|..+.+-+..             ..+. ...
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~~-Wp~~l~~l~~~~~~~-~~~~~~~L~iL~~l~eEi~~-------------~~~~~~~~   66 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQQ-WPDFLEDLLQLLQSS-PQHLELVLRILRILPEEITD-------------FRRSSLSQ   66 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHT-------------SHCCHSHH
T ss_pred             hhHHHHHHHHHHHHHHHHChhh-CchHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHh-------------hhchhhhH
Confidence            3566777777777776543322 566777777776663 44444555555555332111             0001 112


Q ss_pred             HHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCC----ChHHHHHHHHHhHHhhhhhchhhHhh-hhHHHHHHHhcC
Q 007863          334 HVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGIDLLSQ-SLLPAIVELAED  408 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~----~~~vr~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~~~~~  408 (587)
                      .-|...-+.+..-         .+.++..+.+.+...    .+.+...++.++..+...+..+.+.. .+++.+..++.+
T Consensus        67 ~r~~~l~~~l~~~---------~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~  137 (148)
T PF08389_consen   67 ERRRELKDALRSN---------SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQS  137 (148)
T ss_dssp             HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCC
Confidence            2222222222222         122333333333322    26667777777777666555444322 356666665544


Q ss_pred             CCcHHHHHHHH
Q 007863          409 RHWRVRLAIIE  419 (587)
Q Consensus       409 ~~~~vr~~~~~  419 (587)
                      ++-  +..+++
T Consensus       138 ~~~--~~~A~~  146 (148)
T PF08389_consen  138 PEL--REAAAE  146 (148)
T ss_dssp             CCC--HHHHHH
T ss_pred             HHH--HHHHHH
Confidence            333  444444

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.91  E-value=33  Score=33.64  Aligned_cols=333  Identities=12%  Similarity=0.080  Sum_probs=148.1

Q ss_pred             HHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCc
Q 007863          202 EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPT  277 (587)
Q Consensus       202 ~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~  277 (587)
                      .++..+++.+.-.+.+.-...+..|.++.-....  ......++..+.++..-.++..|...+..+-++....|-  ...
T Consensus       304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv  383 (791)
T KOG1222|consen  304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMV  383 (791)
T ss_pred             hHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHh
Confidence            3555566555555544444444444444322211  223455788888888888999999999888777643331  222


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHh-HhcCCCcHHHHHHHHHHHHhhhhhhchHH
Q 007863          278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVK-ELSSDSSQHVRSALATVIMGMAPILGKDA  354 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  354 (587)
                      ...++|.+..++++...  ...|+..+..++-.-...  ......++.+. ..+...+.+|-.+.+...-.++-.-....
T Consensus       384 ~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ  461 (791)
T KOG1222|consen  384 NGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ  461 (791)
T ss_pred             hccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce
Confidence            33578999998877542  122333332221100000  01122333332 23333444444444433223321000000


Q ss_pred             ---HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhh
Q 007863          355 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQL  428 (587)
Q Consensus       355 ---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~  428 (587)
                         -.+.+--.+...++..++-    ....+..+.++-|...  +.+ .+..+...+. |.+..   ..++++|.++..-
T Consensus       462 lvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid-yvgdLa~i~~nd~~E~---F~~EClGtlanL~  533 (791)
T KOG1222|consen  462 LVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID-YVGDLAGIAKNDNSES---FGLECLGTLANLK  533 (791)
T ss_pred             EEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH-HHHHHHHHhhcCchHH---HHHHHHHHHhhcc
Confidence               0001111122222222211    1122223333333211  111 1112222222 22222   3455555555432


Q ss_pred             C----hhhHH--HHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHH
Q 007863          429 G----VGFFD--DKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTIL  496 (587)
Q Consensus       429 ~----~~~~~--~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~  496 (587)
                      -    .+.+.  ..++|-+.+.++..  ..+.....+-.+|.++....-..  ....+++.+.++++..  +.+.-...+
T Consensus       534 v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qii  613 (791)
T KOG1222|consen  534 VTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQII  613 (791)
T ss_pred             cCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHH
Confidence            1    11111  13455554444321  12344445555566554322111  1255788888876432  222223333


Q ss_pred             HHHHHhhcc-cChHHH-HH-hHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863          497 QAISLLAPV-MGSEIT-CS-QLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       497 ~~l~~l~~~-~~~~~~-~~-~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                      ..+..+..+ ...+.+ .+ ..-..+..+.+|.+..+|..+=.+|..++..
T Consensus       614 yVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~  664 (791)
T KOG1222|consen  614 YVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH  664 (791)
T ss_pred             HHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            444444332 222211 12 2334678899999999999998888877654

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=86.54  E-value=33  Score=33.37  Aligned_cols=145  Identities=19%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             hhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHHH---
Q 007863           88 LPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEALK---  161 (587)
Q Consensus        88 ~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~~---  161 (587)
                      +++|..+...+  +..||..+.+.|.++...-..+.+...-+..+.++.+.. ........++++..++++..+...   
T Consensus       182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lv  261 (832)
T KOG3678|consen  182 LDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLV  261 (832)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            34555555555  457799999999987765544544444455565555432 344445567788888887754322   


Q ss_pred             -HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          162 -TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       162 -~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                       ...++-+.-.+.-.+|.+-.-++-+|++++-+-+.+    -+...+-..+.-+....++-.|..|+.+...++..
T Consensus       262 aa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat~  337 (832)
T KOG3678|consen  262 AAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLATN  337 (832)
T ss_pred             hhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhhh
Confidence             223344444556666887777778888877654431    12222333444466667777888888777766553

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.44  E-value=15  Score=29.38  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=56.4

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH----HHHhHHHHHHhhcCCCC--ccHHHHHHHHHHHHHhhhch
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI----TCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~  547 (587)
                      ...+..+.+.+.++++.+...|+..+..+..++|...    ....++..+..++.++.  +.||..++..+..+...+..
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            4466677777888899999999999999999888753    24556777777776643  33899999999999887754

Unpublished observations. Domain of unknown function.

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=86.10  E-value=15  Score=28.86  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=38.3

Q ss_pred             hhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863          396 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  467 (587)
Q Consensus       396 ~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                      ..++|.+.+.+. ....+.|.++...++.++...+-+ ...+.++..+.........  ...++.++..+++.-
T Consensus         5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence            456777777666 566677777777777777654421 1112233323222222222  356777777776544

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=86.01  E-value=15  Score=28.83  Aligned_cols=71  Identities=15%  Similarity=0.119  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh-hcCCccH-HHHHHHHHHHHhhccc
Q 007863          433 FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNPHYL-YRMTILQAISLLAPVM  506 (587)
Q Consensus       433 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~~-~r~~a~~~l~~l~~~~  506 (587)
                      +...++|.+...+. ....+.|.++...++.++....-+   +.++..+.+. ..+.... ....++.++..+.+.-
T Consensus         3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~---~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q   76 (121)
T PF12397_consen    3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS---DEVLNALMESILKNWTQETVQRQALICLIVLCQSQ   76 (121)
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc---HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence            35678999999998 778899999999999998865532   3344444332 3332222 2356777777777644

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=85.99  E-value=13  Score=28.32  Aligned_cols=63  Identities=13%  Similarity=0.128  Sum_probs=45.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhh
Q 007863          174 DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC  238 (587)
Q Consensus       174 ~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~  238 (587)
                      ..+..-|..+..+++.+.+..++  ..+.+++...+...+..  ++.|..+++++..+...+++++.
T Consensus        26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l   90 (107)
T PF08064_consen   26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDL   90 (107)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHH
Confidence            46677899999999999985443  23445555555555544  48899999999999998887533

; GO: 0004674 protein serine/threonine kinase activity

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=85.82  E-value=15  Score=28.72  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=48.5

Q ss_pred             HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHH------HhHHHHHHHhc--------CCCCccHHHHHHHHH
Q 007863          512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE------KSIRPCLVELS--------EDPDVDVRFFATQAL  577 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~------~~i~~~l~~l~--------~d~~~~Vr~~a~~al  577 (587)
                      ...++..+.+-+++.++.|+..+++.|..++....+. |.      ..++..+.+..        .+....||..|.+++
T Consensus        36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~  114 (122)
T cd03572          36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-FKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI  114 (122)
T ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-HHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence            4678888888899999999999999999998875433 22      22333344432        233457999999998


Q ss_pred             HHHH
Q 007863          578 QSKD  581 (587)
Q Consensus       578 ~~l~  581 (587)
                      +.+-
T Consensus       115 ~~if  118 (122)
T cd03572         115 KAIF  118 (122)
T ss_pred             HHHh
Confidence            8764

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised

Probab=85.51  E-value=27  Score=31.41  Aligned_cols=50  Identities=12%  Similarity=0.195  Sum_probs=31.8

Q ss_pred             HhHHHHHHhhcCCCC--ccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCC
Q 007863          513 SQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSED  564 (587)
Q Consensus       513 ~~~l~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d  564 (587)
                      ..++..++..+.++.  +.+=..++.+|..+++.=  +.+...++++|..+-.+
T Consensus       113 ~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~R--P~~~~~Il~~ll~~~~~  164 (239)
T PF11935_consen  113 NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQR--PQFMSRILPALLSFNPN  164 (239)
T ss_dssp             HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHhcCcc
Confidence            456667777776654  556667777777776642  34556788888886443

This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=85.51  E-value=17  Score=29.10  Aligned_cols=75  Identities=12%  Similarity=0.072  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhcccCc--hhHHHHHHHHHHHHhccc
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLL  233 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~  233 (587)
                      ..+..+..+.+-+.++++.+...++..|..+++..|..-    ....++..+..++.+..  +.||..+...+...+..+
T Consensus        34 ~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       34 GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            345566667777788999999999999999998877521    12334555555655543  236777777666666655


Q ss_pred             C
Q 007863          234 E  234 (587)
Q Consensus       234 ~  234 (587)
                      .
T Consensus       114 ~  114 (133)
T smart00288      114 K  114 (133)
T ss_pred             c
Confidence            3

Unpublished observations. Domain of unknown function.

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=85.37  E-value=41  Score=33.30  Aligned_cols=334  Identities=9%  Similarity=0.088  Sum_probs=153.8

Q ss_pred             hHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---
Q 007863          199 LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---  275 (587)
Q Consensus       199 ~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---  275 (587)
                      +-.++..+|......-++..|...+.+|.-+-..-.  .....++..+..++.-.+...|..+..-+...+..++..   
T Consensus        17 FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~--i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn   94 (616)
T KOG2229|consen   17 FPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL--IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKN   94 (616)
T ss_pred             hhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc--CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhccc
Confidence            334455555555555567778777777766543211  123456666666666666667887776666666544432   


Q ss_pred             -CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH-HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch-
Q 007863          276 -PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI-QHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-  352 (587)
Q Consensus       276 -~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-  352 (587)
                       .....+..++.+++.+++..   +|..++..+++......|. ..-+..+...+-+.++.+..+++..+-.--..-.. 
T Consensus        95 ~klnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~kr~iW~d~~tV~i~~~acf~~~~ki~vs~l~FfL~~D~~dee~  171 (616)
T KOG2229|consen   95 DKLNKSLQAFMFSMLDQSDST---AAKMALDTMIELYKRNIWNDSKTVNIITTACFSKVPKILVSGLRFFLGADNEDEED  171 (616)
T ss_pred             chHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHHhcccccchhHHHHHHHHhccCcHHHHhhhHHhccCCcccccc
Confidence             12234667777888887765   3334444444433333221 22333333334455566666655544222110000 


Q ss_pred             ------HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh------------------hchhhHhhhhHHHHHHHhcC
Q 007863          353 ------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV------------------IGIDLLSQSLLPAIVELAED  408 (587)
Q Consensus       353 ------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~------------------~~~~~~~~~~~~~l~~~~~~  408 (587)
                            +...+.+-.++.+..+..-..=......+...+-..                  -.++.+.+.+++.+...  .
T Consensus       172 dsd~~~d~dg~~~~~l~~~~vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~  249 (616)
T KOG2229|consen  172 DSDSESDEDGPDADALLHQRVNKKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--K  249 (616)
T ss_pred             ccccccccccccHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--h
Confidence                  000011112222222211111111111222222110                  01223334444444332  3


Q ss_pred             CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhh-hcCC
Q 007863          409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM-INNP  487 (587)
Q Consensus       409 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~-l~~~  487 (587)
                      ....+|...+..|+.+....  ..+.=.+-|.+..+++....+|.+-...+ .+.+..+-+....+.++..+.+. ..|.
T Consensus       250 er~E~klm~~~lisRliG~H--kL~l~~fY~fl~~yl~phqrDvTqIl~~a-aQa~Hd~VP~d~iEpl~k~Ian~FVtD~  326 (616)
T KOG2229|consen  250 ERFEVKLMLMKLISRLIGIH--KLFLFGFYPFLQRYLQPHQRDVTQILAAA-AQASHDLVPPDIIEPLLKTIANNFVTDE  326 (616)
T ss_pred             hhHHHHHHHHHHHHHHhhhh--HHHHhhhHHHHHHHcCcchhhHHHHHHHH-HHhccCCCChHHhhHHHHHHHHHhcccC
Confidence            34556666666665554322  12223466778888888777765433222 22222222211234455555544 4444


Q ss_pred             -ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhh
Q 007863          488 -HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       488 -~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                       .+.+-...+.++..++..++.. +.+.++..+..+-+... .+-..+..++-.+...
T Consensus       327 ~spEv~~vgiN~iREic~Rvpla-MteeLLqDLa~YK~sk~-K~V~maarSLI~L~Re  382 (616)
T KOG2229|consen  327 NSPEVMAVGINAIREICERVPLA-MTEELLQDLASYKTSKK-KVVMMAARSLIALYRE  382 (616)
T ss_pred             CCcceeehhhhHHHHHHhhcchh-hcHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHH
Confidence             3566667777777776654432 23444444444433322 2333444455444443

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=85.23  E-value=15  Score=28.42  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=23.9

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  432 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~  432 (587)
                      ..++..|..-+.+++|++...++..+..+.+..|..+
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            3455566666666677777777777777776666543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>KOG1932 consensus TATA binding protein associated factor [Transcription]

Probab=84.75  E-value=19  Score=39.20  Aligned_cols=49  Identities=20%  Similarity=0.203  Sum_probs=33.8

Q ss_pred             cHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 007863          489 YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS  540 (587)
Q Consensus       489 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (587)
                      ..+|.++..++...+...+......++++.+   -.|++|.+|...+..+..
T Consensus       882 vd~r~~a~~~~v~~~~~~~~~~~l~~~leil---~~~~dp~~R~~i~~ml~~  930 (1180)
T KOG1932|consen  882 VDVRICAEELNVDLGGVDGSPDDLAYILEIL---ENDPDPVIRHKILDMLSQ  930 (1180)
T ss_pred             hhhHHHhhhhhhhhcccCCChHHHHHHhhhc---ccCcchHHHHHHHHHhhc
Confidence            4578888888887776555443344444433   357888899999998887

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=82.88  E-value=66  Score=33.76  Aligned_cols=70  Identities=14%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI  310 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (587)
                      ....+..+..+..|+-..|+..++..+..+...-+.  ....++..++.-+.|++..+-..|...|..+...
T Consensus       302 y~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~  371 (988)
T KOG2038|consen  302 YFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAK  371 (988)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhh
Confidence            345667777788899899999998888877654322  2345888888889999988888888888777654

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=82.44  E-value=19  Score=27.93  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=23.7

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      ..++..+.+.+.+++|.+..-|+..+..+.+++|..
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~   71 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER   71 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH
Confidence            345555666666667777777777777777766654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []

Probab=82.21  E-value=6.6  Score=31.73  Aligned_cols=48  Identities=19%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCC
Q 007863          279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS  331 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~  331 (587)
                      +.+-..+..++.+++.+|++.|++++-..-.    + .....-..+..+++|.
T Consensus        16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~----~-~l~pY~d~L~~Lldd~   63 (141)
T PF07539_consen   16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD----P-YLTPYKDNLENLLDDK   63 (141)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----H-HHHhHHHHHHHHcCcc
Confidence            3566777788888888888888888877633    1 1122234455556554

It is believed to be involved in processing of non-coding RNA [].

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=81.55  E-value=23  Score=27.67  Aligned_cols=38  Identities=11%  Similarity=0.030  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHh
Q 007863          158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE  195 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~  195 (587)
                      ......+...+..-+++.++.|+..++..|..++...+
T Consensus        33 ~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~   70 (122)
T cd03572          33 VGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN   70 (122)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence            44566788888888899999999999999998887654

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length

Probab=81.47  E-value=18  Score=31.29  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=16.8

Q ss_pred             HHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863          437 LGALCMQWLKDKVYSIRDAAANNVKRLA  464 (587)
Q Consensus       437 l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      ++..+++..-+.-..||..|..++..+.
T Consensus         8 ~~~~llrqa~EKiDrvR~~A~~~l~~ll   35 (193)
T PF12612_consen    8 IIGGLLRQAAEKIDRVREVAGKCLQRLL   35 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444555667777777777666

There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=81.21  E-value=18  Score=26.23  Aligned_cols=68  Identities=13%  Similarity=0.120  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 007863          160 LKTELRTIYRQL-CQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCG  227 (587)
Q Consensus       160 ~~~~l~~~l~~l-~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~  227 (587)
                      ..+.++..+... ...++..||....+++..+....+.  ..-++.++..+.....+++..+-..|.+++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            445555555555 5667889999999999998887654  2346677888887787777766666666554

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=81.19  E-value=3.2  Score=22.79  Aligned_cols=12  Identities=25%  Similarity=0.158  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHh
Q 007863          491 YRMTILQAISLL  502 (587)
Q Consensus       491 ~r~~a~~~l~~l  502 (587)
                      +|..++.+|+.+
T Consensus         3 vR~~aa~aLg~~   14 (30)
T smart00567        3 VRHEAAFALGQL   14 (30)
T ss_pred             HHHHHHHHHHHc
Confidence            444455555444

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=80.97  E-value=94  Score=34.23  Aligned_cols=150  Identities=14%  Similarity=0.193  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhcccCh-------hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhC--CCCcccchHHHHHHhc
Q 007863          220 LLAVEGCGALGKLLEP-------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLL  289 (587)
Q Consensus       220 ~~a~~~l~~l~~~~~~-------~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l  289 (587)
                      ..+..+|..+.+..++       +...-..++.+...+. .+++++...+.+.+..+..+-.  ........+..+..++
T Consensus      1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lL 1822 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLL 1822 (2235)
T ss_pred             HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHH
Confidence            3455566665554442       2222223445544443 5677888888887765433211  0111223556666666


Q ss_pred             CCChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHh-HhcCCCcHHHHHHHHHHHHhhhhh--hchHH--HHHhHH-H
Q 007863          290 RDNEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVK-ELSSDSSQHVRSALATVIMGMAPI--LGKDA--TIEQLL-P  361 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~--~~~~~--~~~~l~-~  361 (587)
                      .+ .+.-|..++..|..+...  ++.+...+..+.++. -++...+..+|.++++.++.+...  .|+..  ..-.++ .
T Consensus      1823 HS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~ 1901 (2235)
T KOG1789|consen 1823 HS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPE 1901 (2235)
T ss_pred             hc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchH
Confidence            64 478899999998888763  122222222222333 345667899999999999887532  23321  112233 3


Q ss_pred             HHHHhcCCC
Q 007863          362 IFLSLLKDE  370 (587)
Q Consensus       362 ~l~~~l~d~  370 (587)
                      .+...++|.
T Consensus      1902 ~f~d~~RD~ 1910 (2235)
T KOG1789|consen 1902 IFADSLRDS 1910 (2235)
T ss_pred             HHHHHHhcC
Confidence            455666664

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.75  E-value=61  Score=31.91  Aligned_cols=345  Identities=15%  Similarity=0.157  Sum_probs=165.4

Q ss_pred             HHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhcCCCh
Q 007863          218 VRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNE  293 (587)
Q Consensus       218 vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~  293 (587)
                      .-..|+..|..+++...-  ......++..+.+.+.-.+...-..+...|-++.-....  ......++.-+.+++.-..
T Consensus       279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h  358 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQH  358 (791)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCC
Confidence            344566666666665543  234556778888887777766666666666655432221  1123357788888888888


Q ss_pred             HHHHHHHHHhHHHHHHhhC--HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh--hhchHHHHHhHHHHHHH-hcC
Q 007863          294 AEVRIAAAGKVTKICRILN--PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP--ILGKDATIEQLLPIFLS-LLK  368 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~--~~~~~~~~~~l~~~l~~-~l~  368 (587)
                      ++.|++.+..+-.++-.-|  +.-+...++|.+..++.+...  ..-|...+..+.-  .+..-......++.+.+ .+.
T Consensus       359 ~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~  436 (791)
T KOG1222|consen  359 PDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLS  436 (791)
T ss_pred             HHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888877644222  333445678888888865432  1112222222210  00000111223333332 223


Q ss_pred             CCChHHHHHHHHHhHHhh----------hhhchhhHh-------hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 007863          369 DEFPDVRLNIISKLDQVN----------QVIGIDLLS-------QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  431 (587)
Q Consensus       369 d~~~~vr~~a~~~l~~i~----------~~~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~  431 (587)
                      ....+|-...+..--.++          +.-|-+.+.       +.++-.+.+.+...+...+...+..++.++...   
T Consensus       437 ~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~---  513 (791)
T KOG1222|consen  437 GTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIA---  513 (791)
T ss_pred             cCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHh---
Confidence            333333333221111111          100100000       111111111122222333344444444433322   


Q ss_pred             hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC--hhh--h--hhchHHHHHhhhcCC--ccHHHHHHHHHHHHhh
Q 007863          432 FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG--PDW--A--MQHIVPQVLEMINNP--HYLYRMTILQAISLLA  503 (587)
Q Consensus       432 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~--~~~--~--~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~  503 (587)
                                   -.|.+.+   -.++|+|.++..--  -+|  +  ...++|.+...+.-.  ........+-++|.++
T Consensus       514 -------------~nd~~E~---F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a  577 (791)
T KOG1222|consen  514 -------------KNDNSES---FGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA  577 (791)
T ss_pred             -------------hcCchHH---HHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence                         1233322   45566666654211  111  1  256788887765432  1223333444455554


Q ss_pred             cccChHHH--HHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhh-hchH-HHHH-hHHHHHHHhcCCCCccHHHHHHHH
Q 007863          504 PVMGSEIT--CSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPI-VDQS-VVEK-SIRPCLVELSEDPDVDVRFFATQA  576 (587)
Q Consensus       504 ~~~~~~~~--~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~-~~~~-~~~~-~i~~~l~~l~~d~~~~Vr~~a~~a  576 (587)
                      ........  ...+++.++.+++..  +.+.-...+..+.++..+ .... -+.+ ..-.-+..+..|.+.+||...-.|
T Consensus       578 ~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~  657 (791)
T KOG1222|consen  578 RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNA  657 (791)
T ss_pred             hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHH
Confidence            43322222  234777777766542  333333444444444433 1111 1111 233456678999999999999999


Q ss_pred             HHHHHHH
Q 007863          577 LQSKDQV  583 (587)
Q Consensus       577 l~~l~~~  583 (587)
                      |.-+++.
T Consensus       658 LdIiae~  664 (791)
T KOG1222|consen  658 LDIIAEH  664 (791)
T ss_pred             HHHHHHh
Confidence            9887764

>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]

Probab=80.38  E-value=81  Score=33.15  Aligned_cols=123  Identities=13%  Similarity=0.098  Sum_probs=70.5

Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  397 (587)
                      ..++..+..+..|+=..|+..++..+..+...-+.  ....++-.+..-+.|++..+-..|...|..+......-  .-.
T Consensus       303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnM--K~V  378 (988)
T KOG2038|consen  303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNM--KIV  378 (988)
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcc--eee
Confidence            44667777788888889998888887776544332  33467777888888988888777777777665443221  123


Q ss_pred             hHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHH
Q 007863          398 LLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  444 (587)
Q Consensus       398 ~~~~l~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  444 (587)
                      ++..+.+++--++  .+...-++-.+..+.-......+...++.+++.+
T Consensus       379 vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~l  427 (988)
T KOG2038|consen  379 VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSL  427 (988)
T ss_pred             hHHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHH
Confidence            4555555543333  2223334444444332222222334444444433

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=80.21  E-value=62  Score=31.66  Aligned_cols=144  Identities=13%  Similarity=0.124  Sum_probs=77.9

Q ss_pred             HHHHHhcCCCC--hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChh---hHH
Q 007863          361 PIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG---FFD  434 (587)
Q Consensus       361 ~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~---~~~  434 (587)
                      ..++.++..++  ..||..+...|.++...-..+.+...-+..|..+.+. +..+.....+..++.+.++....   .+.
T Consensus       183 D~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lva  262 (832)
T KOG3678|consen  183 DLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVA  262 (832)
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence            34555555543  4568888888888776544443323334444444443 33445555555565555432211   111


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~  504 (587)
                      ...+..++-+.+-.++.+-..++.+|+++.-.-|...    +.+.+-..++-+....+...|..|+-+...++.
T Consensus       263 a~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat  336 (832)
T KOG3678|consen  263 AGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT  336 (832)
T ss_pred             hcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence            1122333344455667777778888888776544331    223333344444455567788888877776664

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=80.20  E-value=6.1  Score=38.93  Aligned_cols=108  Identities=9%  Similarity=0.085  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH---HhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH-
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAE---EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI-  510 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~---~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~-  510 (587)
                      ..+.+.+++.+.+++..|...+...+...+-   .+|..+....++..+.+++...+...|....+.+.++.-.+..+. 
T Consensus       430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence            3577888889988777666666555555543   334455568899999999888888899999999998887666542 


Q ss_pred             --H-HHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          511 --T-CSQLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       511 --~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                        + .+.-+..++.+.+|+...|....++.+.++.
T Consensus       510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft  544 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT  544 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc
Confidence              2 2333667888999999999999999888774

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=80.14  E-value=2.1  Score=25.49  Aligned_cols=29  Identities=34%  Similarity=0.252  Sum_probs=18.8

Q ss_pred             hHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          553 SIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       553 ~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ..+|.|.+++...+++++..|..++..++
T Consensus        12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       12 GGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35666666666666777777777776654

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	587
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		0.0
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		4e-12
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		7e-04
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		0.0
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		7e-12
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		7e-04
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		0.0
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		4e-12
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		7e-04
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		0.0
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		8e-12
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		7e-04
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		0.0
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		3e-12
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		8e-04
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		0.0
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		4e-12
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		8e-04
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		0.0
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		3e-11
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		5e-04
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		2e-63
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		4e-04
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		4e-04
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		4e-04
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		4e-04
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		4e-04
1ukl_A	876	Crystal Structure Of Importin-Beta And Srebp-2 Comp		7e-04

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 37/406 (9%)
Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238
           +R ++   L   A  +     +SE++    + T  D+D V L   E  G    L+   + 
Sbjct: 27  LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 85
Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 298
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 86  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 145
Query: 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358
           +A G +  +C           +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 146 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 204
Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 205 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 264
Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478
           +    L   +G       L       +KD    +R AA++ VK   E    D        
Sbjct: 265 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-------- 316
Query: 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538
                                          +  SQ+LP +     D   ++K  +A V+
Sbjct: 317 ---------------------------CRENVIMSQILPCIKELVSDANQHVKSALASVI 349
Query: 539 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584
             L PI+ +    + + P  +   +D   +VR      L   ++V+
Sbjct: 350 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 395

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 2/290 (0%)
Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 20  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 78
Query: 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 79  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 138
Query: 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468
             +  R +      +   ++       +L         D    +R AAA+ +   A+   
Sbjct: 139 DWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 197
Query: 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 528
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 198 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 257
Query: 529 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++
Sbjct: 258 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 307

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 7   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 66
Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 67  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 126
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 127 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 186
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 187 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 246
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 247 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 306
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 307 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 366
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 367 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 426
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 427 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 486
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 487 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 546
Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 547 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 583

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 152/406 (37%), Gaps = 37/406 (9%)
Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238
           +R ++   L   A  +     +SE++    + T  D+D V L   E  G    L+   + 
Sbjct: 27  LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 85
Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 298
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 86  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 145
Query: 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358
           +A G +  +C           +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 146 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 204
Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 205 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 264
Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478
           +    L   +G       L       +KD    +R AA++ VK   E    D        
Sbjct: 265 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-------- 316
Query: 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538
                                          +  +Q+LP +     D   ++K  +A V+
Sbjct: 317 ---------------------------CRENVIMTQILPCIKELVSDANQHVKSALASVI 349
Query: 539 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584
             L PI+ +    + + P  +   +D   +VR      L   ++V+
Sbjct: 350 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 395

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 2/290 (0%)
Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 20  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 78
Query: 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 79  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 138
Query: 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468
             +  R +      +   ++       +L         D    +R AAA+ +   A+   
Sbjct: 139 DWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 197
Query: 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 528
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 198 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 257
Query: 529 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++
Sbjct: 258 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 307

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 37/406 (9%)
Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238
           +R ++   L   A  +     +SE++    + T  D+D V L   E  G    L+   + 
Sbjct: 26  LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 298
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 85  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 144
Query: 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358
           +A G +  +C           +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 145 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263
Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478
           +    L   +G       L       +KD    +R AA++ VK   E    D        
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-------- 315
Query: 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538
                                          +  SQ+LP +     D   ++K  +A V+
Sbjct: 316 ---------------------------CRENVIMSQILPCIKELVSDANQHVKSALASVI 348
Query: 539 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584
             L PI+ +    + + P  +   +D   +VR      L   ++V+
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 2/290 (0%)
Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 77
Query: 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 78  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137
Query: 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468
             +  R +      +   ++       +L         D    +R AAA+ +   A+   
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196
Query: 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 528
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 529 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/577 (58%), Positives = 441/577 (76%), Gaps = 4/577 (0%)
Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245
Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305
Query: 305 TKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365
Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425
Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485
Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 582

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 84/406 (20%), Positives = 152/406 (37%), Gaps = 37/406 (9%)
Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238
           +R ++   L   A  +     +SE++    + T  D+D V L   E  G    L+   + 
Sbjct: 26  LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 84
Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 298
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 85  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 144
Query: 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358
           +A G +  +C           +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 145 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263
Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478
           +    L   +G       L       +KD    +R AA++ VK   E    D        
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-------- 315
Query: 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538
                                          +  +Q+LP +     D   ++K  +A V+
Sbjct: 316 ---------------------------CRENVIMTQILPCIKELVSDANQHVKSALASVI 348
Query: 539 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584
             L PI+ +    + + P  +   +D   +VR      L   ++V+
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 2/290 (0%)
Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 77
Query: 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 78  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137
Query: 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468
             +  R +      +   ++       +L         D    +R AAA+ +   A+   
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196
Query: 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 528
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256
Query: 529 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 306

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  689 bits (1779), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/574 (59%), Positives = 439/574 (76%), Gaps = 4/574 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 3   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 62
Query: 68  AEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFI 127
           AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  HF+
Sbjct: 63  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 122
Query: 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187
           PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA+ L
Sbjct: 123 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 182
Query: 188 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 183 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 242
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307
             ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + 
Sbjct: 243 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 302
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+F
Sbjct: 303 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 362
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 363 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 422
Query: 424 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M
Sbjct: 423 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 482
Query: 484 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + P
Sbjct: 483 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 542
Query: 544 IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           I+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 543 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 37/406 (9%)
Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238
           +R ++   L   A  +     +SE++    + T  D+D V L   E  G    L+   + 
Sbjct: 20  LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 78
Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 298
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 79  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 138
Query: 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358
           +A G +  +C           +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 139 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 197
Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 198 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 257
Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478
           +    L   +G       L       +KD    +R AA++ VK   E    D        
Sbjct: 258 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-------- 309
Query: 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538
                                          +  SQ+LP +     D   ++K  +A V+
Sbjct: 310 ---------------------------CRENVIMSQILPCIKELVSDANQHVKSALASVI 342
Query: 539 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584
             L PI+ +    + + P  +   +D   +VR      L   ++V+
Sbjct: 343 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 388

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 2/290 (0%)
Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 13  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 71
Query: 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 72  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 131
Query: 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468
             +  R +      +   ++       +L         D    +R AAA+ +   A+   
Sbjct: 132 DWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 190
Query: 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 528
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 191 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 250
Query: 529 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++
Sbjct: 251 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 300

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/574 (59%), Positives = 439/574 (76%), Gaps = 4/574 (0%)
Query: 8   LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAM 67
           LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLLA+
Sbjct: 1   LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 60
Query: 68  AEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFI 127
           AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  HF+
Sbjct: 61  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 120
Query: 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187
           PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA+ L
Sbjct: 121 PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 180
Query: 188 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247
           G+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P + 
Sbjct: 181 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 240
Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307
             ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV + 
Sbjct: 241 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 300
Query: 308 CRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIF 363
           C  L+ +    + +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LLP+F
Sbjct: 301 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 360
Query: 364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL 423
           L+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PL
Sbjct: 361 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 420
Query: 424 LASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483
           LA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL M
Sbjct: 421 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 480
Query: 484 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
             +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ + P
Sbjct: 481 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 540
Query: 544 IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           I+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 541 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 574

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 152/406 (37%), Gaps = 37/406 (9%)
Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238
           +R ++   L   A  +     +SE++    + T  D+D V L   E  G    L+   + 
Sbjct: 18  LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 76
Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 298
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 77  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 136
Query: 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358
           +A G +  +C           +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 137 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 195
Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
           ++P+F +L  DE   VRL  +     + Q++  + L   ++P + + AED+ WRVR  + 
Sbjct: 196 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 255
Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478
           +    L   +G       L       +KD    +R AA++ VK   E    D        
Sbjct: 256 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD-------- 307
Query: 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538
                                          +  SQ+LP +     D   ++K  +A V+
Sbjct: 308 ---------------------------CRENVIMSQILPCIKELVSDANQHVKSALASVI 340
Query: 539 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584
             L PI+ +    + + P  +   +D   +VR      L   ++V+
Sbjct: 341 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 386

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 2/290 (0%)
Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 11  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 69
Query: 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 70  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 129
Query: 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468
             +  R +      +   ++       +L         D    +R AAA+ +   A+   
Sbjct: 130 DWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 188
Query: 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 528
            D     I+P    + ++     R+  ++A   +A ++  E   + ++P +  A++D+  
Sbjct: 189 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 248
Query: 529 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++
Sbjct: 249 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVK 298

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/576 (57%), Positives = 428/576 (74%), Gaps = 4/576 (0%)
Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
           + LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVLL
Sbjct: 1   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL 60
Query: 66  AMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEH 125
           A+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  H
Sbjct: 61  ALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 120
Query: 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAAT 185
           F+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD P VRR+AA+
Sbjct: 121 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAAS 180
Query: 186 NLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPV 245
            LG+FA  +E  ++KSEI+  F  L  D+QDSVRLLAVE C  + +LL  +D  A + P 
Sbjct: 181 KLGEFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPT 240
Query: 246 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 305
           +   ++DKSWRVRY VA++  EL +AVGPE T++D+VPA+  L +D EAEVR AA+ KV 
Sbjct: 241 LRQAAEDKSWRVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300
Query: 306 KICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLP 361
           + C  L+ +    +    ILPC+KEL SD++QHV+SALA+VI G++PILGKD TIE LLP
Sbjct: 301 EFCENLSADCRENVIXSQILPCIKELVSDANQHVKSALASVIXGLSPILGKDNTIEHLLP 360
Query: 362 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI 421
           +FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY 
Sbjct: 361 LFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYX 420
Query: 422 PLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL 481
           PLLA QLGV FFD+KL +LC  WL D VY+IR+AA +N+K+L E+FG +WA   I+P+VL
Sbjct: 421 PLLAGQLGVEFFDEKLNSLCXAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVL 480
Query: 482 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSL 541
               +P+YL+R T L  I++L+ V G +IT    LP V+  + D V N++FNVAK LQ +
Sbjct: 481 AXSGDPNYLHRXTTLFCINVLSEVCGQDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKI 540
Query: 542 IPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
            PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 541 GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 576

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/406 (20%), Positives = 149/406 (36%), Gaps = 37/406 (9%)
Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDC 238
           +R ++   L   A  +     +SE++    + T  D+D V L   E  G    L+   + 
Sbjct: 20  LRLNSIKKLSTIALALGVERTRSELLPFLTD-TIYDEDEVLLALAEQLGTFTTLVGGPEY 78
Query: 239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRI 298
           V  +LP + + +  +   VR      L  +     P    +  VP   RL   +    R 
Sbjct: 79  VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRT 138
Query: 299 AAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQ 358
           +A G +  +C           +    + L SD +  VR A A+ +   A +L  D    +
Sbjct: 139 SACG-LFSVCYPRVSSAVKAELRQYFRNLCSDDTPXVRRAAASKLGEFAKVLELDNVKSE 197
Query: 359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
           ++P F +L  DE   VRL  +     + Q++  + L   + P + + AED+ WRVR  + 
Sbjct: 198 IIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVA 257
Query: 419 EYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP 478
           +    L   +G       L        KD    +R AA++ VK   E    D        
Sbjct: 258 DKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENLSAD-------- 309
Query: 479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL 538
                                          +  SQ+LP +     D   ++K  +A V+
Sbjct: 310 ---------------------------CRENVIXSQILPCIKELVSDANQHVKSALASVI 342
Query: 539 QSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM 584
             L PI+ +    + + P  +   +D   +VR      L   ++V+
Sbjct: 343 XGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 388

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/290 (19%), Positives = 115/290 (39%), Gaps = 2/290 (0%)
Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAP 348
           LR+ + ++R+ +  K++ I   L  E     +LP + +   D  + V  ALA  +     
Sbjct: 13  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 71
Query: 349 ILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 408
           ++G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 72  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 131
Query: 409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFG 468
             +  R +      +   ++       +L         D    +R AAA+ +   A+   
Sbjct: 132 DWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDDTPXVRRAAASKLGEFAKVLE 190
Query: 469 PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP 528
            D     I+P    + ++     R+  ++A   +A ++  E   + + P +  A++D+  
Sbjct: 191 LDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAAEDKSW 250
Query: 529 NIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQ 578
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++
Sbjct: 251 RVRYXVADKFTELQKAVGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVK 300

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 160/218 (73%)
Query: 360 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 419
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 480 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQ 539
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 540 SLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
            + PI+D S ++  ++P L +L++D DVDV++FA +AL
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 25/185 (13%)
Query: 158 EALKTELRTI-------YRQLCQDDMPM-VRRSAATNLGKFAATVEAAHLKSEIMSIFEE 209
           EA+K+++  +       +  +C ++M + +  S A   G+        + K  +  +   
Sbjct: 266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325
Query: 210 LTQ---DDQDSVRLLAVEGCGALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYM 260
           LTQ      ++        C A G  L         D V H+LP I    ++  W  RY 
Sbjct: 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYR 383
Query: 261 VANQLYELCEAVGPEPTR-----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315
            A  +   C   GPEP++        +P  + L++D    VR  AA  V +IC +L PE 
Sbjct: 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEA 442
Query: 316 AIQHI 320
           AI  +
Sbjct: 443 AINDV 447

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
               VR  AA  V +IC +L PE AI  +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
               VR  AA  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
           D V H+LP I    ++  W  RY  A  +   C   GPEP++        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
               VR  AA  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 25/185 (13%)
Query: 158 EALKTELRTI-------YRQLCQDDMPM-VRRSAATNLGKFAATVEAAHLKSEIMSIFEE 209
           EA+K+++  +       +  +C ++M + +  S A   G+        + K  +  +   
Sbjct: 266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325
Query: 210 LTQ---DDQDSVRLLAVEGCGALGKLLE------PQDCVAHILPVIVNFSQDKSWRVRYM 260
           LTQ      ++        C A G  L         D V H+LP I    ++  W  RY 
Sbjct: 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW--RYR 383
Query: 261 VANQLYELCEAVGPEPTR-----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL 315
            A  +   C   GPEP++        +P  + L++D    VR  AA  V +IC +L PE 
Sbjct: 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL-PEA 442
Query: 316 AIQHI 320
           AI  +
Sbjct: 443 AINDV 447

>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYVRLLRD 291
           D V H+LP I    ++  WR R         + E  GPEP +        +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 292 NEAEVRIAAAGKVTKICRILNPELAIQHI 320
               VR   A  V +IC +L PE AI  +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	587
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	0.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-67
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-23
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	4e-19
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-12
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	8e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	2e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	4e-04
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	2e-18
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-15
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	9e-07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-17
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	9e-15
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	6e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	7e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	3e-10
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-08
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	4e-16
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-14
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-09
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	3e-07
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	2e-05
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-14
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-11
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	8e-10
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	5e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	6e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	7e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	3e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-09
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	5e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-10
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-07
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	4e-08
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	3e-07
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	8e-05
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	9e-05
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	8e-08
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	1e-07
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	6e-06
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	1e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	2e-05
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	5e-05
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-06
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	2e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-05
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	7e-05
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	2e-04
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	6e-04
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	7e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  568 bits (1466), Expect = 0.0
 Identities = 341/582 (58%), Positives = 441/582 (75%), Gaps = 4/582 (0%)

Query: 2   AMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD 61
           A  D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+D
Sbjct: 3   ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED 62

Query: 62  EVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD 121
           EVLLA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D
Sbjct: 63  EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD 122

Query: 122 VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRR 181
           +  HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR
Sbjct: 123 LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182

Query: 182 SAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH 241
           +AA+ LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A 
Sbjct: 183 AAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL 242

Query: 242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAA 301
           ++P +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302

Query: 302 GKVTKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357
            KV + C  L+ +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362

Query: 358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAI 417
            LLP+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAI
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422

Query: 418 IEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV 477
           IEY+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+
Sbjct: 423 IEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII 482

Query: 478 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKV 537
           P+VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK 
Sbjct: 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKS 542

Query: 538 LQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579
           LQ + PI+D S ++  ++P L +L++D DVDV++FA +AL  
Sbjct: 543 LQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  227 bits (581), Expect = 4e-67
 Identities = 91/503 (18%), Positives = 192/503 (38%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEH 125
             A  L               L      LC+ +   VR  A   L      +   +V   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 FIPLVKRLAAGEWFTARVSSCG-LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
            IP+   LA+ E  + R+ +     ++A     E L+  +    RQ  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL----EPQDCVA 240
               +    V     K++++  F+ L +D +  VR  A        + L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   ++P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              +  +  ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           I +L+   G       +    ++   D V ++R   A +++++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILQAISLLA 503
            ++  +     +    +A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  101 bits (253), Expect = 8e-23
 Identities = 40/264 (15%), Positives = 92/264 (34%), Gaps = 4/264 (1%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAE 69
           +  + + + + +  ++      +  ++  LG++ T + L+P       D+  EV L +  
Sbjct: 326 LPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIIS 385

Query: 70  ELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPL 129
            L      +G  + +  LLP +  L    +  VR   +E +  +  Q+  +   E    L
Sbjct: 386 NLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445

Query: 130 VKRLAAGEWFTARVSSCGLFH--VAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187
                    +  R ++       V       A  T +  +   +  D   + R +    +
Sbjct: 446 CMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV-LAMSGDPNYLHRMTTLFCI 504

Query: 188 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247
              +           ++     +  D   +VR    +    +G +L+     + + P++ 
Sbjct: 505 NVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE 564

Query: 248 NFSQDKSWRVRYMVANQLYELCEA 271
             +QD+   V+Y     L  L  A
Sbjct: 565 KLTQDQDVDVKYFAQEALTVLSLA 588

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 90.9 bits (224), Expect = 4e-19
 Identities = 92/636 (14%), Positives = 188/636 (29%), Gaps = 72/636 (11%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--------KELIPFLSENNDDDD- 61
           +  L   + +D  QLR  S   L T+   L    +         K++   L+      + 
Sbjct: 88  VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED 147

Query: 62  -----EVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ 116
                E L  MA+ L      +    +   +L  L    T     VR + + +L  +   
Sbjct: 148 VSVQLEALDIMADMLSRQGGLLV--NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205

Query: 117 MREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR---QLCQ 173
                 V+    L+  L+  +  +   +           A   +   L  I     + C 
Sbjct: 206 CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCN 265

Query: 174 DDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG 230
            D   +R         F          H+ + I    + LT D   +      +      
Sbjct: 266 VDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA 325

Query: 231 KLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRL 288
              +  D  +           D SW+VR   A  L  +              V PA +  
Sbjct: 326 DGGDDDDQGSDDEYSD---DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISR 382

Query: 289 LRDNEAEVRIAAAGKVTKICRILNP---------------------ELAIQHILPCVKEL 327
            ++ E  V+         + +   P                     +  + +I+  + + 
Sbjct: 383 FKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQ 442

Query: 328 SSDSSQHVRSALATVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNI-----IS 380
             + S   R     ++  +  +L    T  I  L+P  +  L D+     L I     + 
Sbjct: 443 MKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502

Query: 381 KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------FD 434
            +   +         Q+L+P +V    D  +++    +     L   +            
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT 562

Query: 435 DKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNP 487
             +  L    +K     D    +++ A + + ++    G +    + + +   LE + N 
Sbjct: 563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE 622

Query: 488 HY-LYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546
              L  +  L  I+     +       + +P++ +  +     +K      L  LI    
Sbjct: 623 ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682

Query: 547 QSVVE---KSIRPCLVELSEDPDVDVRFFATQALQS 579
            S+      ++   L  L  + D+ V   A   L +
Sbjct: 683 DSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTT 718

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 67.8 bits (164), Expect = 6e-12
 Identities = 55/419 (13%), Positives = 128/419 (30%), Gaps = 27/419 (6%)

Query: 14   LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE----NNDDDDEVLLAMAE 69
            L   L+ +   L+L ++  L  + +   +  T   +   L E     ++ D  V      
Sbjct: 655  LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 714

Query: 70   ELGVFIPYVGGL--EYANVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMREQDVVEH 125
             L            + +  +L  L  L    + +       ++    +            
Sbjct: 715  FLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMD 774

Query: 126  FIPLVKRLAAGEWF-----TARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVR 180
             + ++      +        +  S          + P+     +    + +         
Sbjct: 775  LLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSI 834

Query: 181  RSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA 240
            R  A               + E+ S+  E      + V+  A    G++         + 
Sbjct: 835  RLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV-----GNLP 889

Query: 241  HILPVIVNFSQDKSWRVRYMVANQLYEL---CEAVGPEPTRSDVVPAYVRLLRDNEAEVR 297
              LP ++        + +Y++ + L E+      VG +P   ++    ++     E   R
Sbjct: 890  EYLPFVLQ-EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTR 948

Query: 298  IAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIE 357
               A  + K+  I +PE  +  +   +   SS +   V +A+   I      +  D  ++
Sbjct: 949  NVVAECLGKLTLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPI--DPLLK 1005

Query: 358  QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVR 414
              +  FL  L+D   +VR   +   +         +     ++LP +    + R   +R
Sbjct: 1006 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIR 1064

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 15/240 (6%)

Query: 354 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 410
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 411 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD 470
             V+   ++ +  L S++     +  +  LC   +      +RD ++  +K +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 471 WAMQHIVPQVLEMI---------NNPHYLYRMTILQAISLLAPVMGSEITCS--QLLPVV 519
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 520 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579
           +         ++      L  L+      V    I   L ELS++  +       Q + +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 56.3 bits (134), Expect = 2e-08
 Identities = 70/527 (13%), Positives = 161/527 (30%), Gaps = 38/527 (7%)

Query: 82   EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD----------VVEHFIPLVK 131
             +   L+PP+          +  +A+    ++   +R  D          + + F   +K
Sbjct: 515  PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK 574

Query: 132  RLAAGEWFT-ARVSSCGLFHVAYPSAPEALKTELRTIYRQLC-QDDMPMVRRSAATNLGK 189
            RL A +     +  +         +  + L ++L    +    +    + R +    L  
Sbjct: 575  RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTL 634

Query: 190  FAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE------PQDCVAHIL 243
             A +     L+  +      L    + + R L +    AL  L++          +  +L
Sbjct: 635  IAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 694

Query: 244  PVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRD-------NEA 294
              +     +    V  M  + L  L +            ++   + L+R          A
Sbjct: 695  DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754

Query: 295  EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA 354
             +    A  VT    +   +L      P   + ++ + +    ++A  +  +     K+ 
Sbjct: 755  MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 814

Query: 355  TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 414
                   I           +RL  +  L +V   I +      L   I+E        V+
Sbjct: 815  PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG-QLELKSVILEAFSSPSEEVK 873

Query: 415  LAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 474
             A    +  ++      +    L  +  Q    + Y +  +    +   +      +  +
Sbjct: 874  SAASYALGSISVGNLPEYLPFVLQEITSQP--KRQYLLLHSLKEIISSASVVGLKPYV-E 930

Query: 475  HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 534
            +I   +L+         R  + + +  L  +    +     LP +           + +V
Sbjct: 931  NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-----LPRLKGYLISGSSYARSSV 985

Query: 535  AKVLQSLIPIVDQSVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 579
               ++  I    Q +    K+     ++  EDPD++VR  A     S
Sbjct: 986  VTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1032

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 84.7 bits (209), Expect = 1e-18
 Identities = 34/196 (17%), Positives = 76/196 (38%), Gaps = 14/196 (7%)

Query: 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLKD 447
           +D+LS+ +     +  E++ W +R   +E +  L +   +L  G +   + AL     KD
Sbjct: 10  VDILSK-MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68

Query: 448 KVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV 505
               +   A   +  LA+     ++      VP +LE            ++ A+      
Sbjct: 69  SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK----PNVVTALREAIDA 124

Query: 506 MGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE----KSIRPCLVEL 561
           + +  +       ++ +  ++ P++K   A  +   +     + +     K +   LV+ 
Sbjct: 125 IYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184

Query: 562 SEDPDVDVRFFATQAL 577
             +PD  VR  + +AL
Sbjct: 185 LNEPDPTVRDSSAEAL 200

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 82.4 bits (203), Expect = 8e-18
 Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 13/218 (5%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRSDVVPAYVRLL 289
           LL+P D ++ +     +  ++K W +R      L +L              +V A  +++
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65

Query: 290 -RDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKELSSDSSQHVRSALATVIMGM 346
            +D+   +   A   +  + + L    +      +P + E   +   +V +AL   I  +
Sbjct: 66  TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125

Query: 347 APILGKDATIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAI 402
                   ++E      +  L ++ P V+      I++ L +         L + L  ++
Sbjct: 126 Y----ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 403 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 440
           V+   +    VR +  E +  L   +G       L  +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 27/190 (14%), Positives = 66/190 (34%), Gaps = 11/190 (5%)

Query: 194 VEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE-----PQDCVAHILPVIVN 248
           ++   + S++   F +  ++ + ++R  ++E    L KLL             ++  +  
Sbjct: 7   LDPVDILSKMPKDFYDKLEEKKWTLRKESLE---VLEKLLTDHPKLENGEYGALVSALKK 63

Query: 249 -FSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT 305
             ++D +  +  M    L  L + +        S  VP+ +   ++ +  V  A    + 
Sbjct: 64  VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123

Query: 306 KICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS 365
            I    + E   + I+  +   +          +A  +    P       ++ L    + 
Sbjct: 124 AIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVK 183

Query: 366 LLKDEFPDVR 375
            L +  P VR
Sbjct: 184 TLNEPDPTVR 193

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 25/205 (12%), Positives = 62/205 (30%), Gaps = 17/205 (8%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE--NNDDDDEVLLAMAE 69
             D+L+     LR  S+  L  +     +        L+  L +    D +  ++    +
Sbjct: 20  FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGK 79

Query: 70  ELGVFIPYVGGL--EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFI 127
            L +    +      YA+  +P L      ++  V     E++  I +    +   E  +
Sbjct: 80  CLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIV 139

Query: 128 PLVK------RLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRR 181
             +       +     +    ++      +          + +     +   +  P VR 
Sbjct: 140 ESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-----KTLNEPDPTVRD 194

Query: 182 SAATNLGKFAATVEAAHLKSEIMSI 206
           S+A  LG     +    +   +  +
Sbjct: 195 SSAEALGTLIKLMGDKAVTPLLADV 219

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 84.2 bits (208), Expect = 2e-18
 Identities = 47/261 (18%), Positives = 80/261 (30%), Gaps = 85/261 (32%)

Query: 208 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
            +   D     R +AV                   +  +    +D    VR  VA +L  
Sbjct: 56  VQYLADPFWERRAIAVRYSP---------------VEALTPLIRDSDEVVRRAVAYRL-- 98

Query: 268 LCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL 327
                  E            L+ D + EVRI  A ++                L  ++++
Sbjct: 99  -----PRE--------QLSALMFDEDREVRITVADRLP---------------LEQLEQM 130

Query: 328 SSDSSQHVRSALATVI-MGMAPILGKD-------ATIEQL-LPIFLSLLKDEFPDVRLNI 378
           ++D    VR+ +   I  G      +D          ++L       + +D  P+VR  +
Sbjct: 131 AADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 190

Query: 379 ISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 438
            S+L                   ++EL  D  W VRLA +E+  L A +           
Sbjct: 191 ASRLRG---------------DDLLELLHDPDWTVRLAAVEHASLEALRE---------- 225

Query: 439 ALCMQWLKDKVYSIRDAAANN 459
                 L +    +R A A  
Sbjct: 226 ------LDEPDPEVRLAIAGR 240

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 75.7 bits (186), Expect = 1e-15
 Identities = 51/301 (16%), Positives = 81/301 (26%), Gaps = 93/301 (30%)

Query: 92  ETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHV 151
              CT  + CV  ++   + R                L  +  A  ++  R         
Sbjct: 26  TGRCTPGDACVAVESGRQIDRFFRNNPH---------LAVQYLADPFWERRAI------A 70

Query: 152 AYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT 211
              S  EAL          L +D   +VRR+ A  L +                    L 
Sbjct: 71  VRYSPVEAL--------TPLIRDSDEVVRRAVAYRLPR---------------EQLSALM 107

Query: 212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA-----NQLY 266
            D+   VR+   +                  L  +   + D+ + VR  V       +L+
Sbjct: 108 FDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLF 152

Query: 267 ELC----EAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP 322
                    V     +     +   + +D E EVR   A ++                  
Sbjct: 153 RFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------D 197

Query: 323 CVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 382
            + EL  D    VR A                  E      L  L +  P+VRL I  +L
Sbjct: 198 DLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIAGRL 241

Query: 383 D 383
            
Sbjct: 242 G 242

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 49.5 bits (118), Expect = 9e-07
 Identities = 34/275 (12%), Positives = 69/275 (25%), Gaps = 93/275 (33%)

Query: 312 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF 371
           NP LA         +  +D     R+              + + +E L P    L++D  
Sbjct: 51  NPHLA--------VQYLADPFWERRAIAV-----------RYSPVEALTP----LIRDSD 87

Query: 372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG 431
             VR  +  +L +                 +  L  D    VR+ + + +P         
Sbjct: 88  EVVRRAVAYRLPR---------------EQLSALMFDEDREVRITVADRLP--------- 123

Query: 432 FFDDKLGALCMQWLKDKVYSIRDAAANN-----VKRLAEEFGPD---WAMQHIVPQVLE- 482
                      Q   D+ Y +R           + R   +          + +  + L  
Sbjct: 124 ------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGL 177

Query: 483 MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI 542
           M  +P    R  +   +                   ++    D    ++    +      
Sbjct: 178 MTQDPEPEVRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVE------ 216

Query: 543 PIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
                           +   ++PD +VR      L
Sbjct: 217 ----------HASLEALRELDEPDPEVRLAIAGRL 241

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 79.8 bits (197), Expect = 9e-17
 Identities = 51/320 (15%), Positives = 96/320 (30%), Gaps = 52/320 (16%)

Query: 102 VRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK 161
            + KA +          ++   +    L + L          S+  L       A     
Sbjct: 6   QKRKASKEYGLYNQ--CKKLNDD---ELFRLLDDHNSLKRISSARVLQLRGGQDAVRLA- 59

Query: 162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLL 221
                   + C D   + R   A  LG+           +    +      D    VR  
Sbjct: 60  -------IEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNVFNILNNMALNDKSACVRAT 110

Query: 222 AVEGCGALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD 280
           A+E   +  +  +        I+      + DKS  VR   A  +  + +          
Sbjct: 111 AIE---STAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDK--------A 159

Query: 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALA 340
            +P  + LL+D   +VR  AA  +    +  N +     I  C  E+  D ++ VR    
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININ-KYDNSD-----IRDCFVEMLQDKNEEVRIEAI 213

Query: 341 TVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP 400
             +             +++L +    LK     V  +II    +        L  ++LLP
Sbjct: 214 IGLSYRKD--------KRVLSVLCDELKKN--TVYDDIIEAAGE--------LGDKTLLP 255

Query: 401 AIVELAED-RHWRVRLAIIE 419
            +  +        +  + I+
Sbjct: 256 VLDTMLYKFDDNEIITSAID 275

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 74.1 bits (182), Expect = 9e-15
 Identities = 52/293 (17%), Positives = 98/293 (33%), Gaps = 48/293 (16%)

Query: 177 PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQ---DDQDSVRLLAVEGCGALGKLL 233
              +R A+   G +    +            +EL +   D     R+ +      L    
Sbjct: 4   TYQKRKASKEYGLYNQCKKLN---------DDELFRLLDDHNSLKRISSAR---VLQLRG 51

Query: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE 293
                    + + + F  DK++  R + A  L ++   +  +   +         L D  
Sbjct: 52  GQD-----AVRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNILNNMALNDKS 104

Query: 294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD 353
           A VR  A     + C+     +    I+   +  + D S +VR A A  I      +   
Sbjct: 105 ACVRATAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV----INDK 158

Query: 354 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 413
           ATI  L+     LLKD   DVR      ++           +  +    VE+ +D++  V
Sbjct: 159 ATIPLLIN----LLKDPNGDVRNWAAFAINI------NKYDNSDIRDCFVEMLQDKNEEV 208

Query: 414 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE 466
           R+  I  +    S       D ++ ++    LK    ++ D        L ++
Sbjct: 209 RIEAIIGL----SYRK----DKRVLSVLCDELKKN--TVYDDIIEAAGELGDK 251

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 37/286 (12%), Positives = 82/286 (28%), Gaps = 42/286 (14%)

Query: 218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
            +  A +     G   + +         +     D +   R   A  L       G +  
Sbjct: 6   QKRKASK---EYGLYNQCKKLN---DDELFRLLDDHNSLKRISSARVLQLR----GGQ-- 53

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 337
             D V   +    D     R   A  + +I      E  + +IL       +D S  VR+
Sbjct: 54  --DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL--NNMALNDKSACVRA 109

Query: 338 ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397
                               +++        D+  +VR      +          +  ++
Sbjct: 110 TAIESTAQRCKK--NPIYSPKIVEQSQITAFDKSTNVRRATAFAISV--------INDKA 159

Query: 398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 457
            +P ++ L +D +  VR      I +          +  +    ++ L+DK   +R  A 
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAI 213

Query: 458 NNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA 503
             +    ++         ++  + + +          I++A   L 
Sbjct: 214 IGLSYRKDK--------RVLSVLCDELKKNT--VYDDIIEAAGELG 249

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 62.1 bits (151), Expect = 7e-11
 Identities = 52/306 (16%), Positives = 103/306 (33%), Gaps = 47/306 (15%)

Query: 275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH 334
              +        RLL D+ +  RI++A    ++ ++   + A++  +        D +  
Sbjct: 18  NQCKKLNDDELFRLLDDHNSLKRISSA----RVLQLRGGQDAVRLAIEFCS----DKNYI 69

Query: 335 VRSALATVIMGMAPILGKDATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDL 393
            R         +  I       + +  I  +  L D+   VR   I    Q  +   I  
Sbjct: 70  RRDI---GAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY- 125

Query: 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR 453
            S  ++      A D+   VR A    I    S +     D     L +  LKD    +R
Sbjct: 126 -SPKIVEQSQITAFDKSTNVRRATAFAI----SVIN----DKATIPLLINLLKDPNGDVR 176

Query: 454 DAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS 513
           + AA     + +    D     I    +EM+ + +   R+  +  +S             
Sbjct: 177 NWAAF-AININKYDNSD-----IRDCFVEMLQDKNEEVRIEAIIGLS--------YRKDK 222

Query: 514 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFF 572
           ++L V+ +  K     +  ++ +    L         +K++ P L   L +  D ++   
Sbjct: 223 RVLSVLCDELKK--NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITS 272

Query: 573 ATQALQ 578
           A   L+
Sbjct: 273 AIDKLK 278

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 42/247 (17%), Positives = 79/247 (31%), Gaps = 32/247 (12%)

Query: 331 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 390
           S+ + +   +           K    ++L      LL D     R++    L        
Sbjct: 2   SNTYQKRKASKEYGLYNQ--CKKLNDDELFR----LLDDHNSLKRISSARVLQLRG---- 51

Query: 391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVY 450
                Q  +   +E   D+++  R        L   ++     D+    L    L DK  
Sbjct: 52  ----GQDAVRLAIEFCSDKNYIRRDIGAFI--LGQIKICKKCEDNVFNILNNMALNDKSA 105

Query: 451 SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI 510
            +R  A  +  +  ++         IV Q      +     R     AIS         I
Sbjct: 106 CVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAIS--------VI 155

Query: 511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVR 570
                +P++IN  KD   +++   A  + ++    +  +       C VE+ +D + +VR
Sbjct: 156 NDKATIPLLINLLKDPNGDVRNWAAFAI-NINKYDNSDIR-----DCFVEMLQDKNEEVR 209

Query: 571 FFATQAL 577
             A   L
Sbjct: 210 IEAIIGL 216

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 32/258 (12%), Positives = 69/258 (26%), Gaps = 39/258 (15%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           + + I+   + +   R      L  I      E     ++  ++ N D    V     E 
Sbjct: 56  VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN-DKSACVRATAIES 114

Query: 71  LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130
                           ++   +     + T VR     ++  I      +  +     L+
Sbjct: 115 TAQRCKKNPIYSPK--IVEQSQITAFDKSTNVRRATAFAISVIND----KATIP---LLI 165

Query: 131 KRLAAGEWFTAR--VSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLG 188
             L             +  +         +           ++ QD    VR  A   L 
Sbjct: 166 NLLKDPNGDVRNWAAFAININKYDNSDIRDCFV--------EMLQDKNEEVRIEAIIGLS 217

Query: 189 KFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248
                   + L  E+           +++V    +E   A G+L +       +LPV+  
Sbjct: 218 YRKDKRVLSVLCDEL----------KKNTVYDDIIE---AAGELGDKT-----LLPVLDT 259

Query: 249 F-SQDKSWRVRYMVANQL 265
              +     +     ++L
Sbjct: 260 MLYKFDDNEIITSAIDKL 277

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 81.0 bits (199), Expect = 4e-16
 Identities = 73/627 (11%), Positives = 179/627 (28%), Gaps = 79/627 (12%)

Query: 12  AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD---------E 62
              +  L + + ++   + + ++ IA          EL+  + +N   +           
Sbjct: 98  TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLL 157

Query: 63  VLLAMAEELGVFIPYVGGLEYANVLLPPL--ETLCTVEETCVRDKAVESLCR----IGSQ 116
            L  M E        +  +  +N +L  +      T     VR  A+ +L      I + 
Sbjct: 158 ALGYMCESADPQSQAL--VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN 215

Query: 117 MREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDM 176
           M  +    + + +V      E    + ++ G            +K  +      L    M
Sbjct: 216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATM 275

Query: 177 ----PMVRRSAATNLGKFAATVEAAHLKS--------------------------EIMSI 206
                 V                    +                            +++ 
Sbjct: 276 KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTR 335

Query: 207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRY---MVAN 263
             E  +DD  +V + A        +       +  +L  +       +WR R    M   
Sbjct: 336 QNEDPEDDDWNVSMSAGACLQLFAQ-NCGNHILEPVLEFVEQNITADNWRNREAAVMAFG 394

Query: 264 QLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH---- 319
            + +  + V         +P+ + L+ D   +V+   A  + +I   +   +  Q     
Sbjct: 395 SIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG 454

Query: 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII 379
           ++        D  +   +   T+I            +EQL     S + + +P +   +I
Sbjct: 455 VVQACLIGLQDHPKVATNCSWTIIN----------LVEQLAEATPSPIYNFYPALVDGLI 504

Query: 380 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKL 437
              ++++          S   A+  + E     V          +  +LG  +   +++L
Sbjct: 505 GAANRIDN---EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561

Query: 438 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY-LYRMTIL 496
                Q L++   +I    A  +++      P      ++     ++           + 
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV--ADMLMGLFFRLLEKKDSAFIEDDVF 619

Query: 497 QAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--K 552
            AIS LA  +G           P ++ A       +       +  +   +++       
Sbjct: 620 YAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSD 679

Query: 553 SIRPCLVE--LSEDPDVDVRFFATQAL 577
           ++   L +   + +   +++       
Sbjct: 680 AMMNVLAQMISNPNARRELKPAVLSVF 706

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 75.2 bits (184), Expect = 2e-14
 Identities = 83/583 (14%), Positives = 188/583 (32%), Gaps = 58/583 (9%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTR--KELIPFLSE-NNDDDDEVLLAM 67
           I  L     +++ ++R N  R L  +     +        ++ ++ +   D D+ V L  
Sbjct: 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 276

Query: 68  AEELGVF----IPYVGGLEYANVLLPPLETLCTVEETCVRD------------------- 104
            E         I     + +   L+P L       +  +                     
Sbjct: 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN 336

Query: 105 --KAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT 162
             K   +   + + +   +++ H +PL+K L     +  + S   +         + +  
Sbjct: 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP 396

Query: 163 ELRTIYRQLCQ---DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVR 219
            L  +   L Q   D   +VR      L ++A  V +    + +  +  EL +   DS +
Sbjct: 397 YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456

Query: 220 LLAVEGCGALGKLLEPQD-----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 274
            +    C A   L E         +A+IL  +V        +   ++ + +  L ++VG 
Sbjct: 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH 516

Query: 275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQH 334
              + + +   +  L             K   +         +   L  V          
Sbjct: 517 HLNKPEYIQMLMPPLIQ-----------KWNMLKDEDKDLFPLLECLSSVATALQSGFLP 565

Query: 335 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
               +    + +       A +    P        +F  V L+++S L +        L+
Sbjct: 566 YCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV 625

Query: 395 SQS-LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYS 451
           ++S +L  + +  +D+   VR +    +  L                 +    L  +  S
Sbjct: 626 ARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFIS 685

Query: 452 IRDAAANNVKRLAEEFGPDWA--MQHIVPQVLEMINNPHYLYRMT--ILQAISLLAPVMG 507
           + + A   +  ++ + G +    +  ++ Q++E+IN P+    +       I  L  V  
Sbjct: 686 VCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP 745

Query: 508 SEITCSQLLPVVINASKDRVPNIKFNVAK--VLQSLIPIVDQS 548
            E+  + +L   I      + NI+ N  K    + +  ++  +
Sbjct: 746 QEV--APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVN 786

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 69/442 (15%), Positives = 144/442 (32%), Gaps = 89/442 (20%)

Query: 179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE---- 234
           ++R+    L +     +  +    ++ +  +L  +D+   R L+      L   ++    
Sbjct: 29  IQRTVQQKLEQLNQYPDFNNY---LIFVLTKLKSEDEP-TRSLS---GLILKNNVKAHFQ 81

Query: 235 --PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 292
             P      I    +N   D S  +R  V   +  +      +    D++P    LL   
Sbjct: 82  NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-NWPDLLPKLCSLLDSE 140

Query: 293 EAEVRIAAAGKVTKICRILNPEL-------AIQHILPCVKELSSDSSQHVRSALATVIMG 345
           +      A G + KIC      L        +  ++P   +    SS  +RS     +  
Sbjct: 141 DYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ 200

Query: 346 MAPILGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPA 401
                 +     I+  +    +L  DE P+VR N+   L  + +V    LL    +++  
Sbjct: 201 FIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEY 260

Query: 402 IVELAEDRHWRVRLAIIEYIPLLASQ-LGVGFFDDKLGALCMQWLK-------------- 446
           +++  +D+   V L   E+   LA Q +        L  L    +               
Sbjct: 261 MLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320

Query: 447 -----------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTI 495
                         +++R  +A  +  LA  +  D  + HI+P + E++ +  ++ + + 
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHEWVVKESG 379

Query: 496 LQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR 555
           +  +  +A                                  +Q +IP + + +      
Sbjct: 380 ILVLGAIA-------------------------------EGCMQGMIPYLPELI------ 402

Query: 556 PCLVELSEDPDVDVRFFATQAL 577
           P L++   D    VR      L
Sbjct: 403 PHLIQCLSDKKALVRSITCWTL 424

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 45/301 (14%), Positives = 105/301 (34%), Gaps = 22/301 (7%)

Query: 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 260
            +I+ + +E    D   ++    +    L +L +  D   + L  ++   + +    R +
Sbjct: 13  QQILQLLKESQSPDTT-IQRTVQQ---KLEQLNQYPDFNNY-LIFVLTKLKSEDEPTRSL 67

Query: 261 VA----NQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN---- 312
                 N +    +   P      +    +  + D+   +R      +T I         
Sbjct: 68  SGLILKNNVKAHFQNF-PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW 126

Query: 313 PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKD 369
           P+L +  +   +     ++ +    AL  +    A IL  D     +  ++P FL   K 
Sbjct: 127 PDL-LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH 185

Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427
             P +R + ++ ++Q        L+    S +  +  LA D    VR  +   + +L   
Sbjct: 186 SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245

Query: 428 LGVGFFD--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 485
                      +    +Q  +D+  ++   A      LAE+      +   +P+++ ++ 
Sbjct: 246 RMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305

Query: 486 N 486
           N
Sbjct: 306 N 306

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 47.1 bits (111), Expect = 2e-05
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 12/150 (8%)

Query: 439 ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQ 497
           + C+  + D    IR      +  +A +     W    ++P++  ++++  Y        
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 498 AISLLAPVMGSEITCSQ-------LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV 550
           A+  +       +           ++P  +   K   P I+ +    +   I    Q+++
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210

Query: 551 EK--SIRPCLVELSEDPDVDVRFFATQALQ 578
               S    L  L+ D + +VR    +AL 
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALV 240

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 70.9 bits (173), Expect = 6e-14
 Identities = 39/257 (15%), Positives = 101/257 (39%), Gaps = 11/257 (4%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310
           +++ + +R  +AN    L + +        V+   + LL D+   V   A   +  I + 
Sbjct: 4   EEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 311 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 370
              +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIG 119

Query: 371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 430
               ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +      
Sbjct: 120 DEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF 176

Query: 431 GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYL 490
            + +  L  + +  L D    +R +A   +  LA     +  ++ +V + LE +N+   L
Sbjct: 177 KYVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSL 232

Query: 491 YRMTILQAISLLAPVMG 507
              T+ + IS L  + G
Sbjct: 233 VNKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 63.6 bits (154), Expect = 2e-11
 Identities = 43/259 (16%), Positives = 89/259 (34%), Gaps = 13/259 (5%)

Query: 18  LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIP 76
           ++ ++  +R  ++     + + L   +  + ++  L E  +DD   V+      + V   
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 77  YVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIP-LVKRLAA 135
               L Y  +L      L   E   +  +  ++  ++  +  + ++V+  IP L      
Sbjct: 62  TREDL-YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE--KPELVKSMIPVLFANYRI 118

Query: 136 GEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVE 195
           G+  T    S  L  +A  + P  + + +R     L        + +A   +        
Sbjct: 119 GDEKTKINVSYALEEIA-KANPMLMASIVRDFMSML-SSKNREDKLTALNFIEAMG--EN 174

Query: 196 AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 255
           +    +  +     L  D  + VR  AVE   AL  L    D +  ++   +    D S 
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVE---ALVHLATLNDKLRKVVIKRLEELNDTSS 231

Query: 256 RVRYMVANQLYELCEAVGP 274
            V   V   +  L    G 
Sbjct: 232 LVNKTVKEGISRLLLLEGH 250

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 58.9 bits (142), Expect = 8e-10
 Identities = 32/228 (14%), Positives = 83/228 (36%), Gaps = 10/228 (4%)

Query: 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187
            L++ L    W     ++  +  V   +  +  +  L+ ++  L + +   + +  A   
Sbjct: 36  KLIELLDDDLWTV-VKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAF 94

Query: 188 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247
           G+ A   E   L   ++ +     +   +  ++        + K       +A I+   +
Sbjct: 95  GQMAK--EKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP--MLMASIVRDFM 150

Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307
           +    K+   +    N +  + E        +  +P  + LL D +  VR +A   +  +
Sbjct: 151 SMLSSKNREDKLTALNFIEAMGEN--SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHL 208

Query: 308 CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDAT 355
              LN +  ++ ++    E  +D+S  V   +   I  +  + G  ++
Sbjct: 209 AT-LNDK--LRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 56.2 bits (135), Expect = 5e-09
 Identities = 33/211 (15%), Positives = 84/211 (39%), Gaps = 8/211 (3%)

Query: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426
           +++E  D+R   ++  + + +++ +    +S+L  ++EL +D  W V    I  I ++A 
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 427 QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 486
                 ++  L  L     K +   +    A    ++A+E      ++ ++P +      
Sbjct: 62  T-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRI 118

Query: 487 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546
                ++ +  A+  +A      +  + ++   ++    +    K      ++++     
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176

Query: 547 QSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
           + V      P ++ L  D D  VR  A +AL
Sbjct: 177 KYV--NPFLPRIINLLHDGDEIVRASAVEAL 205

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 40/212 (18%)

Query: 173 QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232
           QDD   VRR+AA  LGK         L         +  +D+   VR  A +   ALG++
Sbjct: 29  QDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---ALGQI 77

Query: 233 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN 292
            + +      +  ++   +D+   VR   A  L ++ +           V   ++ L+D 
Sbjct: 78  GDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKALKDE 124

Query: 293 EAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK 352
           +  VRIAAA         L  E+  +  +  + +   D    VR + A  +  +      
Sbjct: 125 DWFVRIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG---- 172

Query: 353 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
               E++      L +      R   ++ L+ 
Sbjct: 173 ----ERVRAAMEKLAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 61.2 bits (149), Expect = 6e-11
 Identities = 44/214 (20%), Positives = 76/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCG 147
           +         +   VR  A  +L +IG     +  VE   PL+K L   + +  R ++  
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGD----ERAVE---PLIKALKDEDAWVRRAAADA 73

Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
           L  +    A E L         +  +D+   VR+SAA  LG+         L        
Sbjct: 74  LGQIGDERAVEPL--------IKALKDEDGWVRQSAAVALGQIGDERAVEPL-------- 117

Query: 208 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
            +  +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 118 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 169

Query: 268 LCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAA 301
           +            V  A  +L        R  A 
Sbjct: 170 IGGE--------RVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 41/222 (18%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           + + I  L++D   +R  +   L      +G+ER  + LI  L    D+D  V  A A+ 
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERAVEPLIKAL---KDEDAWVRRAAADA 73

Query: 71  LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130
           LG       G E A   + PL      E+  VR  A  +L +IG +           PL+
Sbjct: 74  LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLI 118

Query: 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190
           K L   +WF    ++  L  +    A E L         +  +D+   VR+SAA  LG+ 
Sbjct: 119 KALKDEDWFVRIAAAFALGEIGDERAVEPLI--------KALKDEDGWVRQSAADALGEI 170

Query: 191 AATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232
                       + +  E+L +      R +AV     L   
Sbjct: 171 GG--------ERVRAAMEKLAETGTGFARKVAVN---YLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 58.1 bits (141), Expect = 7e-10
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 40/211 (18%)

Query: 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNL 187
             +K L    ++  R ++  L  +    A E L         +  +D+   VRR+AA  L
Sbjct: 23  MYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAADAL 74

Query: 188 GKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIV 247
           G+         L         +  +D+   VR  A     ALG++ + +      +  ++
Sbjct: 75  GQIGDERAVEPL--------IKALKDEDGWVRQSAAV---ALGQIGDERA-----VEPLI 118

Query: 248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI 307
              +D+ W VR   A  L E+ +           V   ++ L+D +  VR +AA     +
Sbjct: 119 KALKDEDWFVRIAAAFALGEIGDE--------RAVEPLIKALKDEDGWVRQSAA---DAL 167

Query: 308 CRILNPELAIQHILPCVKELSSDSSQHVRSA 338
             I         +   +++L+   +   R  
Sbjct: 168 GEIGGER-----VRAAMEKLAETGTGFARKV 193

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 42/215 (19%), Positives = 85/215 (39%), Gaps = 40/215 (18%)

Query: 243 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG 302
           + + +   QD S+ VR   A  L ++ +           V   ++ L+D +A VR AAA 
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDE--------RAVEPLIKALKDEDAWVRRAAAD 72

Query: 303 KVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI 362
            + +I      E A++ ++    +   D    VR + A V +G    +G +  +E L+  
Sbjct: 73  ALGQI----GDERAVEPLI----KALKDEDGWVRQS-AAVALGQ---IGDERAVEPLIK- 119

Query: 363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 422
               LKDE   VR+     L ++          +  +  +++  +D    VR +  + + 
Sbjct: 120 ---ALKDEDWFVRIAAAFALGEIG--------DERAVEPLIKALKDEDGWVRQSAADAL- 167

Query: 423 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 457
               ++G     +++ A   +  +      R  A 
Sbjct: 168 ---GEIG----GERVRAAMEKLAETGTGFARKVAV 195

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 48/235 (20%)

Query: 347 APILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406
           AP+      +E  +      L+D+   VR      L ++          +  +  +++  
Sbjct: 12  APLRADPEKVEMYIK----NLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKAL 59

Query: 407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVYSIRDAAANNVKRLA 464
           +D    VR A  + +         G   D+  +  L ++ LKD+   +R +AA  + ++ 
Sbjct: 60  KDEDAWVRRAAADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIG 109

Query: 465 EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK 524
           +E          V  +++ + +  +  R   + A   L      EI   + +  +I A K
Sbjct: 110 DE--------RAVEPLIKALKDEDWFVR---IAAAFALG-----EIGDERAVEPLIKALK 153

Query: 525 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579
           D    ++ + A  L  +          + +R  + +L+E      R  A   L++
Sbjct: 154 DEDGWVRQSAADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLET 200

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 44/188 (23%), Positives = 70/188 (37%), Gaps = 30/188 (15%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 52  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 104

Query: 71  LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      VE   PL+
Sbjct: 105 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 149

Query: 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190
           K L   + +  + ++  L  +       A+         +L +      R+ A   L   
Sbjct: 150 KALKDEDGWVRQSAADALGEIGGERVRAAM--------EKLAETGTGFARKVAVNYLETH 201

Query: 191 AATVEAAH 198
            +     H
Sbjct: 202 KSFNHHHH 209

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 40/215 (18%)

Query: 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGAL 229
           +  QDD   VRR+AA  LGK         L         +  +D+   VR  A +   AL
Sbjct: 21  KNLQDDSYYVRRAAAYALGKIGDERAVEPL--------IKALKDEDAWVRRAAAD---AL 69

Query: 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 289
           G++ + +      +  ++   +D+   VR   A  L ++ +           V   ++ L
Sbjct: 70  GQIGDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE--------RAVEPLIKAL 116

Query: 290 RDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI 349
           +D +  VRIAAA         L  E+  +  +  + +   D    VR + A  +  +   
Sbjct: 117 KDEDWFVRIAAA-------FAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG- 167

Query: 350 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 384
                  E++      L +      R   ++ L+ 
Sbjct: 168 -------ERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 45/230 (19%)

Query: 228 ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR 287
                 +P+      + + +   QD S+ VR   A  L      +G E      V   ++
Sbjct: 6   HHHHHTDPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDE----RAVEPLIK 52

Query: 288 LLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA 347
            L+D +A VR AAA  + +I      E A++ ++    +   D    VR + A V +G  
Sbjct: 53  ALKDEDAWVRRAAADALGQI----GDERAVEPLI----KALKDEDGWVRQS-AAVALGQ- 102

Query: 348 PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407
             +G +  +E L+      LKDE   VR+     L +    IG     +  +  +++  +
Sbjct: 103 --IGDERAVEPLIK----ALKDEDWFVRIAAAFALGE----IG----DERAVEPLIKALK 148

Query: 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 457
           D    VR +  + +     ++G     +++ A   +  +      R  A 
Sbjct: 149 DEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 44/214 (20%), Positives = 76/214 (35%), Gaps = 39/214 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCG 147
           +         +   VR  A  +L +IG +      VE   PL+K L   + +  R ++  
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDE----RAVE---PLIKALKDEDAWVRRAAADA 68

Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
           L  +    A E L         +  +D+   VR+SAA  LG+         L        
Sbjct: 69  LGQIGDERAVEPL--------IKALKDEDGWVRQSAAVALGQIGDERAVEPL-------- 112

Query: 208 EELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYE 267
            +  +D+   VR+ A     ALG++ + +      +  ++   +D+   VR   A+ L E
Sbjct: 113 IKALKDEDWFVRIAAAF---ALGEIGDER-----AVEPLIKALKDEDGWVRQSAADALGE 164

Query: 268 LCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAA 301
           +            V  A  +L        R  A 
Sbjct: 165 IGGE--------RVRAAMEKLAETGTGFARKVAV 190

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 54/222 (24%), Positives = 85/222 (38%), Gaps = 41/222 (18%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           + + I  L++D   +R  +   L      +G+ER  + LI  L    D+D  V  A A+ 
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERAVEPLIKAL---KDEDAWVRRAAADA 68

Query: 71  LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130
           LG       G E A   + PL      E+  VR  A  +L +IG +           PL+
Sbjct: 69  LGQI-----GDERA---VEPLIKALKDEDGWVRQSAAVALGQIGDE-------RAVEPLI 113

Query: 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190
           K L   +WF    ++  L  +    A E L         +  +D+   VR+SAA  LG+ 
Sbjct: 114 KALKDEDWFVRIAAAFALGEIGDERAVEPLI--------KALKDEDGWVRQSAADALGEI 165

Query: 191 AATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL 232
                       + +  E+L +      R +AV     L   
Sbjct: 166 GGE--------RVRAAMEKLAETGTGFARKVAVN---YLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 37/225 (16%), Positives = 86/225 (38%), Gaps = 44/225 (19%)

Query: 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 416
            + + +++  L+D+   VR      L ++          +  +  +++  +D    VR A
Sbjct: 13  PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRA 64

Query: 417 IIEYIPLLASQLGVGFFDDK--LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 474
             + +         G   D+  +  L ++ LKD+   +R +AA  + ++ +E        
Sbjct: 65  AADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIGDE-------- 106

Query: 475 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV 534
             V  +++ + +  +  R   + A   L      EI   + +  +I A KD    ++ + 
Sbjct: 107 RAVEPLIKALKDEDWFVR---IAAAFALG-----EIGDERAVEPLIKALKDEDGWVRQSA 158

Query: 535 AKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579
           A  L  +          + +R  + +L+E      R  A   L++
Sbjct: 159 ADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 43/184 (23%), Positives = 70/184 (38%), Gaps = 30/184 (16%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEE 70
           +  LI  LK++D  +R  +   L      +G+ER  + LI  L    D+D  V  + A  
Sbjct: 47  VEPLIKALKDEDAWVRRAAADALG----QIGDERAVEPLIKAL---KDEDGWVRQSAAVA 99

Query: 71  LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLV 130
           LG       G E A   + PL      E+  VR  A  +L  IG +      VE   PL+
Sbjct: 100 LGQI-----GDERA---VEPLIKALKDEDWFVRIAAAFALGEIGDE----RAVE---PLI 144

Query: 131 KRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190
           K L   + +  + ++  L  +       A+         +L +      R+ A   L   
Sbjct: 145 KALKDEDGWVRQSAADALGEIGGERVRAAM--------EKLAETGTGFARKVAVNYLETH 196

Query: 191 AATV 194
            + +
Sbjct: 197 KSLI 200

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 63.7 bits (154), Expect = 1e-10
 Identities = 84/558 (15%), Positives = 176/558 (31%), Gaps = 63/558 (11%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN---NDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L  N    +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGGL---EYANVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMREQDVVEHFIPLVK 131
            +      + +N +L  +      EE    V+  A  +L       +     E     + 
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 132 RLAAGEWFT----ARVSSCGLFHVAYPSAPEALKTELRTI-------------------- 167
           ++            RV++            + ++T +                       
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 168 ---YRQLCQDDMPMVRRSA-ATNLGKFAATVEAAHLKSEIMSIFEELTQ---------DD 214
              +  +C ++M +   ++ A   G+        + K  +  +   LTQ         DD
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339

Query: 215 QDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCEA 271
            D     A   C  L       D V H+LP I    ++  WR R    M    + E  E 
Sbjct: 340 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399

Query: 272 VGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILP---CVKELS 328
              +P     +P  + L++D    VR  AA  V +IC +L         L          
Sbjct: 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG 459

Query: 329 SDSSQHVRSALATVIMGMAPILGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 387
             +   V S +      +A    + A + +         L   F  +   ++   D+ + 
Sbjct: 460 LSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG 519

Query: 388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD 447
               + L  S   +++E+ ++       A+ +   ++  +L           +     + 
Sbjct: 520 --HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERL--QQVLQMESHIQSTSDRI 575

Query: 448 KVYSIRDAAANNVKRLAEEFGPDWAMQH---IVPQVLEMINN--PHYLYRMTILQAISLL 502
           +   ++      ++ +  +     A+Q    ++  +L M  +       +   L A+S L
Sbjct: 576 QFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTL 635

Query: 503 APVMGSEITCSQLLPVVI 520
             V+G E    + +    
Sbjct: 636 VEVLGGEF--LKYMEAFK 651

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 57/412 (13%), Positives = 128/412 (31%), Gaps = 27/412 (6%)

Query: 149 FHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFE 208
           +   + +     + E++         +      ++    G   A +        I  +  
Sbjct: 76  YQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVA 135

Query: 209 ELTQDDQDSVRLLAVEGCGALGKLLE------PQDCVAHILPVIVNF--SQDKSWRVRYM 260
            +T  +       +     A+G + +       QD    IL  I+     ++ S  V+  
Sbjct: 136 NVTNPNSTEHMKEST--LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLA 193

Query: 261 VANQLYELCEAVGPEPT----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA 316
             N L    E           R  ++       +  +  VR+AA   + KI   L  +  
Sbjct: 194 ATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS-LYYQYM 252

Query: 317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRL 376
             ++ P +  ++ ++ +     +A   +     +  D  ++  +    +  +   P+   
Sbjct: 253 ETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC-DEEMDLAIEASEAAEQGRPPEHTS 311

Query: 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK 436
              +K      V  +       L    E  +D  W    A    + LLA+          
Sbjct: 312 KFYAKGALQYLVPILT----QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-H 366

Query: 437 LGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---MQHIVPQVLEMINNPHYLYRM 493
           +     + +K+  +  RDAA      + E   P      +   +P ++E++ +P  + R 
Sbjct: 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRD 426

Query: 494 TILQAISLLAPVMGSEITCSQLLPVVINASK---DRVPNIKFNVAKVLQSLI 542
           T    +  +  ++         L  ++          P +  NV     SL 
Sbjct: 427 TAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLA 478

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 63/446 (14%), Positives = 149/446 (33%), Gaps = 33/446 (7%)

Query: 98  EETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA- 156
           ++     KA      + +   E D+V H +P +K       +  R ++   F        
Sbjct: 339 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398

Query: 157 PEALKTELRTIYRQLC---QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD 213
           P  LK  +      L    +D   +VR +AA  +G+    +  A +    ++   +   +
Sbjct: 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458

Query: 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 273
              +   +A   C A   L E     A +       +         ++  +L E  +   
Sbjct: 459 GLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR-- 516

Query: 274 PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA--IQHILPCVKELSSDS 331
           P+  ++++  +    L +            V K   ++   L   +Q             
Sbjct: 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQ 576

Query: 332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVN 386
              ++S L   +  +   +     ++    +  SLL+          V+ + +  +  + 
Sbjct: 577 FNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLV 636

Query: 387 QVIGIDLLS--QSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--FDDKLGALC 441
           +V+G + L   ++  P +    ++   ++V LA +  +  L   L      F D++  L 
Sbjct: 637 EVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLL 696

Query: 442 MQWLKDKVY--SIRDAAANNVKRLAEEFGPD-------------WAMQHIVPQVLEMINN 486
           ++ L ++    S++    +    +A   G +              A Q  V +    + +
Sbjct: 697 LENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVD 756

Query: 487 PHYLYRMTILQAISLLAPVMGSEITC 512
                R + L+A + +   +  +   
Sbjct: 757 YLNELRESCLEAYTGIVQGLKGDQEN 782

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 2e-10
 Identities = 78/472 (16%), Positives = 144/472 (30%), Gaps = 158/472 (33%)

Query: 193 TVEAAHLKSEIMSIFEELTQDD------QDSVR-LLAVEGCGALGKLLEPQDCVAHILPV 245
           T E  +   +I+S+FE+   D+      QD  + +L+ E       ++  +D V+  L +
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRL 67

Query: 246 IVNFSQDKSWRVRYMVANQL---YE-LCEAVGPEPT-RSDVVPAYV----RLLRDNEAEV 296
                  +   V+  V   L   Y+ L   +  E    S +   Y+    RL  DN+   
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--- 124

Query: 297 RIAAAGKVTK--ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK-- 352
                    K  + R+  P L ++  L    EL        R A   +I G+    GK  
Sbjct: 125 ------VFAKYNVSRL-QPYLKLRQAL---LEL--------RPAKNVLIDGVLGS-GKTW 165

Query: 353 -------DATIEQLLP--IF-LSLLKDEFPDVRLNIISKL---------DQVNQVIGIDL 393
                     ++  +   IF L+L     P+  L ++ KL          + +    I L
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 394 LSQSLLPAIVELAEDR----------------HWRV------------------RLAIIE 419
              S+   +  L + +                 W                     L+   
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285

Query: 420 YIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ 479
              +      +    D++ +L +++L  +            + L  E      +    P+
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCR-----------PQDLPRE------VLTTNPR 328

Query: 480 VLEMI-----NNP-------HYLY---RMTILQAISLLAPVMGSEI-----TCSQLLPVV 519
            L +I     +         H         I  ++++L P   +E        S + P  
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP---AEYRKMFDRLS-VFP-- 382

Query: 520 INASKD-RVPNIKFNVAKVLQSL----IPIVDQSVVEKSIRPCLVELSEDPD 566
                   +P        +L  +    I      VV K  +  LVE  + P 
Sbjct: 383 ----PSAHIP------TILLSLIWFDVIKSDVMVVVNKLHKYSLVE--KQPK 422

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 73/458 (15%), Positives = 145/458 (31%), Gaps = 123/458 (26%)

Query: 71  LGVFIP-YVGGLEYANVLLPPLETLCT--VEETCVRDKAVESLCRIGSQMREQ--DVVEH 125
           L VF   +V   +  +V   P   L    ++   +   AV    R+   +  +  ++V+ 
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81

Query: 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR-QLCQDDMPMVRRSAA 184
           F+  V R+    +  + +             P  + T +    R +L  D+    + +  
Sbjct: 82  FVEEVLRINYK-FLMSPIK-------TEQRQPS-MMTRMYIEQRDRLYNDNQVFAKYN-- 130

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGK-LLEPQDCVAHIL 243
                    V       ++     EL        + + ++G    GK  +    C+++ +
Sbjct: 131 ---------VSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 244 ------PVI-VNFSQDKSWRVRYMVANQLY--------ELCEAVGPEPTRSDVVPAYVR- 287
                  +  +N     S      +  +L            +       R   + A +R 
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 288 LLR-----------DNEAEVRIAAAGKVTKICRIL----NPELAIQHILPCVKELSSDSS 332
           LL+            N    +   A  ++  C+IL      ++           LS+ ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTRFKQVT--------DFLSAATT 286

Query: 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD-------VRLNIISKL--- 382
            H+       +   +  L  D   + LL  +L     + P         RL+II++    
Sbjct: 287 THIS------LDHHSMTLTPDEV-KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 383 -------------DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE---YIP--LL 424
                        D++  +I   L    L PA     E R    RL++     +IP  LL
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSL--NVLEPA-----EYRKMFDRLSVFPPSAHIPTILL 392

Query: 425 A------SQLGVGFFDDKL--GALCMQWLKDKVYSIRD 454
           +       +  V    +KL   +L  +  K+   SI  
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 54.8 bits (131), Expect = 4e-08
 Identities = 56/362 (15%), Positives = 105/362 (29%), Gaps = 21/362 (5%)

Query: 21  DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF------ 74
            +     ++ + ++ IA A        ELIP L  N  + +         L         
Sbjct: 101 TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160

Query: 75  IPYVGGLEYANVLLPPLETLCTVEET--CVRDKAVESLCRIGSQMREQDVVEHFIPLVKR 132
           I      + +N +L  +      EE    V+  A  +L       +     E     + +
Sbjct: 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220

Query: 133 LAAGEWFT----ARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLG 188
           +            RV++            + ++T +      +  + M       A    
Sbjct: 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 280

Query: 189 KFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248
           +F + V     + ++     E  +  +           GAL  L+     +   L     
Sbjct: 281 EFWSNV--CDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV---PILTQTLTKQDE 335

Query: 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308
              D  W      A     L      +     V+P     +++ +   R AA      I 
Sbjct: 336 NDDDDDWNP-CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394

Query: 309 RILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLS 365
               P      +   +P + EL  D S  VR   A  +  +  +L + A  +  L   L 
Sbjct: 395 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454

Query: 366 LL 367
            L
Sbjct: 455 CL 456

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 52/409 (12%), Positives = 125/409 (30%), Gaps = 28/409 (6%)

Query: 129 LVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLG 188
            +K     +    +      +   + +     + E++    Q    +      ++    G
Sbjct: 60  QIKNSLTSKDPDIK----AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAG 115

Query: 189 KFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE------PQDCVAHI 242
              A +        I  +   +T  +       +     A+G + +       QD    I
Sbjct: 116 IACAEIPVNQWPELIPQLVANVTNPNSTEHMKEST--LEAIGYICQDIDPEQLQDKSNEI 173

Query: 243 LPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL----RDNEAEV 296
           L  I+   +    S  V+    N L    E       +       ++++    +  +  V
Sbjct: 174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233

Query: 297 RIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI 356
           R+AA   + KI   L  +    ++ P +  ++ ++ +     +A   +     +  +   
Sbjct: 234 RVAALQNLVKIMS-LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-- 290

Query: 357 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 416
             L        +   P    +       +  ++ I       L    E  +D  W    A
Sbjct: 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILT---QTLTKQDENDDDDDWNPCKA 347

Query: 417 IIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA---M 473
               + LLA+          +     + +K+  +  RDAA      + E   P      +
Sbjct: 348 AGVCLMLLATCCEDDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406

Query: 474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 522
              +P ++E++ +P  + R T    +  +  ++         L  ++  
Sbjct: 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 44.4 bits (104), Expect = 8e-05
 Identities = 67/438 (15%), Positives = 140/438 (31%), Gaps = 76/438 (17%)

Query: 169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEG--- 225
           R L       V R AA    K + T +   +K++    +  +  + +  V+   ++    
Sbjct: 42  RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGT 101

Query: 226 -----------CGALGKLLEPQDCVAHILPVIVNF--SQDKSWRVRYMVANQLYELCEAV 272
                         +     P +    ++P +V    + + +  ++      +  +C+ +
Sbjct: 102 ETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI 161

Query: 273 GPEPTRS---DVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNPELAIQH----ILPC 323
            PE  +    +++ A ++ +R  E    V++AA   +             +     I+  
Sbjct: 162 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQV 221

Query: 324 VKELSSDSSQHVRSAL---ATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS 380
           V E +      VR A       IM +     +      L  I +  +K +  +V L  I 
Sbjct: 222 VCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281

Query: 381 KLDQV-NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439
               V ++ + + + +               +  + A+   +P+L   L     +D    
Sbjct: 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDD--- 338

Query: 440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAI 499
                  D  ++   AA   +  LA     D  + H++P + E I NP + YR   + A 
Sbjct: 339 -------DDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAF 390

Query: 500 SLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLV 559
             +            ++  +                                    P L+
Sbjct: 391 GCILEGPEPSQLKPLVIQAM------------------------------------PTLI 414

Query: 560 ELSEDPDVDVRFFATQAL 577
           EL +DP V VR  A   +
Sbjct: 415 ELMKDPSVVVRDTAAWTV 432

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 44.1 bits (103), Expect = 9e-05
 Identities = 51/333 (15%), Positives = 103/333 (30%), Gaps = 37/333 (11%)

Query: 173 QDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS-----VRLLAVEGCG 227
            +    ++ S    +G     ++   L+ +   I   + Q  +       V+L A     
Sbjct: 140 PNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALL 199

Query: 228 ALGKLLEPQDCVAH----ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDV 281
              +  +           I+ V+   +Q    RVR      L ++        E      
Sbjct: 200 NSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPA 259

Query: 282 VPAY-VRLLRDNEAEVRIAAAGKVTKICR------ILNPELAIQHILPCVKELSSDSSQH 334
           + A  +  ++ +  EV +      + +C       I   E A Q   P        S  +
Sbjct: 260 LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT-----SKFY 314

Query: 335 VRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
            + AL  ++  +   L K    +           D+  +        L  +      D++
Sbjct: 315 AKGALQYLVPILTQTLTKQDENDD----------DDDWNPCKAAGVCLMLLATCCEDDIV 364

Query: 395 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLKDKVYS 451
              +LP I E  ++  WR R A +     +            +       ++ +KD    
Sbjct: 365 -PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423

Query: 452 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 484
           +RD AA  V R+ E           +  +L+ +
Sbjct: 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 456

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 54.1 bits (129), Expect = 8e-08
 Identities = 49/357 (13%), Positives = 122/357 (34%), Gaps = 34/357 (9%)

Query: 218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
           VR  A      +  L+ P D    I+  +V F     W+V++     L  L E V  +  
Sbjct: 244 VRDAAAYLLSRIYPLIGPND----IIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD- 298

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 337
              +    V LL   + ++++ +A  +       + +L ++     ++     S      
Sbjct: 299 --GLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-----V 351

Query: 338 ALATVIMGMAPILGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
           +  + +  +  I  ++  +    + L           P+VR +I++ +  +++     L+
Sbjct: 352 SKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLV 411

Query: 395 SQSLL----PAIVELAEDRHWRVRLAIIE-YIPLLASQLGVGFF-----DDKLGALCMQW 444
           ++ +L      I E+A  +  + R  + +  I    + +G   +     DD +    + +
Sbjct: 412 AEVVLIEEKDEIREMAI-KLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYF 470

Query: 445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP 504
            K  +  +        + L  E      +  +   +    +   ++     +QA+    P
Sbjct: 471 TKSGINVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRT-FISLYRSVQALVKDTP 529

Query: 505 VMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL 561
              + I         +    DR  ++K    K  +  +       +   + P   + 
Sbjct: 530 YTPANIE-------ELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDY 579

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 23/193 (11%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 404 ELAEDRHWRVRLAIIE--YIPLLAS----QLGVGFFDDKLGALCMQWLKDKVYSIRDAAA 457
           E      W+ R+  +E  +  +L+     +     + + LG       KD        AA
Sbjct: 23  ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82

Query: 458 NNVKRLAEEFGPDWAMQH----IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC- 512
            +V+ + ++       +     +   +L+            I +A+  +        +  
Sbjct: 83  QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142

Query: 513 --SQLLPVVINASKDRVPNIKFNVAKVLQSLI------PIVDQSVVEKSIRPCLVELSED 564
               +L  ++   K + P I+    ++  + +          Q  ++  + P ++++  D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202

Query: 565 PDVDVRFFATQAL 577
               +R    ++ 
Sbjct: 203 TQPAIRTIGFESF 215

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 47.0 bits (111), Expect = 6e-06
 Identities = 28/217 (12%), Positives = 71/217 (32%), Gaps = 19/217 (8%)

Query: 232 LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----SDVVPAYV 286
           +L  +  +  +            W+ R     + ++   +   +        S+++  Y 
Sbjct: 7   MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 66

Query: 287 RLL-RDNEAEVRIAAAGKVTKICRILNPELAIQH----ILPCVKELSSDSSQHVRSALAT 341
            ++ +D   +    AA  V  IC  L      +     +   + + + +    V  A+  
Sbjct: 67  HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126

Query: 342 VIMGMAPILGKDA---TIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--D 392
            ++ +       A     E +L   L  +K + P +R     + +  + +          
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186

Query: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 429
            L   ++P ++++  D    +R    E   +L    G
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 23/191 (12%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 201 SEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEPQD----CVAHILPVIVNFSQDKSW 255
           S ++ I+  + Q D +     LA +    +   L+        V+ +   +++ +++K  
Sbjct: 59  SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKP 118

Query: 256 RVRYMVANQLYELCE---AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312
            V   +   L  +C+    +       D++   +  ++    ++R+          +   
Sbjct: 119 SVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178

Query: 313 ------PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDA---TIEQLLPIF 363
                        ++P V ++ +D+   +R+        +  I G +    T+E L  + 
Sbjct: 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLK 238

Query: 364 LSLLKDEFPDV 374
              +++    +
Sbjct: 239 RKKIEETVKTL 249

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 37/218 (16%), Positives = 80/218 (36%), Gaps = 9/218 (4%)

Query: 195 EAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKS 254
           ++      +  +F++L+    D+   +A E    L   +   D   H    +    +DK 
Sbjct: 8   DSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67

Query: 255 WRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN 312
                M A         + P  EP    +VPA      + + E++  A+  +  I   +N
Sbjct: 68  TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127

Query: 313 PELAIQHILPCV-KELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKD 369
           P  AI+ +LP +   +   +    + A+      M           + +L+P+    + D
Sbjct: 128 PV-AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWD 186

Query: 370 EFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVE 404
              +V+    + + +  + +    I+    SL+  I +
Sbjct: 187 TKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 81/548 (14%), Positives = 173/548 (31%), Gaps = 81/548 (14%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQ-------MREQDVVEHFIPLVKRLAAGEWFT 140
           +P L  L   E+  V +KA   + ++  +       MR   +V   +  ++     E  T
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE--T 73

Query: 141 ARVSSCGLFHVAYPSAPEALKTELRTIYR--QLCQDDMPMVRRSAAT---NLGKFAATVE 195
           AR ++  L ++++         +   I    ++    +  V   A T   NL       +
Sbjct: 74  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 196 AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LEPQDCVAHI-----LPVIVNF 249
            A   +  +     L          +       L  L    Q+    I        +VN 
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILAYGNQESKLIILASGGPQALVNI 190

Query: 250 SQDKSWR-VRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIAAAGKVTK 306
            +  ++  + +  +  L  L      +P    +  + A    L D    +       +  
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250

Query: 307 ICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA-------PILGKDATIEQL 359
           +      +  ++ +L  + +L      +V +  A ++  +         ++ +   IE L
Sbjct: 251 LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310

Query: 360 LPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWR 412
           +     L   +  D+       L  ++   Q  ++    +     LP +V+L     HW 
Sbjct: 311 VR--TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 368

Query: 413 VRLAIIEYIPLLAS---------QLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRL 463
           +  A +  I  LA          + G       +  L  Q L       +   +    + 
Sbjct: 369 LIKATVGLIRNLALCPANHAPLREQGA------IPRLV-QLLVRAHQDTQRRTSMGGTQQ 421

Query: 464 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITCSQLLPVVIN 521
               G        + +++E               A+ +LA  + +   I     +P+ + 
Sbjct: 422 QFVEGVR------MEEIVE-----------GCTGALHILARDVHNRIVIRGLNTIPLFVQ 464

Query: 522 ASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDPDVDVRFFATQALQ- 578
                + NI+   A VL  L    +  +++  +     L EL    +  V  +A   L  
Sbjct: 465 LLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 524

Query: 579 -SKDQVMM 585
            S+D+   
Sbjct: 525 MSEDKPQD 532

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 40/309 (12%), Positives = 92/309 (29%), Gaps = 48/309 (15%)

Query: 281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRI-LNPELAIQH---ILPCVKELSSDSSQHVR 336
            +P   +LL D +  V   AA  V ++ +   +    ++    +   V+ + + +     
Sbjct: 15  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 337 SALATVIMGMAPIL-GKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL 394
              A  +  ++    G  A  +   +P  + +L      V    I+              
Sbjct: 75  RCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAIT-------------- 120

Query: 395 SQSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGAL-CMQWLKDKVYS 451
                  +  L   +    ++A+     +  + + L             C+Q L      
Sbjct: 121 ------TLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL------ 167

Query: 452 IRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLY-RMTILQAISLLA--PVMGS 508
              A  N   +L                ++ ++    Y     T  + + +L+       
Sbjct: 168 ---AYGNQESKLII------LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

Query: 509 EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVD 568
            I  +  +  +     D    +  N    L++L     +    + +   LV+L    D++
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDIN 278

Query: 569 VRFFATQAL 577
           V   A   L
Sbjct: 279 VVTCAAGIL 287

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 25/142 (17%)

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 337
            S  +      + D    VR   +  ++++      + A + +L  +     +    +R 
Sbjct: 10  HSSGLVPRGSHMADENKWVRRDVSTALSRM-----GDEAFEPLLESLS----NEDWRIRG 60

Query: 338 ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397
           A A  I+G       +  +E L+     LL+D+   VR      L+Q    IG     + 
Sbjct: 61  A-AAWIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GER 104

Query: 398 LLPAIVELAEDRHWRVRLAIIE 419
           +  A+ +LAE      R   + 
Sbjct: 105 VRAAMEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 32/144 (22%), Positives = 51/144 (35%), Gaps = 27/144 (18%)

Query: 88  LPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCG 147
           L P  +    E   VR     +L R+G         E F PL++ L+  +W     ++  
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGD--------EAFEPLLESLSNEDWRIRGAAAWI 65

Query: 148 LFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF 207
           + +     A E L         +L +DD   VR  AA +L +       A +        
Sbjct: 66  IGNFQDERAVEPL--------IKLLEDDSGFVRSGAARSLEQIGGERVRAAM-------- 109

Query: 208 EELTQDDQDSVRLLAVEGCGALGK 231
           E+L +      R +AV     L  
Sbjct: 110 EKLAETGTGFARKVAVN---YLET 130

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 25/133 (18%)

Query: 251 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI 310
            D++  VR  V+  L  +           +     +  L + +  +R AAA     I   
Sbjct: 22  ADENKWVRRDVSTALSRM---------GDEAFEPLLESLSNEDWRIRGAAA----WIIGN 68

Query: 311 LNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDE 370
              E A++ ++  ++    D S  VRS  A  +      +G +     +      L +  
Sbjct: 69  FQDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LAETG 116

Query: 371 FPDVRLNIISKLD 383
               R   ++ L+
Sbjct: 117 TGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 21/158 (13%), Positives = 43/158 (27%), Gaps = 27/158 (17%)

Query: 33  LSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLE 92
           + +                 +    D++  V   ++  L             +    PL 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHM---ADENKWVRRDVSTALS---------RMGDEAFEPLL 48

Query: 93  TLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVA 152
              + E+  +R  A   +     +      VE   PL+K L     F    ++  L  + 
Sbjct: 49  ESLSNEDWRIRGAAAWIIGNFQDE----RAVE---PLIKLLEDDSGFVRSGAARSLEQIG 101

Query: 153 YPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKF 190
                 A++        +L +      R+ A   L   
Sbjct: 102 GERVRAAME--------KLAETGTGFARKVAVNYLETH 131

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 86/598 (14%), Positives = 183/598 (30%), Gaps = 74/598 (12%)

Query: 29  SIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVF-------IPYVGGL 81
           ++ R   +  A+  E   + +    ++ +      +  +AE   +        I Y    
Sbjct: 86  AMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA 145

Query: 82  EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQ-------MREQDVVEHFIPLVKRLA 134
           E A   +P L  L   E+  V +KA   + ++  +       MR   +V     +V+ + 
Sbjct: 146 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS---AIVRTMQ 202

Query: 135 AGEWFTARVSSCG-LFHVAYPSAPEALKTELRTIYR--QLCQDDMPMVRRSAAT---NLG 188
                     + G L ++++         +   I     +    +  V   A T   NL 
Sbjct: 203 NTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262

Query: 189 KFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-LEPQDCVAHI----- 242
                 + A   +  +     L          +       L  L    Q+    I     
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT---TDCLQILAYGNQESKLIILASGG 319

Query: 243 LPVIVNFSQDKSWR-VRYMVANQLYELCEAVGPEPT--RSDVVPAYVRLLRDNEAEVRIA 299
              +VN  +  ++  + +  +  L  L      +P    +  + A    L D    +   
Sbjct: 320 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 379

Query: 300 AAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMA-------PILGK 352
               +  +      +  ++ +L  + +L      +V +  A ++  +         ++ +
Sbjct: 380 CLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 439

Query: 353 DATIEQLLPIFLSLLKDEFPDVR------LNIISKLDQVNQVIGIDLLSQSLLPAIVELA 406
              IE L+     L   +  D+       L  ++   Q  ++    +     LP +V+L 
Sbjct: 440 VGGIEALVR--TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLL 497

Query: 407 EDR-HWRVRLAIIEYIPLLASQLGVGFFDDKLGAL--CMQWLKDKVYSIRDAAANNVKRL 463
               HW +  A +  I  LA          + GA+   +Q L       +   +    + 
Sbjct: 498 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557

Query: 464 AEEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN 521
              F     M+ IV      ++        R+ I                    +P+ + 
Sbjct: 558 Q--FVEGVRMEEIVEACTGALHILARDIHNRIVIRGL---------------NTIPLFVQ 600

Query: 522 ASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
                + NI+   A VL  L    +  +++  +     L EL    +  V  +A   L
Sbjct: 601 LLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 658

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 25/207 (12%), Positives = 65/207 (31%), Gaps = 15/207 (7%)

Query: 115 SQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLC-- 172
           SQ++     +  + L+ +L   ++    +++         ++P +L +    + +     
Sbjct: 37  SQLQTLLGNQAKVSLMSQLFHKDF-KQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLR 95

Query: 173 -QDDMPMVRRSAATNLGKFAATVEAAHLK------SEIMSIFEELTQDDQDSVRLLAVEG 225
             +  P                +            S  +      T + +D++R    + 
Sbjct: 96  FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDI 155

Query: 226 CGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-SDVVPA 284
              L  ++ P      + P++++  + K+ R R      +       G  P +   V   
Sbjct: 156 VNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKT 211

Query: 285 YVRLLRDNEAEVRIAAAGKVTKICRIL 311
               + D +  VR AA   +    +  
Sbjct: 212 VAPFVGDKDVNVRNAAINVLVACFKFE 238

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 24/253 (9%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGV 73
                  D   L   +   +   A         + L   L    +D      A A  +G+
Sbjct: 442 SGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVL---YNDSATSGEAAALGMGL 498

Query: 74  FIPYVGGLEYANVLLPPLETLCTVEETCVRDKAV-ESLCRIGSQMREQDVVEHFIPLVKR 132
            +   G  E  + +    +   T      R  AV  +L   G Q       E    L+ +
Sbjct: 499 CMLGTGKPEAIHDMFTYSQE--TQHGNITRGLAVGLALINYGRQ-------ELADDLITK 549

Query: 133 LAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAA 192
           + A +    R        +AY          ++ +      D    VRR+A   LG    
Sbjct: 550 MLASDESLLRYGGAFTIALAYAGTGNNSA--VKRLLHVAVSDSNDDVRRAAVIALGFVLL 607

Query: 193 TVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD 252
                     +  I + L++     VR       G           +   + V+   ++D
Sbjct: 608 RDYTT-----VPRIVQLLSKSHNAHVRCGTAFALGIAC----AGKGLQSAIDVLDPLTKD 658

Query: 253 KSWRVRYMVANQL 265
               VR      L
Sbjct: 659 PVDFVRQAAMIAL 671

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 60/440 (13%), Positives = 134/440 (30%), Gaps = 44/440 (10%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERT----RKELIPFLSENNDDDDEVLLAMAE 69
           + D+L   D++ ++     ++ +     +       R+ ++  +      DDE+   +A 
Sbjct: 252 IKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVAC 311

Query: 70  ELGVFIPYVGG--LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGS--------QMRE 119
           E  +                +  L+ L   +   +R +A+  LC++GS        +   
Sbjct: 312 ECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFG 371

Query: 120 QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR------QLCQ 173
                      +R          +       +AY +     K +L            L +
Sbjct: 372 DGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR 431

Query: 174 DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL 233
                      T         E   +  E++ + +   Q   +   L  V+       +L
Sbjct: 432 GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVL 491

Query: 234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV-----PAYVRL 288
                   I   +   ++ +S   + ++A  L  +C     +  R  VV      A +R+
Sbjct: 492 ----ANEGITTALCALAKTESHNSQELIARVLNAVCGL---KELRGKVVQEGGVKALLRM 544

Query: 289 LRDNEAEVRIAAAGKVTKICRILNPELAIQH------ILPCVKELSSDSSQHVRSALATV 342
             +   + +  A   + +I   +NPE++         I P +  L  D +          
Sbjct: 545 ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604

Query: 343 IMGMA---PILGKDATIEQLLPIFLSLLKDEFPDVRLN---IISKLDQVNQVIGIDLLSQ 396
           +  +A     + +    EQ +      L ++   +       +  L     VI +   + 
Sbjct: 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNN 664

Query: 397 SLLPAIVELAEDRHWRVRLA 416
             +  +  L ED       A
Sbjct: 665 DRVKFLALLCEDEDEETATA 684

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 44.5 bits (104), Expect = 7e-05
 Identities = 33/270 (12%), Positives = 86/270 (31%), Gaps = 29/270 (10%)

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRS 337
               + A + L  D +  +R  A  ++ +       E   +      + L +D S     
Sbjct: 63  ADSAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE--- 116

Query: 338 ALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 397
               V   +  I   DA  +  L    S +      VR   I  L    + +  ++L++ 
Sbjct: 117 -FNLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKE 173

Query: 398 LLPAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLKD 447
           +   I+  ++          + + + I+  +  L +  G     +   +   L   +   
Sbjct: 174 VEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPS 233

Query: 448 KVYSIRDAAANNVKRLAEEFGPDWA--------MQHIVPQVLEMINNPHYL-YRMTILQA 498
               + D      ++    F  +           + ++P +  +      L  ++ +L+ 
Sbjct: 234 DPDCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKL 292

Query: 499 ISLLAPVMGSEITCSQLLPVVINASKDRVP 528
           ++ ++   G        L  + +   + +P
Sbjct: 293 LAEMSSFCGDMEKLETNLRKLFDKLLEYMP 322

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Length = 240

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 4/108 (3%)

Query: 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS 217
              K  L  +  ++ +D+   V+   A    +F           + + I +E  +     
Sbjct: 99  SKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCK----KIEYKKALPIIDEWLKSSNLH 154

Query: 218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
            R  A EG          ++     +  I +  +D S  VR  V N L
Sbjct: 155 TRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNAL 202

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 41/290 (14%), Positives = 78/290 (26%), Gaps = 33/290 (11%)

Query: 170 QLCQDDMPMVRRSAATNLGKFAA-------TVEAAHLKSEIMSIFEELTQDDQD-SVRLL 221
            L       +   A   LG  A         V        ++++                
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209

Query: 222 AVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT- 277
                  L +   P    D V  ILP +V         V       +  L +        
Sbjct: 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEM 269

Query: 278 --RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSS 332
             +  VVP  V+LL   E  +   A   +  I    +    ++     L     L ++  
Sbjct: 270 VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPK 329

Query: 333 QHVRSALATVIMGMA---PILGKDATIEQLLPIFLSLLKDEFPDVRL-------NIISKL 382
            +++      +  +        +      L+P  + +L       +        N  S  
Sbjct: 330 TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIPLLASQLG 429
                V    L+   ++  ++ L   +  ++    L  I  I   A +LG
Sbjct: 390 TVEQIVY---LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG 436

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 64/445 (14%), Positives = 146/445 (32%), Gaps = 45/445 (10%)

Query: 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAA-----TVEAAHLKSEIMSIFEELTQ 212
             L+ EL  + +QL  DD    + SA     +  +      ++       +  + E + +
Sbjct: 83  SQLQQELPQMTQQLNSDD-MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 141

Query: 213 DDQDSVRLLAVEGCGALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELC 269
           +  + ++L A      +      Q  V   A  +P+ +      S  V+      L  + 
Sbjct: 142 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 201

Query: 270 EAVGPEPT----RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVK 325
                +      + + +   + L   N+  +   A   ++ +CR   P+     +   + 
Sbjct: 202 -GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 260

Query: 326 EL-----SSDSSQHVRSALATVIMGMAPILGKDATIEQ-LLPIFLSLLKDEFPDVR---L 376
            L     S D+   V +  A   +   P     A I+  +    + LL  E   V+   L
Sbjct: 261 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 320

Query: 377 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR---LAIIEYIPLLASQLGVGFF 433
             +  +   N +    +++  +LPA+  L       ++      I  I    ++      
Sbjct: 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 380

Query: 434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRM 493
           D  L    ++ L+   Y  +  A              WA+ +     L+  +   YL   
Sbjct: 381 DANLIPPLVKLLEVAEYKTKKEAC-------------WAISNASSGGLQRPDIIRYLVSQ 427

Query: 494 TILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKS 553
             ++ +  L  +  + I     L  + N  K    + +     + ++   I     +EK 
Sbjct: 428 GCIKPLCDLLEIADNRI-IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK- 485

Query: 554 IRPCLVELSEDPDVDVRFFATQALQ 578
               +    ++ +  +   A + ++
Sbjct: 486 ----IFNCQQNENDKIYEKAYKIIE 506

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960

 Score = 41.4 bits (96), Expect = 7e-04
 Identities = 49/407 (12%), Positives = 116/407 (28%), Gaps = 55/407 (13%)

Query: 167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLK---SEIMSIFEELTQDDQDSVRL--L 221
           I R L   D    RR+    L +     E        + +    ++   D   + +   L
Sbjct: 365 IRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDL 424

Query: 222 AVEGCGAL-----------GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 270
            +    AL                  + V      I       +     +  + +  +  
Sbjct: 425 YIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYT 484

Query: 271 AVG--PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA------------ 316
                 +    +++P     L+ +E  V   AA  + KI  I     +            
Sbjct: 485 FRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544

Query: 317 -----IQHILPCVKELSSDSSQHVRSA-LATVIMGMAPILGKDAT------IEQLLPIFL 364
                +++++  + +  S   +   +  L   I  +               + Q + I  
Sbjct: 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVT 604

Query: 365 SLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + K+     F       I  +    Q   + LL  S++P  + +  +        + + 
Sbjct: 605 IMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQI 664

Query: 421 IPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQ 474
           I  +  Q               L     + LK  + ++     + +K  +  F     + 
Sbjct: 665 IAFVVEQSATIPESIKPLAQPLLAPNVWE-LKGNIPAVTRLLKSFIKTDSSIFPDLVPVL 723

Query: 475 HIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN 521
            I  +++       + +   +L+ I LL  +        Q+  +++ 
Sbjct: 724 GIFQRLIASKAYEVHGFD--LLEHIMLLIDMNRLRPYIKQIAVLLLQ 768

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	587
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1qgr_A	876	Protein (importin beta subunit); transport recepto	100.0
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.95
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.94
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.92
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.91
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.9
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.89
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.89
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.88
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.88
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.87
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.85
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.84
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.83
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.82
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.8
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.8
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.79
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.78
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.78
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.76
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.76
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.73
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.73
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.72
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.71
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.7
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.69
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.68
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.67
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.67
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.67
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.64
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.63
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.62
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.61
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.6
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.6
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.58
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.58
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.57
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.57
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.56
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.55
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.55
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.54
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.54
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.53
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.53
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.53
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.52
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.49
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.48
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.42
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.42
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.4
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.38
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.38
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.38
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.34
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.32
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.31
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.21
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.2
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.18
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	99.17
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.17
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.16
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.15
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.12
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.1
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.09
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.08
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.07
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.06
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.02
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.02
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.96
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.92
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.91
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.76
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	98.7
3grl_A	651	General vesicular transport factor P115; vesicle t	98.37
3grl_A	651	General vesicular transport factor P115; vesicle t	98.35
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.29
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.26
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.21
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.07
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.03
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.79
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.75
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.38
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	97.18
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.12
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.09
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.07
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	96.95
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	95.63
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	94.57
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	93.83
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	92.76
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	92.7
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	92.67
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	92.6
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	92.5
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	91.48
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	91.42
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	91.33
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	91.23
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	89.47
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	89.41
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.36
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	88.83
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	87.51
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	87.16
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.79
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	86.69
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	85.83
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	85.22
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	85.21
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	84.34
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	84.23
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	82.51
1w9c_A	321	CRM1 protein, exportin 1; nuclear protein, nuclear	82.37
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	81.38
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	80.21

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=2e-63  Score=517.89  Aligned_cols=580  Identities=59%  Similarity=0.964  Sum_probs=541.1

Q ss_pred             CCCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCc
Q 007863            2 AMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGL   81 (587)
Q Consensus         2 ~~~~~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~   81 (587)
                      +++|++++|+..+++.|+|+|+++|..|++.+..++..+|++..+.+++|++.+..+++++||..+++.++.+.+.+|+.
T Consensus         3 ~~~~~~~~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~   82 (588)
T 1b3u_A            3 ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP   82 (588)
T ss_dssp             SCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG
T ss_pred             cccCCCcCcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcH
Confidence            45789999999999999999999999999999999999999999999999999888888899999999999999988888


Q ss_pred             chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHH
Q 007863           82 EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALK  161 (587)
Q Consensus        82 ~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~  161 (587)
                      .+.+.+++.+..+..++++.+|..|++++..++..++++.....++|++.++.+++++..|..++.+++.++...++...
T Consensus        83 ~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~  162 (588)
T 1b3u_A           83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK  162 (588)
T ss_dssp             GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            88889999999998899999999999999999999998888889999999999988999999999999999999988888


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhc
Q 007863          162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAH  241 (587)
Q Consensus       162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  241 (587)
                      +.++|.+..+++|+++.||..++++++.++...+.+.+.+.++|.+..+++|+++.||..|+.+++.++...+++...+.
T Consensus       163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  242 (588)
T 1b3u_A          163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEAL  242 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999999999999999999998887777888999999999999999999999999999998888767788


Q ss_pred             hHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHH
Q 007863          242 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAI  317 (587)
Q Consensus       242 l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~  317 (587)
                      ++|.+..+++|++|.||..++++++.++...+.+.....++|.+..+++|++++||..++.+++.++..++++    .+.
T Consensus       243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~  322 (588)
T 1b3u_A          243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM  322 (588)
T ss_dssp             THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHH
Confidence            9999999999999999999999999999887765445678999999999999999999999999999988865    566


Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~  397 (587)
                      +.++|.+..+++|++|.||.+++.+++.++..+|.+...+.++|.+..+++|++++||..++.+++.+...++.+.+.+.
T Consensus       323 ~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~  402 (588)
T 1b3u_A          323 SQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS  402 (588)
T ss_dssp             HTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            88999999999999999999999999999999988777788999999999999999999999999999998888777788


Q ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchH
Q 007863          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIV  477 (587)
Q Consensus       398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  477 (587)
                      ++|.+..++.|++|++|..++..++.++..+|.+.+.+.++|.+..+++|+++.||..|+.+++.++..+|.+++.+.++
T Consensus       403 ~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~ll  482 (588)
T 1b3u_A          403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATII  482 (588)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTH
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence            99999999999999999999999999999999887778899999999999999999999999999999999987778899


Q ss_pred             HHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHH
Q 007863          478 PQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPC  557 (587)
Q Consensus       478 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~  557 (587)
                      |.+..+..++++.+|.+++.+++.++..+|.+.+.+.++|.+...++|++++||..++++++.++..++.+...+.++|.
T Consensus       483 p~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~  562 (588)
T 1b3u_A          483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPI  562 (588)
T ss_dssp             HHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHH
Confidence            99999999999999999999999999998888888999999999999999999999999999999999887777889999


Q ss_pred             HHHhcCCCCccHHHHHHHHHHHHH
Q 007863          558 LVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       558 l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      |.++.+|++++||..|.+|++.+.
T Consensus       563 l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          563 LEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCchhHHHHHHHHHHHhh
Confidence            999999999999999999999875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=4.8e-49  Score=409.60  Aligned_cols=531  Identities=21%  Similarity=0.294  Sum_probs=477.0

Q ss_pred             cccccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHH
Q 007863           53 LSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKR  132 (587)
Q Consensus        53 l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~  132 (587)
                      +....+++.++|..+++.++.++...|.......++|.|.... ++++.+|..+.++++.+...++.......++|.+..
T Consensus        16 ~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~   94 (588)
T 1b3u_A           16 IDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLES   94 (588)
T ss_dssp             HHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHH
T ss_pred             HHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            3344567889999999999887776665555677888887766 778899999999999988887766667789999998


Q ss_pred             hhcCCCCcchhhHHhhhhhhccCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc
Q 007863          133 LAAGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELT  211 (587)
Q Consensus       133 l~~~~~~~~r~~a~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~  211 (587)
                      +..+++..+|..+...++.+....+++ ..+.++|++..+.+++++.+|..++..++.++...+. ...+.++|.+..++
T Consensus        95 l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~-~~~~~l~~~l~~l~  173 (588)
T 1b3u_A           95 LATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLC  173 (588)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHH
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh
Confidence            888888899999999999988887765 5667899999999999999999999999999877664 45788999999999


Q ss_pred             ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC
Q 007863          212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD  291 (587)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  291 (587)
                      +|+++.||..++.+++.++...+.+...+.++|.+..+++|+++.||..|+.+++.++...+.+...+.++|.+..+++|
T Consensus       174 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d  253 (588)
T 1b3u_A          174 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAED  253 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccC
Confidence            99999999999999999999988776778899999999999999999999999999998876544445689999999999


Q ss_pred             ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH----HHHHhHHHHHHHhc
Q 007863          292 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD----ATIEQLLPIFLSLL  367 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l  367 (587)
                      ++|.||..++.+++.++...+++.+.+.++|.+.++++|+++.||.+++.+++.++..++.+    .+.+.++|.+..++
T Consensus       254 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l  333 (588)
T 1b3u_A          254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV  333 (588)
T ss_dssp             SSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh
Confidence            99999999999999999999888777889999999999999999999999999999888755    56788999999999


Q ss_pred             CCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC
Q 007863          368 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD  447 (587)
Q Consensus       368 ~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  447 (587)
                      +|+++.||..++.+++.++..+|.+...+.++|.+..+++|+++.+|..++..++.+....+.+...+.++|.+...+.|
T Consensus       334 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d  413 (588)
T 1b3u_A          334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAED  413 (588)
T ss_dssp             TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998876667899999999999999999999999999999888877778899999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCC
Q 007863          448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV  527 (587)
Q Consensus       448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~  527 (587)
                      ++|.+|..++.+++.++..+|.+++.+.++|.+...+.|+++.+|..++.+++.+...+|.+++.+.++|.+..+..|++
T Consensus       414 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~  493 (588)
T 1b3u_A          414 AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPN  493 (588)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSC
T ss_pred             CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999988766789999999999999999999999999999999988788899999999999999


Q ss_pred             ccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          528 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       528 ~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      +.+|..++.+++.++..++.+.+...++|.|.+++.|++++||..+.++++.+.+.+|
T Consensus       494 ~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~  551 (588)
T 1b3u_A          494 YLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998888888999999999999999999999999999987655

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=4.6e-36  Score=323.83  Aligned_cols=526  Identities=18%  Similarity=0.148  Sum_probs=421.5

Q ss_pred             CCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhH-------hhhhHHHH
Q 007863           58 DDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDV-------VEHFIPLV  130 (587)
Q Consensus        58 ~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~ll~~~  130 (587)
                      ++++.+|..++.+++.++..- .....+.+++.+.+.+.++++.+|+.++.+++.+++..++..-       ...++|.+
T Consensus       101 ~~~~~vr~~~a~~i~~ia~~~-~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l  179 (852)
T 4fdd_A          101 DSSPLIRATVGILITTIASKG-ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKF  179 (852)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHT-TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhc-CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHH
Confidence            566789999999999887654 2345678899999988999999999999999999998765421       34577778


Q ss_pred             HHhhcCCCCcchhhHHhhhhhhccCCCHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHH
Q 007863          131 KRLAAGEWFTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMS  205 (587)
Q Consensus       131 ~~l~~~~~~~~r~~a~~l~~~~~~~~~~~---~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~  205 (587)
                      .+...+++..+|..|+..+..+....+..   ....+++.+..++.|+++.||..++++|+.+++..+.  ..+.+.+++
T Consensus       180 ~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~  259 (852)
T 4fdd_A          180 LQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE  259 (852)
T ss_dssp             TTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            77778888899999998887776655443   3457888888899999999999999999999987654  245567888


Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHhc-----------CC-----------CchHHHH
Q 007863          206 IFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFS-----------QD-----------KSWRVRY  259 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~-----------~d-----------~~~~vR~  259 (587)
                      .+...++|+++.||..|++.+..+++....    ......++|.+...+           .|           .+|.+|.
T Consensus       260 ~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~  339 (852)
T 4fdd_A          260 YMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRK  339 (852)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHH
T ss_pred             HHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHH
Confidence            888999999999999999999998764221    123456777777665           34           5789999


Q ss_pred             HHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHH
Q 007863          260 MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRS  337 (587)
Q Consensus       260 ~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~  337 (587)
                      .++.+++.++...+. ...+.++|.+.+.++|++|.+|.+|+.+++.+++..+..  .+.+.++|.+..+++|+++.||.
T Consensus       340 ~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~  418 (852)
T 4fdd_A          340 CSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS  418 (852)
T ss_dssp             HHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            999999999998874 334568899999999999999999999999998866542  34577899999999999999999


Q ss_pred             HHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCcH
Q 007863          338 ALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWR  412 (587)
Q Consensus       338 ~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~  412 (587)
                      +++.+++.++..++.   ..+...+++.+...+.|.++.||..++.+++.+++..+..  .+.+.+++.+...+++.+..
T Consensus       419 ~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~  498 (852)
T 4fdd_A          419 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHK  498 (852)
T ss_dssp             HHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChH
Confidence            999999999987653   3456678899999999999999999999999999877654  24567777777788777777


Q ss_pred             HHHHHHHHHHHHHHhhChhh----HHHHHHHHHH---HHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhh
Q 007863          413 VRLAIIEYIPLLASQLGVGF----FDDKLGALCM---QWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEM  483 (587)
Q Consensus       413 vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~  483 (587)
                      ....++++++.++...|...    +.+.++|.+.   ..+.|.++++| .++++++.++..+|..+  +.+.+++.+.+.
T Consensus       499 ~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~  577 (852)
T 4fdd_A          499 NLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNL  577 (852)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence            77778888888887766433    5677888777   45677778886 78999999999998764  234455544433


Q ss_pred             hc-----------------CCccHHHHHHHHHHHHhhcccChHH--HH--HhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          484 IN-----------------NPHYLYRMTILQAISLLAPVMGSEI--TC--SQLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       484 l~-----------------~~~~~~r~~a~~~l~~l~~~~~~~~--~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                      +.                 .++..+|..++.+++.++..+|.+.  +.  ..+++.+..++.|+++.+|..+..+++.++
T Consensus       578 l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~  657 (852)
T 4fdd_A          578 VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLT  657 (852)
T ss_dssp             HHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence            22                 2356789999999999999887652  22  578999999999999999999999999999


Q ss_pred             hhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          543 PIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       543 ~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      ..++..  .+...++|.+.+.+++.++.||..|.++++.++..+|+
T Consensus       658 ~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~  703 (852)
T 4fdd_A          658 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI  703 (852)
T ss_dssp             HHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence            877653  55567899999988888899999999999999988874

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=100.00  E-value=7.3e-36  Score=322.25  Aligned_cols=569  Identities=14%  Similarity=0.152  Sum_probs=447.0

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CCchHHHHHHHHHhcccccCcCCc-------ch
Q 007863           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGL-------EY   83 (587)
Q Consensus        12 ~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~~~~~~~~~-------~~   83 (587)
                      ..+++.|.++++.+|..+.+.++.++...++ ..|++++|.+.+.. +++..+|..+..+++.+++..+..       ..
T Consensus        93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~  171 (852)
T 4fdd_A           93 SECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP  171 (852)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence            4566778899999999999999999887754 57899999988755 456788888888888776644422       12


Q ss_pred             HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhh--HhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH--
Q 007863           84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD--VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~--~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~--  159 (587)
                      ...+++.+.+++.++++.||..|+.++..++...+...  ....+++.+.....+++..+|..++..++.+....++.  
T Consensus       172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~  251 (852)
T 4fdd_A          172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL  251 (852)
T ss_dssp             HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            45677888888889999999999999998776544321  22356777777778888899999998888877655432  


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH--h--hhhhHHHHHHHHHHhc-----------cc----------
Q 007863          160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATV--E--AAHLKSEIMSIFEELT-----------QD----------  213 (587)
Q Consensus       160 -~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~--~--~~~~~~~i~~~l~~l~-----------~d----------  213 (587)
                       +.+.+++.+..++.|+++.||..+++.+..+++..  .  -..+.+.++|.+...+           .|          
T Consensus       252 ~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~  331 (852)
T 4fdd_A          252 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT  331 (852)
T ss_dssp             GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence             55678899999999999999999999999887521  1  1345567778777665           33          


Q ss_pred             -CchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC--CcccchHHHHHHhcC
Q 007863          214 -DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRLLR  290 (587)
Q Consensus       214 -~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~  290 (587)
                       ..+.+|..+..+++.++...++ ...+.++|.+...+.|++|.+|..|+.+++.++...+..  .....++|.+..+++
T Consensus       332 ~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~  410 (852)
T 4fdd_A          332 ISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS  410 (852)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT
T ss_pred             cccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC
Confidence             3456899999999999988764 466789999999999999999999999999998654321  223568999999999


Q ss_pred             CChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHH
Q 007863          291 DNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLS  365 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~  365 (587)
                      |+++.||.+++.+++.++...++.   .+...+++.+.+.+.|+++.||..++.+++.+++..+..  .+.+.+++.+..
T Consensus       411 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~  490 (852)
T 4fdd_A          411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF  490 (852)
T ss_dssp             CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH
Confidence            999999999999999999876542   455778899999999999999999999999998877643  356778888888


Q ss_pred             hcCCCChHHHHHHHHHhHHhhhhhchh----hHhhhhHHHHHH---HhcCCCcHHHHHHHHHHHHHHHhhChhhH--HHH
Q 007863          366 LLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVE---LAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDK  436 (587)
Q Consensus       366 ~l~d~~~~vr~~a~~~l~~i~~~~~~~----~~~~~~~~~l~~---~~~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~  436 (587)
                      .+++........+..+++.++...|..    .+.+.++|.+.+   .+.|.++.+| .++++++.++..+|..+.  .+.
T Consensus       491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~  569 (852)
T 4fdd_A          491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEP  569 (852)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHH
Confidence            888777777777788888887766643    355677887774   3456677776 789999999998886432  233


Q ss_pred             HHHHHHHHcC-----------------CCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHhhhcCCccHHHHHH
Q 007863          437 LGALCMQWLK-----------------DKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINNPHYLYRMTI  495 (587)
Q Consensus       437 l~~~l~~~l~-----------------d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~~~~~~~r~~a  495 (587)
                      +++.++..+.                 .++.++|..++..++.+++.+|.++.    ...+++.+...+.|++..+|..+
T Consensus       570 i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a  649 (852)
T 4fdd_A          570 VYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS  649 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHH
Confidence            4443333321                 23677999999999999999987642    26789999999999999999999


Q ss_pred             HHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCC--ccH
Q 007863          496 LQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPD--VDV  569 (587)
Q Consensus       496 ~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~--~~V  569 (587)
                      ..+++.++..++.+  .+...++|.+.+.+.+..+.+|..|+++++.++..++.  .++...+++.|..++++++  ..+
T Consensus       650 ~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~  729 (852)
T 4fdd_A          650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTL  729 (852)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchH
Confidence            99999999877754  35678999999999888999999999999999988865  3666788999998877764  479


Q ss_pred             HHHHHHHHHHHHHH
Q 007863          570 RFFATQALQSKDQV  583 (587)
Q Consensus       570 r~~a~~al~~l~~~  583 (587)
                      +.+|..++++++..
T Consensus       730 ~~~a~~~igrl~~~  743 (852)
T 4fdd_A          730 LENTAITIGRLGYV  743 (852)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=1.6e-35  Score=331.97  Aligned_cols=575  Identities=13%  Similarity=0.157  Sum_probs=450.8

Q ss_pred             cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC---hhhhhhhhccccccc-cCCchHHHHHHHHHhcccccCcCCcch
Q 007863            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGLEY   83 (587)
Q Consensus         8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~---~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~~~~~~~~~~~   83 (587)
                      -+.+..+++.+.|+|+++|.+|.+.|......-.   .+.....+++.+.+. .+.++++|.+++.+++.++..++. .+
T Consensus         5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~   83 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQ   83 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HH
T ss_pred             HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HH
Confidence            4568999999999999999999988866432110   012234566655553 367889999999999999887664 55


Q ss_pred             HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh--------hHhhhhHHHHHHhhc-CCCCcchhhHHhhhhhhcc
Q 007863           84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--------DVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYP  154 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~ll~~~~~l~~-~~~~~~r~~a~~l~~~~~~  154 (587)
                      .+.+++.+...+.++++.+|..|+.+++.++..+++.        ...+.++|.+.+... ++++.+|..++..+..+..
T Consensus        84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~  163 (1230)
T 1u6g_C           84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS  163 (1230)
T ss_dssp             HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence            6777887777778889999999999999999998865        256788999988887 4677888888888877664


Q ss_pred             CCCH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHh
Q 007863          155 SAPE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALG  230 (587)
Q Consensus       155 ~~~~---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~  230 (587)
                      ..++   .+.+.+++.+...+.++++.||..++.+++.++...+++. .+.+++.+...+.+. ++.+|..++.+++.++
T Consensus       164 ~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~  242 (1230)
T 1u6g_C          164 RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS  242 (1230)
T ss_dssp             HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred             HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence            3322   3668899999999999999999999999999998766532 334455554444433 3578889999999998


Q ss_pred             cccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhcC----------------
Q 007863          231 KLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLLR----------------  290 (587)
Q Consensus       231 ~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~----------------  290 (587)
                      ...++  ..+.+.++|.+...++|.++.+|..++.+++.++..++...  ..+.++|.+...+.                
T Consensus       243 ~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~  322 (1230)
T 1u6g_C          243 RQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENA  322 (1230)
T ss_dssp             HHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence            87765  23457799999999999999999999999999998777543  23345666655442                


Q ss_pred             ---------------------CChHHHHHHHHHhHHHHHHhhCH--HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhh
Q 007863          291 ---------------------DNEAEVRIAAAGKVTKICRILNP--ELAIQHILPCVKELSSDSSQHVRSALATVIMGMA  347 (587)
Q Consensus       291 ---------------------d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~  347 (587)
                                           |..|.||.+|+.++..++...+.  ..+.+.++|.+...+.|.++.||.+++.++..+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~  402 (1230)
T 1u6g_C          323 MDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL  402 (1230)
T ss_dssp             ----------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence                                 12367899999999999987664  4566788899988899999999999999998887


Q ss_pred             hhhch---------------------HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--hhHhhhhHHHHHH
Q 007863          348 PILGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVE  404 (587)
Q Consensus       348 ~~~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~  404 (587)
                      ...+.                     ..+.+.++|.+.+.++|+++.+|..++..++.++...+.  ..+.+.++|.+..
T Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~  482 (1230)
T 1u6g_C          403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIF  482 (1230)
T ss_dssp             HHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHH
T ss_pred             HHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHH
Confidence            65432                     234566778888889999999999999999999876542  2345778999999


Q ss_pred             HhcCCCc--HHHHHHHHHHHHHHHhhChhhH---HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh-------h--
Q 007863          405 LAEDRHW--RVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP-------D--  470 (587)
Q Consensus       405 ~~~~~~~--~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-------~--  470 (587)
                      .+.|+++  .+|..++..+..+....+++.+   .+.++|.+...++|+++.||..++.+++.+++.+|.       .  
T Consensus       483 ~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~  562 (1230)
T 1u6g_C          483 SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDAT  562 (1230)
T ss_dssp             HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCH
T ss_pred             HHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence            9999876  8999999999999887777643   456788999999999999999999999999998876       2  


Q ss_pred             hhhhchHHHHHhhh--cCCccHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh-
Q 007863          471 WAMQHIVPQVLEMI--NNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-  545 (587)
Q Consensus       471 ~~~~~~~~~l~~~l--~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~-  545 (587)
                      .+.+.++|.+...+  .|++..+|..++.+++.++...|...  +...+++.+...+.+  +..|..++++++.+.... 
T Consensus       563 ~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~  640 (1230)
T 1u6g_C          563 PYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPL  640 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhCcc
Confidence            24578899988888  77888999999999999998877652  457778888777764  468999999999987643 


Q ss_pred             --chHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          546 --DQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       546 --~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                        +...+...++|.|...+.|+++.+|.++..+++.+....++
T Consensus       641 ~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~  683 (1230)
T 1u6g_C          641 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD  683 (1230)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred             ccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence              23567789999999999999999999999999999887653

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=2.1e-34  Score=313.07  Aligned_cols=574  Identities=15%  Similarity=0.179  Sum_probs=451.0

Q ss_pred             HHHHHHHhcCc-cHHHHHHHhhcHHHHHHHhChh-----hhhhhhcccccccc-CC--chHHHHHHHHHhcccccCcCCc
Q 007863           11 IAVLIDELKND-DIQLRLNSIRRLSTIARALGEE-----RTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGGL   81 (587)
Q Consensus        11 ~~~l~~~l~s~-d~~~R~~a~~~l~~~~~~~~~~-----~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~~~~~~~~~   81 (587)
                      +..+++.+.++ |+.+|..|+..+..++..++++     .....++|.+...+ ++  +.+||..++++++.+..+++..
T Consensus       136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~  215 (861)
T 2bpt_A          136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNN  215 (861)
T ss_dssp             HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888 9999999999999998877653     23445666665543 33  6789999999998876654421


Q ss_pred             ----chHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh--hHhh-hhHHHHHHhhcCCCCcchhhHHhhhhhhcc
Q 007863           82 ----EYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVE-HFIPLVKRLAAGEWFTARVSSCGLFHVAYP  154 (587)
Q Consensus        82 ----~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~-~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~  154 (587)
                          .....+++.+...+.++++.+|..+++++..+++..+..  .... .+++++.....+.+..+|..++..+..+..
T Consensus       216 ~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~  295 (861)
T 2bpt_A          216 MEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                123457777778888899999999999999999876532  1122 566777677777778888888887766544


Q ss_pred             CC-----------------C---HHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 007863          155 SA-----------------P---EALKTELRTIYRQLCQD-------DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIF  207 (587)
Q Consensus       155 ~~-----------------~---~~~~~~l~~~l~~l~~~-------~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l  207 (587)
                      ..                 .   ......++|.+...+.+       +++.+|..+..+|+.++...++ ...+.+++.+
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l  374 (861)
T 2bpt_A          296 EEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFV  374 (861)
T ss_dssp             HHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHH
T ss_pred             HHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHH
Confidence            31                 1   12346677777766653       4578999999999999998874 6678899999


Q ss_pred             HHhcccCchhHHHHHHHHHHHHhcccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC----CCcccc
Q 007863          208 EELTQDDQDSVRLLAVEGCGALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRSD  280 (587)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~  280 (587)
                      .+.+++.++.+|..++.+++.+++...+   ....+.++|.+...+.|+++.||..++.+++.++..++.    ......
T Consensus       375 ~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  454 (861)
T 2bpt_A          375 EQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPG  454 (861)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH
T ss_pred             HHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            9999999999999999999999977653   234566888999999999999999999999999988764    233456


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---H---HHHHhHHHHHhHhcC--CCcHHHHHHHHHHHHhhhhhhch
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---E---LAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGK  352 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~---~~~~~~~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~  352 (587)
                      ++|.+...++|+ +.||..++.++..+++.+++   +   .+.+.+++.+.+.+.  |.++.+|..++.+++.++...+.
T Consensus       455 ~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          455 VVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            888888889887 89999999999999998762   1   455778888888886  44589999999999999988775


Q ss_pred             H--HHHHhHHHHHHHhcCC---------------CChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCc-H
Q 007863          353 D--ATIEQLLPIFLSLLKD---------------EFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHW-R  412 (587)
Q Consensus       353 ~--~~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~-~  412 (587)
                      +  .+...++|.+...+.+               ....+|..++.++..++..+|..  .+.+.++|.+...+.+.++ .
T Consensus       534 ~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  613 (861)
T 2bpt_A          534 TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAF  613 (861)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCc
Confidence            3  2445666766665542               24568899999999999888764  3456788888888888877 9


Q ss_pred             HHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc
Q 007863          413 VRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH  488 (587)
Q Consensus       413 vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~  488 (587)
                      +|..++..++.++...+..+  +.+.++|.+...+.++++.+|..++.+++.++..+|..+  +...++|.+.+.+.+++
T Consensus       614 v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~  693 (861)
T 2bpt_A          614 IEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPN  693 (861)
T ss_dssp             THHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCcc
Confidence            99999999999998887653  457789999999999999999999999999999888653  45778888888887765


Q ss_pred             --cHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCC-----------ccHHHHHHHHHHHHHhhhch-----H
Q 007863          489 --YLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ-----S  548 (587)
Q Consensus       489 --~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~l~~~~~~-----~  548 (587)
                        ..+|..++.+++.++..+|..  .+.+.++|.+...+....           ..+|..++++++.++..++.     .
T Consensus       694 ~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~  773 (861)
T 2bpt_A          694 ARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF  773 (861)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG
T ss_pred             ccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence              789999999999999887765  357889999988876422           46899999999999988762     2


Q ss_pred             HHHHhHHHHHHHhcCCC----CccHHHHHHHHHHHHHHHh-hc
Q 007863          549 VVEKSIRPCLVELSEDP----DVDVRFFATQALQSKDQVM-MS  586 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d~----~~~Vr~~a~~al~~l~~~~-~~  586 (587)
                      .+...+++.+...+.|+    ++.||..|..+++.+++.+ |.
T Consensus       774 ~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~  816 (861)
T 2bpt_A          774 PYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDG  816 (861)
T ss_dssp             GGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCc
Confidence            45566777777777774    8899999999999999988 54

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=100.00  E-value=1.3e-34  Score=314.76  Aligned_cols=572  Identities=12%  Similarity=0.098  Sum_probs=451.3

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccC-C-chHHHHHHHHHhcccccCcCC-----cchH
Q 007863           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-D-DDEVLLAMAEELGVFIPYVGG-----LEYA   84 (587)
Q Consensus        12 ~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~-~~~v~~~~~~~l~~~~~~~~~-----~~~~   84 (587)
                      ..+++.|.++++.+|..+.+.+..++...+|...|++++|.+.+... + ++.+|..+..+++.+....+.     ..+.
T Consensus        98 ~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~  177 (861)
T 2bpt_A           98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHH
Confidence            46778899999999999999999999888776679999999988654 4 678888888888887765443     2356


Q ss_pred             hhhhhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcChh----hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH
Q 007863           85 NVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE  158 (587)
Q Consensus        85 ~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~  158 (587)
                      ..+++.+...+.++  ++.||..|++++..+...++..    .....+++.+.+...++++.+|..++..+..+....++
T Consensus       178 ~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~  257 (861)
T 2bpt_A          178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            67778877777777  8999999999999986544321    12356788888888888888998888877776544332


Q ss_pred             ---HHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-------------------hhhHHHHHHHHHHhccc--
Q 007863          159 ---ALKT-ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------------AHLKSEIMSIFEELTQD--  213 (587)
Q Consensus       159 ---~~~~-~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~i~~~l~~l~~d--  213 (587)
                         .+.. .+++.+...+.|.++.+|..+++.+..++.....                   ..+...++|.+...+.+  
T Consensus       258 ~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence               2444 7888888889999999999999999998876421                   12335677777766653  


Q ss_pred             -----CchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHH
Q 007863          214 -----DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAY  285 (587)
Q Consensus       214 -----~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l  285 (587)
                           +++.+|..+..++..++..++. ...+.+++.+.+.+++.+|.+|..++.+++.++...+...   ..+.++|.+
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l  416 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNCGN-HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSI  416 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccCcHHHHHHHHHHHHHHHccH-hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                 3468999999999999988763 3567788999999999999999999999999875433111   123578888


Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHHhhCH----HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch------HHH
Q 007863          286 VRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK------DAT  355 (587)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~  355 (587)
                      ...++|+++.||..++.+++.++..+++    ..+.+.++|.+.+.++|+ +.||..++.++..++..++.      ..+
T Consensus       417 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~  495 (861)
T 2bpt_A          417 LNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF  495 (861)
T ss_dssp             HHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred             HHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence            8999999999999999999999988764    345678899998888886 99999999999999887651      235


Q ss_pred             HHhHHHHHHHhcCC--CChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHhcC---------------CCcHHHHH
Q 007863          356 IEQLLPIFLSLLKD--EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAED---------------RHWRVRLA  416 (587)
Q Consensus       356 ~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~~~---------------~~~~vr~~  416 (587)
                      .+.+++.+...+.+  .++.+|..++.+++.++...+.+.  +...++|.+.+.+.+               ....+|..
T Consensus       496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~  575 (861)
T 2bpt_A          496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN  575 (861)
T ss_dssp             HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence            56778888888874  448999999999999998877542  334566666655442               24568889


Q ss_pred             HHHHHHHHHHhhChh--hHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHH
Q 007863          417 IIEYIPLLASQLGVG--FFDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLY  491 (587)
Q Consensus       417 ~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~  491 (587)
                      ++..++.++...|..  .+.+.+++.+...+++.++ .+|+.++.+++.++...|.++  +.+.++|.+.+.++++++.+
T Consensus       576 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~v  655 (861)
T 2bpt_A          576 ILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPV  655 (861)
T ss_dssp             HHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHH
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHH
Confidence            999999999888764  3457788989999888877 899999999999999888764  45789999999998889999


Q ss_pred             HHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCC--ccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCC
Q 007863          492 RMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP  565 (587)
Q Consensus       492 r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~  565 (587)
                      |..++.+++.++..+|..  .+...+++.+...+.+++  +.+|..++.+++.++..++..  .+.+.++|.+.+.+...
T Consensus       656 r~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~  735 (861)
T 2bpt_A          656 SITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTK  735 (861)
T ss_dssp             HHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence            999999999999887754  357788999999888865  899999999999999888764  55678888888865532


Q ss_pred             C-----------ccHHHHHHHHHHHHHHHhh
Q 007863          566 D-----------VDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       566 ~-----------~~Vr~~a~~al~~l~~~~~  585 (587)
                      .           ..+|..+.+++..+...+|
T Consensus       736 ~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~  766 (861)
T 2bpt_A          736 PENGTLEALDYQIKVLEAVLDAYVGIVAGLH  766 (861)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1           4689999999999988776

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=100.00  E-value=6.6e-35  Score=327.03  Aligned_cols=571  Identities=14%  Similarity=0.190  Sum_probs=446.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccc-cCCchHHHHHHHHHhcccccCcCCc--------
Q 007863           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGL--------   81 (587)
Q Consensus        11 ~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~~~~~~~~~--------   81 (587)
                      +..+++.|.+.++.+|..|+..++.++..+++ .....+++.+.+. .++++.+|..++.+++.++..++..        
T Consensus        50 l~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~  128 (1230)
T 1u6g_C           50 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  128 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence            56688899999999999999999999887765 4556778777664 4677899999999999988776643        


Q ss_pred             chHhhhhhHHHhhhc-CchhHHHHHHHHHHHHHHhhcChh--hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH
Q 007863           82 EYANVLLPPLETLCT-VEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE  158 (587)
Q Consensus        82 ~~~~~l~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~  158 (587)
                      .+.+.++|.+...+. ++++.+|..|+.++..+++..+..  .....+++.+.....++...+|..++..++.+....++
T Consensus       129 ~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~  208 (1230)
T 1u6g_C          129 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  208 (1230)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH
Confidence            257888998888877 588999999999999999765431  12355677777777777788999999999888877765


Q ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863          159 ALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .....+++.+...+. +.++.+|..++++++.++...+.  ..+.+.++|.+...++|+++.+|..+..+++.+....+.
T Consensus       209 ~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          209 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            544445555544433 33457899999999999988765  235577899999999999999999999999999987765


Q ss_pred             h--hhhhchHHHHHHhcC-------------------------------------CCchHHHHHHHHHHHHHHHHhCC--
Q 007863          236 Q--DCVAHILPVIVNFSQ-------------------------------------DKSWRVRYMVANQLYELCEAVGP--  274 (587)
Q Consensus       236 ~--~~~~~l~~~l~~~~~-------------------------------------d~~~~vR~~a~~~l~~l~~~~~~--  274 (587)
                      +  .+.+.++|.+.+.+.                                     |.+|.+|..|+.+++.++...+.  
T Consensus       289 ~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~  368 (1230)
T 1u6g_C          289 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  368 (1230)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHH
Confidence            3  355666776655442                                     23588999999999999875443  


Q ss_pred             CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---------------------HHHHHhHHHHHhHhcCCCcH
Q 007863          275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---------------------ELAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---------------------~~~~~~~~~~l~~~~~d~~~  333 (587)
                      ......++|.+...++|.+++||..++.++..+....+.                     ..+.+.+++.+.+.++|++|
T Consensus       369 ~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~  448 (1230)
T 1u6g_C          369 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV  448 (1230)
T ss_dssp             HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCH
Confidence            223456788888889999999999999999999886642                     23446677777888999999


Q ss_pred             HHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCCh--HHHHHHHHHhHHhhhhhchhh---HhhhhHHHHHHHh
Q 007863          334 HVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFP--DVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA  406 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~l~~i~~~~~~~~---~~~~~~~~l~~~~  406 (587)
                      .+|.+++.+++.++...+.  ..+.+.++|.+...++|..+  .+|..++..+..+....+.+.   +.+.++|.+...+
T Consensus       449 ~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l  528 (1230)
T 1u6g_C          449 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV  528 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHH
Confidence            9999999999998876542  23567889999999999875  999999999999988777653   4567899999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHHHHHhChhh--hh
Q 007863          407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWL--KDKVYSIRDAAANNVKRLAEEFGPDW--AM  473 (587)
Q Consensus       407 ~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~  473 (587)
                      .|++|++|..++..++.+++.++.         ..+.+.++|.++..+  .|.+..+|..|+.+++.++...|..+  +.
T Consensus       529 ~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~  608 (1230)
T 1u6g_C          529 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL  608 (1230)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred             cccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhH
Confidence            999999999999999999988775         245678999999988  78899999999999999999888764  23


Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHH
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVV  550 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~  550 (587)
                      ..+++.+...+.+  ...|..++.+++.++....   ...+...++|.+...+.+.+..+|.+++.+++.++...+....
T Consensus       609 ~~~l~~L~~~l~~--e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~  686 (1230)
T 1u6g_C          609 PNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT  686 (1230)
T ss_dssp             HHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHhcc--chhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCC
Confidence            5566666665554  3478899999999886432   3567899999999999999999999999999999988764323


Q ss_pred             HHhHHHHHHH---hcCCCCccHHHHHHHHHHHHHHHh
Q 007863          551 EKSIRPCLVE---LSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       551 ~~~i~~~l~~---l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                      .+.+.|.+..   +++|+|+.++..+..++..+.+..
T Consensus       687 ~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~  723 (1230)
T 1u6g_C          687 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY  723 (1230)
T ss_dssp             HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence            3455555544   467889999999988888886543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=5.6e-33  Score=302.44  Aligned_cols=570  Identities=17%  Similarity=0.166  Sum_probs=406.3

Q ss_pred             HHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc-CC--chHHHHHHHHHhcccccCcCC---cchHhhh
Q 007863           14 LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGG---LEYANVL   87 (587)
Q Consensus        14 l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~~~~~~~~---~~~~~~l   87 (587)
                      +++.|.+.++.+ ..+.+.++.++...++...|++++|.+.+.. ++  ++.+|..+..+++.+++..++   ..+.+.+
T Consensus        95 ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~l  173 (876)
T 1qgr_A           95 VLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEI  173 (876)
T ss_dssp             HHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH
T ss_pred             HHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHH
Confidence            667787777777 8888888888887777677888888887754 44  567888888888877664432   2345666


Q ss_pred             hhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcChh----hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH---
Q 007863           88 LPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE---  158 (587)
Q Consensus        88 ~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~---  158 (587)
                      ++.+.+.+.++  +..+|..|++++..++..++..    .....+++.+.+...+++..+|..++..+..+....++   
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~  253 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME  253 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence            67777766665  6788999999888877654422    12234677777777776777888887777666544332   


Q ss_pred             HHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-----------------------hhhHHHHHHHHHHhcc--
Q 007863          159 ALKT-ELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEELTQ--  212 (587)
Q Consensus       159 ~~~~-~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-----------------------~~~~~~i~~~l~~l~~--  212 (587)
                      .+.. .+++.+.....+.++.||..+++.+..+++....                       ......++|.+...+.  
T Consensus       254 ~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~  333 (876)
T 1qgr_A          254 TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ  333 (876)
T ss_dssp             HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc
Confidence            2334 6777777777888888898888888888765310                       0122455666555553  


Q ss_pred             -----cCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---CcccchHHH
Q 007863          213 -----DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPA  284 (587)
Q Consensus       213 -----d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~  284 (587)
                           |+++.+|..+..++..++...++ ...+.+++.+...+.|++|.+|.+++.+++.++...+++   .....++|.
T Consensus       334 ~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~  412 (876)
T 1qgr_A          334 DENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT  412 (876)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                 34567888888888888877763 346677888888888888999999988888877543311   112357788


Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCH----HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc---------
Q 007863          285 YVRLLRDNEAEVRIAAAGKVTKICRILNP----ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---------  351 (587)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---------  351 (587)
                      +...++|+++.||..|+.+++.++..+++    ..+.+.+++.+...+.|+ +.||..++.+++.++...+         
T Consensus       413 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~  491 (876)
T 1qgr_A          413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQ  491 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccc
Confidence            88888888888999999998888887654    244567788888878775 8888888888888876643         


Q ss_pred             -------hHHHHHhHHHHHHHhcCCC---ChHHHH---------------------------------------------
Q 007863          352 -------KDATIEQLLPIFLSLLKDE---FPDVRL---------------------------------------------  376 (587)
Q Consensus       352 -------~~~~~~~l~~~l~~~l~d~---~~~vr~---------------------------------------------  376 (587)
                             -..+.+.++|.+...+.+.   +..+|.                                             
T Consensus       492 ~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~  571 (876)
T 1qgr_A          492 EEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST  571 (876)
T ss_dssp             CCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCST
T ss_pred             ccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCCh
Confidence                   1134456777777666543   234444                                             


Q ss_pred             -----------HHHHHhHHhhhhhc-hh--hHhhhhHHHHHHHhcCCC--cHHHHHHHHHHHHHHHhhChhh--HHHHHH
Q 007863          377 -----------NIISKLDQVNQVIG-ID--LLSQSLLPAIVELAEDRH--WRVRLAIIEYIPLLASQLGVGF--FDDKLG  438 (587)
Q Consensus       377 -----------~a~~~l~~i~~~~~-~~--~~~~~~~~~l~~~~~~~~--~~vr~~~~~~l~~l~~~~~~~~--~~~~l~  438 (587)
                                 .++.+++.++..+| ..  .+.+.++|.+...+.+.+  +.+|..++..++.++...+..+  +.+.++
T Consensus       572 ~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~  651 (876)
T 1qgr_A          572 SDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFK  651 (876)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                       44444555554444 21  123456677777776654  6899999999999998776533  346788


Q ss_pred             HHHHHHcCCC-chHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChH--HH
Q 007863          439 ALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE--IT  511 (587)
Q Consensus       439 ~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~--~~  511 (587)
                      |.+...+.+. ++.+|..++.+++.++...|...  +.+.+++.+.+.+.+  .+..+|..++.+++.++..+|.+  .+
T Consensus       652 ~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~  731 (876)
T 1qgr_A          652 PFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKY  731 (876)
T ss_dssp             HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGG
T ss_pred             HHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHH
Confidence            9999999887 89999999999999999887653  346788888888776  45789999999999999877765  35


Q ss_pred             HHhHHHHHHhhcCCCC-----------ccHHHHHHHHHHHHHhhhch------------HHHHHhHHHHHHHhcCCC--C
Q 007863          512 CSQLLPVVINASKDRV-----------PNIKFNVAKVLQSLIPIVDQ------------SVVEKSIRPCLVELSEDP--D  566 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~-----------~~vR~~a~~~l~~l~~~~~~------------~~~~~~i~~~l~~l~~d~--~  566 (587)
                      .+.++|.+...++++.           ..+|..+++++..++..++.            ..+...+++.+..+..|+  +
T Consensus       732 l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~  811 (876)
T 1qgr_A          732 LEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHT  811 (876)
T ss_dssp             HHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCC
T ss_pred             HHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            7888898888877543           27999999999988877643            134456667777776777  6


Q ss_pred             ccHHHHHHHHHHHHHHHhhc
Q 007863          567 VDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       567 ~~Vr~~a~~al~~l~~~~~~  586 (587)
                      ..||..|..+++.+.+.+|.
T Consensus       812 ~~vr~~a~~~l~~l~~~~~~  831 (876)
T 1qgr_A          812 DGVVACAAGLIGDLCTAFGK  831 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHhCc
Confidence            78999999999999988864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=100.00  E-value=8.7e-32  Score=293.08  Aligned_cols=574  Identities=14%  Similarity=0.157  Sum_probs=425.5

Q ss_pred             HHHHHHHhcCc--cHHHHHHHhhcHHHHHHHhChhh---hhhhhcccccccc-CC--chHHHHHHHHHhcccccCcCCcc
Q 007863           11 IAVLIDELKND--DIQLRLNSIRRLSTIARALGEER---TRKELIPFLSENN-DD--DDEVLLAMAEELGVFIPYVGGLE   82 (587)
Q Consensus        11 ~~~l~~~l~s~--d~~~R~~a~~~l~~~~~~~~~~~---~~~~l~p~l~~~~-~~--~~~v~~~~~~~l~~~~~~~~~~~   82 (587)
                      +..+++.+.++  ++.+|..|++.+..++..++++.   ..+.++|.+.+.+ ++  +.++|..+.++++.++.+++...
T Consensus       130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~  209 (876)
T 1qgr_A          130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF  209 (876)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888  99999999999999987765432   2344566655543 33  57899999999988776554211


Q ss_pred             ----hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh---hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccC
Q 007863           83 ----YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ---DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPS  155 (587)
Q Consensus        83 ----~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~  155 (587)
                          ....+++.+...+.+++..+|..+++++..+++..+..   .+...+++++.....+++..+|..++..+..+...
T Consensus       210 ~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~  289 (876)
T 1qgr_A          210 DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (876)
T ss_dssp             TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence                11346777777778889999999999999999876532   22226777777777777777787777665554321


Q ss_pred             C----------------------C--HHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 007863          156 A----------------------P--EALKTELRTIYRQLCQ-------DDMPMVRRSAATNLGKFAATVEAAHLKSEIM  204 (587)
Q Consensus       156 ~----------------------~--~~~~~~l~~~l~~l~~-------~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~  204 (587)
                      .                      .  ....+.+++.+...+.       ++++.+|.++..+++.++...++ ...+.++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~l  368 (876)
T 1qgr_A          290 EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVL  368 (876)
T ss_dssp             HHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHHHH
T ss_pred             HHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHHHH
Confidence            0                      0  1133566777766653       45688999999999999998874 6678899


Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccChh---hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC----Cc
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT  277 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~  277 (587)
                      +.+...++|+++.+|..++.+++.++...+++   .+.+.++|.+...++|+++.||..|+.+++.++...+..    ..
T Consensus       369 ~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~  448 (876)
T 1qgr_A          369 PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY  448 (876)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred             HHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence            99999999999999999999999999877632   345678999999999999999999999999999876542    23


Q ss_pred             ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC----------------HHHHHHhHHHHHhHhcCCC---cHHHHH-
Q 007863          278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN----------------PELAIQHILPCVKELSSDS---SQHVRS-  337 (587)
Q Consensus       278 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~----------------~~~~~~~~~~~l~~~~~d~---~~~vr~-  337 (587)
                      ...+++.+...++|+ +.||..++.+++.++...+                -..+.+.++|.+.+.+.+.   +..+|. 
T Consensus       449 l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~  527 (876)
T 1qgr_A          449 LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSS  527 (876)
T ss_dssp             HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHH
Confidence            446788888888886 8999999999999988754                1134566777777666543   233444 


Q ss_pred             -------------------------------------------------------HHHHHHHhhhhhhc-hH--HHHHhH
Q 007863          338 -------------------------------------------------------ALATVIMGMAPILG-KD--ATIEQL  359 (587)
Q Consensus       338 -------------------------------------------------------~a~~~l~~l~~~~~-~~--~~~~~l  359 (587)
                                                                             .++.+++.++..++ ..  .+.+.+
T Consensus       528 ~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l  607 (876)
T 1qgr_A          528 AYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVV  607 (876)
T ss_dssp             HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHH
Confidence                                                                   44444444444444 21  134557


Q ss_pred             HHHHHHhcCCCC--hHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhh--
Q 007863          360 LPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF--  432 (587)
Q Consensus       360 ~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~--  432 (587)
                      +|.+...+++..  +.+|..++.+++.++...|..  .+.+.++|.+...+.+. ++.+|..++..++.++...+...  
T Consensus       608 ~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~  687 (876)
T 1qgr_A          608 MASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIP  687 (876)
T ss_dssp             HHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            777888887764  479999999999999877653  33466888888888887 89999999999999998887532  


Q ss_pred             HHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCc-----------cHHHHHHHH
Q 007863          433 FDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPH-----------YLYRMTILQ  497 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~-----------~~~r~~a~~  497 (587)
                      +.+.+++.+...+.+  .+.++|..++.+++.++..+|.++  +.+.++|.+.+.+.++.           ..+|..++.
T Consensus       688 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~  767 (876)
T 1qgr_A          688 FCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLE  767 (876)
T ss_dssp             HHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHH
Confidence            346788888888876  467899999999999999888874  34667777777665432           278999999


Q ss_pred             HHHHhhcccCh------------HHHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhch-H--HH-HHhHHHHHH
Q 007863          498 AISLLAPVMGS------------EITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQ-S--VV-EKSIRPCLV  559 (587)
Q Consensus       498 ~l~~l~~~~~~------------~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~-~--~~-~~~i~~~l~  559 (587)
                      ++..+...++.            ..+.+.+++.+.....|+  +..+|..|+.+|+.++..++. .  .+ .+.+++.+.
T Consensus       768 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll  847 (876)
T 1qgr_A          768 AYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELL  847 (876)
T ss_dssp             HHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHH
Confidence            88877765432            235667777777776777  789999999999999999876 2  23 445677777


Q ss_pred             H-hcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          560 E-LSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       560 ~-l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      + .+.|++++||..|..|++.+++.=.+
T Consensus       848 ~~~l~~~~~~~r~~a~~a~~~~~~~~~~  875 (876)
T 1qgr_A          848 TEGRRSKTNKAKTLARWATKELRKLKNQ  875 (876)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhhcCCHhHHHHHHHHHHHHHHhhcC
Confidence            7 88899999999999999999976443

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.95  E-value=3.6e-24  Score=215.25  Aligned_cols=389  Identities=15%  Similarity=0.151  Sum_probs=299.1

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc-------------
Q 007863          166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL-------------  232 (587)
Q Consensus       166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~-------------  232 (587)
                      .++.. +.++++.+|+.|.+.|..+...- .+.+...++.++..  .+.++.+|..|...|..+.+.             
T Consensus         5 ~~L~~-~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~   80 (462)
T 1ibr_B            5 TILEK-TVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW   80 (462)
T ss_dssp             HHHHH-TTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             HHHHH-hcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence            33434 45788999999999999865421 12344444444332  223688999999999988643             


Q ss_pred             --cChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCC--hHHHHHHHHHhHHHHH
Q 007863          233 --LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDN--EAEVRIAAAGKVTKIC  308 (587)
Q Consensus       233 --~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~  308 (587)
                        ++ +.....+...+...+.+.++.+ ..++.+++.++....+...+++++|.+...++++  ++.+|..++.+++.++
T Consensus        81 ~~l~-~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~  158 (462)
T 1ibr_B           81 LAID-ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC  158 (462)
T ss_dssp             HTSC-HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred             hcCC-HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence              22 2234556777777888888888 9999999999987654445788999999999888  8999999999999999


Q ss_pred             HhhCHH---HHHHhHHHHHhHhcCCC--cHHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChHHHHHHH
Q 007863          309 RILNPE---LAIQHILPCVKELSSDS--SQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNII  379 (587)
Q Consensus       309 ~~~~~~---~~~~~~~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~  379 (587)
                      +...++   .+.+.+++.+..+++|+  ++.||..++++++.+...+..    ....+.+++.+...+.+.++.+|..++
T Consensus       159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~  238 (462)
T 1ibr_B          159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL  238 (462)
T ss_dssp             HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            876432   34467888899999888  799999999999987654432    122345678888888999999999999


Q ss_pred             HHhHHhhhhhchh--hHhh-hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-------------------C-hhh---H
Q 007863          380 SKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-------------------G-VGF---F  433 (587)
Q Consensus       380 ~~l~~i~~~~~~~--~~~~-~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-------------------~-~~~---~  433 (587)
                      .++..++...+..  .+.+ .+++.+...+.+.+..+|..+++.+..++...                   . ...   +
T Consensus       239 ~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (462)
T 1ibr_B          239 QNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGA  318 (462)
T ss_dssp             HHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHH
Confidence            9999998776532  2345 78888888889999999999999998887652                   0 111   2


Q ss_pred             HHHHHHHHHHHcC-------CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc
Q 007863          434 DDKLGALCMQWLK-------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM  506 (587)
Q Consensus       434 ~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  506 (587)
                      .+.++|.++..+.       |.+|.+|..|..+++.++..+|. .....++|.+...+.+++|.+|.+++.+++.++...
T Consensus       319 ~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~  397 (462)
T 1ibr_B          319 LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP  397 (462)
T ss_dssp             HHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred             hhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCC
Confidence            3667888887774       34689999999999999999984 455788999999999999999999999999999865


Q ss_pred             ChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHh
Q 007863          507 GSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL  561 (587)
Q Consensus       507 ~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l  561 (587)
                      ..+   .+...++|.+...++|+++.||..|+.+|+.++..+++.    .+...++|.|.+.
T Consensus       398 ~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~  459 (462)
T 1ibr_B          398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEG  459 (462)
T ss_dssp             CTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            532   345789999999999999999999999999999987763    3445566665543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.94  E-value=1.5e-24  Score=222.51  Aligned_cols=505  Identities=13%  Similarity=0.152  Sum_probs=342.7

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccc-cCCchHHHHHHHHHhcccccCcCCcchHhhhh
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN-NDDDDEVLLAMAEELGVFIPYVGGLEYANVLL   88 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~-~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~   88 (587)
                      .+..+.+.|.++|...|..++..+-.+ ...|.+.  ..+.+.+.+. .+++.++++.+.-.+..+++.  ..+......
T Consensus        14 e~~~i~~~L~~~~~~~k~~~~~kli~~-~~~G~d~--~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~--~~e~~~l~~   88 (591)
T 2vgl_B           14 EIFELKAELNNEKKEKRKEAVKKVIAA-MTVGKDV--SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS--QPDMAIMAV   88 (591)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHH-HHTTCCC--GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH--SHHHHHTTH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHH-HHCCCCh--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc--CchHHHHHH
Confidence            578888889998888888887776543 3345432  1222222222 233445554444444333221  112222233


Q ss_pred             hHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHH
Q 007863           89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIY  168 (587)
Q Consensus        89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l  168 (587)
                      +.+.+.+.++|+.+|..|+++++.+.                                          .++..+.+.+.+
T Consensus        89 n~l~kdL~~~n~~ir~~AL~~L~~i~------------------------------------------~~~~~~~l~~~l  126 (591)
T 2vgl_B           89 NSFVKDCEDPNPLIRALAVRTMGCIR------------------------------------------VDKITEYLCEPL  126 (591)
T ss_dssp             HHHGGGSSSSSHHHHHHHHHHHHTCC------------------------------------------SGGGHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHcCC------------------------------------------hHHHHHHHHHHH
Confidence            44444445556666655554444332                                          234455667777


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh---hhhhchHHH
Q 007863          169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPV  245 (587)
Q Consensus       169 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~  245 (587)
                      ..++.|+++.||+.|+.+++.++...++......+++.+..+++|+++.|+..|+.++..++..-+..   ......++.
T Consensus       127 ~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~  206 (591)
T 2vgl_B          127 RKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK  206 (591)
T ss_dssp             HHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHH
Confidence            88889999999999999999998843321111358889999999999999999999999988764421   112234555


Q ss_pred             HHHhcCCCchHHHHHHHHHHHHHHHHhCCC-CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh--CHH---HHHHh
Q 007863          246 IVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL--NPE---LAIQH  319 (587)
Q Consensus       246 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~--~~~---~~~~~  319 (587)
                      +.+.+.+.++..+...++.++.++   +.+ .....+++.+..++++.++.|+..|++++..+...+  +++   ...+.
T Consensus       207 Ll~~l~~~~~~~q~~il~~l~~l~---~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~  283 (591)
T 2vgl_B          207 LLTALNECTEWGQIFILDCLSNYN---PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKK  283 (591)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHTSC---CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHH
T ss_pred             HHHcCCCCCchHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence            555566777778877777665443   111 112357888888999999999999999999986543  222   22345


Q ss_pred             HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhH
Q 007863          320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (587)
Q Consensus       320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~  399 (587)
                      +.+.+..++ +++..+|..++.+++.+....+. .+.+.+. .+....+|+ ..||..++..+..++..-+    .+.++
T Consensus       284 ~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~~~~-~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv  355 (591)
T 2vgl_B          284 LAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQEIK-VFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVL  355 (591)
T ss_dssp             THHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTTCTT-TTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHH
T ss_pred             HHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHHHHH-hheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHH
Confidence            556666555 47899999999999998765331 1111111 122223444 9999999998888764322    25678


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHH
Q 007863          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ  479 (587)
Q Consensus       400 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  479 (587)
                      +.+...+.+.++.+|..++..++.++..++.  ..+.+++.+..++.+....++..++.++..+.......  .+.+++.
T Consensus       356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~  431 (591)
T 2vgl_B          356 AELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIAT  431 (591)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHH
Confidence            8888888999999999999999999987643  24678899999999999999999999999998776543  4567888


Q ss_pred             HHhhhcC-CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHH
Q 007863          480 VLEMINN-PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCL  558 (587)
Q Consensus       480 l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l  558 (587)
                      +.+.+.+ .++.+|.++++++|..+.....   ...++..+.+.+.+.++.||..++.++..+....+... ...+...+
T Consensus       432 L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~-~~~i~~ll  507 (591)
T 2vgl_B          432 LCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET-QELVQQVL  507 (591)
T ss_dssp             HHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT-HHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH-HHHHHHHH
Confidence            8777754 5678999999999999886643   24667777777778899999999999999988765321 23344455


Q ss_pred             HHhcCC-CCccHHHHHHHHHHHH
Q 007863          559 VELSED-PDVDVRFFATQALQSK  580 (587)
Q Consensus       559 ~~l~~d-~~~~Vr~~a~~al~~l  580 (587)
                      ..+..| .+++||.+|...+.-+
T Consensus       508 ~~~~~d~~d~evrdRA~~y~~ll  530 (591)
T 2vgl_B          508 SLATQDSDNPDLRDRGYIYWRLL  530 (591)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHTTT
T ss_pred             HHhhhcCCChHHHHHHHHHHHHH
Confidence            555566 6889999999877655

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=1.5e-23  Score=214.43  Aligned_cols=475  Identities=15%  Similarity=0.088  Sum_probs=310.7

Q ss_pred             hcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhh
Q 007863           71 LGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFH  150 (587)
Q Consensus        71 l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~  150 (587)
                      +++|.++.++..+....++.|..++.++++.+|..|+.+|..++..-..   ...+.       .               
T Consensus         2 ~~~l~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~---~~~~~-------~---------------   56 (529)
T 1jdh_A            2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS---RHAIM-------R---------------   56 (529)
T ss_dssp             CCSCC----------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH---HHHHH-------T---------------
T ss_pred             hHHHhhcCchhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCcc---HHHHH-------h---------------
Confidence            5677888888777788889999999999999999999999998864211   00000       0               


Q ss_pred             hhccCCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHH
Q 007863          151 VAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCG  227 (587)
Q Consensus       151 ~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~  227 (587)
                                ....++.+..++. ++++.+|..++.+|..+...-..  .......+|.+..+++++++.++..++.+|.
T Consensus        57 ----------~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~  126 (529)
T 1jdh_A           57 ----------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH  126 (529)
T ss_dssp             ----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             ----------CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                      0112333333332 34677888888888876543111  1112236777888888888888888888888


Q ss_pred             HHhcccCh--h-hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCCh-HHHHHHH
Q 007863          228 ALGKLLEP--Q-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNE-AEVRIAA  300 (587)
Q Consensus       228 ~l~~~~~~--~-~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~a  300 (587)
                      .++..-+.  . ......+|.+..++.++++.+|..++.+|..++..-.   ........++.+..++++.+ ...+..+
T Consensus       127 ~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a  206 (529)
T 1jdh_A          127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT  206 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHH
Confidence            88765432  1 1235678888888888889999988888887764100   00112245677777776543 4566667


Q ss_pred             HHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHH
Q 007863          301 AGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNI  378 (587)
Q Consensus       301 ~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a  378 (587)
                      ..++..++..-...  ......++.+..++.+++..++..++.++..++...+.......++|.+..++.+.++++|..+
T Consensus       207 ~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a  286 (529)
T 1jdh_A          207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCA  286 (529)
T ss_dssp             HHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence            77777776532211  1224578888888888899999999999988876544333334678889999999999999999


Q ss_pred             HHHhHHhhhhhc--hh-hHhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHcCC
Q 007863          379 ISKLDQVNQVIG--ID-LLSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLKD  447 (587)
Q Consensus       379 ~~~l~~i~~~~~--~~-~~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d  447 (587)
                      +.+|..++..-.  .. ......+|.+..++.+  .++.+|..++..++.++...+.      .......+|.+..++.+
T Consensus       287 ~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~  366 (529)
T 1jdh_A          287 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP  366 (529)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcc
Confidence            999999875321  11 1223467788777764  4488999999999888643221      11122357788888888


Q ss_pred             Cc-hHHHHHHHHHHHHHHHHhCh--hhhhhchHHHHHhhhcCCccHHHHHHHHHHHH----------------------h
Q 007863          448 KV-YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHYLYRMTILQAISL----------------------L  502 (587)
Q Consensus       448 ~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~----------------------l  502 (587)
                      +. +.+|..++.+++.++..-..  ......++|.+.+++.++++.+|..+++++++                      +
T Consensus       367 ~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L  446 (529)
T 1jdh_A          367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL  446 (529)
T ss_dssp             TCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence            76 58999999999988742111  11235678888888887777777766655544                      3


Q ss_pred             hcccCh--HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc--hHHHHHhHHHHHHHhcCCCCccHHHHHHHHHH
Q 007863          503 APVMGS--EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSVVEKSIRPCLVELSEDPDVDVRFFATQALQ  578 (587)
Q Consensus       503 ~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~  578 (587)
                      +.....  .......++.+..++.|+++++|..++.++..+...-.  ........++.|.++..+++++||..|..++.
T Consensus       447 ~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~  526 (529)
T 1jdh_A          447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF  526 (529)
T ss_dssp             TTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             hcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHH
Confidence            321110  01234567899999999999999999999999874311  11223456789999999999999999999998


Q ss_pred             HH
Q 007863          579 SK  580 (587)
Q Consensus       579 ~l  580 (587)
                      .+
T Consensus       527 ~l  528 (529)
T 1jdh_A          527 RM  528 (529)
T ss_dssp             HH
T ss_pred             hc
Confidence            76

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.92  E-value=3.9e-23  Score=207.71  Aligned_cols=352  Identities=15%  Similarity=0.139  Sum_probs=242.4

Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC--chhHHHHHHHHHHHHhcc
Q 007863          155 SAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD--QDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~  232 (587)
                      ..+++.+..+.+.+...+.++++.+ ..++.+++.++........++.++|.+...++++  ++.+|..++.+++.+.+.
T Consensus        82 ~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~  160 (462)
T 1ibr_B           82 AIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD  160 (462)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHh
Confidence            3556677778887888888888889 9999999999987644446788999999999888  889999999999999886


Q ss_pred             cCh---hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHh
Q 007863          233 LEP---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGK  303 (587)
Q Consensus       233 ~~~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  303 (587)
                      ...   ....+.+++.+...+.|.  ++.||..|+++++.+...++.    ......+++.+...+.+.++++|..++++
T Consensus       161 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~  240 (462)
T 1ibr_B          161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQN  240 (462)
T ss_dssp             SCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             CCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            632   234566888899999988  799999999999886543221    11112357777788888899999999999


Q ss_pred             HHHHHHhhCHH--HHHH-hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHH
Q 007863          304 VTKICRILNPE--LAIQ-HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIIS  380 (587)
Q Consensus       304 l~~l~~~~~~~--~~~~-~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  380 (587)
                      |..++...+..  .+.. .+++.+...++|.++.||..++..+..++.....          ....-.+.. ..+.....
T Consensus       241 l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~----------~~~~~~~~~-~~~~~~~~  309 (462)
T 1ibr_B          241 LVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD----------LAIEASEAA-EQGRPPEH  309 (462)
T ss_dssp             HHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH----------HHHHHCCTT-CSSSCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH----------HHHhccccc-ccCCCccc
Confidence            99998876543  3345 7788887888889999999999988887643200          000000000 00000000


Q ss_pred             HhHHhhhhhchhhHhhhhHHHHHHHh-------cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHH
Q 007863          381 KLDQVNQVIGIDLLSQSLLPAIVELA-------EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR  453 (587)
Q Consensus       381 ~l~~i~~~~~~~~~~~~~~~~l~~~~-------~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  453 (587)
                      ....+.     +.+.+.++|.+...+       .+.+|.+|..+...++.++..++ +...+.++|.+...+++++|.+|
T Consensus       310 ~~~~~~-----~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r  383 (462)
T 1ibr_B          310 TSKFYA-----KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYR  383 (462)
T ss_dssp             CCCCHH-----HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHH
T ss_pred             hhHHHH-----HHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHH
Confidence            000000     001133444444433       35677788888888888887777 34556777878778888888888


Q ss_pred             HHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh----HHHHHhHHHHHHhhcC
Q 007863          454 DAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS----EITCSQLLPVVINASK  524 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~  524 (587)
                      .+|+.+++.++...+.+   .....++|.+...+.|+++.+|.+|+++++.++..++.    ..+.+.+++.++..++
T Consensus       384 ~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~  461 (462)
T 1ibr_B          384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS  461 (462)
T ss_dssp             HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence            88888888877655421   24567788888888888888888888888888776554    3577778887776654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.8e-22  Score=210.28  Aligned_cols=474  Identities=16%  Similarity=0.103  Sum_probs=323.8

Q ss_pred             cccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhc
Q 007863           74 FIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY  153 (587)
Q Consensus        74 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~  153 (587)
                      |..+.++.......++.|..++.++++.+|..|+.+|..++.........          .                   
T Consensus         2 l~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i----------~-------------------   52 (644)
T 2z6h_A            2 LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI----------M-------------------   52 (644)
T ss_dssp             ----------CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHH----------T-------------------
T ss_pred             cccccchhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHH----------H-------------------
Confidence            34455555555667888888888999999999999999998764321100          0                   


Q ss_pred             cCCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHh
Q 007863          154 PSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALG  230 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~  230 (587)
                            .....++.+...+. ++++.+|..++.+|..+...-..  .......+|.+..+++++++.+|..|+.+|..++
T Consensus        53 ------~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~  126 (644)
T 2z6h_A           53 ------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL  126 (644)
T ss_dssp             ------TCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ------hccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                  00122333333333 34678888888888776543211  1122346778888888888899999999999888


Q ss_pred             cccCh---hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCCh-HHHHHHHHHh
Q 007863          231 KLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNE-AEVRIAAAGK  303 (587)
Q Consensus       231 ~~~~~---~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~  303 (587)
                      .....   .......+|.+..++.+.+++++..++.+|..++...+.   .......++.+..++++.+ ..++..++.+
T Consensus       127 ~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~  206 (644)
T 2z6h_A          127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV  206 (644)
T ss_dssp             HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             hCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHH
Confidence            76433   112356889999999998999999998888888742100   0112346788888887654 5678888888


Q ss_pred             HHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHH
Q 007863          304 VTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (587)
Q Consensus       304 l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (587)
                      |..++..-...  ......++.+.+++.+.+..++..++.++..++...........++|.+..++.+.++.+|..++.+
T Consensus       207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a  286 (644)
T 2z6h_A          207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI  286 (644)
T ss_dssp             HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            88887532221  2223578888999999999999999999999986543333334678999999999999999999999


Q ss_pred             hHHhhhhhch--h-hHhhhhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChh------hHHHHHHHHHHHHcCCCc-
Q 007863          382 LDQVNQVIGI--D-LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG------FFDDKLGALCMQWLKDKV-  449 (587)
Q Consensus       382 l~~i~~~~~~--~-~~~~~~~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-  449 (587)
                      |..++..-..  . ......+|.+..++.+.  .+.+|..++..++.++...+..      ......+|.+..++.++. 
T Consensus       287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~  366 (644)
T 2z6h_A          287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH  366 (644)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence            9998763211  1 12235678888887653  3799999999999886432211      122346788889998875 


Q ss_pred             hHHHHHHHHHHHHHHHHhCh--hhhhhchHHHHHhhhcCCcc----------------------HHHHHHHHHHHHhhcc
Q 007863          450 YSIRDAAANNVKRLAEEFGP--DWAMQHIVPQVLEMINNPHY----------------------LYRMTILQAISLLAPV  505 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~  505 (587)
                      +.+|..++.+++.++..-..  ......++|.+.+++.++++                      .++..++.++..++..
T Consensus       367 ~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~  446 (644)
T 2z6h_A          367 WPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD  446 (644)
T ss_dssp             HHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC
Confidence            79999999999998742111  12345678888887765433                      4556667777766643


Q ss_pred             cChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          506 MGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       506 ~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ....  ......+|.+..++.+.++++|..++.+|..+...-+.  .......++.|.+++.+++++||..|..+|..+.
T Consensus       447 ~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~  526 (644)
T 2z6h_A          447 VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS  526 (644)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            2111  12346789999999999999999999999998754111  1222346788999999999999999999999886


Q ss_pred             H
Q 007863          582 Q  582 (587)
Q Consensus       582 ~  582 (587)
                      +
T Consensus       527 ~  527 (644)
T 2z6h_A          527 E  527 (644)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=1.1e-22  Score=214.80  Aligned_cols=490  Identities=14%  Similarity=0.083  Sum_probs=341.4

Q ss_pred             hHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH--H--HHHH
Q 007863           89 PPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--L--KTEL  164 (587)
Q Consensus        89 ~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~--~--~~~l  164 (587)
                      +.+.+.+.+++..+|..+++.+....+    ..+....+|.+..+..+++..+|..|+..+..+.......  .  ....
T Consensus       118 ~~lv~~L~~~~~~~r~~a~~~l~~~~~----~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~  193 (780)
T 2z6g_A          118 PTNVQRLAEPSQMLKHAVVNLINYQDD----AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM  193 (780)
T ss_dssp             --------CCSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHhhhH----HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence            334444456778888888887765422    2333556777777777777888888888888776543211  1  1346


Q ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--hhh-
Q 007863          165 RTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--QDC-  238 (587)
Q Consensus       165 ~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--~~~-  238 (587)
                      ++.+..++. +.++.+|..++.+|..+...-..  .......+|.+..+++++++.+|..|+.+|..++...+.  ... 
T Consensus       194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~  273 (780)
T 2z6g_A          194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR  273 (780)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            666666665 45899999999999997653211  112234788899999999999999999999999876443  112 


Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChH-HHHHHHHHhHHHHHHhhCHH
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEA-EVRIAAAGKVTKICRILNPE  314 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~  314 (587)
                      ....++.+..++.+.++.++..++.++..++....   ........++.+..++++.+. .++..++.++..++..-...
T Consensus       274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~  353 (780)
T 2z6g_A          274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK  353 (780)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence            35689999999999999999999999987763100   001123467888888877654 45567788888887532221


Q ss_pred             --HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh
Q 007863          315 --LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       315 --~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  392 (587)
                        .....+++.+..++.+.+..++..++.++..++...........++|.+..++.+.++.+|..++.+|..++..-...
T Consensus       354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~  433 (780)
T 2z6g_A          354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN  433 (780)
T ss_dssp             HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence              223457899999999999999999999999988655433233568899999999999999999999999987642111


Q ss_pred             ---hHhhhhHHHHHHHhcC-CCc-HHHHHHHHHHHHHHHhhCh------hhHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Q 007863          393 ---LLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV------GFFDDKLGALCMQWLKDKV-YSIRDAAANNV  460 (587)
Q Consensus       393 ---~~~~~~~~~l~~~~~~-~~~-~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l  460 (587)
                         ......+|.+..++.+ .++ .+|..++..++.++...+.      .......+|.+..++.+++ +.+|..|+.+|
T Consensus       434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL  513 (780)
T 2z6g_A          434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI  513 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence               1123567888888765 444 8999999999988643221      1112345788888888776 49999999999


Q ss_pred             HHHHHHhCh--hhhhhchHHHHHhhhcCCcc----------------------HHHHHHHHHHHHhhcccChH--HHHHh
Q 007863          461 KRLAEEFGP--DWAMQHIVPQVLEMINNPHY----------------------LYRMTILQAISLLAPVMGSE--ITCSQ  514 (587)
Q Consensus       461 ~~l~~~~~~--~~~~~~~~~~l~~~l~~~~~----------------------~~r~~a~~~l~~l~~~~~~~--~~~~~  514 (587)
                      +.++.....  ......++|.+.+++.+.++                      .++..++.+|..++......  .....
T Consensus       514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~  593 (780)
T 2z6g_A          514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLN  593 (780)
T ss_dssp             HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred             HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCC
Confidence            999842111  11235678888887765433                      35667777777776421111  11356


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .+|.+..++.++++++|..++.+|..+...-...  ......++.|.+++.+++++||..|..||..+..
T Consensus       594 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          594 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            7899999999999999999999999987431111  2223468889999999999999999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.92  E-value=6e-21  Score=195.90  Aligned_cols=570  Identities=12%  Similarity=0.077  Sum_probs=387.5

Q ss_pred             HHHHHHhcC-ccHHHHHHHhhcHHHHHHHhChhhhhh---hh-cccccccc-CCchHHHHHHHHHhcccccCc-------
Q 007863           12 AVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRK---EL-IPFLSENN-DDDDEVLLAMAEELGVFIPYV-------   78 (587)
Q Consensus        12 ~~l~~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~---~l-~p~l~~~~-~~~~~v~~~~~~~l~~~~~~~-------   78 (587)
                      ..+.+-+.+ .|++....|++.|..+++.- ..++..   ++ +|.+.+.+ .+++++-.++..++..+..-+       
T Consensus        52 ~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (810)
T 3now_A           52 AKVASLTKVEKDQDIYVNMVHLVAALCENS-VERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKP  130 (810)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSST
T ss_pred             HHHHHHHhccCchhHHHHHHHHHHHHHhcc-HHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccc
Confidence            344445555 78999999999999987532 123321   11 34444433 344555444444444332111       


Q ss_pred             -CCcc------h---HhhhhhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcC---hhhHh-hhhHHHHHHhhcC-C----
Q 007863           79 -GGLE------Y---ANVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMR---EQDVV-EHFIPLVKRLAAG-E----  137 (587)
Q Consensus        79 -~~~~------~---~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~---~~~~~-~~ll~~~~~l~~~-~----  137 (587)
                       .+.+      +   ...++..|...+.+.  ....|..+++.+...+.+-.   +..+. ..-+.-+.+.... +    
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~  210 (810)
T 3now_A          131 DSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKY  210 (810)
T ss_dssp             TCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCC
T ss_pred             ccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccc
Confidence             1111      1   233333444444444  57889999988887663322   11111 1112222222211 1    


Q ss_pred             ------CCcchhhHHhhhhhhccCCC-----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhh-HHH
Q 007863          138 ------WFTARVSSCGLFHVAYPSAP-----EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHL-KSE  202 (587)
Q Consensus       138 ------~~~~r~~a~~l~~~~~~~~~-----~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~-~~~  202 (587)
                            ....|..+...+..+++...     +...+.+-.++...+..++..-+..++.++..+.....+   ..+ .+.
T Consensus       211 ~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G  290 (810)
T 3now_A          211 ESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREG  290 (810)
T ss_dssp             SSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTT
T ss_pred             cccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccc
Confidence                  23457777777777777765     234455556666666677777777788888887764332   122 345


Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC----Cc
Q 007863          203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT  277 (587)
Q Consensus       203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~  277 (587)
                      .+|.+..+++++++.++..|+.+++..+..-.. +...+.-.|.+..++++++..+|..|+.+|.+++...+.+    ..
T Consensus       291 ~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~  370 (810)
T 3now_A          291 ILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPF  370 (810)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSS
T ss_pred             hHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccch
Confidence            778888999999999999999999997765222 2222233499999999888999999999999887543211    11


Q ss_pred             ----ccchHHHHHHhcCCC--hHHHHHHHHHhHHHHHHhhCHH-HHH--HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhh
Q 007863          278 ----RSDVVPAYVRLLRDN--EAEVRIAAAGKVTKICRILNPE-LAI--QHILPCVKELSSDSSQHVRSALATVIMGMAP  348 (587)
Q Consensus       278 ----~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~-~~~--~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~  348 (587)
                          ...+++.+.+++.++  ++++|..|+.+|..++...... .+.  ..++|.+..++++++..++..++.+++.++.
T Consensus       371 ~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~  450 (810)
T 3now_A          371 GDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCN  450 (810)
T ss_dssp             TTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred             hhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence                124688888888777  7899999999999997642221 121  3578899999988888999999999999986


Q ss_pred             hhc-----------------------------------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh-
Q 007863          349 ILG-----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID-  392 (587)
Q Consensus       349 ~~~-----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~-  392 (587)
                      ...                                   ........+|.+..+++++++.+|..++++|..++..-... 
T Consensus       451 ~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~  530 (810)
T 3now_A          451 AYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRG  530 (810)
T ss_dssp             CSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            321                                   01112347899999999999999999999999998542211 


Q ss_pred             -hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHH
Q 007863          393 -LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLKDK-VYSIRDAAANNVKRLAE  465 (587)
Q Consensus       393 -~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~  465 (587)
                       ......+|.+..++.+.+...|..+..++..++....++..     ....+|.+..++..+ +...+..|+.+|..++.
T Consensus       531 ~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~  610 (810)
T 3now_A          531 KVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS  610 (810)
T ss_dssp             HHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence             12346789999999999999999999999998865444321     123577888888754 44556789999999885


Q ss_pred             HhC---hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh-HHHH--HhHHHHHHhhcCCCCccHHHHHHHHHH
Q 007863          466 EFG---PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-EITC--SQLLPVVINASKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       466 ~~~---~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~  539 (587)
                      .-.   ........+|.+..++.+++..+|..|++++++++..-.. ..+.  ...++.++.++..++..+|..|+.+|+
T Consensus       611 ~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa  690 (810)
T 3now_A          611 MNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA  690 (810)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            311   1123356789999999999999999999999999863211 1122  357899999999999999999999999


Q ss_pred             HHHhhhch---HHHH-HhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          540 SLIPIVDQ---SVVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       540 ~l~~~~~~---~~~~-~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .+....+.   ..+. ...+|.|..++.+.+.++|..|..++..+..
T Consensus       691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          691 IITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            99873221   2333 4688999999999999999999999998865

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.92  E-value=1e-21  Score=201.59  Aligned_cols=571  Identities=15%  Similarity=0.129  Sum_probs=398.1

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC---------hh-----hhhhhhcccc---ccc-cC--CchHHHHHHHH
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALG---------EE-----RTRKELIPFL---SEN-ND--DDDEVLLAMAE   69 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~---------~~-----~~~~~l~p~l---~~~-~~--~~~~v~~~~~~   69 (587)
                      .++.++.-|.+++++.-.++...+..+...+.         |+     ....++-.++   ... .+  -....|..+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~  172 (810)
T 3now_A           93 GVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIE  172 (810)
T ss_dssp             CHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHH
Confidence            35678888889888887777766665544432         11     0111222222   221 12  24466777777


Q ss_pred             HhcccccCcCC--cchH---hhhhhHHHhhhcCc----------hhHHHHHHHHHHHHHHhhcCh----hhHhhhhHHHH
Q 007863           70 ELGVFIPYVGG--LEYA---NVLLPPLETLCTVE----------ETCVRDKAVESLCRIGSQMRE----QDVVEHFIPLV  130 (587)
Q Consensus        70 ~l~~~~~~~~~--~~~~---~~l~~~l~~l~~~~----------~~~vr~~a~~~l~~l~~~~~~----~~~~~~ll~~~  130 (587)
                      .+-+-.++-..  ....   ..+..+|.-....+          ....|..+.-++.++.+.+..    +.+...+-.|+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  252 (810)
T 3now_A          173 LITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYI  252 (810)
T ss_dssp             HHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            77665554321  1110   11111221111111          358999999999999998874    44555566677


Q ss_pred             HHhhcCCCCcchhhHHhhhhhhccCCCHH-----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-hhhHHHHH
Q 007863          131 KRLAAGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-AHLKSEIM  204 (587)
Q Consensus       131 ~~l~~~~~~~~r~~a~~l~~~~~~~~~~~-----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~  204 (587)
                      ...........+..++..++.+++..++.     ..+..++.+..++.++++.++..|+.+++..+..-.. ..+...-.
T Consensus       253 ~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv  332 (810)
T 3now_A          253 KDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV  332 (810)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH
T ss_pred             HHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc
Confidence            66665555555666777777777766543     1346788999999999999999999999997664222 22222334


Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccC-----h---hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHHHHHHhCC
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLE-----P---QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP  274 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-----~---~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~  274 (587)
                      |.+..+++++++.+|..|..+|.+++....     +   +.-...+++.+.+++.++  +..+|..|+++|..+......
T Consensus       333 ~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v  412 (810)
T 3now_A          333 DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC  412 (810)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH
Confidence            899999998888999999999999875322     1   112346788888888877  889999999999988642111


Q ss_pred             --CCc-ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-----------------------------------HHHH
Q 007863          275 --EPT-RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-----------------------------------PELA  316 (587)
Q Consensus       275 --~~~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-----------------------------------~~~~  316 (587)
                        ... ...++|.++.+++..+..++..++.+|+.+.....                                   ....
T Consensus       413 k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vv  492 (810)
T 3now_A          413 KEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLA  492 (810)
T ss_dssp             HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHH
Confidence              111 23588999999998889999999999999987431                                   0011


Q ss_pred             HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhH
Q 007863          317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  394 (587)
Q Consensus       317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~  394 (587)
                      ....+|.+..+++++++.+|..++++++.++..-..  .......+|.+..++.+.++.+|..|+++|..++....++..
T Consensus       493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~  572 (810)
T 3now_A          493 NEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS  572 (810)
T ss_dssp             HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhh
Confidence            235789999999999999999999999999853221  112345789999999999999999999999998865433321


Q ss_pred             -----hhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863          395 -----SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       395 -----~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                           ....+|.+..++... +...+..++.++..++..-.   ........+|.+..++.+.+..||..|+.+++.++.
T Consensus       573 ~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~  652 (810)
T 3now_A          573 FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM  652 (810)
T ss_dssp             TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT
T ss_pred             hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence                 124788888888754 33445678888877765311   112223457888888889999999999999999975


Q ss_pred             HhChhh---hh--hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HHHH--HhHHHHHHhhcCCCCccHHHHHHH
Q 007863          466 EFGPDW---AM--QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITC--SQLLPVVINASKDRVPNIKFNVAK  536 (587)
Q Consensus       466 ~~~~~~---~~--~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~--~~~l~~l~~~l~d~~~~vR~~a~~  536 (587)
                        +.+.   +.  ...++.+..++..++..+|..|++++++++.....  ..+.  ...+|.+..++.+++..+|..|+.
T Consensus       653 --~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~  730 (810)
T 3now_A          653 --SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV  730 (810)
T ss_dssp             --SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             --ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence              2221   22  35789999999999999999999999999874221  1222  468999999999999999999999


Q ss_pred             HHHHHHhhhc---hHHHHHhHHHHHHHhcCCC---CccHHHHHHHHHHHHHH
Q 007863          537 VLQSLIPIVD---QSVVEKSIRPCLVELSEDP---DVDVRFFATQALQSKDQ  582 (587)
Q Consensus       537 ~l~~l~~~~~---~~~~~~~i~~~l~~l~~d~---~~~Vr~~a~~al~~l~~  582 (587)
                      ++.++...-+   .......+++.|..++.++   +.+|+..|.+||..+.+
T Consensus       731 aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          731 IILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            9999976321   1234456789999987655   67899999999998864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=1.7e-22  Score=213.37  Aligned_cols=533  Identities=11%  Similarity=0.029  Sum_probs=349.4

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcc---hHhhh
Q 007863           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE---YANVL   87 (587)
Q Consensus        11 ~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~---~~~~l   87 (587)
                      +..+++.|.+++..+|..+++.+.......-.....+.|+.++.   +++..+|..++.+|++++.......   .....
T Consensus       117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~---~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~  193 (780)
T 2z6g_A          117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLN---DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM  193 (780)
T ss_dssp             ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHC---CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence            57899999999999999888877654322111222333444333   5677899999999998865321000   01234


Q ss_pred             hhHHHhhhc-CchhHHHHHHHHHHHHHHhhcCh--hhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH---H-
Q 007863           88 LPPLETLCT-VEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---L-  160 (587)
Q Consensus        88 ~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~--~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~---~-  160 (587)
                      ++.|..++. ++++.+|..|+.+|..++..-..  .-.....+|.+.++..+++..++..|+..+..+....+..   . 
T Consensus       194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~  273 (780)
T 2z6g_A          194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR  273 (780)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence            555555554 45899999999999998764221  1123457888888888888888888888888776543221   2 


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCch-hHHHHHHHHHHHHhcccCh-
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEP-  235 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~-  235 (587)
                      ....++.+..++.++++.++..++.+|..++.....   .......++.+..++.+.++ ..+..+..++..++..-.. 
T Consensus       274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~  353 (780)
T 2z6g_A          274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK  353 (780)
T ss_dssp             HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHH
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHH
Confidence            346788999999999999999999999877642111   11222346666677776654 4556777888877753211 


Q ss_pred             -hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 007863          236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE  314 (587)
Q Consensus       236 -~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  314 (587)
                       .......++.+..++.+.+..++..++.+|..++...........+++.+.+++++.++++|..|+.+|+.++..-...
T Consensus       354 ~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~  433 (780)
T 2z6g_A          354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN  433 (780)
T ss_dssp             HHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence             1223457899999999999999999999999998765443344568999999999999999999999999997642111


Q ss_pred             ---HHHHhHHHHHhHhcCCC-c-HHHHHHHHHHHHhhhhhhch------HHHHHhHHHHHHHhcCCCCh-HHHHHHHHHh
Q 007863          315 ---LAIQHILPCVKELSSDS-S-QHVRSALATVIMGMAPILGK------DATIEQLLPIFLSLLKDEFP-DVRLNIISKL  382 (587)
Q Consensus       315 ---~~~~~~~~~l~~~~~d~-~-~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l  382 (587)
                         ......++.+.+++.+. + ..+|..++.+|+.++...+.      .......+|.+..++.+.+. .+|..++.+|
T Consensus       434 ~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL  513 (780)
T 2z6g_A          434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI  513 (780)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHH
Confidence               11134677777777552 2 48999999999999754322      11234568899999988764 9999999999


Q ss_pred             HHhhhhhchh--hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc-CCCchHHHHHHHHH
Q 007863          383 DQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-KDKVYSIRDAAANN  459 (587)
Q Consensus       383 ~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~  459 (587)
                      +.++..-...  .....++|.+..++.+.++.+|..+...++.       .       +    +. .....+++..++.+
T Consensus       514 ~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~n-------q-------~----~~~~~~~~~v~~~a~~a  575 (780)
T 2z6g_A          514 RNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ-------Q-------Q----FVEGVRMEEIVEACTGA  575 (780)
T ss_dssp             HHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC--------------------C----CSTTCCHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcccc-------c-------h----hhcccChHHHHHHHHHH
Confidence            9998532111  1123567888888877777777655443221       0       0    00 11335688888888


Q ss_pred             HHHHHHHhChh--hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH-H-HHhHHHHHHhhcCCCCccHHHHHH
Q 007863          460 VKRLAEEFGPD--WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI-T-CSQLLPVVINASKDRVPNIKFNVA  535 (587)
Q Consensus       460 l~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~-~-~~~~l~~l~~~l~d~~~~vR~~a~  535 (587)
                      |+.++..-...  ......+|.+.+++.+++..+|..++.++..++..-.... + ....++.+..++.++++.||..|+
T Consensus       576 L~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~  655 (780)
T 2z6g_A          576 LHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA  655 (780)
T ss_dssp             HHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred             HHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence            88876321111  1236689999999999999999999999999874311111 1 234678899999999999999999


Q ss_pred             HHHHHHHhhhchHHHHHhHHHHHHHhcCC
Q 007863          536 KVLQSLIPIVDQSVVEKSIRPCLVELSED  564 (587)
Q Consensus       536 ~~l~~l~~~~~~~~~~~~i~~~l~~l~~d  564 (587)
                      .+|..+...-+.......-.+.+..+..+
T Consensus       656 ~aL~~l~~~~~~~~~~~l~~~ll~~l~~~  684 (780)
T 2z6g_A          656 AVLFRMSEDKPQDYKKRLSVELTSSLFRT  684 (780)
T ss_dssp             HHHHHHHTTSCTTHHHHHHHHHHHHC---
T ss_pred             HHHHHHHcCChHhhhccccHHHHHHHHhC
Confidence            99999987644222111133444554433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.92  E-value=8.3e-23  Score=209.58  Aligned_cols=468  Identities=14%  Similarity=0.122  Sum_probs=331.3

Q ss_pred             HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863           90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR  169 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~  169 (587)
                      -+.+.+.+++...|..++.-+..+. ..|.+ . ..+.+.+.++..++++..|..++..+..+.+.. ++....+.+.+.
T Consensus        17 ~i~~~L~~~~~~~k~~~~~kli~~~-~~G~d-~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e~~~l~~n~l~   92 (591)
T 2vgl_B           17 ELKAELNNEKKEKRKEAVKKVIAAM-TVGKD-V-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PDMAIMAVNSFV   92 (591)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHH-HTTCC-C-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HHHHHTTHHHHG
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHH-HCCCC-h-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-chHHHHHHHHHH
Confidence            3455556666666666555444322 23332 1 234555666777777777777665555543322 334444567777


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHh
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF  249 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  249 (587)
                      +.++|+++.+|..|+.+++.+.    .+...+.+.|.+.+++.|+++.||+.|+.++..+....++......+++.+.++
T Consensus        93 kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~l  168 (591)
T 2vgl_B           93 KDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDL  168 (591)
T ss_dssp             GGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHH
Confidence            8889999999999998888774    356778889999999999999999999999999998654422223688999999


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhCCCCcc---cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhH
Q 007863          250 SQDKSWRVRYMVANQLYELCEAVGPEPTR---SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKE  326 (587)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  326 (587)
                      +.|+++.||..|+.+|+.++..-+.....   ...++.+...+.+.++..+...++.++.++..  .+.....+++.+..
T Consensus       169 L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~--~~~~~~~~l~~l~~  246 (591)
T 2vgl_B          169 IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK--DDREAQSICERVTP  246 (591)
T ss_dssp             TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC--SHHHHHHHHHHHTT
T ss_pred             hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC--ChHHHHHHHHHHHH
Confidence            99999999999999999987653322011   12345555556666777777777766555421  12234678899999


Q ss_pred             hcCCCcHHHHHHHHHHHHhhhhhh--ch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863          327 LSSDSSQHVRSALATVIMGMAPIL--GK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       327 ~~~d~~~~vr~~a~~~l~~l~~~~--~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~  401 (587)
                      ++++.++.|+..+++++..+....  ++   ......+.+.+..++ ++++++|..++.++..+....+ +.+.+. +..
T Consensus       247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~-~~~  323 (591)
T 2vgl_B          247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQE-IKV  323 (591)
T ss_dssp             CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTC-TTT
T ss_pred             HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHH-HHh
Confidence            999999999999999999987543  11   122345666666655 4789999999999999986532 211111 111


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHH
Q 007863          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVL  481 (587)
Q Consensus       402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~  481 (587)
                      +.... ++++.+|..+++.+..++..-+    .+.+++.+..++.+.++++|..++.+++.++..+...  .+.+++.+.
T Consensus       324 ~~~~~-~d~~~Ir~~al~~L~~l~~~~n----v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll  396 (591)
T 2vgl_B          324 FFVKY-NDPIYVKLEKLDIMIRLASQAN----IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLL  396 (591)
T ss_dssp             TSCCT-TSCHHHHHHHHHHHHHTCCSST----HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHH
T ss_pred             heecc-CChHHHHHHHHHHHHHHCChhh----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHH
Confidence            21122 3449999999988877654322    3457778888999999999999999999999876543  467889999


Q ss_pred             hhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHH
Q 007863          482 EMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE  560 (587)
Q Consensus       482 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~  560 (587)
                      +++.+....++..++.++..+....+..  .+.+++.+...+. +..+.+|..+++++|+.+......   ..+++.+.+
T Consensus       397 ~ll~~~~~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~---~~~l~~l~~  471 (591)
T 2vgl_B          397 DLIQTKVNYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNA---DELLESFLE  471 (591)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTH---HHHHHHHST
T ss_pred             HHHcccchHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCH---HHHHHHHHH
Confidence            9999988888888898998887654432  3456777777776 467899999999999998776432   355666666


Q ss_pred             hcCCCCccHHHHHHHHHHHHHH
Q 007863          561 LSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       561 l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ...+.++.||..+..|+.++..
T Consensus       472 ~~~~~~~~vr~~~l~a~~Kl~~  493 (591)
T 2vgl_B          472 GFHDESTQVQLTLLTAIVKLFL  493 (591)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHT
T ss_pred             hhccCCHHHHHHHHHHHHHHHh
Confidence            5667788999999999988764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=3.2e-22  Score=203.83  Aligned_cols=378  Identities=10%  Similarity=0.059  Sum_probs=281.9

Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhC---CC
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---PE  275 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~---~~  275 (587)
                      ++.+...++++++.+|..|+..|..+......    ......++|.+..++.++ ++.+|..|+.+|+.++....   ..
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            44555566666777777777777777554211    122346788888888886 88999999999888865210   01


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh-c
Q 007863          276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL-G  351 (587)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~  351 (587)
                      ......+|.+..+++++++.+|..|+.+|+.++.....   ......+++.+..++.+.++.+|..++.+++.++..- +
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence            11235788888888888899999999999998863211   1223457888889898889999999999999988543 1


Q ss_pred             --hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--h-hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863          352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--~-~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  426 (587)
                        .......++|.+..++.+.++.+|..++.+|..++.....  . .....++|.+..++.++++.+|..++..++.++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence              2334567889999999999999999999999998854221  1 1223678999999999999999999999988874


Q ss_pred             hhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhcCCccHHHHHHHHHHH
Q 007863          427 QLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAIS  500 (587)
Q Consensus       427 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~  500 (587)
                      ..+   ...+...++|.+..++.++++.+|..|+.+|+.++.....   ..+...++|.+..++.++++.+|..++++++
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~  408 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  408 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            321   1112235788999999999999999999999998752111   1123578999999999899999999999999


Q ss_pred             HhhcccCh--HH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---------HH-----HHhHHHHHHH
Q 007863          501 LLAPVMGS--EI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VV-----EKSIRPCLVE  560 (587)
Q Consensus       501 ~l~~~~~~--~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---------~~-----~~~i~~~l~~  560 (587)
                      +++...+.  +.    ....++|.+..++.++++.+|..++.+|..++...+..         .+     ....++.|..
T Consensus       409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~  488 (530)
T 1wa5_B          409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  488 (530)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence            99876443  21    23458899999999999999999999999998764321         11     1235788889


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 007863          561 LSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       561 l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +..+++++|+..|..++..+-
T Consensus       489 L~~~~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          489 CQQNENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHS
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            999999999999999987754

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=3.5e-22  Score=199.91  Aligned_cols=378  Identities=13%  Similarity=0.078  Sum_probs=276.6

Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhccc--Ch--hhhhh-chHHHHHHhcCCC-chHHHHHHHHHHHHHHHHhC---C
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLL--EP--QDCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---P  274 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~--~~--~~~~~-~l~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~---~  274 (587)
                      ++.+.+.++++++.+|..|+..+..+....  ++  ..... .++|.+.+++.+. ++.+|..++.+|..++....   .
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            445555556666667777777776654311  11  11223 6788888888877 88899999998888874210   0


Q ss_pred             CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhh
Q 007863          275 EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPIL  350 (587)
Q Consensus       275 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~  350 (587)
                      .......+|.+.++++++++.+|..|+.+|+.++.....  . .....+++.+.+++.+ .++.+|..++.+++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            011245889999999999999999999999998864211  1 1224578888888874 78999999999999988543


Q ss_pred             -c--hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 007863          351 -G--KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  424 (587)
Q Consensus       351 -~--~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l  424 (587)
                       +  .......++|.+..++.+.++.+|..+++++..++.....   ......++|.+..++.++++.+|..++..++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence             1  1223367889999999999999999999999998864321   112245789999999999999999999999888


Q ss_pred             HHhhChh---hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhcCCccHHHHHHHHH
Q 007863          425 ASQLGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQA  498 (587)
Q Consensus       425 ~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~a~~~  498 (587)
                      +...+..   .....++|.+..++.++++.+|..|+.+|+.++.....   ......++|.+.+++.+++..+|..++++
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            7532211   11224788899999999999999999999998752111   11235789999999999999999999999


Q ss_pred             HHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---------HHHHhH-----HHHHHH
Q 007863          499 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSI-----RPCLVE  560 (587)
Q Consensus       499 l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---------~~~~~i-----~~~l~~  560 (587)
                      +++++....++.    ....++|.+..++.++++.+|..++.+|..+....+..         .+...+     ++.|..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            999987543332    23468999999999999999999999999998754321         222333     677888


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 007863          561 LSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       561 l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +..+++.+|+..|..++..+-
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            889999999999999988764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.91  E-value=4.7e-22  Score=198.99  Aligned_cols=379  Identities=11%  Similarity=0.068  Sum_probs=287.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---h-hhHH-HHHHHHHHhcccC-chhHHHHHHHHHHHHhcccCh---
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---A-HLKS-EIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP---  235 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~-~~~~-~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---  235 (587)
                      ++.+...++++++.+|..++..|..+......   . .... .++|.+.++++++ ++.+|..|+.++..++...++   
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            56666677888999999999999998652111   1 1222 5788888888888 789999999999998874322   


Q ss_pred             hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhh
Q 007863          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~  311 (587)
                      ......++|.+.++++++++.+|..|+.+|+.++.....   ......+++.+..++++ .++.+|..++.+|+.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            122356899999999999999999999999999853110   01123578999999985 78999999999999998643


Q ss_pred             CH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863          312 NP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (587)
Q Consensus       312 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  385 (587)
                      ++   ......++|.+.+++.+.++.+|..++.++..++.....   ......++|.+..++.++++.+|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            11   122367889999999999999999999999999864321   112345789999999999999999999999999


Q ss_pred             hhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 007863          386 NQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANN  459 (587)
Q Consensus       386 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +...+..   .....++|.+..++.++++.+|..++..++.++.....   ......++|.+...+.++++.||..|+.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            8643221   12236889999999999999999999999988752111   11224678889999999999999999999


Q ss_pred             HHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---------HHHHhH-----HHHHHh
Q 007863          460 VKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---------ITCSQL-----LPVVIN  521 (587)
Q Consensus       460 l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~~-----l~~l~~  521 (587)
                      |+.++.....+.    ....++|.+.+++.++++.+|..++.++..+....+..         .+...+     ++.+..
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~  421 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEF  421 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHH
Confidence            999987544332    23568999999999999999999999999998643221         122223     456667


Q ss_pred             hcCCCCccHHHHHHHHHHHHHh
Q 007863          522 ASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~l~~  543 (587)
                      +..++++.+|..+..++..+..
T Consensus       422 l~~~~~~~v~~~a~~~l~~~~~  443 (450)
T 2jdq_A          422 LQSHENQEIYQKAFDLIEHYFG  443 (450)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHCC
Confidence            7777788888888888877753

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.90  E-value=2.2e-21  Score=197.66  Aligned_cols=380  Identities=11%  Similarity=0.086  Sum_probs=280.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccCh---h
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLEP---Q  236 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      ++.+...+.++++.+|..++..|..+......+    .....++|.+..++.++ ++.+|..|+.+|..++...+.   .
T Consensus        89 i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  168 (530)
T 1wa5_B           89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV  168 (530)
T ss_dssp             HHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            455556667778888888888888875432111    12234678888888886 788999999999888764322   1


Q ss_pred             hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  313 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                      ......+|.+..++.++++.+|..|+.+|+.++....   ........++.+..++.+.++.+|..++.+|..++..-++
T Consensus       169 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~  248 (530)
T 1wa5_B          169 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP  248 (530)
T ss_dssp             HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCC
Confidence            1235678888888888899999999999998874210   0111235788888999888899999999999999864311


Q ss_pred             ---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          314 ---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       314 ---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                         ......++|.+..++.+.++.+|..++.+++.++...+.   ......++|.+..++.+.++.+|..++.+|+.++.
T Consensus       249 ~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~  328 (530)
T 1wa5_B          249 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT  328 (530)
T ss_dssp             CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence               233467888899999999999999999999988754321   11223678889999999999999999999999875


Q ss_pred             hhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863          388 VIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVK  461 (587)
Q Consensus       388 ~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      .-+.   ..+...++|.+..++.++++.+|..++..++.++.....   ..+...++|.+..++.++++.+|..|+.+|+
T Consensus       329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~  408 (530)
T 1wa5_B          329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  408 (530)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3221   112246888999999999999999999999888752111   1122346788888888899999999999999


Q ss_pred             HHHHHhCh--hh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---------HHH-----HHhHHHHHHh
Q 007863          462 RLAEEFGP--DW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---------EIT-----CSQLLPVVIN  521 (587)
Q Consensus       462 ~l~~~~~~--~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~-----~~~~l~~l~~  521 (587)
                      .++...+.  +.    ....++|.+..++.+++..+|..++.++..+......         ..+     ....++.+..
T Consensus       409 ~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~  488 (530)
T 1wa5_B          409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  488 (530)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHH
Confidence            99886443  22    3356899999999999999999999999999864322         111     1235778888


Q ss_pred             hcCCCCccHHHHHHHHHHHHHhh
Q 007863          522 ASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                      +..++++.++..|..+|..++..
T Consensus       489 L~~~~~~~v~~~a~~il~~~~~~  511 (530)
T 1wa5_B          489 CQQNENDKIYEKAYKIIETYFGE  511 (530)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCc
Confidence            89999999999999999888764

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.89  E-value=7.8e-20  Score=188.03  Aligned_cols=530  Identities=11%  Similarity=0.024  Sum_probs=361.4

Q ss_pred             ccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhh
Q 007863            9 YPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANV   86 (587)
Q Consensus         9 ~~~~~l~~~l~s~d--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~   86 (587)
                      ..+..++..+.+..  .+.|....+.+..+...+...               +...-+..+.+.+.-+.  .| .+ .+.
T Consensus        10 ~~l~~~i~~ir~~~~~~~e~~~i~~e~~~ir~~l~~~---------------~~~~k~~~l~kli~~~~--~G-~d-~~~   70 (618)
T 1w63_A           10 IRLRELIRTIRTARTQAEEREMIQKECAAIRSSFREE---------------DNTYRCRNVAKLLYMHM--LG-YP-AHF   70 (618)
T ss_dssp             CCHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHTTT---------------CTTTHHHHHHHHHHHHH--TT-CC-CGG
T ss_pred             ccHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHhhCC---------------CHHHHHHHHHHHHHHHH--cC-CC-Ccc
Confidence            45888888888653  345544444454444333211               11122223333333221  13 22 233


Q ss_pred             hhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHH
Q 007863           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT  166 (587)
Q Consensus        87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~  166 (587)
                      ...-+.+++.+++...|+...-.+..+++.- + +........+.+-..+.++.+|..|+..++.+.   +++..+.+.+
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~-e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~  145 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER-Q-DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDLAG  145 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-H-HHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-c-HHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHH
Confidence            4444556667889888888877777776542 2 222234455555567788999999999888875   3667788899


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhhhhchHHH
Q 007863          167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHILPV  245 (587)
Q Consensus       167 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~  245 (587)
                      .+..++.|+++.||+.|+.+++.+....+  ...+.+++.+..++.|.++.|+..|+.++..++..-+. ......++|.
T Consensus       146 ~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~  223 (618)
T 1w63_A          146 EVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQ  223 (618)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            99999999999999999999999998654  34456778888899999999999999999998765322 1122344554


Q ss_pred             HHHhcC---------------CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc------CCChHHHHHHHHHhH
Q 007863          246 IVNFSQ---------------DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL------RDNEAEVRIAAAGKV  304 (587)
Q Consensus       246 l~~~~~---------------d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l  304 (587)
                      +...+.               ..++..+...+++|+.++..-  ......+.+.+..++      ++.+..|...|++++
T Consensus       224 l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i  301 (618)
T 1w63_A          224 LVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND--DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTI  301 (618)
T ss_dssp             HHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC--HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            444332               247788888888888776421  011224555555543      334678888888888


Q ss_pred             HHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863          305 TKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       305 ~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      ..+..   .........+.+..++.+++..+|..++.+++.++...+  .......+.+..++.|++..||..++..+..
T Consensus       302 ~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~  376 (618)
T 1w63_A          302 MDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFA  376 (618)
T ss_dssp             HHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHH
T ss_pred             HhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence            77532   122224566777888888899999999999999986532  2334456678888999999999999999999


Q ss_pred             hhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863          385 VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  464 (587)
Q Consensus       385 i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      ++..-..    +.+++.+...+.+.+..+|..++..++.++..+.+.  ....++.+++++++....++..++..+..+.
T Consensus       377 l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~--~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii  450 (618)
T 1w63_A          377 LVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPS--KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLI  450 (618)
T ss_dssp             HCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHHHHHHHTGGGSCSSHHHHHHHHH
T ss_pred             HcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc--HHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            8764222    456777777778889999999999999999876543  3556788888888877778888888888888


Q ss_pred             HHhChhhhhhchHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChH---------HHHHhHHHHHHhhcC--CCCccHH
Q 007863          465 EEFGPDWAMQHIVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE---------ITCSQLLPVVINASK--DRVPNIK  531 (587)
Q Consensus       465 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---------~~~~~~l~~l~~~l~--d~~~~vR  531 (587)
                      .....  ....+++.+.+.+.+  ........+++++|..+..+...         .....+.+.+..+++  ..++.+|
T Consensus       451 ~~~p~--l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr  528 (618)
T 1w63_A          451 TNSVE--MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTR  528 (618)
T ss_dssp             HHSCS--THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHH
T ss_pred             hcChh--HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHH
Confidence            75442  234566666666553  23444557899999998744210         011233444444443  5689999


Q ss_pred             HHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          532 FNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       532 ~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ..++.++..++...+.  ..+.+...|..+..|.|.+||.+|...+.-+.
T Consensus       529 ~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~  576 (618)
T 1w63_A          529 GYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK  576 (618)
T ss_dssp             HHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence            9999999999877643  24556667777889999999999999887764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.89  E-value=1.6e-20  Score=191.35  Aligned_cols=377  Identities=12%  Similarity=0.090  Sum_probs=277.7

Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhcccC-h---hhhhhchHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHhCC---C
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---E  275 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~-~---~~~~~~l~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~  275 (587)
                      +|.+.+.+.++++.+|..|+..+..+..... +   ......++|.+..++.+++ +.+|..|+.+|+.++.....   .
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            4555556666677777777777777755433 1   2234567888888888776 88888888888888752100   0


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhc-CCCcHHHHHHHHHHHHhhhhhhc
Q 007863          276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELS-SDSSQHVRSALATVIMGMAPILG  351 (587)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~  351 (587)
                      ......+|.+..+++++++.+|..|+.+|+.++.....   ......+++.+..++ .+.++.++..++.++..++...+
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            11225788889999988899999999999998763211   112234677888888 67789999999999998876532


Q ss_pred             --hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863          352 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       352 --~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  426 (587)
                        .......++|.+..++.+.++.++..++.+|..++......   .....++|.+..++.++++.+|..++..++.++.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence              22344678899999999999999999999999988543221   1223578899999999999999999999988875


Q ss_pred             hhCh---hhHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhChh----hhhhchHHHHHhhhcCCccHHHHHHHHH
Q 007863          427 QLGV---GFFDDKLGALCMQWLKDK-VYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQA  498 (587)
Q Consensus       427 ~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~~a~~~  498 (587)
                      ....   ..+...++|.+..++.++ ++.+|..|+.+|+.++.. ..+    .+...++|.+..++.+++..+|..++.+
T Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            3211   111234688888999888 999999999999999852 221    1235788999999988899999999999


Q ss_pred             HHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--------------HHHHhHHHHHHH
Q 007863          499 ISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------VVEKSIRPCLVE  560 (587)
Q Consensus       499 l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--------------~~~~~i~~~l~~  560 (587)
                      +++++.....+.    ....+++.+..++.++++.++..++.+|..++...+..              ......++.+..
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  474 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN  474 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence            999987644332    12467899999999999999999999999998754321              111234677888


Q ss_pred             hcCCCCccHHHHHHHHHHHHH
Q 007863          561 LSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       561 l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +..+++++|+..|...+..+.
T Consensus       475 L~~~~~~~v~~~a~~il~~~~  495 (528)
T 4b8j_A          475 LQSHDNNEIYEKAVKILEAYW  495 (528)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHC
T ss_pred             HHcCCCHHHHHHHHHHHHHHC
Confidence            899999999999999988764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.88  E-value=8.6e-20  Score=190.05  Aligned_cols=450  Identities=11%  Similarity=0.005  Sum_probs=289.3

Q ss_pred             hhHHHHHHHHHHHHHHhhcChh--hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH----HHHHHHHHHHHhc
Q 007863           99 ETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLC  172 (587)
Q Consensus        99 ~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~  172 (587)
                      ++.+|..|+.+|..++..-...  -.....+|.+.++..+++..++..++..+..+....++.    .....++.+..++
T Consensus        70 ~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL  149 (644)
T 2z6h_A           70 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALL  149 (644)
T ss_dssp             CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGG
T ss_pred             CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHH
Confidence            4555555555555544321110  012234455555555555555555555554443322111    1245678888888


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHhcccCh--hhhhhchHHHH
Q 007863          173 QDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP--QDCVAHILPVI  246 (587)
Q Consensus       173 ~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l  246 (587)
                      .++++.++..++.+|..++...+.   .......++.+..++.+.+ ..++..++.+|..++..-..  .......++.+
T Consensus       150 ~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L  229 (644)
T 2z6h_A          150 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL  229 (644)
T ss_dssp             GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHH
Confidence            888899999998899888742111   1112234666666776653 56778888888888753221  12234578899


Q ss_pred             HHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhHHHH
Q 007863          247 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPC  323 (587)
Q Consensus       247 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~  323 (587)
                      ..++.+.+..+|..++.+|..++...........++|.+..++++.++++|..++.+|..++..-..  . ......++.
T Consensus       230 ~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~  309 (644)
T 2z6h_A          230 GLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA  309 (644)
T ss_dssp             HTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence            9999999999999999999999876444333456899999999999999999999999999764211  1 122346777


Q ss_pred             HhHhcCCC--cHHHHHHHHHHHHhhhhhhchH------HHHHhHHHHHHHhcCCCC-hHHHHHHHHHhHHhhhhhchh--
Q 007863          324 VKELSSDS--SQHVRSALATVIMGMAPILGKD------ATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGID--  392 (587)
Q Consensus       324 l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~i~~~~~~~--  392 (587)
                      +..++.+.  .+.+|..++.+++.++...+..      ......+|.+..++.+.+ +.++..++.++..++..-...  
T Consensus       310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~  389 (644)
T 2z6h_A          310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP  389 (644)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHH
T ss_pred             HHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHH
Confidence            87777653  3799999999999997543311      122457899999999875 799999999999987532211  


Q ss_pred             hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh-
Q 007863          393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW-  471 (587)
Q Consensus       393 ~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-  471 (587)
                      .....++|.+..++.+.++.+|..+...++.-.  +               .-.....+++..++.+|..++..-.... 
T Consensus       390 i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~--~---------------~~~~~~~~v~~~a~~aL~~La~~~~~~~~  452 (644)
T 2z6h_A          390 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ--F---------------VEGVRMEEIVEGCTGALHILARDVHNRIV  452 (644)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHTTC---------------------------CCSSCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHcCCHHHHHHHHhccchhhhhHhhhccccch--h---------------cccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            123467888888888877888776655433200  0               0012345677888888887764321111 


Q ss_pred             -hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHH--HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863          472 -AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEI--TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       472 -~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                       .....+|.+.+++.+++..+|..++.++.+++..-....  .....++.+..++.++++.+|..|+.+|..+...-+..
T Consensus       453 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~  532 (644)
T 2z6h_A          453 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQD  532 (644)
T ss_dssp             HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHH
T ss_pred             HHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHh
Confidence             235678888899988888899999999888875311111  12345678888899999999999999999987764322


Q ss_pred             HHHHhHHHHHHHhcCCC
Q 007863          549 VVEKSIRPCLVELSEDP  565 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d~  565 (587)
                      .......+.+..+..+.
T Consensus       533 ~~~~~~~~il~~~~~~~  549 (644)
T 2z6h_A          533 YKKRLSVELTSSLFRTE  549 (644)
T ss_dssp             HHHHHHHHHHHHHSCCS
T ss_pred             hhcccchHHHHHHHhCC
Confidence            22111356666655443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.88  E-value=3.7e-20  Score=188.69  Aligned_cols=379  Identities=11%  Similarity=0.089  Sum_probs=288.7

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhcccCc-hhHHHHHHHHHHHHhcccCh---h
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQ-DSVRLLAVEGCGALGKLLEP---Q  236 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~-~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      +|.+...+.++++.+|..++..|..+......    ......++|.+.+++.+++ +.+|..|+.+|..++..-+.   .
T Consensus        76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~  155 (528)
T 4b8j_A           76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV  155 (528)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            56666667788899999999999988764321    1223346788888888876 89999999999999874332   1


Q ss_pred             hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhC
Q 007863          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILN  312 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      ......+|.+..++.++++.+|..|+.+|+.++.....   .......++.+..++ ++.++.++..++.+|..++...+
T Consensus       156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~  235 (528)
T 4b8j_A          156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP  235 (528)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred             HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence            12345889999999999999999999999999753110   111234788888888 67789999999999999987532


Q ss_pred             --HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          313 --PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       313 --~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                        .......++|.+..++.+.++.++..++.+++.++......   .....++|.+..++.+.++.++..++.+|+.++.
T Consensus       236 ~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~  315 (528)
T 4b8j_A          236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT  315 (528)
T ss_dssp             CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence              12344678899999999999999999999999998543321   1234578999999999999999999999999986


Q ss_pred             hhchh---hHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHcCCCchHHHHHHHHH
Q 007863          388 VIGID---LLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWLKDKVYSIRDAAANN  459 (587)
Q Consensus       388 ~~~~~---~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      .....   .+...++|.+..++.++ ++.+|..++..++.++.. ..+.    +...++|.+..++.+.++.+|..|+.+
T Consensus       316 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          316 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            32211   12245789999999988 999999999999998852 2211    223567888899999999999999999


Q ss_pred             HHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---------HHH-----HHhHHHHHHh
Q 007863          460 VKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---------EIT-----CSQLLPVVIN  521 (587)
Q Consensus       460 l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~-----~~~~l~~l~~  521 (587)
                      |+.++.....+.    ....+++.+..++.+++..++..++.++..+......         ..+     ....+..+..
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~  474 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIEN  474 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHH
Confidence            999987633332    2357899999999999999999999999999864322         111     2234667788


Q ss_pred             hcCCCCccHHHHHHHHHHHHHhh
Q 007863          522 ASKDRVPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~l~~~  544 (587)
                      +..++++.++..|..++..++..
T Consensus       475 L~~~~~~~v~~~a~~il~~~~~~  497 (528)
T 4b8j_A          475 LQSHDNNEIYEKAVKILEAYWMD  497 (528)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred             HHcCCCHHHHHHHHHHHHHHCCC
Confidence            88899999999999999988754

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.87  E-value=1.2e-19  Score=185.58  Aligned_cols=421  Identities=12%  Similarity=0.044  Sum_probs=296.2

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh-hh--HHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-HL--KSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .....+|.+..++.++++.+|..++..|+.++..-... ..  ....++.+.+++.+ +++.+|..++.+|..++..-..
T Consensus        14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~   93 (529)
T 1jdh_A           14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence            33456788888889999999999999999998643221 11  12456666666654 4788999999999998654211


Q ss_pred             --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI  310 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (587)
                        .......+|.+..+++++++.+|..++.+|..++...+..   ......+|.+..++++++++++..++.+|..++..
T Consensus        94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~  173 (529)
T 1jdh_A           94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence              1223457899999999999999999999999998753221   11245789999999999999999999999888652


Q ss_pred             hCHH----HHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhH
Q 007863          311 LNPE----LAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (587)
Q Consensus       311 ~~~~----~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  383 (587)
                       .++    ......++.+..++.+. ....+..++.++..++..-..  .......+|.+..++.+.++.++..+++++.
T Consensus       174 -~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~  252 (529)
T 1jdh_A          174 -NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             -CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence             111    12234566666666544 456677778888877753221  1223457889999999999999999999999


Q ss_pred             HhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--hh-hHHHHHHHHHHHHcCC--CchHHHHHHHH
Q 007863          384 QVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG-FFDDKLGALCMQWLKD--KVYSIRDAAAN  458 (587)
Q Consensus       384 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~-~~~~~l~~~l~~~l~d--~~~~vr~~a~~  458 (587)
                      .++...........++|.+..++.++++.+|..++..++.++..-.  .. ......++.+..++.+  .++.+|..|+.
T Consensus       253 ~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~  332 (529)
T 1jdh_A          253 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence            9987654333345789999999999999999999999998865311  11 1122356777777754  34799999999


Q ss_pred             HHHHHHHHhCh------hhhhhchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccCh--HHHHHhHHHHHHhhcCCCCcc
Q 007863          459 NVKRLAEEFGP------DWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGS--EITCSQLLPVVINASKDRVPN  529 (587)
Q Consensus       459 ~l~~l~~~~~~------~~~~~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~~  529 (587)
                      +|+.++...+.      .......+|.+.+++.+++ +.+|..+++++++++..-..  ......++|.+..++.+.++.
T Consensus       333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~  412 (529)
T 1jdh_A          333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD  412 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHH
Confidence            99999753222      1123467899999998876 58999999999999863221  122456889999988887777


Q ss_pred             HHHHHHHHHH----------------------HHHhhhch--HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          530 IKFNVAKVLQ----------------------SLIPIVDQ--SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       530 vR~~a~~~l~----------------------~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      +|..++++++                      .++.....  .......+|.|..++.|++++|+..|.+++..+.
T Consensus       413 v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             HC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            7776555444                      34332111  1233456789999999999999999999998875

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.85  E-value=7.4e-19  Score=180.79  Aligned_cols=508  Identities=10%  Similarity=0.048  Sum_probs=340.2

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhhh
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLP   89 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~   89 (587)
                      .+..+-+.+.++|...|..++..+-.+ ...|.+..+ .....++...+++.+.++..--.+..+++.  ..+......+
T Consensus        35 e~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~~~-~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~--~~e~~~l~in  110 (618)
T 1w63_A           35 ECAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPAHF-GQLECLKLIASQKFTDKRIGYLGAMLLLDE--RQDVHLLMTN  110 (618)
T ss_dssp             HHHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCCGG-GHHHHHHHHHSSSHHHHHHHHHHHHHHCCC--CHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCCcc-hHHHHHHHHcCCchHHHHHHHHHHHHHhCC--CcHHHHHHHH
Confidence            466777888888888888888777665 345643221 111222222345555554444444444332  2222344556


Q ss_pred             HHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHH
Q 007863           90 PLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYR  169 (587)
Q Consensus        90 ~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~  169 (587)
                      .+.+-+.++++.+|..|+++++.+..    ..+.+.+.|.+.++..+.++.+|..|+..+..++... ++..+.+++.+.
T Consensus       111 ~l~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~~~~l~  185 (618)
T 1w63_A          111 CIKNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMFLPATK  185 (618)
T ss_dssp             HHHHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGGGGGTT
T ss_pred             HHHHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHHHHHHH
Confidence            67777789999999999999999873    2455678888888888889999999988887777654 344457888888


Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHhcc-----------cCchhHHHHHHHHHHHHhccc
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEA-----AHLKSEIMSIFEELTQ-----------DDQDSVRLLAVEGCGALGKLL  233 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~i~~~l~~l~~-----------d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      .++.|+++.|+..++.+|+.++..-++     ....+.++..+..+..           ..++..+...+++++.+...-
T Consensus       186 ~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~  265 (618)
T 1w63_A          186 NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND  265 (618)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred             HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence            999999999999999999998754321     1123334444444322           236777888888888877542


Q ss_pred             ChhhhhhchHHHHHHhc------CCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHH
Q 007863          234 EPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKI  307 (587)
Q Consensus       234 ~~~~~~~~l~~~l~~~~------~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  307 (587)
                      +.  ..+.+.+.+.+++      ++.+..|...+++++..+..   .........+.+..++.++++++|..|+.+|+.+
T Consensus       266 ~~--~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~---~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i  340 (618)
T 1w63_A          266 DD--SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS---ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKT  340 (618)
T ss_dssp             HH--HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            21  2344555555543      23466888888888765421   1111123567778888888999999999999999


Q ss_pred             HHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          308 CRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       308 ~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                      +...+  .......+.+..++.|++..+|..+++.+..++..-.    .+.+++.+...+.+.+.++|..++.+++.++.
T Consensus       341 ~~~~p--~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n----v~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          341 VQTDH--NAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN----IRGMMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             HHHHH--HHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS----THHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HhhCH--HHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            87522  2234456677788899999999999999999875422    23455666677777889999999999999998


Q ss_pred             hhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHH
Q 007863          388 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       388 ~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~  465 (587)
                      .+....  ...++.+.+++.+....++..++..+..+....+ + .....++.+...+.+  ....+...++.++|+.+.
T Consensus       415 k~~~~~--~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~-l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          415 KYAPSK--RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV-E-MHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             SSCCCH--HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC-S-THHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             HhCccH--HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh-h-HHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence            765432  4577888888877666666666666666655432 1 223344445555443  233455578999999987


Q ss_pred             HhChh---------hhhhchHHHHHhhhc--CCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHH
Q 007863          466 EFGPD---------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNV  534 (587)
Q Consensus       466 ~~~~~---------~~~~~~~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a  534 (587)
                      .+...         .....+++.+..++.  ..+..+|..++.++..+....+..  .+.+...+..+..|.+++||..|
T Consensus       491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~~--~~~l~~~L~~~~~~~d~evrdRA  568 (618)
T 1w63_A          491 LLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTCT--VNRIKKVVSIYGSSIDVELQQRA  568 (618)
T ss_dssp             HHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSSC--HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             HhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcch--HHHHHHHHHHhcCCCCHHHHHHH
Confidence            65320         001234455555443  467889999999999998765432  34555556666788899999999


Q ss_pred             HHHHHHHHh
Q 007863          535 AKVLQSLIP  543 (587)
Q Consensus       535 ~~~l~~l~~  543 (587)
                      ...+..+..
T Consensus       569 ~~y~~ll~~  577 (618)
T 1w63_A          569 VEYNALFKK  577 (618)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHcC
Confidence            998887754

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.84  E-value=6.4e-18  Score=172.96  Aligned_cols=539  Identities=12%  Similarity=0.057  Sum_probs=353.5

Q ss_pred             CCcccHHHHHHHhcCcc--HHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcch
Q 007863            6 EPLYPIAVLIDELKNDD--IQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEY   83 (587)
Q Consensus         6 ~~~~~~~~l~~~l~s~d--~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~   83 (587)
                      .+|-.+..++..+.+..  .++|...-..+..+...+..            +...+..+.+..+.+.+.-+.  .| .+ 
T Consensus         8 ~~~~~l~~~I~~ir~~~~~~~e~~~i~~E~~~ir~~~~~------------~~~~~~~~k~~~l~Kli~l~~--~G-~d-   71 (621)
T 2vgl_A            8 EGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKG------------DKALDGYSKKKYVCKLLFIFL--LG-HD-   71 (621)
T ss_dssp             -CCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHS------------SSCCCHHHHHHHHHHHHHHHH--HS-CC-
T ss_pred             CCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHHHHHHHHH--cC-CC-
Confidence            45666888888887653  34555444455555433311            000112223334444433221  23 22 


Q ss_pred             HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHH
Q 007863           84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTE  163 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~  163 (587)
                      .+...+-+.+++.+++...|+.+.-++..+++.-+ +. .......+.+=..++++.+|..|+..++.+.   .++..+.
T Consensus        72 ~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~-e~-~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~---~~e~~~~  146 (621)
T 2vgl_A           72 IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNS-EL-IRLINNAIKNDLASRNPTFMGLALHCIANVG---SREMAEA  146 (621)
T ss_dssp             CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCH-HH-HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC---CHHHHHH
T ss_pred             CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCc-HH-HHHHHHHHHHhcCCCCHHHHHHHHHHhhccC---CHHHHHH
Confidence            23344555567788999999998888888776532 21 2223344444455677888988888887773   3678888


Q ss_pred             HHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh--h
Q 007863          164 LRTIYRQLC--QDDMPMVRRSAATNLGKFAATVEAAHLKS--EIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ--D  237 (587)
Q Consensus       164 l~~~l~~l~--~~~~~~vR~~a~~~l~~l~~~~~~~~~~~--~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~--~  237 (587)
                      +.+.+.+++  .|.++.||+.|+-++..+....++  ..+  .+.+.+.++++|.++.|+.+|+.++..+...-+..  .
T Consensus       147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~--~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~  224 (621)
T 2vgl_A          147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD--LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKT  224 (621)
T ss_dssp             HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG--GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTT
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh--hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHH
Confidence            999999999  999999999999999999985433  333  67888888999999999999999998887653321  1


Q ss_pred             hhhchHHHHHHhcCCC-------------chHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhc---CC---------C
Q 007863          238 CVAHILPVIVNFSQDK-------------SWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL---RD---------N  292 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~-------------~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d---------~  292 (587)
                      ..+.++..+.+++.+.             ++..+...++.++.++.. +.......+.+.+..++   .+         .
T Consensus       225 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~-~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~  303 (621)
T 2vgl_A          225 SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP-EDPAVRGRLTECLETILNKAQEPPKSKKVQHS  303 (621)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC-SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhhccCccccccccc
Confidence            2333444444443221             567777777776654321 00011112333332222   11         1


Q ss_pred             h--HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcC-C
Q 007863          293 E--AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK-D  369 (587)
Q Consensus       293 ~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d  369 (587)
                      +  ..|...|++++..+.   ..........+.+..++.+++..+|..++.++..++...+.........+.+...++ |
T Consensus       304 n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d  380 (621)
T 2vgl_A          304 NAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTE  380 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccC
Confidence            2  367777777776653   223444667788888888899999999999999998765422344556677778888 9


Q ss_pred             CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCc
Q 007863          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKV  449 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  449 (587)
                      ++..||..++..+..++..    ...+.++..+...+.+.+..+|..++..++.++..+.+.  ...++..+++++.+..
T Consensus       381 ~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~--~~~~v~~Ll~ll~~~~  454 (621)
T 2vgl_A          381 RDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD--YTWYVDTILNLIRIAG  454 (621)
T ss_dssp             CCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHG
T ss_pred             CCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc--HHHHHHHHHHHHHhhc
Confidence            9999999999998888743    223567788888888889999999999999998877543  3456777777776655


Q ss_pred             hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCcc--HHHHHHHHHHHHhhcccChHH-H-HHhHHHHHHhhcCC
Q 007863          450 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHY--LYRMTILQAISLLAPVMGSEI-T-CSQLLPVVINASKD  525 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~--~~r~~a~~~l~~l~~~~~~~~-~-~~~~l~~l~~~l~d  525 (587)
                      ..+...++..+..++.....  .....+..+.+.+.++..  .+-..+++.+|..+..+.... . ...++..+.+.+.+
T Consensus       455 ~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~  532 (621)
T 2vgl_A          455 DYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHL  532 (621)
T ss_dssp             GGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTT
T ss_pred             ccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhcc
Confidence            55666677777766654322  245566677777777753  344567799999887443211 0 12345566666678


Q ss_pred             CCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC--CCCccHHHHHHHHHHHHH
Q 007863          526 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKD  581 (587)
Q Consensus       526 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~--d~~~~Vr~~a~~al~~l~  581 (587)
                      .++.+|..++.++..++...+.  ..+.+...|.....  |.+.+||.+|..-+.-+.
T Consensus       533 ~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~  588 (621)
T 2vgl_A          533 CSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLRLST  588 (621)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence            8999999999999999776532  33455566655666  999999999998776653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.83  E-value=5.1e-18  Score=170.95  Aligned_cols=377  Identities=12%  Similarity=0.115  Sum_probs=268.6

Q ss_pred             HHHHHHhcccCchhHHHHHHHHHHHHhcccC--h--hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC---C
Q 007863          204 MSIFEELTQDDQDSVRLLAVEGCGALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---E  275 (587)
Q Consensus       204 ~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~  275 (587)
                      ++-+.+.++++++..+..|...+.++.+.-.  +  .-+...++|.+.++++ +.++.++..|+.+|++++..-..   .
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            3444556666777777777777776654321  1  2234457888888876 44678888888988888742110   0


Q ss_pred             CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhcCCCc-----HHHHHHHHHHHHhhh
Q 007863          276 PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMA  347 (587)
Q Consensus       276 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-----~~vr~~a~~~l~~l~  347 (587)
                      ......+|.+..++++++.+||..|+.+|+.++.....   .......++.+..++.+++     ..+...++.++..++
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            11234789999999999999999999999998753211   1222346777777776543     346667777777776


Q ss_pred             hhhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHH
Q 007863          348 PILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYI  421 (587)
Q Consensus       348 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l  421 (587)
                      ..-.   .-.....++|.+..++.+.+++++..++++|..++..-...   .....++|.+..++.++++.++..++..+
T Consensus       219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            5322   22334678899999999999999999999999988543211   12345789999999999999999999999


Q ss_pred             HHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHH
Q 007863          422 PLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTI  495 (587)
Q Consensus       422 ~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a  495 (587)
                      +.++..-..   .......++.+..++.+++..+|..|+.+|+.++......   .....++|.+..++.+++..+|..|
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            887643211   1112234666778889999999999999999987522111   1346789999999999999999999


Q ss_pred             HHHHHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHH-----HHhHHHHHHHhc
Q 007863          496 LQAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVV-----EKSIRPCLVELS  562 (587)
Q Consensus       496 ~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~-----~~~i~~~l~~l~  562 (587)
                      +++|.+++.....+.    .....++.+..++.++++.++..++.+|..+....+.    +.+     ....+..|..|.
T Consensus       379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  458 (510)
T 3ul1_B          379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  458 (510)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG
T ss_pred             HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH
Confidence            999999987554432    2356789999999999999999999999998764321    122     123567888899


Q ss_pred             CCCCccHHHHHHHHHHHH
Q 007863          563 EDPDVDVRFFATQALQSK  580 (587)
Q Consensus       563 ~d~~~~Vr~~a~~al~~l  580 (587)
                      ..++.+|+..|.+.+.++
T Consensus       459 ~~~n~~i~~~A~~iie~y  476 (510)
T 3ul1_B          459 RHENESVYKASLNLIEKY  476 (510)
T ss_dssp             GCSSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            999999999999888764

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.82  E-value=2.4e-17  Score=167.14  Aligned_cols=376  Identities=12%  Similarity=0.114  Sum_probs=267.6

Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccC--h--hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC---CC
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EP  276 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~  276 (587)
                      +.+.+.++++++..+..|+..+.++...-.  +  ......++|.+.+++. +.++.++..|+.+|..++..-..   ..
T Consensus        79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~v  158 (529)
T 3tpo_A           79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  158 (529)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344445566666666666666665543221  1  2234557888888775 45688888888888888742110   11


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH---HHHHHhHHHHHhHhcCCCc-----HHHHHHHHHHHHhhhh
Q 007863          277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP---ELAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAP  348 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~  348 (587)
                      .....+|.+..++++++.++|..|+.+|+.++..-..   .......++.+..++.+++     ..+...++.++..++.
T Consensus       159 v~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  238 (529)
T 3tpo_A          159 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  238 (529)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence            1234789999999999999999999999998753111   1222346777777776543     3456677777777765


Q ss_pred             hhc---hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHH
Q 007863          349 ILG---KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIP  422 (587)
Q Consensus       349 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~  422 (587)
                      .-.   .......++|.+..++.+.+++++..++++|..++..-...   .....++|.+..++.++++.++..++.+++
T Consensus       239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~  318 (529)
T 3tpo_A          239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  318 (529)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHH
Confidence            322   22334668899999999999999999999999987543211   123467899999999999999999999998


Q ss_pred             HHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHH
Q 007863          423 LLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       423 ~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~  496 (587)
                      .++..-..   .......++.+..++.+++..+|..|+.+|+.++......   .....++|.+..++.+++..+|..|+
T Consensus       319 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~  398 (529)
T 3tpo_A          319 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAA  398 (529)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHH
Confidence            88642111   1122345777889999999999999999999997532111   13466899999999999999999999


Q ss_pred             HHHHHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch----HHHHH-----hHHHHHHHhcC
Q 007863          497 QAISLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----SVVEK-----SIRPCLVELSE  563 (587)
Q Consensus       497 ~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~-----~i~~~l~~l~~  563 (587)
                      ++|.+++.....+.    ....+++.+..++.++++.++..++.+|..+....+.    +.+..     ..+..|..|..
T Consensus       399 ~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  478 (529)
T 3tpo_A          399 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  478 (529)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGG
T ss_pred             HHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHc
Confidence            99999987554442    2345789999999999999999999999998764321    22221     24677888888


Q ss_pred             CCCccHHHHHHHHHHHH
Q 007863          564 DPDVDVRFFATQALQSK  580 (587)
Q Consensus       564 d~~~~Vr~~a~~al~~l  580 (587)
                      .++.+|+..|.+.+.+.
T Consensus       479 ~~n~~i~~~A~~iie~y  495 (529)
T 3tpo_A          479 HENESVYKASLNLIEKY  495 (529)
T ss_dssp             CSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999998888764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.80  E-value=2.5e-17  Score=165.96  Aligned_cols=378  Identities=10%  Similarity=0.077  Sum_probs=278.6

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccChh---h
Q 007863          166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEPQ---D  237 (587)
Q Consensus       166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~~---~  237 (587)
                      +-+.+.+.++++.++..++..+.++.+.-..++    +..-++|.|.++++. +++.++..|+.+|..++..-++.   .
T Consensus        60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v  139 (510)
T 3ul1_B           60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV  139 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            444566788889999999999998865433222    223368899998864 45789999999999998654331   1


Q ss_pred             hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHH
Q 007863          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKICR  309 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~  309 (587)
                      .....+|.+..++++++..+|..|+.+|++++....   ........++.+..++.+.+     ..+...++.++..++.
T Consensus       140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~  219 (510)
T 3ul1_B          140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR  219 (510)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhh
Confidence            234579999999999999999999999999974311   01112346788888887643     3466777888888776


Q ss_pred             hhCH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhH
Q 007863          310 ILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (587)
Q Consensus       310 ~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  383 (587)
                      .-.+   -.....++|.+.+++.+++..++..++.++..++......   .....++|.+..++.+.++.++..++.+++
T Consensus       220 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~  299 (510)
T 3ul1_B          220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG  299 (510)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHH
Confidence            4322   1334678999999999999999999999999988643211   122357899999999999999999999999


Q ss_pred             Hhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHHH
Q 007863          384 QVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAAA  457 (587)
Q Consensus       384 ~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~  457 (587)
                      .++..-...   ......+|.+..++.+++..+|..++..++.++..-..   ......++|.+..++.+.+..+|..|+
T Consensus       300 nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa  379 (510)
T 3ul1_B          300 NIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA  379 (510)
T ss_dssp             HHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHH
Confidence            987432211   12235677778888999999999999999888642211   112235788999999999999999999


Q ss_pred             HHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---cChH-HH-----HHhHHHHHHhhcC
Q 007863          458 NNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGSE-IT-----CSQLLPVVINASK  524 (587)
Q Consensus       458 ~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~~-~~-----~~~~l~~l~~~l~  524 (587)
                      .+|+.++.....+.    .....++.+.+++.+++..++..++.+|.++...   .+.. .+     ....+..+..+..
T Consensus       380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~  459 (510)
T 3ul1_B          380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR  459 (510)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred             HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence            99999987544432    2367899999999999999999999999988753   2222 11     1234567777778


Q ss_pred             CCCccHHHHHHHHHHHHHh
Q 007863          525 DRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       525 d~~~~vR~~a~~~l~~l~~  543 (587)
                      +++..|+..|.+.|...+.
T Consensus       460 ~~n~~i~~~A~~iie~yf~  478 (510)
T 3ul1_B          460 HENESVYKASLNLIEKYFS  478 (510)
T ss_dssp             CSSHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHHHCC
Confidence            8999999999999887764

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.80  E-value=5.8e-18  Score=157.17  Aligned_cols=254  Identities=20%  Similarity=0.144  Sum_probs=176.8

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  360 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  360 (587)
                      .++.+...++|+++.+|..|+.+|+.++.        +..++.+..+++|+++.+|..++.+++.+...   ......++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~---~~~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC---KKCEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC---TTTHHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccc---cccchHHH
Confidence            46677777777788888888888777642        34566777777788888888888888777532   11123345


Q ss_pred             HHHH-HhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHH
Q 007863          361 PIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  439 (587)
Q Consensus       361 ~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  439 (587)
                      +.+. .+++|+++.||..++.+|+.+....+  ...+.++|.+...+.|+++.+|..++..++.+..        +..+|
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~  162 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  162 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence            5555 35677788888888888887764321  1124567777778888888888888888765543        22466


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHH
Q 007863          440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVV  519 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l  519 (587)
                      .+...+.|+++.||..|+.+|+.+.    ..  ....+|.+...+.|+++.+|..++.+++.+..        +..+|.+
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~----~~--~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~--------~~~~~~L  228 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININK----YD--NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVL  228 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHT----CC--CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhc----cC--cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--------HhhHHHH
Confidence            7777788888888888888887762    11  24567788888888888889888888888763        3466777


Q ss_pred             HhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcC-CCCccHHHHHHHHHHH
Q 007863          520 INASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSE-DPDVDVRFFATQALQS  579 (587)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~  579 (587)
                      ...++|++  +|..++.+|+.+..        ..++|.|.+++. +++++++..+..+++.
T Consensus       229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~  279 (280)
T 1oyz_A          229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLKR  279 (280)
T ss_dssp             HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred             HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence            77777743  88888888888754        256777777654 4567788777777653

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.79  E-value=1.9e-16  Score=160.49  Aligned_cols=379  Identities=10%  Similarity=0.081  Sum_probs=278.8

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhcc-cCchhHHHHHHHHHHHHhcccCh---h
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQ-DDQDSVRLLAVEGCGALGKLLEP---Q  236 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~-d~~~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      ++-+...+.++++..+..++..+.++...-..+    ....-++|.|.+++. ++++.++..|+.+|..++..-+.   .
T Consensus        78 l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~  157 (529)
T 3tpo_A           78 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  157 (529)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            344556667888999998888888876432221    223346888888886 45688999999999999875443   1


Q ss_pred             hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC---CCCcccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHH
Q 007863          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKIC  308 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~  308 (587)
                      ......+|.+..++.+++..+|..|+.+|++++..-.   ........++.+..++.+.+     ..+...++.++..++
T Consensus       158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  237 (529)
T 3tpo_A          158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  237 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence            2344588999999999999999999999999974211   01112346788888887543     346677788888877


Q ss_pred             HhhCH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHh
Q 007863          309 RILNP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKL  382 (587)
Q Consensus       309 ~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  382 (587)
                      ..-.+   ......++|.+..++.+++..++..++.++..++......   .....++|.+..++.++++.++..++.++
T Consensus       238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL  317 (529)
T 3tpo_A          238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  317 (529)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence            64322   1334678999999999999999999999999887643211   12245789999999999999999999999


Q ss_pred             HHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcCCCchHHHHHH
Q 007863          383 DQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLKDKVYSIRDAA  456 (587)
Q Consensus       383 ~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a  456 (587)
                      +.++..-..   .......+|.+..++.+++..+|..++..++.++..-..   ......++|.+..++.+.+..+|..|
T Consensus       318 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  397 (529)
T 3tpo_A          318 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAA  397 (529)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHH
Confidence            998743211   112345778888999999999999999999988753211   11223578899999999999999999


Q ss_pred             HHHHHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc---cCh-HHHH-----HhHHHHHHhhc
Q 007863          457 ANNVKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV---MGS-EITC-----SQLLPVVINAS  523 (587)
Q Consensus       457 ~~~l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~---~~~-~~~~-----~~~l~~l~~~l  523 (587)
                      +.+|+.++..-..+.    ....+++.+.+++..++..++..++.+|.++...   .+. +.+.     ...+..+..+.
T Consensus       398 ~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq  477 (529)
T 3tpo_A          398 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ  477 (529)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH
Confidence            999999987544432    2356899999999999999999999999988752   222 2121     12355677777


Q ss_pred             CCCCccHHHHHHHHHHHHHh
Q 007863          524 KDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       524 ~d~~~~vR~~a~~~l~~l~~  543 (587)
                      .+++..|+..|.+.|...+.
T Consensus       478 ~~~n~~i~~~A~~iie~yf~  497 (529)
T 3tpo_A          478 RHENESVYKASLNLIEKYFS  497 (529)
T ss_dssp             GCSSHHHHHHHHHHHHHHC-
T ss_pred             cCCCHHHHHHHHHHHHHHCC
Confidence            88999999999999887654

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.78  E-value=1.7e-15  Score=165.06  Aligned_cols=526  Identities=10%  Similarity=0.061  Sum_probs=318.0

Q ss_pred             cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----------
Q 007863            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----------   77 (587)
Q Consensus         8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----------   77 (587)
                      +..+..++....|+|...|  |.+.|...-   ..+..+..|+..+.+. +.+.++|..++-.+.+....          
T Consensus         4 ~~~l~~~L~~~~spd~~~r--Ae~~L~~~~---~~p~~~~~L~~il~~~-~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~   77 (960)
T 1wa5_C            4 LETVAKFLAESVIASTAKT--SERNLRQLE---TQDGFGLTLLHVIAST-NLPLSTRLAGALFFKNFIKRKWVDENGNHL   77 (960)
T ss_dssp             HHHHHHHHHHTTSGGGHHH--HHHHHHHHH---TSTTHHHHHHHHHHCT-TSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred             HHHHHHHHHHhcCCCHHHH--HHHHHHHhh---cCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence            3456777777788999998  888887652   1223444455444321 23568898888888765431          


Q ss_pred             cCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC
Q 007863           78 VGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP  157 (587)
Q Consensus        78 ~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~  157 (587)
                      ++ .+....+-..+...+.+++..+|..+..++..+++.-.++. ++.++|.+.+...+++...+..+..++..+++...
T Consensus        78 l~-~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~-Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~  155 (960)
T 1wa5_C           78 LP-ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR  155 (960)
T ss_dssp             SC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred             CC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccc-hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence            12 12223333333333334458999999999999998755543 56789999888877766677777777776665321


Q ss_pred             -----HHH-------HHHH----HHHHHHh---cCCCCH---HHH------HHHHHHHHHHHHH-Hhh--hhhHHHHHHH
Q 007863          158 -----EAL-------KTEL----RTIYRQL---CQDDMP---MVR------RSAATNLGKFAAT-VEA--AHLKSEIMSI  206 (587)
Q Consensus       158 -----~~~-------~~~l----~~~l~~l---~~~~~~---~vR------~~a~~~l~~l~~~-~~~--~~~~~~i~~~  206 (587)
                           ++.       ....    ++++...   +.++..   .+|      ..+++++..+... .+.  .......++.
T Consensus       156 ~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~  235 (960)
T 1wa5_C          156 PLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGI  235 (960)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHH
T ss_pred             HhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence                 111       1112    2333222   444322   234      2233333332210 011  1122334455


Q ss_pred             HHHhccc----------Cc-----hhHHHHHHHHHHHHhcccChh--hhhhchHHHHHHhcC-----CCchHHHHHHHHH
Q 007863          207 FEELTQD----------DQ-----DSVRLLAVEGCGALGKLLEPQ--DCVAHILPVIVNFSQ-----DKSWRVRYMVANQ  264 (587)
Q Consensus       207 l~~l~~d----------~~-----~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~-----d~~~~vR~~a~~~  264 (587)
                      +...+..          +.     +.+|+.+++++..+.+..++.  .+.+.+++.+.+.+.     ..+..++..+++.
T Consensus       236 ~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~f  315 (960)
T 1wa5_C          236 FHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSF  315 (960)
T ss_dssp             HHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHH
T ss_pred             HHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence            4444321          11     357888888888887665442  223445555555443     3467888888888


Q ss_pred             HHHHHHHhC-CCC-----cccchH-HHHHHhc-----------------------CCChHHHHHHHHHhHHHHHHhhCHH
Q 007863          265 LYELCEAVG-PEP-----TRSDVV-PAYVRLL-----------------------RDNEAEVRIAAAGKVTKICRILNPE  314 (587)
Q Consensus       265 l~~l~~~~~-~~~-----~~~~l~-~~l~~~l-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~  314 (587)
                      +..++..-. ...     ....++ +.+...+                       .+..+.+|.+|...+..++..++ +
T Consensus       316 l~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~  394 (960)
T 1wa5_C          316 LTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-V  394 (960)
T ss_dssp             HHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-H
T ss_pred             HHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-h
Confidence            887753210 011     111222 2222221                       01224689999999999999887 4


Q ss_pred             HHHHhHHHHHhHhcC------CCcHHHHHHHHHHHHhhhhhh-----chH------HHHHhHHHHHHHhcCCC---ChHH
Q 007863          315 LAIQHILPCVKELSS------DSSQHVRSALATVIMGMAPIL-----GKD------ATIEQLLPIFLSLLKDE---FPDV  374 (587)
Q Consensus       315 ~~~~~~~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~-----~~~------~~~~~l~~~l~~~l~d~---~~~v  374 (587)
                      ...+.+++.+.+.+.      +++|+.|.+++.+++.++...     +..      ...+.+...+...+.|+   .+.|
T Consensus       395 ~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~v  474 (960)
T 1wa5_C          395 LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIIL  474 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCcee
Confidence            455667777766665      678999999999999997532     111      22222233344455666   8999


Q ss_pred             HHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----------hh---hHHHHHHHHH
Q 007863          375 RLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALC  441 (587)
Q Consensus       375 r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----------~~---~~~~~l~~~l  441 (587)
                      |..++++++.++..+.++ ....++|.+...+.|++..||..++.++..++....          .+   .+.+.+++.+
T Consensus       475 r~~a~~~lg~~~~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L  553 (960)
T 1wa5_C          475 RVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL  553 (960)
T ss_dssp             HHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHH
Confidence            999999999999888544 457788888888899999999999999999887421          22   2345566666


Q ss_pred             HHHcCCCc-----hHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhh----cCC-ccHHHHHHHHHHHHhhcccChH
Q 007863          442 MQWLKDKV-----YSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMI----NNP-HYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       442 ~~~l~d~~-----~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l----~~~-~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      ...+....     ......+..+++.++..++.+.  +...+++.+...+    .++ +...+...+.+++.++...+++
T Consensus       554 ~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~  633 (960)
T 1wa5_C          554 IALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQ  633 (960)
T ss_dssp             HHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc
Confidence            66666531     1134678888998888877653  2344555554432    333 5567777899999988875543


Q ss_pred             ---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHh
Q 007863          510 ---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       510 ---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~  543 (587)
                         .+.+.++|.+...+..........+...++.+..
T Consensus       634 ~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          634 NLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence               3567788888777766656666666666665543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.78  E-value=1.7e-17  Score=153.99  Aligned_cols=255  Identities=15%  Similarity=0.075  Sum_probs=198.0

Q ss_pred             hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH  319 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      +.-++.+...+.|+++.+|..|+..|+.+.        .+..++.+..+++|+++.+|..|+.+|+.++..  .. ....
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~--~~-~~~~   90 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC--KK-CEDN   90 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC--TT-THHH
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccc--cc-cchH
Confidence            345677888889999999999999998764        245788899999999999999999999887531  11 1234


Q ss_pred             HHHHHh-HhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863          320 ILPCVK-ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       320 ~~~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~  398 (587)
                      +++.+. .+++|+++.||..++.+++.++...+  ...+.++|.+...++|+++.||..++.+|+.+..        +..
T Consensus        91 l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~  160 (280)
T 1oyz_A           91 VFNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KAT  160 (280)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CC
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHH
Confidence            556665 35688999999999999998874322  1234567888899999999999999999998753        347


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHH
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  478 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  478 (587)
                      +|.+..++.|+++.+|..++..++.+...      .+...+.+...+.|+++.||..|+.+|+.+.        ....+|
T Consensus       161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~  226 (280)
T 1oyz_A          161 IPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLS  226 (280)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHhhccC------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHH
Confidence            88888899999999999999999776311      2456788888999999999999999998864        245788


Q ss_pred             HHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCC-CCccHHHHHHHHHH
Q 007863          479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQ  539 (587)
Q Consensus       479 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~  539 (587)
                      .+...+.|++  +|..++.+++.++.        +..+|.+..++.+ +++.++..++..+.
T Consensus       227 ~L~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          227 VLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            8888888765  88899999998865        3577888888765 56778877777664

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.76  E-value=1.2e-15  Score=156.11  Aligned_cols=462  Identities=12%  Similarity=0.057  Sum_probs=306.4

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHH
Q 007863           99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPM  178 (587)
Q Consensus        99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~  178 (587)
                      +...|..++.-+-.+.- .|.+ + ....+-+.++..++++..|..++-.+....+. .++..-..++.+.+-++|+++.
T Consensus        51 ~~~~k~~~l~Kli~l~~-~G~d-~-s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~-~~e~~~L~iN~l~kDl~~~n~~  126 (621)
T 2vgl_A           51 DGYSKKKYVCKLLFIFL-LGHD-I-DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS-NSELIRLINNAIKNDLASRNPT  126 (621)
T ss_dssp             CHHHHHHHHHHHHHHHH-HSCC-C-CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC-CHHHHHHHHHHHHHHHHSCCHH
T ss_pred             CHHHHHHHHHHHHHHHH-cCCC-C-chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHhcCCCCHH
Confidence            45555555544443322 3332 1 23445555677777777777766665555543 3555566778888888999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhc--ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchH
Q 007863          179 VRRSAATNLGKFAATVEAAHLKSEIMSIFEELT--QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWR  256 (587)
Q Consensus       179 vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~  256 (587)
                      +|..|+.+++.+..    +.+.+.+.|.+.+++  .|.++.||+.|+.++.++....++....+.+.+.+.+++.|+++.
T Consensus       127 ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~lL~d~d~~  202 (621)
T 2vgl_A          127 FMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLG  202 (621)
T ss_dssp             HHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHHHhCCCCcc
Confidence            99999999999853    467788899999999  899999999999999999985543211137899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHH----HHHhcCC--C-----------hHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863          257 VRYMVANQLYELCEAVGPEPTRSDVVPA----YVRLLRD--N-----------EAEVRIAAAGKVTKICRILNPELAIQH  319 (587)
Q Consensus       257 vR~~a~~~l~~l~~~~~~~~~~~~l~~~----l~~~l~d--~-----------~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      |+.+|+..+..++..-+..  ...++|.    +.+++.+  -           ++..+...++.+..++..-.++ ..+.
T Consensus       203 V~~~a~~~l~~i~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~-~~~~  279 (621)
T 2vgl_A          203 VVTAATSLITTLAQKNPEE--FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA-VRGR  279 (621)
T ss_dssp             HHHHHHHHHHHHHHHCHHH--HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH-HHHH
T ss_pred             HHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH-HHHH
Confidence            9999999999988652210  1123333    3333321  1           4567777777666654321122 1122


Q ss_pred             H---HHHHhHhcC---------CCc--HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863          320 I---LPCVKELSS---------DSS--QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (587)
Q Consensus       320 ~---~~~l~~~~~---------d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  385 (587)
                      +   ++.+.+.+.         +.+  ..|...+++++..+.   +...........+..++.+.++++|..++.++..+
T Consensus       280 l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l  356 (621)
T 2vgl_A          280 LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTL  356 (621)
T ss_dssp             HHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            2   222222211         112  266677777766664   23344556777888899889999999999999999


Q ss_pred             hhhhchhhHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863          386 NQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  464 (587)
Q Consensus       386 ~~~~~~~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      +...+.....+...+.+...+. |++..+|..+++.+..++..-   . .+.++.-+...+.+.+.+.|..++..++.++
T Consensus       357 ~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~---N-v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          357 ASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS---N-AQQIVAEMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             TTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH---H-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh---h-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            8765422333556677777777 999999999999987776432   2 3556777777888889999999999999999


Q ss_pred             HHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCc--cHHHHHHHHHHHHH
Q 007863          465 EEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVP--NIKFNVAKVLQSLI  542 (587)
Q Consensus       465 ~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~l~  542 (587)
                      ..+..+  ....+..+.+++.+....+...++..+..+....+.  ..+..+..+...+.++..  .+-..+++.+|+.+
T Consensus       433 ~k~~~~--~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~--~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~  508 (621)
T 2vgl_A          433 EKYAVD--YTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDD--VQGYAAKTVFEALQAPACHENLVKVGGYILGEFG  508 (621)
T ss_dssp             HHHCSS--THHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCS--CHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHT
T ss_pred             HhcCCc--HHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChh--HHHHHHHHHHHHHcCccchHHHHHHHHHHhcchH
Confidence            888654  345566666666554333445555556655543322  334556666777777643  34445668888887


Q ss_pred             hhhchHH-H-HHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          543 PIVDQSV-V-EKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       543 ~~~~~~~-~-~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ..+.... . ...++..+.+-..+.++.||..+..|+.++..
T Consensus       509 ~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~  550 (621)
T 2vgl_A          509 NLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVN  550 (621)
T ss_dssp             HHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            6654321 0 01345556555577889999999999888754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.76  E-value=5.1e-14  Score=153.39  Aligned_cols=556  Identities=13%  Similarity=0.072  Sum_probs=325.7

Q ss_pred             HHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccC-CchHHHHHHHHHhcccccCcC----Ccch----
Q 007863           13 VLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND-DDDEVLLAMAEELGVFIPYVG----GLEY----   83 (587)
Q Consensus        13 ~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~-~~~~v~~~~~~~l~~~~~~~~----~~~~----   83 (587)
                      .+++.+.+.+..+|......+..++....| ..|++++|.|.+... ++...+..+..++..+.+...    +.+.    
T Consensus        89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l  167 (960)
T 1wa5_C           89 EIVPLMISLPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEI  167 (960)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence            456777777799999999999999988777 579999999888653 344455566666666554221    1111    


Q ss_pred             -------HhhhhhHHHhh---hcCchh---HHH------HHHHHHHHHHHhhcChhhHh---hhhHHHHHHhhcCC----
Q 007863           84 -------ANVLLPPLETL---CTVEET---CVR------DKAVESLCRIGSQMREQDVV---EHFIPLVKRLAAGE----  137 (587)
Q Consensus        84 -------~~~l~~~l~~l---~~~~~~---~vr------~~a~~~l~~l~~~~~~~~~~---~~ll~~~~~l~~~~----  137 (587)
                             .+.++.++..+   +.+++.   .+|      ..+++++..+...--++.+.   ..+++.+.+.....    
T Consensus       168 ~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~  247 (960)
T 1wa5_C          168 KLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL  247 (960)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence                   11112222222   333211   233      23444444433221122222   33445544433211    


Q ss_pred             ------C-----CcchhhHHhhhhhhccCCCHH---HHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHhh--
Q 007863          138 ------W-----FTARVSSCGLFHVAYPSAPEA---LKTELRTIYRQLCQ-----DDMPMVRRSAATNLGKFAATVEA--  196 (587)
Q Consensus       138 ------~-----~~~r~~a~~l~~~~~~~~~~~---~~~~l~~~l~~l~~-----~~~~~vR~~a~~~l~~l~~~~~~--  196 (587)
                            .     +.++..++..+..+....++.   +...+++.+...+.     ..+..++..+++.+..+++.-..  
T Consensus       248 ~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~  327 (960)
T 1wa5_C          248 EDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFE  327 (960)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHG
T ss_pred             cCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHH
Confidence                  0     123445555555544433332   34455555555443     45678888888888887642111  


Q ss_pred             ----hhhHHHHH-HHHHHhc-----------------------ccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH
Q 007863          197 ----AHLKSEIM-SIFEELT-----------------------QDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN  248 (587)
Q Consensus       197 ----~~~~~~i~-~~l~~l~-----------------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  248 (587)
                          +.+...++ +.+...+                       .++.++.|..|..++..++...+ +...+.+++.+.+
T Consensus       328 ~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~  406 (960)
T 1wa5_C          328 IFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKG  406 (960)
T ss_dssp             GGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHH
T ss_pred             HHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHH
Confidence                12333333 3332221                       11223689999999999998876 4455666777666


Q ss_pred             hcC------CCchHHHHHHHHHHHHHHHHhC-CC-Cccc-----chHHHHH----HhcCCC---hHHHHHHHHHhHHHHH
Q 007863          249 FSQ------DKSWRVRYMVANQLYELCEAVG-PE-PTRS-----DVVPAYV----RLLRDN---EAEVRIAAAGKVTKIC  308 (587)
Q Consensus       249 ~~~------d~~~~vR~~a~~~l~~l~~~~~-~~-~~~~-----~l~~~l~----~~l~d~---~~~vr~~a~~~l~~l~  308 (587)
                      .++      +.+|+.|.+|..+++.++.... .. ....     ++.+.+.    ..+.|+   .+.||..|+.+++.++
T Consensus       407 ~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~  486 (960)
T 1wa5_C          407 FVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFR  486 (960)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTG
T ss_pred             HHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHH
Confidence            665      6789999999999999975421 11 1111     4545443    334666   8999999999999999


Q ss_pred             HhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh----------chH---HHHHhHHHHHHHhcCCCC---h
Q 007863          309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----------GKD---ATIEQLLPIFLSLLKDEF---P  372 (587)
Q Consensus       309 ~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----------~~~---~~~~~l~~~l~~~l~d~~---~  372 (587)
                      ..+.++ +...+++.+.+.+.|++..||..|+.++..++...          ..+   .+.+.+++.+..++....   +
T Consensus       487 ~~~~~~-~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~  565 (960)
T 1wa5_C          487 NQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPE  565 (960)
T ss_dssp             GGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHH
T ss_pred             hhCCHH-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCC
Confidence            987654 46788899998899999999999999999988642          122   234555666666665531   1


Q ss_pred             H--HHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHh----cC-CCcHHHHHHHHHHHHHHHhhChhh---HHHHHHHH
Q 007863          373 D--VRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA----ED-RHWRVRLAIIEYIPLLASQLGVGF---FDDKLGAL  440 (587)
Q Consensus       373 ~--vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~----~~-~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~  440 (587)
                      .  ....+..++..++...+.+.  +...+++.+...+    ++ .+...+..++++++.++...+++.   +.+.++|.
T Consensus       566 ~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~  645 (960)
T 1wa5_C          566 KLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPT  645 (960)
T ss_dssp             HHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            1  33466777777776655321  2233444444332    33 466778788999999988755433   45678888


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHH--hhhcCCccHHHHHHHHHHHHhhcccChHHHH--Hh
Q 007863          441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVL--EMINNPHYLYRMTILQAISLLAPVMGSEITC--SQ  514 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~--~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~--~~  514 (587)
                      +...+.....+....+...++.+.... ..+  ....++|.+.  ..+..+.  .-...+.++..+....+.. +.  +.
T Consensus       646 ~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~-~~~~~~  721 (960)
T 1wa5_C          646 FLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWELKG--NIPAVTRLLKSFIKTDSSI-FPDLVP  721 (960)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCCTT--THHHHHHHHHHHHHHHGGG-CSCSHH
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcCCC--CchhHHHHHHHHHHhChHH-HHHHHH
Confidence            888887776778888888888888754 211  2345677666  4444332  2223444454443322211 11  33


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhc-CCCCccHHHHHHHHH
Q 007863          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS-EDPDVDVRFFATQAL  577 (587)
Q Consensus       515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al  577 (587)
                      ++..+.+++.+...  +..++..++.++..++..   ++...+++.+...+ .+.....+......+
T Consensus       722 ~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~  786 (960)
T 1wa5_C          722 VLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFF  786 (960)
T ss_dssp             HHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHH
Confidence            45555555666543  478999999998887754   44555666666643 333445553333333

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.73  E-value=1.8e-15  Score=165.58  Aligned_cols=565  Identities=11%  Similarity=0.037  Sum_probs=332.2

Q ss_pred             cccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc-
Q 007863            8 LYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE-   82 (587)
Q Consensus         8 ~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~-   82 (587)
                      +..+..++..+.++|++.|..|.+.|..+-+   .+..|..+...+..  +.+.++|..++..|.+....    ++.++ 
T Consensus         6 ~~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~---~p~~w~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~   80 (971)
T 2x1g_F            6 IARLEEAVVSFYRSNSQNQAITHEWLTDAEA---SPQAWQFSWQLMQL--GKSQEVQFFGAITLHSKLMKHWHEVPPENR   80 (971)
T ss_dssp             -----CTHHHHHTSTTTC----CHHHHHTTT---STHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHHHCGGGCCGGGH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc---CHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHccHhhCCHHHH
Confidence            4456777777888899999999888866421   23455555555543  45778999998888765432    22222 


Q ss_pred             --hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC------CCcchhhHHhhhhhhcc
Q 007863           83 --YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE------WFTARVSSCGLFHVAYP  154 (587)
Q Consensus        83 --~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~------~~~~r~~a~~l~~~~~~  154 (587)
                        ....+++.+..... ..+.||.+...++..+++...+ . ++.+++.+.+...++      +...+..+..++..+.+
T Consensus        81 ~~ir~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p-~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E  157 (971)
T 2x1g_F           81 EELKQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG-E-WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE  157 (971)
T ss_dssp             HHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC-C-------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc-c-ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence              23444444444332 3589999999999999998665 3 445666666555432      22344455555554432


Q ss_pred             C----CC--------H---HHHHHHHHHHHHhcCCC-C-------HHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHH
Q 007863          155 S----AP--------E---ALKTELRTIYRQLCQDD-M-------PMVRRSAATNLGKFAAT--VEAAHLKSEIMSIFEE  209 (587)
Q Consensus       155 ~----~~--------~---~~~~~l~~~l~~l~~~~-~-------~~vR~~a~~~l~~l~~~--~~~~~~~~~i~~~l~~  209 (587)
                      .    .+        +   ...+.+++++..++.+. +       +.++..+++++..+...  ++.. ....+++.+..
T Consensus       158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~  236 (971)
T 2x1g_F          158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE  236 (971)
T ss_dssp             HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH
T ss_pred             HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh
Confidence            1    01        0   12345555555554321 1       27899999999988873  4433 55566776555


Q ss_pred             hc----------------ccCchhHHHHHHHHHHHHhcccChh---hhhhchHHHHHH-------hcCCCch---HHHHH
Q 007863          210 LT----------------QDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIVN-------FSQDKSW---RVRYM  260 (587)
Q Consensus       210 l~----------------~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~-------~~~d~~~---~vR~~  260 (587)
                       +                .++++.+|..|++++..+...-...   .....++|.+..       ...+.+.   .....
T Consensus       237 -L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~  315 (971)
T 2x1g_F          237 -VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVH  315 (971)
T ss_dssp             -HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHH
T ss_pred             -hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHH
Confidence             3                1245789999999999988753211   112223333322       2234442   56666


Q ss_pred             HHHHHHHHHHHhC--------CC-----CcccchHHHHHHhcC-----CChHHHHHHHHHhHHHHHHhh-C--------H
Q 007863          261 VANQLYELCEAVG--------PE-----PTRSDVVPAYVRLLR-----DNEAEVRIAAAGKVTKICRIL-N--------P  313 (587)
Q Consensus       261 a~~~l~~l~~~~~--------~~-----~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~-~--------~  313 (587)
                      .++.+..++....        +.     .....+++.+.....     ..+++|+..++..+..+++.. +        .
T Consensus       316 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~  395 (971)
T 2x1g_F          316 IYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHK  395 (971)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHH
Confidence            6777777663211        10     011134455554432     346788999998888877622 1        1


Q ss_pred             -----HHHHHhHHHHHhHhcC---CC-----c-------HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCC----
Q 007863          314 -----ELAIQHILPCVKELSS---DS-----S-------QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD----  369 (587)
Q Consensus       314 -----~~~~~~~~~~l~~~~~---d~-----~-------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----  369 (587)
                           ..+...+++.+...+.   |.     +       ...|.++...+..++..++ +...+.+.+.+...+..    
T Consensus       396 ~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~  474 (971)
T 2x1g_F          396 CWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRH  474 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCC
Confidence                 1222334444433331   11     1       2577888888888887776 44556666666666543    


Q ss_pred             -CChHHHHHHHHHhHHhhhhhchhh--HhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHH
Q 007863          370 -EFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQW  444 (587)
Q Consensus       370 -~~~~vr~~a~~~l~~i~~~~~~~~--~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~  444 (587)
                       .+...+.+++.+++.+++......  ..+.+++.+..+. .|.++.+|..++..++.++..+... .+.+.+++.++..
T Consensus       475 ~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~  554 (971)
T 2x1g_F          475 PTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRG  554 (971)
T ss_dssp             TTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             567899999999999987765432  2334555433333 2568999999999999999877632 3456678888888


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccChH---HHHHhHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSE---ITCSQLLP  517 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~  517 (587)
                      + |  +.|+..|+.++..+++.++...  +.+.++..+.+++..+  +...+...+.+++.++...+.+   .+...+++
T Consensus       555 l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~  631 (971)
T 2x1g_F          555 L-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVS  631 (971)
T ss_dssp             H-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHH
T ss_pred             h-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            8 4  7899999999999998776542  3456666666666663  4678999999999998766522   23334444


Q ss_pred             HHH----hhcCCC--CccHHHHHHHHHHH---HHhhhch---------------HHHHHhHHHHHHHhcCC--CCccHHH
Q 007863          518 VVI----NASKDR--VPNIKFNVAKVLQS---LIPIVDQ---------------SVVEKSIRPCLVELSED--PDVDVRF  571 (587)
Q Consensus       518 ~l~----~~l~d~--~~~vR~~a~~~l~~---l~~~~~~---------------~~~~~~i~~~l~~l~~d--~~~~Vr~  571 (587)
                      .+.    ..++..  ++.-+.....+++.   +...++.               ..+.+.++|.+..++.+  .+..|..
T Consensus       632 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e  711 (971)
T 2x1g_F          632 PCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLE  711 (971)
T ss_dssp             HHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            333    333333  33344444444444   4343321               13456678888876543  3668999


Q ss_pred             HHHHHHHHHHHHhhc
Q 007863          572 FATQALQSKDQVMMS  586 (587)
Q Consensus       572 ~a~~al~~l~~~~~~  586 (587)
                      .+..+++.++..+|.
T Consensus       712 ~~~~~~~~~~~~~~~  726 (971)
T 2x1g_F          712 AACSAMKHAITNLRS  726 (971)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhh
Confidence            999999999888775

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.73  E-value=5.5e-14  Score=153.91  Aligned_cols=563  Identities=9%  Similarity=0.033  Sum_probs=326.0

Q ss_pred             HHHHHHHhcCc------cHHHHHHHhhcHHHHHHHhChh--------------hhhhhhcccccccc----CC-----ch
Q 007863           11 IAVLIDELKND------DIQLRLNSIRRLSTIARALGEE--------------RTRKELIPFLSENN----DD-----DD   61 (587)
Q Consensus        11 ~~~l~~~l~s~------d~~~R~~a~~~l~~~~~~~~~~--------------~~~~~l~p~l~~~~----~~-----~~   61 (587)
                      +..++..++++      ++..+..++..|..+...+...              ...+.+++++.+.+    ++     ..
T Consensus       124 l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~  203 (971)
T 2x1g_F          124 IEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAY  203 (971)
T ss_dssp             --HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             HHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccch
Confidence            55667777664      6678888888888776432100              01123334443322    11     12


Q ss_pred             HHHHHHHHHhccccc--CcCCcchHhhhhhHHHhh----h-----------cCchhHHHHHHHHHHHHHHhhcChh---h
Q 007863           62 EVLLAMAEELGVFIP--YVGGLEYANVLLPPLETL----C-----------TVEETCVRDKAVESLCRIGSQMREQ---D  121 (587)
Q Consensus        62 ~v~~~~~~~l~~~~~--~~~~~~~~~~l~~~l~~l----~-----------~~~~~~vr~~a~~~l~~l~~~~~~~---~  121 (587)
                      +++..+.+++..+..  .++.. ....+++.+..+    .           .++++.+|+.|++++..+...-.++   .
T Consensus       204 ~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~  282 (971)
T 2x1g_F          204 SNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPK  282 (971)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHHHHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHH
T ss_pred             hHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHhhhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHH
Confidence            678888888876554  23322 334555544432    0           1367899999999999998742211   1


Q ss_pred             HhhhhHHHHHH----hh---cCCCC---cchhhHHhhhhhhccCC-----------C---HHHHHHHHHHHHHhcCC---
Q 007863          122 VVEHFIPLVKR----LA---AGEWF---TARVSSCGLFHVAYPSA-----------P---EALKTELRTIYRQLCQD---  174 (587)
Q Consensus       122 ~~~~ll~~~~~----l~---~~~~~---~~r~~a~~l~~~~~~~~-----------~---~~~~~~l~~~l~~l~~~---  174 (587)
                      ....++|.+..    +.   .+++.   ......+.++..+.+..           .   ......+++.+.....+   
T Consensus       283 ~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~  362 (971)
T 2x1g_F          283 TAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGI  362 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCC
Confidence            22223333322    11   22221   33333344443332111           1   12344556666665433   


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHh-------h-------hhhHHHHHHHHHHhcc-cCc--------------hhHHHHHH
Q 007863          175 --DMPMVRRSAATNLGKFAATVE-------A-------AHLKSEIMSIFEELTQ-DDQ--------------DSVRLLAV  223 (587)
Q Consensus       175 --~~~~vR~~a~~~l~~l~~~~~-------~-------~~~~~~i~~~l~~l~~-d~~--------------~~vr~~a~  223 (587)
                        .+..|+..++..+..+++...       .       ..+...+++.+...+. +++              ...|..+.
T Consensus       363 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~  442 (971)
T 2x1g_F          363 YPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDIS  442 (971)
T ss_dssp             TTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHH
Confidence              467889999998888876321       0       1222333443333321 111              14678888


Q ss_pred             HHHHHHhcccChhhhhhchHHHHHHhcCC-----CchHHHHHHHHHHHHHHHHhCCCC--cccchHHHHHHhc-CCChHH
Q 007863          224 EGCGALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRSDVVPAYVRLL-RDNEAE  295 (587)
Q Consensus       224 ~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l-~d~~~~  295 (587)
                      .++..++...+ +...+.+.+.+...+..     .+|..|.+++.+++.++..+....  ....+++.+..+. +|.++.
T Consensus       443 ~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~  521 (971)
T 2x1g_F          443 DTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVK  521 (971)
T ss_dssp             HHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHH
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHH
Confidence            88888887766 34556666666665543     799999999999999987655322  1123455444444 356899


Q ss_pred             HHHHHHHhHHHHHHhhCHH-HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCC--C
Q 007863          296 VRIAAAGKVTKICRILNPE-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKD--E  370 (587)
Q Consensus       296 vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d--~  370 (587)
                      ||..++.+++.++..+... .+...+++.+...+ |  +.|+..|+.++..+++.++..  .+.+.++..+..++..  .
T Consensus       522 vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~  598 (971)
T 2x1g_F          522 LLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRM  598 (971)
T ss_dssp             HHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCC
Confidence            9999999999999987643 45577788877777 3  679999999999998766532  2445555666666665  3


Q ss_pred             ChHHHHHHHHHhHHhhhhhchhhH---hhhhHHHH----HHHhcCC--CcHHHHHHHHHHHHHH---HhhChh-------
Q 007863          371 FPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAI----VELAEDR--HWRVRLAIIEYIPLLA---SQLGVG-------  431 (587)
Q Consensus       371 ~~~vr~~a~~~l~~i~~~~~~~~~---~~~~~~~l----~~~~~~~--~~~vr~~~~~~l~~l~---~~~~~~-------  431 (587)
                      +...+..+..+++.++..++.+..   ...+++.+    ....+..  +...+......++.++   ..++..       
T Consensus       599 ~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~  678 (971)
T 2x1g_F          599 KNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATD  678 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred             ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCccccc
Confidence            578999999999999877653221   12333333    2333332  3334444445544444   333321       


Q ss_pred             --------hHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHHHHH
Q 007863          432 --------FFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTILQAI  499 (587)
Q Consensus       432 --------~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~~~l  499 (587)
                              .+.+.++|.+...+.+  .+..+.+.++.+++.++..+|.++  +.+.+++.+...+.....   ..++..+
T Consensus       679 ~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~  755 (971)
T 2x1g_F          679 QPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---APTLEIS  755 (971)
T ss_dssp             -----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---HHHHHHH
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---hHHHHHH
Confidence                    1234577777777643  367999999999999999887663  334455555544444322   3578888


Q ss_pred             HHhhcccChH--------HHHHhHHHHHHhhcCC-------CCccHHHHHHHHHHHHHhhhchHHH-----HHhHHHHHH
Q 007863          500 SLLAPVMGSE--------ITCSQLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLV  559 (587)
Q Consensus       500 ~~l~~~~~~~--------~~~~~~l~~l~~~l~d-------~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~i~~~l~  559 (587)
                      +.+...+|.+        .+...+...++..+..       ..++++......+..+........+     ...+++...
T Consensus       756 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~  835 (971)
T 2x1g_F          756 KTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQ  835 (971)
T ss_dssp             HHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHH
T ss_pred             HHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence            8888877763        1223333333333333       3788999999999999876554322     345555555


Q ss_pred             HhcCCCCccHHHHHHHHHHHHH
Q 007863          560 ELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       560 ~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      ..+.-+++.....+...+..+.
T Consensus       836 ~~l~~~~~~~~~s~~~fl~~~i  857 (971)
T 2x1g_F          836 RGMTLPESGAIRNSIQFLTHFV  857 (971)
T ss_dssp             HHHTSSCSSHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHH
Confidence            5445566666666666665543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.72  E-value=1.7e-13  Score=150.14  Aligned_cols=565  Identities=12%  Similarity=0.081  Sum_probs=341.8

Q ss_pred             cccHHHHHHH-hcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc
Q 007863            8 LYPIAVLIDE-LKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE   82 (587)
Q Consensus         8 ~~~~~~l~~~-l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~   82 (587)
                      +..+..++.. ..++|++.|..|.+.|..+-+  . +..|..+..++..  +.+.++|..++..|.+....    ++.++
T Consensus        23 ~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~--~-p~~~~~~~~lL~~--~~~~~vr~~aa~~L~~~i~~~w~~l~~~~   97 (963)
T 2x19_B           23 VENVEKALHQLYYDPNIENKNLAQKWLMQAQV--S-PQAWHFSWQLLQP--DKVPEIQYFGASALHIKISRYWSDIPTDQ   97 (963)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--S-TTHHHHHHHHTST--TSCHHHHHHHHHHHHHHHHHCGGGSCGGG
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--C-HHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHhCHHhCCHHH
Confidence            3446677777 446899999999999877643  2 2345555555543  45678999988888765432    22222


Q ss_pred             ---hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-----CCcchhhHHhhhhhhcc
Q 007863           83 ---YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-----WFTARVSSCGLFHVAYP  154 (587)
Q Consensus        83 ---~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-----~~~~r~~a~~l~~~~~~  154 (587)
                         ....+++.+.+.. +..+.+|.+.+.++..+++...++. ++.+++.+.+...++     +...+..+..++..+.+
T Consensus        98 ~~~ir~~ll~~l~~~~-~~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e  175 (963)
T 2x19_B           98 YESLKAQLFTQITRFA-SGSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE  175 (963)
T ss_dssp             HHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence               2234444444322 2358999999999999999865555 456777777766541     22234455555544432


Q ss_pred             ----C-C--------C---HHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHhcccCc
Q 007863          155 ----S-A--------P---EALKTELRTIYRQLCQDDM--PMVRRSAATNLGKFAATVEAA-HLKSEIMSIFEELTQDDQ  215 (587)
Q Consensus       155 ----~-~--------~---~~~~~~l~~~l~~l~~~~~--~~vR~~a~~~l~~l~~~~~~~-~~~~~i~~~l~~l~~d~~  215 (587)
                          . .        .   ....+.+++++...+.+.+  ..++..+++++...+. ++.. .....+++.+.+.+.  +
T Consensus       176 e~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~  252 (963)
T 2x19_B          176 EFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--D  252 (963)
T ss_dssp             HHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--S
T ss_pred             HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--C
Confidence                1 0        0   1245667777777776543  2488888888876655 3321 112566777766664  4


Q ss_pred             hhHHHHHHHHHHHHhcccChhh---hhhchHHHHHH-------hcCCCchHHHHHHHHHHHHHHHHhCCC--------Cc
Q 007863          216 DSVRLLAVEGCGALGKLLEPQD---CVAHILPVIVN-------FSQDKSWRVRYMVANQLYELCEAVGPE--------PT  277 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~-------~~~d~~~~vR~~a~~~l~~l~~~~~~~--------~~  277 (587)
                      +.+|..|++++..+...-....   ....+++.+..       ...+.+.......++.+..++......        ..
T Consensus       253 ~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~  332 (963)
T 2x19_B          253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQS  332 (963)
T ss_dssp             TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHH
Confidence            7789999999999887533211   11222232222       122333344555567666665432110        01


Q ss_pred             ccchHHHHHHhcCC-----ChHHHHHHHHHhHHHHHHhhC-------HH------HHHHhHHHHHhHhcCCC--------
Q 007863          278 RSDVVPAYVRLLRD-----NEAEVRIAAAGKVTKICRILN-------PE------LAIQHILPCVKELSSDS--------  331 (587)
Q Consensus       278 ~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~l~~~~~-------~~------~~~~~~~~~l~~~~~d~--------  331 (587)
                      ...+++.+.....+     .++.++..++..+..+++...       +.      .+...+++.+...+..+        
T Consensus       333 ~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~  412 (963)
T 2x19_B          333 FLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFW  412 (963)
T ss_dssp             HHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTS
T ss_pred             HHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCC
Confidence            12344555554443     345667777777666666321       11      12233444433332211        


Q ss_pred             ------c-HHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc----CCCChHHHHHHHHHhHHhhhhhchh--hHhhhh
Q 007863          332 ------S-QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGID--LLSQSL  398 (587)
Q Consensus       332 ------~-~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~  398 (587)
                            . ...|..+...+..++...+. ...+.+.+.+...+    .+.+...+.+++.+++.+++....+  .+...+
T Consensus       413 ~~de~~~~~~~r~~~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l  491 (963)
T 2x19_B          413 SSDEKEQFRIYRVDISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGL  491 (963)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHH
Confidence                  1 13467777788777766663 34556666776666    6678899999999999999876542  222334


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhc
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG-FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQH  475 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~  475 (587)
                      ++.+.. +.++++.+|..++..++.+++.+... .+.+.+++.+...+.+  +.|+..|+.++..+++.++...  +.+.
T Consensus       492 ~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~  568 (963)
T 2x19_B          492 IGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAAN  568 (963)
T ss_dssp             HHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHH
T ss_pred             HHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            443322 23468899999999999998866422 3455678888888876  7899999999999998766542  3455


Q ss_pred             hHHHHHhhhcC--CccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhc----CC-CCccHHH---HHHHHHHHHH
Q 007863          476 IVPQVLEMINN--PHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINAS----KD-RVPNIKF---NVAKVLQSLI  542 (587)
Q Consensus       476 ~~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l----~d-~~~~vR~---~a~~~l~~l~  542 (587)
                      ++..+..++..  -+...|...+.+++.++...+.+   .+...+++.+...+    +. .++..|.   ..+.+++.++
T Consensus       569 il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~  648 (963)
T 2x19_B          569 IVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLF  648 (963)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            66666666654  24678999999999998877622   24555555554433    22 2444444   5566666666


Q ss_pred             hhhch------------------------HHHHHhHHHHHHHhcC--CCCccHHHHHHHHHHHHHHHhhc
Q 007863          543 PIVDQ------------------------SVVEKSIRPCLVELSE--DPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       543 ~~~~~------------------------~~~~~~i~~~l~~l~~--d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      ..++.                        ..+.+.++|.+.+++.  -.+..+...+..+++.+...+|.
T Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~  718 (963)
T 2x19_B          649 TTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD  718 (963)
T ss_dssp             HHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcc
Confidence            65431                        1345667777766542  23568999999999988877663

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.71  E-value=1.4e-12  Score=142.94  Aligned_cols=555  Identities=13%  Similarity=0.073  Sum_probs=324.2

Q ss_pred             ccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCC------chHHHHHHHHHhccccc----C-c--------CC-
Q 007863           21 DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD------DDEVLLAMAEELGVFIP----Y-V--------GG-   80 (587)
Q Consensus        21 ~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~------~~~v~~~~~~~l~~~~~----~-~--------~~-   80 (587)
                      .++.+|......+..+++...|+. |+.+++.+.+....      ++..+..+...+..+.+    . .        .. 
T Consensus       115 ~~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~  193 (963)
T 2x19_B          115 GSKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTS  193 (963)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CC
T ss_pred             CCHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHH
Confidence            468899999999999998877754 88888887764432      32233333333222211    1 0        00 


Q ss_pred             -cchHhhhhhHHHhhhcCch--hHHHHHHHHHHHHHHhhcChhh-HhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCC
Q 007863           81 -LEYANVLLPPLETLCTVEE--TCVRDKAVESLCRIGSQMREQD-VVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA  156 (587)
Q Consensus        81 -~~~~~~l~~~l~~l~~~~~--~~vr~~a~~~l~~l~~~~~~~~-~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~  156 (587)
                       ....+.+++++..++.+.+  ..++..+++++..... ++... ....+++.+.+...  .+..+..++..+..+....
T Consensus       194 l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~  270 (963)
T 2x19_B          194 LAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQP  270 (963)
T ss_dssp             SGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHccc
Confidence             1234566677766665432  2478888888876555 33211 12456676666553  4566777877777766543


Q ss_pred             C-H---HHHHHHHHHHHHh-------cCCCCHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHhccc----
Q 007863          157 P-E---ALKTELRTIYRQL-------CQDDMPMVRRSAATNLGKFAATVEA--------AHLKSEIMSIFEELTQD----  213 (587)
Q Consensus       157 ~-~---~~~~~l~~~l~~l-------~~~~~~~vR~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~l~~d----  213 (587)
                      . +   .....+++.+...       ..+.+.......++.+..++.....        ......+++.+.....+    
T Consensus       271 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  350 (963)
T 2x19_B          271 DAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY  350 (963)
T ss_dssp             TGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCT
T ss_pred             ccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCC
Confidence            2 1   2333333333321       2334556666777777776654321        12223455555555553    


Q ss_pred             -CchhHHHHHHHHHHHHhcccC-------h------hhhhhchHHHHHHhcCCC--------------ch-HHHHHHHHH
Q 007863          214 -DQDSVRLLAVEGCGALGKLLE-------P------QDCVAHILPVIVNFSQDK--------------SW-RVRYMVANQ  264 (587)
Q Consensus       214 -~~~~vr~~a~~~l~~l~~~~~-------~------~~~~~~l~~~l~~~~~d~--------------~~-~vR~~a~~~  264 (587)
                       .++.++..+...+..+.+...       +      ......+++.+...+..+              ++ ..|..+..+
T Consensus       351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~  430 (963)
T 2x19_B          351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT  430 (963)
T ss_dssp             TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence             355667777777776665321       0      112223344433333211              11 347778888


Q ss_pred             HHHHHHHhCCCCcccchHHHHHHhc----CCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHH
Q 007863          265 LYELCEAVGPEPTRSDVVPAYVRLL----RDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSA  338 (587)
Q Consensus       265 l~~l~~~~~~~~~~~~l~~~l~~~l----~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~  338 (587)
                      +..++...+.. ..+.+.+.+...+    .+.+|..|++++.+++.+++.+...  .+...+++.+..+. ++++.||..
T Consensus       431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~-~~~~~vr~~  508 (963)
T 2x19_B          431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRIS-ISNVQLADT  508 (963)
T ss_dssp             HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSC-CCSHHHHHH
T ss_pred             HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCC-CCcHHHHHH
Confidence            88877766522 2233455555555    6678999999999999999876542  34456666555444 458889999


Q ss_pred             HHHHHHhhhhhhch-HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcC--CCcHH
Q 007863          339 LATVIMGMAPILGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED--RHWRV  413 (587)
Q Consensus       339 a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~--~~~~v  413 (587)
                      ++.+++.++..+.. ..+.+.+++.+...+.+  +.|+..|+.++..++...+..  .+.+.++..+..++..  -+...
T Consensus       509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~  586 (963)
T 2x19_B          509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQ  586 (963)
T ss_dssp             HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHH
Confidence            99999999987653 35677888888888866  899999999999999765532  2234555555566654  35678


Q ss_pred             HHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHc----CC-CchHHHH---HHHHHHHHHHHHhChh------------
Q 007863          414 RLAIIEYIPLLASQLGVGFFD---DKLGALCMQWL----KD-KVYSIRD---AAANNVKRLAEEFGPD------------  470 (587)
Q Consensus       414 r~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l----~d-~~~~vr~---~a~~~l~~l~~~~~~~------------  470 (587)
                      |..++++++.++...+.+...   +.+++.+...+    .. .+.+.+.   ..+.+++.+++.++..            
T Consensus       587 ~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~  666 (963)
T 2x19_B          587 CMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELR  666 (963)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccc
Confidence            899999999988766532222   33443333332    22 2344443   5566677777765521            


Q ss_pred             ------------hhhhchHHHHHhhhc--CCccHHHHHHHHHHHHhhcccChH---------------------------
Q 007863          471 ------------WAMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE---------------------------  509 (587)
Q Consensus       471 ------------~~~~~~~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~---------------------------  509 (587)
                                  .+.+.++|.+...+.  ..+..+++.++.+++.+...+|..                           
T Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l  746 (963)
T 2x19_B          667 KLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDL  746 (963)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHH
Confidence                        023445555444432  123456666666666544333211                           


Q ss_pred             ---------------HHH----HhHHHHHHhhcC-C--CCccHHHHHHHHHHHHHhhhchHHH-----HHhHHHHHHHhc
Q 007863          510 ---------------ITC----SQLLPVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSVV-----EKSIRPCLVELS  562 (587)
Q Consensus       510 ---------------~~~----~~~l~~l~~~l~-d--~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~i~~~l~~l~  562 (587)
                                     ...    +.++..++..+. +  ..+++|..+...+..+........+     ...+++.+...+
T Consensus       747 ~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l  826 (963)
T 2x19_B          747 TRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLAL  826 (963)
T ss_dssp             HHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHc
Confidence                           001    111111121221 2  3578888888888888766544321     455667777777


Q ss_pred             CCCCccHHHHHHHHHHHHHHH
Q 007863          563 EDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       563 ~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      ..+++++...+.+.+..+.+.
T Consensus       827 ~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          827 KFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHhc
Confidence            788888888888888777654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.70  E-value=6.2e-16  Score=139.66  Aligned_cols=186  Identities=16%  Similarity=0.195  Sum_probs=143.5

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhChhh
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGPDW  471 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~~~  471 (587)
                      ..+-+.+.+.+.+.+|+.|..++..+..+....+.   .. ...+++.+...+. |.+..||..|+.+++.++..+|..+
T Consensus        14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~   92 (242)
T 2qk2_A           14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF   92 (242)
T ss_dssp             GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH
Confidence            34445566777888888888888888888765321   12 2467777888884 8888888888888888888877654


Q ss_pred             --hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch--
Q 007863          472 --AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ--  547 (587)
Q Consensus       472 --~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--  547 (587)
                        +...++|.+.+.+.|++..+|.++..++..+....+    .+.++|.+...++++++.+|..++.+++.+....++  
T Consensus        93 ~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           93 SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence              446788888888888888888888888888887654    356778888888888888888888888887765542  


Q ss_pred             --HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          548 --SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       548 --~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                        ..+...++|.|.++++|++++||..|..+++.++..+|+
T Consensus       169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~  209 (242)
T 2qk2_A          169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD  209 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred             ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence              244567888888888888888888888888888888774

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.69  E-value=1.4e-15  Score=137.37  Aligned_cols=196  Identities=15%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC--CCcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhhC
Q 007863          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRILN  312 (587)
Q Consensus       236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      .+....+.+.+.+.++|.+|..|..++..|..++...+.  ......+++.+...+ +|.+..||..|+.+++.++..++
T Consensus        10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~   89 (242)
T 2qk2_A           10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA   89 (242)
T ss_dssp             BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred             ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence            334445555566677788888888888888887765332  111235666777777 37777777777777777776665


Q ss_pred             HH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc
Q 007863          313 PE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (587)
Q Consensus       313 ~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  390 (587)
                      +.  .+...++|.+...+.|++..||.++..++..++...+    .+.++|.+...+++.++.+|..++..++.+....+
T Consensus        90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~  165 (242)
T 2qk2_A           90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ  165 (242)
T ss_dssp             GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            43  3445566666666666666666666666665554332    12334444444444444444444444444433322


Q ss_pred             hhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863          391 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  470 (587)
Q Consensus       391 ~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                      ++.                                  . ...+.+.++|.+..++.|++++||.+|..+++.++..+|.+
T Consensus       166 ~~~----------------------------------~-~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~  210 (242)
T 2qk2_A          166 PTA----------------------------------L-NKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK  210 (242)
T ss_dssp             GGG----------------------------------C-CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CCC----------------------------------c-cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence            110                                  0 01233455666666666666666666666666666666654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.68  E-value=2.4e-15  Score=132.92  Aligned_cols=187  Identities=19%  Similarity=0.204  Sum_probs=121.8

Q ss_pred             hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH  319 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      +..++.+...+.|+++.+|..++..|+.+.        ....++.+..+++|+++.||..++.+|+.+..        +.
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            445666666777777777777777777643        13466777777777777777777777776642        33


Q ss_pred             HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhH
Q 007863          320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (587)
Q Consensus       320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~  399 (587)
                      .++.+.++++|+++.||..++.+++.+..        +..+|.+..+++|+++.||..++.+|+.+..        +..+
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  145 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  145 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence            45666666777777777777777776642        2345666667777777777777777776642        2456


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  466 (587)
Q Consensus       400 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  466 (587)
                      |.+..++.|+++.+|..++..++.+..        +...+.+...+.|+++.||..|..+|+.+...
T Consensus       146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            666666777777777777777665532        33555666666677777777777777766543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.67  E-value=4.6e-15  Score=129.96  Aligned_cols=183  Identities=22%  Similarity=0.249  Sum_probs=93.7

Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccc
Q 007863          201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSD  280 (587)
Q Consensus       201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~  280 (587)
                      +...+.+.++++|+++.+|..|+..|+.+..        +..++.+...+.|+++.+|..++..|+.+.        ...
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------~~~   76 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DER   76 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CGG
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHH
Confidence            3344445555555555555555555554432        234444555555555555555555555442        123


Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  360 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  360 (587)
                      .++.+..+++|+++.||..|+.+|+.+..        +..++.+.++++|+++.||..++.+++.+..        +..+
T Consensus        77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  140 (201)
T 3ltj_A           77 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  140 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHH
Confidence            45555555555555555555555555432        2234445555555555555555555555531        2234


Q ss_pred             HHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHH
Q 007863          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPL  423 (587)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~  423 (587)
                      +.+..+++|+++.||..++.+|+.+..        +..++.+..++.|+++.+|..+.+.+..
T Consensus       141 ~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          141 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  195 (201)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            455555555555555555555555421        2344445555555555555555555443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.67  E-value=3.7e-15  Score=131.73  Aligned_cols=185  Identities=22%  Similarity=0.234  Sum_probs=131.8

Q ss_pred             HHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchH
Q 007863          203 IMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV  282 (587)
Q Consensus       203 i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~  282 (587)
                      .++.+..+++|+++.+|..++..|+.+..        +..++.+...+.|+++.+|..++.+|+.+.        ....+
T Consensus        20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------~~~~~   83 (211)
T 3ltm_A           20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------DERAV   83 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------CHHHH
Confidence            44555566777778888888887776543        356677777777888888888888877653        23467


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHH
Q 007863          283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPI  362 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  362 (587)
                      +.+..+++|+++.||..++.+|+.++.        +..++.+.++++|+++.||..++.+++.+..        +..++.
T Consensus        84 ~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~  147 (211)
T 3ltm_A           84 EPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEP  147 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHH
Confidence            777778888888888888888877743        3456777777788888888888888877752        234567


Q ss_pred             HHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          363 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       363 l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                      +..+++|+++.||..++.+|+.+..        +..++.+..+++|+++.+|..+.+.+..+...
T Consensus       148 L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          148 LIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            7777788888888888888887743        35677777777788888888888877766544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.67  E-value=4.1e-15  Score=130.30  Aligned_cols=186  Identities=19%  Similarity=0.207  Sum_probs=142.2

Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHH
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ  318 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  318 (587)
                      .+...+.+.+.++|+++.+|..|+..|+.+.        ....++.+.++++|+++.+|..++.+|+.+..        +
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~   75 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRAAADALGQIGD--------E   75 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------G
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------H
Confidence            4556777888888888999998888888653        23567888888888888888888888887743        3


Q ss_pred             hHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863          319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       319 ~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~  398 (587)
                      ..++.+.++++|+++.||..++.+++.+..        +..++.+..+++|+++.||..++.+|+.+..        +..
T Consensus        76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~  139 (201)
T 3ltj_A           76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERA  139 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHH
Confidence            456777778888888888888888887752        2355677778888888888888888888753        356


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLA  464 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~  464 (587)
                      ++.+..++.|+++.+|..++..++.+..        +...+.+...+.|+++.||..|..+|+.+-
T Consensus       140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          140 VEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            7777888888888888888888877632        345666777778888888888888887653

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.64  E-value=1.1e-11  Score=136.33  Aligned_cols=510  Identities=9%  Similarity=0.043  Sum_probs=306.3

Q ss_pred             CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc
Q 007863            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE   82 (587)
Q Consensus         7 ~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~   82 (587)
                      ++..+..++..+.++++..|..|.+.|...-+  .| ..+..+...+..  +.+.++|..++..|.+....    ++.+.
T Consensus        14 ~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~--~p-~~~~~l~~iL~~--s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~   88 (1049)
T 3m1i_C           14 DIALLDQVVSTFYQGSGVQQKQAQEILTKFQD--NP-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDH   88 (1049)
T ss_dssp             CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--ST-TGGGGHHHHHHH--CSCHHHHHHHHHHHHHHHHHTGGGSCHHH
T ss_pred             cHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh--Cc-hHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhhCccCCHHH
Confidence            34457788888888888899999999977633  22 345555555543  34778998888888765432    22111


Q ss_pred             ---hHhhhhhHHHhhhcCc-----hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc
Q 007863           83 ---YANVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP  154 (587)
Q Consensus        83 ---~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~  154 (587)
                         ....++..+.....++     ++.+|.+.+.++..+++.-.++. ++.+++.+.+.... ....+..+..++..+  
T Consensus        89 ~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-Wp~ll~~L~~~~~~-~~~~~~~~l~~L~~l--  164 (1049)
T 3m1i_C           89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-WPEFIPELIGSSSS-SVNVCENNMIVLKLL--  164 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-CTTHHHHHHHHHTT-CHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHHcc-ChHHHHHHHHHHHHH--
Confidence               1233333333332222     47899999999999998855543 34566666665542 112222223332221  


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhccc
Q 007863          155 SAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLL  233 (587)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~  233 (587)
                                .+.+.....+.-..-|..-.+  ..+..      ..+.+++.+...+++ .+..++..+++++..+....
T Consensus       165 ----------~eev~~~~~~~~~~~r~~~lk--~~l~~------~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi  226 (1049)
T 3m1i_C          165 ----------SEEVFDFSAEQMTQAKALHLK--NSMSK------EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI  226 (1049)
T ss_dssp             ----------HHHHHTSCTTTSCHHHHHHHH--HHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred             ----------HHHHHHhcchhhhhHHHHHHH--HHHHH------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence                      111111111111111211111  01111      123344555544443 34678899999998877766


Q ss_pred             Chhh-hhhchHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhCCCC---cccc-------hHHHHHH--------------
Q 007863          234 EPQD-CVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEP---TRSD-------VVPAYVR--------------  287 (587)
Q Consensus       234 ~~~~-~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~-------l~~~l~~--------------  287 (587)
                      +... ..+.+++.+.+ ++  .++.+|..|+++|..++..--+..   ....       ++..+..              
T Consensus       227 ~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~  304 (1049)
T 3m1i_C          227 PYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA  304 (1049)
T ss_dssp             CTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred             CHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhc
Confidence            6422 33456666653 33  268899999999998876411111   0011       1221111              


Q ss_pred             hcCCChHHHHHHHHHhHHHHHHhhCH--------HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhh----c----
Q 007863          288 LLRDNEAEVRIAAAGKVTKICRILNP--------ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPIL----G----  351 (587)
Q Consensus       288 ~l~d~~~~vr~~a~~~l~~l~~~~~~--------~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~----~----  351 (587)
                      ..+|.+.+.....++.+..++.....        ......+++.+......++..++..++..+..++...    .    
T Consensus       305 ~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~  384 (1049)
T 3m1i_C          305 NANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHI  384 (1049)
T ss_dssp             HTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGG
T ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHH
Confidence            12455667766777777666543211        1233556777777777778899999998888877622    1    


Q ss_pred             hHHHHHhHHHHHHHhcCCC-------------------Ch---HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc--
Q 007863          352 KDATIEQLLPIFLSLLKDE-------------------FP---DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE--  407 (587)
Q Consensus       352 ~~~~~~~l~~~l~~~l~d~-------------------~~---~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~--  407 (587)
                      ...+...+++.+...+.-+                   +.   ..|..+...|..++... .....+.+.+.+...+.  
T Consensus       385 ~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~  463 (1049)
T 3m1i_C          385 YEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLN-VIDTEEIMISKLARQIDGS  463 (1049)
T ss_dssp             GHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHhCCC
Confidence            1234455666666544211                   10   34556666777776443 34444667777777665  


Q ss_pred             CCCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHhChh-hhhhchHH
Q 007863          408 DRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVP  478 (587)
Q Consensus       408 ~~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~  478 (587)
                      ..+|+.|.+++..++.++..++..   .+.+.+++.+..+..     |+.+.+|..++.+++.+.+.+... .+...+++
T Consensus       464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~  543 (1049)
T 3m1i_C          464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL  543 (1049)
T ss_dssp             SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            478999999999999887665443   234556666655432     345667767889999887755432 24567888


Q ss_pred             HHHhhhcCCccHHHHHHHHHHHHhhcccChH----------HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863          479 QVLEMINNPHYLYRMTILQAISLLAPVMGSE----------ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       479 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  546 (587)
                      .+++.+.+++..+|..|+.++..+++.++..          .+.+.++..+...+.+....-+....++++.++...+
T Consensus       544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            8888888989999999999999999877654          3466777777777777666667888999999987766

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.63  E-value=7e-13  Score=131.80  Aligned_cols=344  Identities=15%  Similarity=0.147  Sum_probs=239.7

Q ss_pred             hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH
Q 007863          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE  314 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  314 (587)
                      +...-+|.+..++.+.+..++..|+.+|..++..-..   .......+|.|++++++.+.+++..|+.+|..++..-+.+
T Consensus        45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4455677888888888888888888888887742100   1112346899999999999999999999999987631122


Q ss_pred             ----HHHHhHHHHHhHhcCC-CcHHHHHHHHHHHHhhhhhhc-hHHHHHhHHHHHHHhc------------------CCC
Q 007863          315 ----LAIQHILPCVKELSSD-SSQHVRSALATVIMGMAPILG-KDATIEQLLPIFLSLL------------------KDE  370 (587)
Q Consensus       315 ----~~~~~~~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l------------------~d~  370 (587)
                          ......+|.+.+++.+ .+..++..++.+|..++..-. +..+....+|.+..++                  ...
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~  204 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE  204 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence                2223467888888875 578889998888888876432 2223344567776654                  123


Q ss_pred             ChHHHHHHHHHhHHhhhhhc--hhhHh--hhhHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhCh----------
Q 007863          371 FPDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLGV----------  430 (587)
Q Consensus       371 ~~~vr~~a~~~l~~i~~~~~--~~~~~--~~~~~~l~~~~~------~~~~~vr~~~~~~l~~l~~~~~~----------  430 (587)
                      ++.|+..++.+|..++..-.  ...+.  ..+++.+..++.      +.+.+....++..|..++.....          
T Consensus       205 d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~  284 (584)
T 3l6x_A          205 WESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE  284 (584)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred             cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence            57999999999999875421  11111  244555655553      35667777787777766643210          


Q ss_pred             -----------------hh-HHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhCh---h---hh-hhchHHHHHhhh
Q 007863          431 -----------------GF-FDDKLGALCMQWLK-DKVYSIRDAAANNVKRLAEEFGP---D---WA-MQHIVPQVLEMI  484 (587)
Q Consensus       431 -----------------~~-~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~~---~---~~-~~~~~~~l~~~l  484 (587)
                                       +. +....++.++.+++ ..+..+++.|+.+|..++..-+.   .   .+ ....+|.|.+++
T Consensus       285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL  364 (584)
T 3l6x_A          285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL  364 (584)
T ss_dssp             -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred             hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence                             00 12345677778875 45789999999999999742111   1   11 256799999999


Q ss_pred             cCCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCC--------CccHHHHHHHHHHHHHhhhch---HHHHH
Q 007863          485 NNPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDR--------VPNIKFNVAKVLQSLIPIVDQ---SVVEK  552 (587)
Q Consensus       485 ~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~--------~~~vR~~a~~~l~~l~~~~~~---~~~~~  552 (587)
                      .+++..++..++.+|.+++..... ..+....+|.++.+|.+.        +..++..++.+|++++..-..   .....
T Consensus       365 ~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~  444 (584)
T 3l6x_A          365 TNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET  444 (584)
T ss_dssp             GCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence            999999999999999999975543 345678899999999876        357888999999988743211   24445


Q ss_pred             hHHHHHHHhcCCC--CccHHHHHHHHHHHHH
Q 007863          553 SIRPCLVELSEDP--DVDVRFFATQALQSKD  581 (587)
Q Consensus       553 ~i~~~l~~l~~d~--~~~Vr~~a~~al~~l~  581 (587)
                      ..+|.|..++.+.  .+.++..|..+|..+.
T Consensus       445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~  475 (584)
T 3l6x_A          445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIW  475 (584)
T ss_dssp             THHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence            7899999988775  7889999999999876

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.62  E-value=4.3e-11  Score=123.37  Aligned_cols=309  Identities=14%  Similarity=0.064  Sum_probs=190.9

Q ss_pred             HHHHHHhcC---CCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh--------HHHHHHHHHhHHHHHHhh
Q 007863          243 LPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE--------AEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       243 ~~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~a~~~l~~l~~~~  311 (587)
                      +..+.+.+.   ..++.+|..|+-.+|-+....+     ...+..+...+.+.+        +.+|.+|+..||-+.-..
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~-----~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS  468 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG-----RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS  468 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT-----HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence            444444443   4566777777777776544322     124455555554332        567777777777654433


Q ss_pred             CHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch
Q 007863          312 NPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  391 (587)
Q Consensus       312 ~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~  391 (587)
                      +.+.    +++.+...+.|.+..+|..++.+++.+.-.-+.....+.++..+   ..+.+..+|..++.+|+.+.  +|.
T Consensus       469 ~~ee----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~---~e~~~e~vrR~aalgLGll~--~g~  539 (963)
T 4ady_A          469 ANIE----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYS---QETQHGNITRGLAVGLALIN--YGR  539 (963)
T ss_dssp             CCHH----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHT--TTC
T ss_pred             CCHH----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH---hccCcHHHHHHHHHHHHhhh--CCC
Confidence            3333    34445555555566677777777776643333333333333333   34566778888888887663  333


Q ss_pred             hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh
Q 007863          392 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  471 (587)
Q Consensus       392 ~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  471 (587)
                      ++.   +-+.+..+..+.+|-+|..++-+++.-....|....   +-.++..+..|.+..||..|+.+|+.+.  +|.  
T Consensus       540 ~e~---~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~~~d~~d~VRraAViaLGlI~--~g~--  609 (963)
T 4ady_A          540 QEL---ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVAVSDSNDDVRRAAVIALGFVL--LRD--  609 (963)
T ss_dssp             GGG---GHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSS--
T ss_pred             hHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHhccCCcHHHHHHHHHHHHhhc--cCC--
Confidence            321   222223344578888888887777655444454332   2334444456788889999999988765  232  


Q ss_pred             hhhchHHHHHh-hhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--
Q 007863          472 AMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       472 ~~~~~~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--  548 (587)
                        +..+|.++. +..+.++.+|.++..+++.++..-+.    ..++..+..+.+|++..||.+|+.+|+.+...-.+.  
T Consensus       610 --~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~  683 (963)
T 4ady_A          610 --YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLN  683 (963)
T ss_dssp             --CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTC
T ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccc
Confidence              234566665 45567889999999999988754443    356667778889999999999999999987543222  


Q ss_pred             HHHHhHHHHHHHhcCC--CCccHHHHHHHHHHHHH
Q 007863          549 VVEKSIRPCLVELSED--PDVDVRFFATQALQSKD  581 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~d--~~~~Vr~~a~~al~~l~  581 (587)
                      +....++..|.+...|  .|+.+|..|.-|.+-+.
T Consensus       684 ~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~  718 (963)
T 4ady_A          684 PQVADINKNFLSVITNKHQEGLAKFGACVAQGIMN  718 (963)
T ss_dssp             TTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh
Confidence            1334556666665555  56778888888888765

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.61  E-value=6.4e-12  Score=138.16  Aligned_cols=488  Identities=8%  Similarity=0.020  Sum_probs=298.5

Q ss_pred             hhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhc----cCCCHHHH
Q 007863           86 VLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY----PSAPEALK  161 (587)
Q Consensus        86 ~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~----~~~~~~~~  161 (587)
                      .+...+..+. +++...|+.|-+.|..+-+.-   .....+..++..   +.+..+|..|+..+....    ...+++.+
T Consensus        17 ~l~~~l~~~~-~p~~~~r~~Ae~~L~~~~~~p---~~~~~l~~iL~~---s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~   89 (1049)
T 3m1i_C           17 LLDQVVSTFY-QGSGVQQKQAQEILTKFQDNP---DAWQKADQILQF---STNPQSKFIALSILDKLITRKWKLLPNDHR   89 (1049)
T ss_dssp             HHHHHHHHHH-HCCHHHHHHHHHHHHHHHHST---TGGGGHHHHHHH---CSCHHHHHHHHHHHHHHHHHTGGGSCHHHH
T ss_pred             HHHHHHHHHh-CCChHHHHHHHHHHHHHHhCc---hHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhhCccCCHHHH
Confidence            3444444433 334457888887887764431   223334444322   345667777776665542    33455544


Q ss_pred             HH----HHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          162 TE----LRTIYRQLCQDD-----MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       162 ~~----l~~~l~~l~~~~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      ..    +++.+.....++     ++.+|...+.++..++..--. ..++.+++.+...++ .++..+..+...|..+.+.
T Consensus        90 ~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee  167 (1049)
T 3m1i_C           90 IGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEE  167 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence            44    444444333222     478999999999999887433 456777777777776 4455677777777777654


Q ss_pred             cCh---h---------------hhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHH-hcCC
Q 007863          233 LEP---Q---------------DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVR-LLRD  291 (587)
Q Consensus       233 ~~~---~---------------~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~-~l~d  291 (587)
                      +..   +               ...+.+++.+...+.+ .+..++..+++++..+....+... ..+.+++.+.+ ++. 
T Consensus       168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~-  246 (1049)
T 3m1i_C          168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT-  246 (1049)
T ss_dssp             HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH-
T ss_pred             HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC-
Confidence            321   0               0122344444554443 467899999999887765443211 12346666663 332 


Q ss_pred             ChHHHHHHHHHhHHHHHHhh-CHH-----HHH----HhHHHHHhH--------------hcCCCcHHHHHHHHHHHHhhh
Q 007863          292 NEAEVRIAAAGKVTKICRIL-NPE-----LAI----QHILPCVKE--------------LSSDSSQHVRSALATVIMGMA  347 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~-~~~-----~~~----~~~~~~l~~--------------~~~d~~~~vr~~a~~~l~~l~  347 (587)
                       ++++|..|+.+|..+...- ++.     ...    ..++..+..              ...+.++.+....++.+..++
T Consensus       247 -~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~  325 (1049)
T 3m1i_C          247 -SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYL  325 (1049)
T ss_dssp             -SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHH
T ss_pred             -CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHH
Confidence             5789999999999988652 221     111    112222211              113445666667777776655


Q ss_pred             hhhc--------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh----c-hh---hHhhhhHHHHHHHhc---C
Q 007863          348 PILG--------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----G-ID---LLSQSLLPAIVELAE---D  408 (587)
Q Consensus       348 ~~~~--------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~----~-~~---~~~~~~~~~l~~~~~---~  408 (587)
                      ....        .......+++.+......++.+++..++..+..+++.+    . ..   .+...+++.+...+.   |
T Consensus       326 ~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed  405 (1049)
T 3m1i_C          326 ARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEE  405 (1049)
T ss_dssp             HHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4321        12234456777777777778899999988887777632    1 11   122334444444331   1


Q ss_pred             CC-------------------cHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHh
Q 007863          409 RH-------------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEF  467 (587)
Q Consensus       409 ~~-------------------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~  467 (587)
                      ..                   |..|..+...+..++.. +.....+.+.+.+.+.+.  ..+|..|++++.+++.+...+
T Consensus       406 ~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~-~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~  484 (1049)
T 3m1i_C          406 VLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTM  484 (1049)
T ss_dssp             CCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSS
T ss_pred             eeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhccc
Confidence            11                   24466677777777644 344445666677766665  478999999999999887655


Q ss_pred             Chh---hhhhchHHHHHhhhc-----CCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863          468 GPD---WAMQHIVPQVLEMIN-----NPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       468 ~~~---~~~~~~~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (587)
                      +..   .+...+++.+..+..     ++...+|..++++++.+++.+.. ..+...+++.++..+.|+++.||..|+.++
T Consensus       485 ~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al  564 (1049)
T 3m1i_C          485 SEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTF  564 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            543   123445555544321     34566676788999988875443 246788899999999999999999999999


Q ss_pred             HHHHhhhchH----------HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          539 QSLIPIVDQS----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       539 ~~l~~~~~~~----------~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      ..++...+..          ++.+.++..+..+..+.+.+-+....+|++.+.+..+
T Consensus       565 ~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          565 IKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            9999876543          3456666666677777666667788888888876654

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.60  E-value=3.4e-13  Score=133.49  Aligned_cols=147  Identities=12%  Similarity=0.061  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHHhCh-------hhh-hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863          435 DKLGALCMQWLKD-KVYSIRDAAANNVKRLAEEFGP-------DWA-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       435 ~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~-------~~~-~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  505 (587)
                      ...++.+..++.+ .++.+++.|+.+|..++..-+.       ..+ ....+|.+.+++.+++..+|..|++++.+++..
T Consensus       282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            3456666666654 4689999999999999753222       112 256899999999999999999999999999874


Q ss_pred             cCh-HHHHHhHHHHHHhhcCCCCc------cHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhcCCC-CccHHHHHH
Q 007863          506 MGS-EITCSQLLPVVINASKDRVP------NIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELSEDP-DVDVRFFAT  574 (587)
Q Consensus       506 ~~~-~~~~~~~l~~l~~~l~d~~~------~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~~d~-~~~Vr~~a~  574 (587)
                      -.. ..+....+|.++.++.+.++      .+...++.+|+.+...-+..   ......++.|.+++... +.+++..|.
T Consensus       362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~  441 (457)
T 1xm9_A          362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR  441 (457)
T ss_dssp             GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence            322 22456788999999988654      57778899999887543221   22346789999988877 889999999


Q ss_pred             HHHHHHH
Q 007863          575 QALQSKD  581 (587)
Q Consensus       575 ~al~~l~  581 (587)
                      ..|..+.
T Consensus       442 ~~L~~~~  448 (457)
T 1xm9_A          442 LLLSDMW  448 (457)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
Confidence            9987654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.60  E-value=3.1e-12  Score=129.02  Aligned_cols=480  Identities=9%  Similarity=0.061  Sum_probs=300.1

Q ss_pred             cCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhh----cCCCCcchhhHHhhhhhhccCCCHH-----HHHHHHH
Q 007863           96 TVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA----AGEWFTARVSSCGLFHVAYPSAPEA-----LKTELRT  166 (587)
Q Consensus        96 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~----~~~~~~~r~~a~~l~~~~~~~~~~~-----~~~~l~~  166 (587)
                      ....+.+|..+.-.+.++.+..+ +.+...+..++..+.    .+-.......++.++..+++..++-     ..+.+.+
T Consensus       180 ~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~  258 (778)
T 3opb_A          180 RISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSK  258 (778)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHH
T ss_pred             ccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHH
Confidence            35677888888888877776655 455666666666544    2212233444556666666665432     1234455


Q ss_pred             HHHHhc-CCCCHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhhhhchH
Q 007863          167 IYRQLC-QDDMPMVRRSAATNLGKFAATVE-AAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDCVAHIL  243 (587)
Q Consensus       167 ~l~~l~-~~~~~~vR~~a~~~l~~l~~~~~-~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~  243 (587)
                      .+.... +..+..+..++.+.|...+..-. .+.+.....+.+.+.+++  +.+|..|.-+|.+++..-.. ..-...+.
T Consensus       259 ~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La  336 (778)
T 3opb_A          259 LFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS  336 (778)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred             HHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence            555544 44566777777777766543211 133445566778778765  57888899999888865433 22234578


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHHhC--CCC-cccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEP-TRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAIQH  319 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~-~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      +.+.+.+.+.+...|..|++.|..+...-.  ... ....++..++.++++ .+..+-..++..|.++............
T Consensus       337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~  416 (778)
T 3opb_A          337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX  416 (778)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence            888888887666669999999887642100  000 012467888888875 5667888888888888876442100000


Q ss_pred             HHHHHhHhcCCCcHHH------HHHHHHHHHh-hhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh
Q 007863          320 ILPCVKELSSDSSQHV------RSALATVIMG-MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       320 ~~~~l~~~~~d~~~~v------r~~a~~~l~~-l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~  392 (587)
                      =+..++++.+...+..      ...... +.. -...    .....++|.+..+++..++.+|..+++++..++..-...
T Consensus       417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~-v~~~~~~~----l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R  491 (778)
T 3opb_A          417 XXXXXXXXXXXXXPAADKVGAEKAAKED-ILLFNEKY----ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFI  491 (778)
T ss_dssp             ------------------CCTHHHHHHH-HHHHHHHH----TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred             hhhhhhhhccccCcccCcccccccchHH-HHHHHHHH----HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH
Confidence            1122222221110100      000000 000 0000    112347888999999999999999999999998653221


Q ss_pred             --hHhhhhHHHHHHHhcCCCcH---HHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHcCC-Cch-----------
Q 007863          393 --LLSQSLLPAIVELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLKD-KVY-----------  450 (587)
Q Consensus       393 --~~~~~~~~~l~~~~~~~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-----------  450 (587)
                        ...+..+|.+..++.+....   .|..++.++..+.-...+....     ...+|.+..++.. +..           
T Consensus       492 ~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~  571 (778)
T 3opb_A          492 PQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQI  571 (778)
T ss_dssp             HHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccc
Confidence              23456788888888765433   8999999998887544332211     1356777788772 221           


Q ss_pred             --HHHHHHHHHHHHHHHHhCh---h----hhh-hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HHHH------
Q 007863          451 --SIRDAAANNVKRLAEEFGP---D----WAM-QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EITC------  512 (587)
Q Consensus       451 --~vr~~a~~~l~~l~~~~~~---~----~~~-~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~------  512 (587)
                        --+..|+.+|.+++..-+.   +    .+. ...+|.+.+++.+.+..+|.+|++++.+++..-..  ..+.      
T Consensus       572 ~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~  651 (778)
T 3opb_A          572 KLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQ  651 (778)
T ss_dssp             CHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHH
T ss_pred             cHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCch
Confidence              2377899999999975321   1    123 25899999999999999999999999999863321  1121      


Q ss_pred             -HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHH-HhHHHHHHHhcCC--CCccHHHHHHHHHHHHHHH
Q 007863          513 -SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVE-KSIRPCLVELSED--PDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       513 -~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~-~~i~~~l~~l~~d--~~~~Vr~~a~~al~~l~~~  583 (587)
                       ..-++.++.++...+..+|.+|+.+|..+....+.   ..+. ...++.+..++.+  ++.++|.++..++..+.++
T Consensus       652 ~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          652 SLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             hhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence             11277888999999999999999999998643322   1222 2466777777777  8999999999999998863

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.58  E-value=1.1e-11  Score=133.27  Aligned_cols=570  Identities=10%  Similarity=0.036  Sum_probs=335.2

Q ss_pred             cHHHHHH-HhcC-ccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCc----c-
Q 007863           10 PIAVLID-ELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGL----E-   82 (587)
Q Consensus        10 ~~~~l~~-~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~----~-   82 (587)
                      .+...++ .+.. .|++.|..|.+.|..+-+  .| ..|.....++.+....+.++|..++..|.+....++.+    + 
T Consensus         7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~--sp-~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~   83 (980)
T 3ibv_A            7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS--SS-TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL   83 (980)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH--ST-THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc--Ch-hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence            4455553 3333 389999999998887643  23 45666666665432236789988888886655444433    2 


Q ss_pred             --hHhhhhhHHHhhh-cCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCC-cchhhHHhhhhh----hcc
Q 007863           83 --YANVLLPPLETLC-TVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWF-TARVSSCGLFHV----AYP  154 (587)
Q Consensus        83 --~~~~l~~~l~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~-~~r~~a~~l~~~----~~~  154 (587)
                        ....++..+.... .+..+.+|.+...++..++....++.+.. +++-+.++....+. ........++..    +..
T Consensus        84 ~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~-~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~  162 (980)
T 3ibv_A           84 QMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND-FFASLQGVIAASSQSEFSNFYLKVLLSIGDEIAD  162 (980)
T ss_dssp             HHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch-HHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHh
Confidence              1233444444321 13468899999999999998876554433 44444333322111 111111222221    111


Q ss_pred             C---CCHH-------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHhc
Q 007863          155 S---APEA-------------------LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH-LKSEIMSIFEELT  211 (587)
Q Consensus       155 ~---~~~~-------------------~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~-~~~~i~~~l~~l~  211 (587)
                      .   .++.                   ..+.++.++.......++.++..+.++++.....++... ..+.+++.+..++
T Consensus       163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L  242 (980)
T 3ibv_A          163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL  242 (980)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred             cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence            0   0110                   022233334343344678899999999998887654422 2356788888888


Q ss_pred             ccCchhHHHHHHHHHHHHhcccChhhhhhchH------HHHHHhcC-CCchHHHHHHHHHHHHHHHH---h-CCC-----
Q 007863          212 QDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL------PVIVNFSQ-DKSWRVRYMVANQLYELCEA---V-GPE-----  275 (587)
Q Consensus       212 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~------~~l~~~~~-d~~~~vR~~a~~~l~~l~~~---~-~~~-----  275 (587)
                      .+  +.+|..|+++|..+...-.+......++      +.+..+.. +.+..+++..++.+..++..   + ...     
T Consensus       243 ~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~  320 (980)
T 3ibv_A          243 QI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSP  320 (980)
T ss_dssp             TS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CH
T ss_pred             CC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccch
Confidence            76  7899999999999887654321222222      22222222 45666666555555444322   1 111     


Q ss_pred             -------CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--------H---HHHHhHHHHHhHhcC---C----
Q 007863          276 -------PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--------E---LAIQHILPCVKELSS---D----  330 (587)
Q Consensus       276 -------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--------~---~~~~~~~~~l~~~~~---d----  330 (587)
                             .....+++.+..++.+++++|-..++..+..+......        +   .+...+++.+.+-+.   |    
T Consensus       321 ~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~  400 (980)
T 3ibv_A          321 ELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWD  400 (980)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCC
T ss_pred             hhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccc
Confidence                   11124788888888888889988888777776654321        1   233444444433221   1    


Q ss_pred             C----c-----HHHHHHHHHHHHhhhhhhchHHHHH----hHHHHHHHhcC---CCChHHHHHHHHHhHHhhhhhchh--
Q 007863          331 S----S-----QHVRSALATVIMGMAPILGKDATIE----QLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGID--  392 (587)
Q Consensus       331 ~----~-----~~vr~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~i~~~~~~~--  392 (587)
                      .    +     ...|.... .+-..+..++++.+.+    .+.+.+...+.   ..++..+.+++.+++.+++.+...  
T Consensus       401 ~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~  479 (980)
T 3ibv_A          401 DDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDA  479 (980)
T ss_dssp             CCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGG
T ss_pred             cccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccc
Confidence            1    1     13566655 5556666667777666    66666666653   345778899999988888765431  


Q ss_pred             ------hHhhhhHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhCh-hhHHHHHHHHHHH--HcCCCchHHHHHHHH
Q 007863          393 ------LLSQSLLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLGV-GFFDDKLGALCMQ--WLKDKVYSIRDAAAN  458 (587)
Q Consensus       393 ------~~~~~~~~~l~~~~~-----~~~~~vr~~~~~~l~~l~~~~~~-~~~~~~l~~~l~~--~l~d~~~~vr~~a~~  458 (587)
                            ...+.+++.+..++.     ++++.||..+++.++..++-+.. ..+.+.+++.+..  .+.+++..||.+|+.
T Consensus       480 ~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~  559 (980)
T 3ibv_A          480 FFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWY  559 (980)
T ss_dssp             TBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHH
T ss_pred             ccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHH
Confidence                  223457777777765     78999999999999998887642 2344566777777  777889999999999


Q ss_pred             HHHHHHHHhChhh--hhhchHHHHHhhhcC---C------------------ccHHHHHHHHHHHHhhcccC--hH---H
Q 007863          459 NVKRLAEEFGPDW--AMQHIVPQVLEMINN---P------------------HYLYRMTILQAISLLAPVMG--SE---I  510 (587)
Q Consensus       459 ~l~~l~~~~~~~~--~~~~~~~~l~~~l~~---~------------------~~~~r~~a~~~l~~l~~~~~--~~---~  510 (587)
                      ++..+++.++...  +.+.++..+...+.-   +                  ...-+....++++.+....+  .+   .
T Consensus       560 af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~  639 (980)
T 3ibv_A          560 LFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQAL  639 (980)
T ss_dssp             HHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            9999999887642  223344444443331   1                  01235567778888876554  22   2


Q ss_pred             HHHhHHHHH----HhhcCCCC----ccHH-HHHHHHHHHHHhhhch--------HHHHHhHHHHHHHhcC--CCCccHHH
Q 007863          511 TCSQLLPVV----INASKDRV----PNIK-FNVAKVLQSLIPIVDQ--------SVVEKSIRPCLVELSE--DPDVDVRF  571 (587)
Q Consensus       511 ~~~~~l~~l----~~~l~d~~----~~vR-~~a~~~l~~l~~~~~~--------~~~~~~i~~~l~~l~~--d~~~~Vr~  571 (587)
                      +.+.+++.+    ...+....    ...+ ...+.+++.+.+.+..        ......+++.+...++  ..+..||.
T Consensus       640 ~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~ire  719 (980)
T 3ibv_A          640 YCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRG  719 (980)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            344444443    33333221    1112 2567777888876632        1122344555544443  46789999


Q ss_pred             HHHHHHHHHHHHhhc
Q 007863          572 FATQALQSKDQVMMS  586 (587)
Q Consensus       572 ~a~~al~~l~~~~~~  586 (587)
                      ++..++.++...+|.
T Consensus       720 a~~~~~~r~i~~lg~  734 (980)
T 3ibv_A          720 AVRFTSGRIINVVGP  734 (980)
T ss_dssp             HHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHHHHHccH
Confidence            999999999888774

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.58  E-value=4.2e-13  Score=122.37  Aligned_cols=187  Identities=13%  Similarity=0.079  Sum_probs=125.9

Q ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---ChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hh
Q 007863          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW  471 (587)
Q Consensus       398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~  471 (587)
                      .+|.+..++.++++.+|..++..++.++...   .........++.+..++.++++.+|..|+.+|+.++.....   ..
T Consensus        45 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  124 (252)
T 4hxt_A           45 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI  124 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4444444444444444544444444443210   00111123567777888888888888888888888742111   11


Q ss_pred             hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-
Q 007863          472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-  547 (587)
Q Consensus       472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-  547 (587)
                      .....+|.+.+++.++++.+|..++.++++++......   ......+|.+..++.++++.+|..++.+|+.++..-+. 
T Consensus       125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  204 (252)
T 4hxt_A          125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA  204 (252)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            23567888888888888889999999999887643221   22456888899999988899999999999998763221 


Q ss_pred             --HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863          548 --SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       548 --~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                        ......+++.|.+++.++++++|..|..++..+...-
T Consensus       205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence              1233567888899888889999999999999887653

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.57  E-value=1.6e-11  Score=131.97  Aligned_cols=477  Identities=10%  Similarity=0.123  Sum_probs=284.4

Q ss_pred             hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC--CCcchhhHHhhhhhhccCCCHH--------HHHHHHHHH
Q 007863           99 ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE--WFTARVSSCGLFHVAYPSAPEA--------LKTELRTIY  168 (587)
Q Consensus        99 ~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~--~~~~r~~a~~l~~~~~~~~~~~--------~~~~l~~~l  168 (587)
                      ++..|+.|.+.|.++-+.-  + .+.....++.   .+.  +..+|..|+..+.......+++        .++.+++.+
T Consensus        21 d~~~r~~A~~~L~~~q~sp--~-aw~~~~~iL~---~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ll~~l   94 (980)
T 3ibv_A           21 GPIIKQQATDFIGSLRSSS--T-GWKICHEIFS---EKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYI   94 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHST--T-HHHHHHHHTT---CTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCh--h-HHHHHHHHHh---CCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHH
Confidence            6777777777777665541  1 2222222221   111  4556666666555443333333        445555555


Q ss_pred             HHhcC-CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCch-hHHHHHHHHHHHHhcccCh-----------
Q 007863          169 RQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD-SVRLLAVEGCGALGKLLEP-----------  235 (587)
Q Consensus       169 ~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~-~vr~~a~~~l~~l~~~~~~-----------  235 (587)
                      ..... +..+.+|...+.++..++....+ ..|+.+++-+..+++..+. ..-....+.+..+.+.+..           
T Consensus        95 ~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~  173 (980)
T 3ibv_A           95 KELSFLDEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQ  173 (980)
T ss_dssp             HHCCSTTSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHH
T ss_pred             HHhcCCCCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHh
Confidence            54221 34578999999999999887533 3444555555555543222 2233344455543333211           


Q ss_pred             ------hh----hhhchHHHHHHh----cCCCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHH
Q 007863          236 ------QD----CVAHILPVIVNF----SQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAA  300 (587)
Q Consensus       236 ------~~----~~~~l~~~l~~~----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a  300 (587)
                            +.    ..+.+.+.+...    ....++.++..++++++......+... ....+++.+.+++.+  +++|.+|
T Consensus       174 r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A  251 (980)
T 3ibv_A          174 KDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAA  251 (980)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHH
T ss_pred             hhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHH
Confidence                  00    011123333333    333677888889999888776443221 124688888888887  6899999


Q ss_pred             HHhHHHHHHhhCHHHHHHhHH------HHHhHhcC-CCcHHHHHHHHHHHHhhhhhhc-----h-----------HHHHH
Q 007863          301 AGKVTKICRILNPELAIQHIL------PCVKELSS-DSSQHVRSALATVIMGMAPILG-----K-----------DATIE  357 (587)
Q Consensus       301 ~~~l~~l~~~~~~~~~~~~~~------~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~-----~-----------~~~~~  357 (587)
                      +.+|..+...-......-.++      +.+..+.. +.+..+....++.+..++..+-     .           .....
T Consensus       252 ~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~  331 (980)
T 3ibv_A          252 CETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLY  331 (980)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHH
Confidence            999999877543221111122      22222222 4566677666666655543211     0           03345


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch--------h---hHhhhhHHHHHHHhc---CCCc------------
Q 007863          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D---LLSQSLLPAIVELAE---DRHW------------  411 (587)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~--------~---~~~~~~~~~l~~~~~---~~~~------------  411 (587)
                      .++|.+..++.+++.+|-..++..+..+......        +   .+...+++.+..-+.   +.+|            
T Consensus       332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F  411 (980)
T 3ibv_A          332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF  411 (980)
T ss_dssp             HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence            6889999999999889888877777666543321        1   112223333333221   1122            


Q ss_pred             -HHHHHHHHHHHHHHHhhChhhHHH----HHHHHHHHHcC---CCchHHHHHHHHHHHHHHHHhChhh--------hhhc
Q 007863          412 -RVRLAIIEYIPLLASQLGVGFFDD----KLGALCMQWLK---DKVYSIRDAAANNVKRLAEEFGPDW--------AMQH  475 (587)
Q Consensus       412 -~vr~~~~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~---d~~~~vr~~a~~~l~~l~~~~~~~~--------~~~~  475 (587)
                       ..|+... .+-.....++++.+.+    .+.+.+.+.+.   +.+|..+++++-+++.+++.+....        ..+.
T Consensus       412 ~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~  490 (980)
T 3ibv_A          412 QEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTV  490 (980)
T ss_dssp             HHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCH
T ss_pred             HHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHH
Confidence             3566555 5555666677777666    66666666653   4679999999999999888654321        1234


Q ss_pred             hHHHHHhhhc-----CCccHHHHHHHHHHHHhhcccChH-HHHHhHHHHHHh--hcCCCCccHHHHHHHHHHHHHhhhch
Q 007863          476 IVPQVLEMIN-----NPHYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       476 ~~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~--~l~d~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                      +++.+..++.     ++++.+|.+++++++..+..+... .+...+++.++.  .+.++++.||.+|+.++..+++....
T Consensus       491 l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          491 LSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            5666666544     778999999999999999876532 367778888888  88889999999999999999988765


Q ss_pred             H--HHHHhHHHHHHHhcCC---C----C--------------ccHHHHHHHHHHHHHHHhh
Q 007863          548 S--VVEKSIRPCLVELSED---P----D--------------VDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       548 ~--~~~~~i~~~l~~l~~d---~----~--------------~~Vr~~a~~al~~l~~~~~  585 (587)
                      .  ++...++..+..++.-   +    +              .+-+....+|++.+.+.++
T Consensus       571 ~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          571 QVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             TCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             HhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence            3  3444556555554331   1    1              1246778888888887654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.57  E-value=1.3e-10  Score=125.01  Aligned_cols=508  Identities=9%  Similarity=0.034  Sum_probs=302.6

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc---
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE---   82 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~---   82 (587)
                      .++.++..+.++++..|..|-+.|..+-+.  | ..|..+...+..  ..++++|..++..+.+....    ++.++   
T Consensus        17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s--p-~aw~~~~~iL~~--s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~   91 (1023)
T 4hat_C           17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN--P-DAWQKADQILQF--STNPQSKFIALSILDKLITRKWKLLPNDHRIG   91 (1023)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--T-TGGGGHHHHHHH--CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHcC--c-cHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence            688888889888888999999888776432  2 345555555533  34678998888888665432    23222   


Q ss_pred             hHhhhhhHHHhhhcCc-----hhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC
Q 007863           83 YANVLLPPLETLCTVE-----ETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP  157 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~-----~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~  157 (587)
                      ....++..+.+...++     .+.++.+.+.++..+++...++.+ +.+++.+.++..+. .........++..+     
T Consensus        92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~W-p~~l~dL~~~l~~~-~~~~~~~L~iL~~L-----  164 (1023)
T 4hat_C           92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-PEFIPELIGSSSSS-VNVCENNMIVLKLL-----  164 (1023)
T ss_dssp             HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-TTHHHHHHHHTTTC-HHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhc-hHHHHHHHHHhcCC-HHHHHHHHHHHHHH-----
Confidence            2244455554443333     467788888899998887655543 44566655554432 11111111222111     


Q ss_pred             HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863          158 EALKTELRTIYRQLCQDD-MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~-~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                             .+-+.....+. ...-|...-+.+..-         .+.+++.+...+++ ..+.+...+.+++.+..+.++-
T Consensus       165 -------~EEV~~~~~~~l~~~r~~~lk~~l~~~---------~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i  228 (1023)
T 4hat_C          165 -------SEEVFDFSAEQMTQAKALHLKNSMSKE---------FEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY  228 (1023)
T ss_dssp             -------HHHHHTSCTTTSCHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT
T ss_pred             -------HHHHHHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH
Confidence                   11111111111 122222222222211         23344444444433 4567788899999998887765


Q ss_pred             hh-hhhchHHHHH-HhcCCCchHHHHHHHHHHHHHHHH-h-CCC-Ccccc-------hHHHH-HHh-------------c
Q 007863          236 QD-CVAHILPVIV-NFSQDKSWRVRYMVANQLYELCEA-V-GPE-PTRSD-------VVPAY-VRL-------------L  289 (587)
Q Consensus       236 ~~-~~~~l~~~l~-~~~~d~~~~vR~~a~~~l~~l~~~-~-~~~-~~~~~-------l~~~l-~~~-------------l  289 (587)
                      .. ..+.+++.+. .++.  ++..|..|+++|..++.. . ++. ...+.       +++.+ ..+             -
T Consensus       229 ~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~  306 (1023)
T 4hat_C          229 RYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANA  306 (1023)
T ss_dssp             HHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHT
T ss_pred             HHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhcc
Confidence            32 3356778777 6664  467999999999988752 1 110 01111       11111 111             1


Q ss_pred             CCChHHHHHHHHHhHHHHHHhhCH------H--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--------hH
Q 007863          290 RDNEAEVRIAAAGKVTKICRILNP------E--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--------KD  353 (587)
Q Consensus       290 ~d~~~~vr~~a~~~l~~l~~~~~~------~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--------~~  353 (587)
                      .+.+.+....-+..+..+++....      .  ......+..+..+...+++.+=..++.....+....-        ..
T Consensus       307 ~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~  386 (1023)
T 4hat_C          307 NGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYE  386 (1023)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence            334566666666666666664321      1  1122233455666666778886677777666654321        12


Q ss_pred             HHHHhHHHHHHHhcCCCC---------------------hHHHHHHH-HHhHHhhhhhchhhHhhhhHHHHHHHhcC--C
Q 007863          354 ATIEQLLPIFLSLLKDEF---------------------PDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAED--R  409 (587)
Q Consensus       354 ~~~~~l~~~l~~~l~d~~---------------------~~vr~~a~-~~l~~i~~~~~~~~~~~~~~~~l~~~~~~--~  409 (587)
                      .+...+++.+..-+.-++                     ........ ..|..+....+ ....+.+++.+.+.+.+  .
T Consensus       387 ~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~-~~~~~~~~~~l~~~l~~~~~  465 (1023)
T 4hat_C          387 EICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIDGSEW  465 (1023)
T ss_dssp             HHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHSSTTC
T ss_pred             HHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHHHHhcCCCC
Confidence            234456666665443221                     10111111 23333332223 34446677777766654  6


Q ss_pred             CcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHH
Q 007863          410 HWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLK-----DKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQV  480 (587)
Q Consensus       410 ~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l  480 (587)
                      +|+.|.+++-+++.++.....+   .+.+.++|.++.+..     |+...||..++.++|.+.+.+... .+.+.+++.+
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L  545 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKL  545 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            8999999999999999876543   345667777777765     456678888999999888766432 2456777778


Q ss_pred             HhhhcCCccHHHHHHHHHHHHhhcccChHH----------HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863          481 LEMINNPHYLYRMTILQAISLLAPVMGSEI----------TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       481 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----------~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      ++.+.++++.+..+|++++..+++.++...          +.+.++..+.....+-.+.-+..+.++++.++...+..
T Consensus       546 ~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~  623 (1023)
T 4hat_C          546 FEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV  623 (1023)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCH
Confidence            888888888999999999999998776542          56677777777777777888899999999999988754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.56  E-value=7.9e-14  Score=125.02  Aligned_cols=186  Identities=13%  Similarity=0.188  Sum_probs=144.2

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHH-HHHhhC-----hhhHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhC-hhh
Q 007863          400 PAIVELAEDRHWRVRLAIIEYIPL-LASQLG-----VGFFDDKLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFG-PDW  471 (587)
Q Consensus       400 ~~l~~~~~~~~~~vr~~~~~~l~~-l~~~~~-----~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~-~~~  471 (587)
                      +.+.+.+.+.+|.-|.+++..+.. +.....     ...+ ..++..+...+ +|.+..||..|+.+++.+++.++ ..+
T Consensus        19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f   97 (249)
T 2qk1_A           19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF   97 (249)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc
Confidence            345566788899999999888887 764311     1112 35677777788 78899999999999999998887 442


Q ss_pred             ---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          472 ---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       472 ---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                         +...++|.+++.+.|+...+|.++..++..+...+++.   .+.+.+++.+...++++++.+|..++.+|+.++...
T Consensus        98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A           98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence               34678888888888888889888888888888876432   124578888888888888999999999999888776


Q ss_pred             ch--H---HHH-HhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          546 DQ--S---VVE-KSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       546 ~~--~---~~~-~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +.  .   .+. ..++|.|.+++.|++++||..|.++++.++..+|+
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~  224 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM  224 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence            53  2   345 77889999988999999999999999999988885

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2.6e-11  Score=122.32  Aligned_cols=503  Identities=10%  Similarity=0.048  Sum_probs=292.7

Q ss_pred             hhcHHHHHHHhChhhhhhhhcccccc-c--cCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhH----H
Q 007863           30 IRRLSTIARALGEERTRKELIPFLSE-N--NDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETC----V  102 (587)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~l~p~l~~-~--~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~----v  102 (587)
                      +..+.++..+++.  .+++ +.|+.. .  -.+.++||..+.-.+.++.+..+ ......+..++..++.+.+..    -
T Consensus       153 l~~~~~l~~~~~~--~~~~-~~~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~  228 (778)
T 3opb_A          153 LSIILQLLNKFKY--NFKE-VRFLVKELILRISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDP  228 (778)
T ss_dssp             HHHHHHHHHHSCC--CSTT-TTHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCH
T ss_pred             HHHHHHHHHHcCc--cccc-hhhHHHHhccccChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCcc
Confidence            3444444455442  3344 444433 1  23455676555544444332212 233455556666555211111    1


Q ss_pred             HHHHHHHHHHHHhhcCh---h-hHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCC--HHHHHHHHHHHHHhcCCC
Q 007863          103 RDKAVESLCRIGSQMRE---Q-DVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAP--EALKTELRTIYRQLCQDD  175 (587)
Q Consensus       103 r~~a~~~l~~l~~~~~~---~-~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~--~~~~~~l~~~l~~l~~~~  175 (587)
                      -..+..++..+.-..+.   + ...+.+.|.+.+...+. ......++..++...+..-+  .-+.+..++++...+++ 
T Consensus       229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~-  307 (778)
T 3opb_A          229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV-  307 (778)
T ss_dssp             HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc-
Confidence            12233344433322211   0 11233455555544332 22333455556655443221  12556777888888865 


Q ss_pred             CHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hhh--hhchHHHHHHhcC
Q 007863          176 MPMVRRSAATNLGKFAATVEA-AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QDC--VAHILPVIVNFSQ  251 (587)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~~--~~~l~~~l~~~~~  251 (587)
                       ..+|..++-.|.++...-+. ......+.+.+.+++.+++...|..|++.|..+...-.- +..  ...++..+.++++
T Consensus       308 -~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk  386 (778)
T 3opb_A          308 -EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIK  386 (778)
T ss_dssp             -GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHh
Confidence             47888888888887654322 223456788888888876656699999999998643211 111  1235677777777


Q ss_pred             C-CchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHH------HHHHHhHHH-HHHhhCHHHHHHhHHHH
Q 007863          252 D-KSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVR------IAAAGKVTK-ICRILNPELAIQHILPC  323 (587)
Q Consensus       252 d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr------~~a~~~l~~-l~~~~~~~~~~~~~~~~  323 (587)
                      + .+..+-..++..|.++....+.......=+.-+.++.+-..++..      .... .+.. -...+    ....++|.
T Consensus       387 ~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~-~v~~~~~~~l----~eaGvIp~  461 (778)
T 3opb_A          387 SQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE-DILLFNEKYI----LRTELISF  461 (778)
T ss_dssp             TTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHH-HHHHHHHHHT----TTTTHHHH
T ss_pred             CCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchH-HHHHHHHHHH----HHCcCHHH
Confidence            4 566788888898888876544311101111111111111001100      0000 0111 00111    11347888


Q ss_pred             HhHhcCCCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChH---HHHHHHHHhHHhhhhhchhhHh---
Q 007863          324 VKELSSDSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPD---VRLNIISKLDQVNQVIGIDLLS---  395 (587)
Q Consensus       324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~---vr~~a~~~l~~i~~~~~~~~~~---  395 (587)
                      +..++.+.++.+|..+++++..++..-..  ....+..++.+..++.+....   +|..|+.+|.++.....+....   
T Consensus       462 Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~  541 (778)
T 3opb_A          462 LKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY  541 (778)
T ss_dssp             HHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC
Confidence            89999999999999999999999755321  123345678888888877544   8999999999998544332211   


Q ss_pred             --hhhHHHHHHHhcC-CCc-------------HHHHHHHHHHHHHHHhhCh-------hhHH-HHHHHHHHHHcCCCchH
Q 007863          396 --QSLLPAIVELAED-RHW-------------RVRLAIIEYIPLLASQLGV-------GFFD-DKLGALCMQWLKDKVYS  451 (587)
Q Consensus       396 --~~~~~~l~~~~~~-~~~-------------~vr~~~~~~l~~l~~~~~~-------~~~~-~~l~~~l~~~l~d~~~~  451 (587)
                        ...+|.+..++.. +..             .-+..++.++..++..-+.       ..+. ...+|.+..++.+++..
T Consensus       542 ~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~  621 (778)
T 3opb_A          542 SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVP  621 (778)
T ss_dssp             CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHH
T ss_pred             ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHH
Confidence              2678888888872 221             2277888888888875321       1233 25788999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCh---hhhhh---c---hHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh--HHH-H-HhHHHH
Q 007863          452 IRDAAANNVKRLAEEFGP---DWAMQ---H---IVPQVLEMINNPHYLYRMTILQAISLLAPVMGS--EIT-C-SQLLPV  518 (587)
Q Consensus       452 vr~~a~~~l~~l~~~~~~---~~~~~---~---~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~-~~~l~~  518 (587)
                      ||.+|+.+++.++..-..   +++..   .   -++.+..++...+..+|.+|..++.++....+.  ... . ...+..
T Consensus       622 VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~  701 (778)
T 3opb_A          622 LQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIEN  701 (778)
T ss_dssp             HHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHH
Confidence            999999999999963321   22211   1   267788889989999999999999998643221  111 1 246777


Q ss_pred             HHhhcCC--CCccHHHHHHHHHHHHHh
Q 007863          519 VINASKD--RVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       519 l~~~l~d--~~~~vR~~a~~~l~~l~~  543 (587)
                      ++.++.+  +++.+|..++.++..+..
T Consensus       702 Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          702 AIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            7778887  899999999999999987

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.55  E-value=1.7e-12  Score=128.56  Aligned_cols=149  Identities=11%  Similarity=0.028  Sum_probs=108.5

Q ss_pred             hhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChh--h-----H-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Q 007863          396 QSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVG--F-----F-DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEE  466 (587)
Q Consensus       396 ~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~--~-----~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  466 (587)
                      ...++.+..++.+ ++..++..++..+..++..-+..  .     + ....+|.+.+++.+.+.++|..|+.+|..++..
T Consensus       282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~  361 (457)
T 1xm9_A          282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH  361 (457)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence            3456777777754 56889999999998887532211  1     1 124578999999999999999999999999863


Q ss_pred             hChh-hhhhchHHHHHhhhcCCcc------HHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCC-CccHHHHHH
Q 007863          467 FGPD-WAMQHIVPQVLEMINNPHY------LYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDR-VPNIKFNVA  535 (587)
Q Consensus       467 ~~~~-~~~~~~~~~l~~~l~~~~~------~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~  535 (587)
                      -... .+....+|.+.+++.+++.      .+...++.++.++...-...   ......++.+..++.+. +..++..|+
T Consensus       362 ~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~  441 (457)
T 1xm9_A          362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR  441 (457)
T ss_dssp             GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHH
Confidence            2221 1346689999999877643      46778888888887533321   11345788999999988 999999999


Q ss_pred             HHHHHHHhh
Q 007863          536 KVLQSLIPI  544 (587)
Q Consensus       536 ~~l~~l~~~  544 (587)
                      ..|..++.+
T Consensus       442 ~~L~~~~~~  450 (457)
T 1xm9_A          442 LLLSDMWSS  450 (457)
T ss_dssp             HHHHTTSSS
T ss_pred             HHHHHHHcc
Confidence            999988653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.54  E-value=2.4e-13  Score=123.88  Aligned_cols=222  Identities=16%  Similarity=0.122  Sum_probs=153.8

Q ss_pred             HHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHH
Q 007863          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFD  434 (587)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~  434 (587)
                      +.+...+.++++++|..++.++..+...-..   .......+|.+..++.++++.+|..++..++.++....   .....
T Consensus        15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~   94 (252)
T 4db8_A           15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID   94 (252)
T ss_dssp             HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            4455555555566666666666444332100   01123456666666666666666666666666653110   11112


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--  509 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--  509 (587)
                      ...+|.+..+++++++.+|..|+.+|+.++......   ......+|.+.+++.++++.+|..++.++++++......  
T Consensus        95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~  174 (252)
T 4db8_A           95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ  174 (252)
T ss_dssp             TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            236788888898999999999999999887532221   233568999999999999999999999999998643221  


Q ss_pred             -HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          510 -ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       510 -~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                       ......+|.+..++.++++.+|..++.+|+.++..-+.   ......+++.|.+++.+.+++||..|..++..+++
T Consensus       175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence             12356789999999999999999999999999853222   13345688999999999999999999999998764

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.54  E-value=8.9e-12  Score=123.93  Aligned_cols=369  Identities=12%  Similarity=0.070  Sum_probs=200.1

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-h--hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---
Q 007863          162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-A--HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---  235 (587)
Q Consensus       162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-~--~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---  235 (587)
                      ..-+|.+..++.++++.++..|+.+|..++..-.. .  ....-.+|.|.+++.++++.++..|+.+|..++..-..   
T Consensus        47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk  126 (584)
T 3l6x_A           47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK  126 (584)
T ss_dssp             CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred             cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence            34566666777777777777777777666642221 0  11122456677777777777777777777776642111   


Q ss_pred             -hhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCC-CCcccchHHHHHHhcC------------------CChH
Q 007863          236 -QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP-EPTRSDVVPAYVRLLR------------------DNEA  294 (587)
Q Consensus       236 -~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~------------------d~~~  294 (587)
                       .......+|.+..++.+ .+..++..++.+|..++..-.. .......+|.+.+++.                  ..+.
T Consensus       127 ~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          127 IAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence             11223345666666654 4556666666666665531000 0000112344444430                  1123


Q ss_pred             HHHHHHHHhHHHHHHhhCH-H-HHH--HhHHHHHhHhcC------CCcHHHHHHHHHHHHhhhhhhchHHH-HHhHHHHH
Q 007863          295 EVRIAAAGKVTKICRILNP-E-LAI--QHILPCVKELSS------DSSQHVRSALATVIMGMAPILGKDAT-IEQLLPIF  363 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~-~-~~~--~~~~~~l~~~~~------d~~~~vr~~a~~~l~~l~~~~~~~~~-~~~l~~~l  363 (587)
                      .|+..|+.+|..++..-.. . ...  ..+++.+..+++      +.+......++.+|..++.....+.- .+.+... 
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~-  285 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA-  285 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhh-
Confidence            4444444444444432111 0 000  112222222221      12333334444444444322111100 0000000 


Q ss_pred             HHhcCCCChHHHHHHHHHhH-Hhhhhhchhh-HhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhCh--h----hH-
Q 007863          364 LSLLKDEFPDVRLNIISKLD-QVNQVIGIDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--G----FF-  433 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~-~i~~~~~~~~-~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~--~----~~-  433 (587)
                         ....+          .+ .....-|.+. +....++.+..++. ..++.++..++.+|..++..-+.  .    .+ 
T Consensus       286 ---~~~~~----------~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~  352 (584)
T 3l6x_A          286 ---APNVA----------NNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR  352 (584)
T ss_dssp             -----------------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHT
T ss_pred             ---ccccc----------ccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHH
Confidence               00000          00 0000011111 12345677777775 46799999999999888743211  1    11 


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcCC--------ccHHHHHHHHHHHHhhc
Q 007863          434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINNP--------HYLYRMTILQAISLLAP  504 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~~--------~~~~r~~a~~~l~~l~~  504 (587)
                      ....+|.+..++.+.+..++..|+.+|..++..-... .+....+|.+..++.++        +..+...++.+++++..
T Consensus       353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a  432 (584)
T 3l6x_A          353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA  432 (584)
T ss_dssp             SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence            1356899999999999999999999999998754332 24567899999998776        34678889999988864


Q ss_pred             ccCh---HHHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhh
Q 007863          505 VMGS---EITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPI  544 (587)
Q Consensus       505 ~~~~---~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~  544 (587)
                      .-..   .......+|.+..++.+.  .+.++..|+.+|..++.+
T Consensus       433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence            3211   123456899999999886  889999999999999754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.53  E-value=1.5e-12  Score=118.70  Aligned_cols=149  Identities=11%  Similarity=0.039  Sum_probs=102.5

Q ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hh
Q 007863          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DW  471 (587)
Q Consensus       398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~  471 (587)
                      .+|.+..++.++++.+|..++..+..++....   ........++.+..++.++++.+|..++.+|+.++.....   ..
T Consensus        87 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  166 (252)
T 4hxt_A           87 GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI  166 (252)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            44444555555555555555555544442110   0111223577788888888899999999999988753211   11


Q ss_pred             hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863          472 AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       472 ~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  546 (587)
                      .....+|.+.+++.+++..+|..++.++.+++......   ......++.+..++.++++.+|..|+.+|+.+....+
T Consensus       167 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  244 (252)
T 4hxt_A          167 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW  244 (252)
T ss_dssp             HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred             HHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence            23568899999999999999999999999998632211   1245678999999999999999999999999987644

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.53  E-value=3.9e-10  Score=116.32  Aligned_cols=260  Identities=14%  Similarity=0.051  Sum_probs=148.7

Q ss_pred             ChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCc--------HHHHHHHHHHHHhhhhhhchHHHHHhHHHHH
Q 007863          292 NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSS--------QHVRSALATVIMGMAPILGKDATIEQLLPIF  363 (587)
Q Consensus       292 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~--------~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l  363 (587)
                      +++.+|..|+.++|-+....+.+     ++..+...+.+++        ..+|..++-.||-+.-..+.+.    +.+.+
T Consensus       407 ~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~ee----v~e~L  477 (963)
T 4ady_A          407 SSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIE----VYEAL  477 (963)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHH----HHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHH----HHHHH
Confidence            34556666666666555443332     2233333332222        4566666666655443222222    33344


Q ss_pred             HHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHH
Q 007863          364 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  443 (587)
Q Consensus       364 ~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  443 (587)
                      ...+.|.+..+|..++.+|+.+.-.-|.....+.++..   +..+.+..+|..+...|+.+.  +|.+...+.++.   .
T Consensus       478 ~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~---~~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~---~  549 (963)
T 4ady_A          478 KEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY---SQETQHGNITRGLAVGLALIN--YGRQELADDLIT---K  549 (963)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHH---H
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHH---HhccCcHHHHHHHHHHHHhhh--CCChHHHHHHHH---H
Confidence            44445555566666666666654333333322223322   223455566666666665542  233222222222   2


Q ss_pred             HcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh-hhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHh-
Q 007863          444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE-MINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN-  521 (587)
Q Consensus       444 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~-~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~-  521 (587)
                      +..+.++-+|..++.+++--+-..|..    ..+..++. +..|++..+|.+|+.+|+.+...  ..    ...+.++. 
T Consensus       550 L~~~~dp~vRygaa~alglAyaGTGn~----~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g--~~----e~v~rlv~~  619 (963)
T 4ady_A          550 MLASDESLLRYGGAFTIALAYAGTGNN----SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR--DY----TTVPRIVQL  619 (963)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHTTTSCCH----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS--SC----SSHHHHTTT
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHhccCCcHHHHHHHHHHHHhhccC--CH----HHHHHHHHH
Confidence            234667777777777776555444443    23333333 24567778999999999887542  11    23444444 


Q ss_pred             hcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          522 ASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       522 ~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      +.++.++.||..++.+++.++..-+.    ..++..|..+..|++..||..|+.||+.+..
T Consensus       620 L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          620 LSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             HHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence            45678999999999999999754332    4677889999999999999999999998753

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.53  E-value=5e-13  Score=119.76  Aligned_cols=196  Identities=14%  Similarity=0.242  Sum_probs=123.7

Q ss_pred             hhhchHHHHHHhcCCCchHHHHHHHHHHHH-HHHHhCCC----CcccchHHHHHHhc-CCChHHHHHHHHHhHHHHHHhh
Q 007863          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYE-LCEAVGPE----PTRSDVVPAYVRLL-RDNEAEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~-l~~~~~~~----~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                      +.+.+-+-+.+.+++++|..|..++..|.. ++...+.-    .....++..+...+ +|.+..||..|+++++.++..+
T Consensus        13 i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l   92 (249)
T 2qk1_A           13 ILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL   92 (249)
T ss_dssp             CGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhc
Confidence            334444455666678888888888888887 76432221    11235666777777 6777788888888888887777


Q ss_pred             C-HH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863          312 N-PE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       312 ~-~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      + +.   .+...++|.+...++|+...||.++..++..++...++.   .+.+.+++.+...+++.++.+|..++..+..
T Consensus        93 ~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~  172 (249)
T 2qk1_A           93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNA  172 (249)
T ss_dssp             CTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            6 32   355667777777777777777777777777776655321   1134556666666666677777777777777


Q ss_pred             hhhhhch--h---hHh-hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhH
Q 007863          385 VNQVIGI--D---LLS-QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  433 (587)
Q Consensus       385 i~~~~~~--~---~~~-~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~  433 (587)
                      +....+.  .   .+. +.++|.+..++.|.+..+|..+.++++.+...+|.+.+
T Consensus       173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~  227 (249)
T 2qk1_A          173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF  227 (249)
T ss_dssp             HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence            6655542  1   123 45566666666666666666666666666666665443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.52  E-value=2.4e-13  Score=123.84  Aligned_cols=223  Identities=13%  Similarity=0.090  Sum_probs=167.4

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---hhh
Q 007863          165 RTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---QDC  238 (587)
Q Consensus       165 ~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~~~  238 (587)
                      ++.+...++++++.+|..++..|..+...-..   .......+|.+.++++++++.+|..|+.+|..++...+.   ...
T Consensus        14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~   93 (252)
T 4db8_A           14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI   93 (252)
T ss_dssp             HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45566777888899999999999876664211   122334678899999999999999999999999864332   122


Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH-
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE-  314 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-  314 (587)
                      ....+|.+..++.++++.+|..++.+|++++.....   .......+|.+.++++++++.+|..++.+|+.++...... 
T Consensus        94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  173 (252)
T 4db8_A           94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI  173 (252)
T ss_dssp             HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence            345889999999999999999999999998643111   1112357899999999999999999999999998632211 


Q ss_pred             --HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhh
Q 007863          315 --LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  387 (587)
Q Consensus       315 --~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~  387 (587)
                        .....++|.+.+++.++++.+|..++.+++.++..-..   .......+|.+..++.+.++.+|..++.+|..++.
T Consensus       174 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence              12355788899999999999999999999998743221   11233477888888888889999999998887753

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.49  E-value=3.7e-10  Score=121.42  Aligned_cols=474  Identities=8%  Similarity=0.031  Sum_probs=288.8

Q ss_pred             HHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhc----cCCCHH----HHHHHHHHHHHhc
Q 007863          101 CVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAY----PSAPEA----LKTELRTIYRQLC  172 (587)
Q Consensus       101 ~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~----~~~~~~----~~~~l~~~l~~l~  172 (587)
                      ..|+.|-+.|.++-+.-   +.......++.   .+.+..+|..|+..+....    ...+++    .++.+++.+....
T Consensus        31 ~~r~~A~~~L~~~q~sp---~aw~~~~~iL~---~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~  104 (1023)
T 4hat_C           31 VQQKQAQEILTKFQDNP---DAWQKADQILQ---FSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMC  104 (1023)
T ss_dssp             HHHHHHHHHHHHHHHCT---TGGGGHHHHHH---HCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCc---cHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhc
Confidence            37778887777766542   22333333332   2335567777776655443    245554    4455566555544


Q ss_pred             CCC-----CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---h--------
Q 007863          173 QDD-----MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q--------  236 (587)
Q Consensus       173 ~~~-----~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~--------  236 (587)
                      .++     .+.+|...+.++..++...-+ ..++.+++.+...++.. +.........|..+.+.+..   +        
T Consensus       105 ~~~~~i~~~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~  182 (1023)
T 4hat_C          105 QDDEVFKTQKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKAL  182 (1023)
T ss_dssp             HSHHHHHHCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHH
T ss_pred             CCcccccccHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHH
Confidence            443     467888899999998886533 34667777777777654 34456666666665554211   0        


Q ss_pred             -------hhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHH-HhcCCChHHHHHHHHHhHHH
Q 007863          237 -------DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYV-RLLRDNEAEVRIAAAGKVTK  306 (587)
Q Consensus       237 -------~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~  306 (587)
                             ...+.+++.+...++ ..+..+...+.++++.....++-.. ....+++.+. .++.+  ++.|.+|+.+|..
T Consensus       183 ~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~~--~~~r~~A~ecL~e  260 (1023)
T 4hat_C          183 HLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMTS--PDTRAITLKCLTE  260 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHHS--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcCC--HHHHHHHHHHHHH
Confidence                   112334555555554 3466788888899888776544321 2346888888 77754  6799999999999


Q ss_pred             HHHh-h-CHH-HHH-------HhHHHHH-hHh-------------cCCCcHHHHHHHHHHHHhhhhhhch--------HH
Q 007863          307 ICRI-L-NPE-LAI-------QHILPCV-KEL-------------SSDSSQHVRSALATVIMGMAPILGK--------DA  354 (587)
Q Consensus       307 l~~~-~-~~~-~~~-------~~~~~~l-~~~-------------~~d~~~~vr~~a~~~l~~l~~~~~~--------~~  354 (587)
                      +... . ++. .+.       ..+++.+ ..+             ..+.+.......+..+..+++....        ..
T Consensus       261 Iv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~  340 (1023)
T 4hat_C          261 VSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE  340 (1023)
T ss_dssp             HHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHH
T ss_pred             HHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhH
Confidence            9862 2 220 111       1222222 111             1223455555666666655543211        11


Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--------hHhhhhHHHHHHHhc---------C--CCc----
Q 007863          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------LLSQSLLPAIVELAE---------D--RHW----  411 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--------~~~~~~~~~l~~~~~---------~--~~~----  411 (587)
                      .....+..+..+...++.++-..++.....+.+.+-.+        .+...+++.+...+.         +  ..|    
T Consensus       341 ~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~  420 (1023)
T 4hat_C          341 LLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREF  420 (1023)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECS
T ss_pred             HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHh
Confidence            22223345556666667788777776666655433211        111233444433221         1  123    


Q ss_pred             ----H--HHH-HHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHHhChh---hhhhchHHH
Q 007863          412 ----R--VRL-AIIEYIPLLASQLGVGFFDDKLGALCMQWLKD--KVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQ  479 (587)
Q Consensus       412 ----~--vr~-~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~  479 (587)
                          +  ... ..-+.+..+....+. ...+.+.+.+.+.+.+  .+|..|++++-++|.+......+   .+...++|.
T Consensus       421 ~~d~d~~~~f~~~Rd~L~~l~~l~~~-~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~  499 (1023)
T 4hat_C          421 VKESDTIQLYKSEREVLVYLTHLNVI-DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD  499 (1023)
T ss_dssp             SCCGGGHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence                1  111 111444444443333 4445666766666654  68999999999999998766543   245677777


Q ss_pred             HHhhhc-----CCccHHHHHHHHHHHHhhcccCh-HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH-----
Q 007863          480 VLEMIN-----NPHYLYRMTILQAISLLAPVMGS-EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-----  548 (587)
Q Consensus       480 l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~-----  548 (587)
                      +..+..     |+...+|.++++++|..++.+.. ..+.+.++..++..+.++++.|...|+.++..++......     
T Consensus       500 Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~  579 (1023)
T 4hat_C          500 LLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ  579 (1023)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCC
T ss_pred             HHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            777765     35667888999999999986643 2367888888999999999999999999999999876543     


Q ss_pred             -----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          549 -----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       549 -----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                           ++...++..+.+...+-++.-+..+.+|++.+.+.++
T Consensus       580 ~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          580 PRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             TTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence                 2556667777776677777888899999998887765

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.48  E-value=8.9e-11  Score=114.12  Aligned_cols=245  Identities=12%  Similarity=0.013  Sum_probs=170.5

Q ss_pred             HHHHHHHhhhhhhch-H-HHHHhHHHHHHHhcC-----------CCChHHHHHHHHHhHHhhhhhc-hh-hH--hhhhHH
Q 007863          338 ALATVIMGMAPILGK-D-ATIEQLLPIFLSLLK-----------DEFPDVRLNIISKLDQVNQVIG-ID-LL--SQSLLP  400 (587)
Q Consensus       338 ~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~i~~~~~-~~-~~--~~~~~~  400 (587)
                      .|+.+|+.++..-.. + ......++.+..++.           ..++.++..++++|..++..-. .. .+  ....+|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            677777777533111 1 112235566666662           1246788999999998885422 11 12  235689


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhH-HHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHhC---hhhh
Q 007863          401 AIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF-DDKLGALCMQW-LKDKVYSIRDAAANNVKRLAEEFG---PDWA  472 (587)
Q Consensus       401 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~l~~~~~---~~~~  472 (587)
                      .+..++.+++..++..++.++..++..-+.   ..+ ....+|.++.+ +.+.+..+++.|+.+|..++....   ....
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            999999988999999999988887642111   111 12356777776 566788999999999999987321   1222


Q ss_pred             -hhchHHHHHhhhcCCcc----HHHHHHHHHHHHhhcc--cChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHH
Q 007863          473 -MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       473 -~~~~~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l  541 (587)
                       ....+|.+.+++.+++.    .++..++.+|.+++..  .+.+    ......+|.++.++.+.+..++..|+.+|..+
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             35689999998876543    4889999999998752  1222    12345789999999999999999999999999


Q ss_pred             Hhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          542 IPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       542 ~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      ...-..   .......+|.|.+++...++.+|..|..||..+..
T Consensus       407 a~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            742111   23445679999999999999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.42  E-value=9.2e-12  Score=109.78  Aligned_cols=187  Identities=16%  Similarity=0.109  Sum_probs=136.9

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---  469 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---  469 (587)
                      +...|.+..++.++++.+|..++..+..++..-.   ........+|.+..++.++++.+|..|+.+|+.++.....   
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            3455556666666666666666666666553211   0111234678888889999999999999999988742111   


Q ss_pred             hhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc
Q 007863          470 DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       470 ~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~  546 (587)
                      .......+|.+..++.+++..+|..++.++.+++......   ......+|.+..++.++++.+|..++.+|..++..-+
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            1233568899999999999999999999999998633221   1245689999999999999999999999999986522


Q ss_pred             h---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          547 Q---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       547 ~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .   .......++.|.+++.+++++||..|..+|..+++
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            2   13345689999999999999999999999998864

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.42  E-value=3.1e-14  Score=125.19  Aligned_cols=187  Identities=21%  Similarity=0.226  Sum_probs=125.6

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH
Q 007863          169 RQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN  248 (587)
Q Consensus       169 ~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  248 (587)
                      ..++.|+++.||..++..+.       .        ..+..+++|+++.||..++..+       +.        +.+..
T Consensus        56 ~~ll~d~~~~VR~~AA~~l~-------~--------~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~  105 (244)
T 1lrv_A           56 VQYLADPFWERRAIAVRYSP-------V--------EALTPLIRDSDEVVRRAVAYRL-------PR--------EQLSA  105 (244)
T ss_dssp             GGGTTCSSHHHHHHHHTTSC-------G--------GGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGGG
T ss_pred             HHHhcCCCHHHHHHHHHhCC-------H--------HHHHHHccCcCHHHHHHHHHHC-------CH--------HHHHH
Confidence            45678888888888888642       1        1355678888888888877642       11        24566


Q ss_pred             hcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhc
Q 007863          249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELS  328 (587)
Q Consensus       249 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~  328 (587)
                      +++|++|.||..++..+       +        .+.+..+++|+++.||..++..+       +.        +.+..++
T Consensus       106 ll~D~d~~VR~~aA~~l-------~--------~~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l~  155 (244)
T 1lrv_A          106 LMFDEDREVRITVADRL-------P--------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  155 (244)
T ss_dssp             TTTCSCHHHHHHHHHHS-------C--------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHHH
Confidence            77888888888887742       1        12355667888888888888632       11        2345677


Q ss_pred             CCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC
Q 007863          329 SDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  408 (587)
Q Consensus       329 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~  408 (587)
                      +|+++.||..++..+       +.        +.+..+++|+++.||..++..+.       .        +.+..++.|
T Consensus       156 ~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l~-------~--------~~L~~Ll~D  205 (244)
T 1lrv_A          156 RDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  205 (244)
T ss_dssp             TCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhCC-------H--------HHHHHHHcC
Confidence            888888888887751       11        34556778888888888887641       1        234455788


Q ss_pred             CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863          409 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK  461 (587)
Q Consensus       409 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      ++|.||..+.+.++               .+.+..+ +|++|.||..+...||
T Consensus       206 ~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          206 PDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             SSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            88888888877753               1334445 8888888888876654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.40  E-value=5.9e-11  Score=124.07  Aligned_cols=282  Identities=14%  Similarity=0.174  Sum_probs=216.7

Q ss_pred             HHHHHHhHHHHHHhhC-HHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCCC
Q 007863          297 RIAAAGKVTKICRILN-PELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDEF  371 (587)
Q Consensus       297 r~~a~~~l~~l~~~~~-~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~  371 (587)
                      +..++..+..+...-. .......++..+.+.+.++...  ..|+..+..++..++    .+.+.-.++|.+...+.|..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~  108 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD  108 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence            4455555555544211 1111124667777777776555  888888988887664    23444456788899999999


Q ss_pred             hHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhH---HHHHHHHHHHHcCC
Q 007863          372 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLKD  447 (587)
Q Consensus       372 ~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d  447 (587)
                      ..||.+|..++..+...+.++.. ..++|.+...+.+. .|..+..++..++.++... ++.+   .+.++|.+-.++.|
T Consensus       109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d  186 (986)
T 2iw3_A          109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWD  186 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhccc
Confidence            99999999999999999988776 77899998888655 7999999999999999865 3332   47899999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhc--ccChHHHHHhHHHHHHhhcCC
Q 007863          448 KVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAP--VMGSEITCSQLLPVVINASKD  525 (587)
Q Consensus       448 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~--~~~~~~~~~~~l~~l~~~l~d  525 (587)
                      ..++|..+|..++..++..+++.. .+.++|.+.+.+.+|+. +- .+++.++...=  .+. ...+.-+.|.+.+.|++
T Consensus       187 ~k~~v~~~~~~~~~~~~~~~~n~d-~~~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv~~v~-~~~l~~~~p~l~r~l~~  262 (986)
T 2iw3_A          187 TKKEVKAAATAAMTKATETVDNKD-IERFIPSLIQCIADPTE-VP-ETVHLLGATTFVAEVT-PATLSIMVPLLSRGLNE  262 (986)
T ss_dssp             SSHHHHHHHHHHHHHHGGGCCCTT-TGGGHHHHHHHHHCTTH-HH-HHHHHHTTCCCCSCCC-HHHHHHHHHHHHHHHTS
T ss_pred             CcHHHHHHHHHHHHHHHhcCCCcc-hhhhHHHHHHHhcChhh-hH-HHHHHhhcCeeEeeec-chhHHHHHHHHHhhhcc
Confidence            999999999999999999888764 36789999999999854 22 23444433221  111 23577899999999999


Q ss_pred             CCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHh-cCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          526 RVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVEL-SEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       526 ~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l-~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      +...++..++-.+.++++-++.+    .|...++|.+.+. -+=.+|++|..|.+|++++.+..+.
T Consensus       263 ~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          263 RETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             SSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999988664    7778888888884 4567999999999999999887653

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.38  E-value=2.9e-08  Score=106.35  Aligned_cols=504  Identities=9%  Similarity=0.011  Sum_probs=283.0

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCCcc---
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGGLE---   82 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~~~---   82 (587)
                      .++.++..+.+++++.|..|.+.|..+-   ..+..|..+..++..  +.++++|..++..|.+....    ++.++   
T Consensus        29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q---~sp~aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~  103 (1073)
T 3gjx_A           29 LLDNVVNCLYHGEGAQQRMAQEVLTHLK---EHPDAWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPRNQCEG  103 (1073)
T ss_dssp             HHHHHHHTTTCSSHHHHHHHHHHHHTSS---CCSCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHH---cCchHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence            6888999999999999999988886542   123456656665543  34678998888888665442    22222   


Q ss_pred             hHhhhhhHHHhhhcC-----chhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCC
Q 007863           83 YANVLLPPLETLCTV-----EETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP  157 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~-----~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~  157 (587)
                      ....++..+.+...+     .++.++.+.+.++..+++..-++.+ +.+++.+.+..... .........++..+.    
T Consensus       104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-p~fi~dLv~~~~~~-~~~~~~~L~IL~~L~----  177 (1073)
T 3gjx_A          104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-PTFISDIVGASRTS-ESLCQNNMVILKLLS----  177 (1073)
T ss_dssp             HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-TTHHHHHHHHHHHC-HHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-cHHHHHHHHHhCCC-HHHHHHHHHHHHHHH----
Confidence            234455555544333     2577788888899998887655543 34444444433211 111111222221111    


Q ss_pred             HHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcc
Q 007863          158 EALKTELRTIYRQLCQDDM----PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       158 ~~~~~~l~~~l~~l~~~~~----~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~  232 (587)
                                  +-..+..    ...|.      ..+-+.+.  ...+.+++++...++. .++.+...+.++++.+.+.
T Consensus       178 ------------EEV~d~~~~~l~~~r~------~~lk~~L~--~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW  237 (1073)
T 3gjx_A          178 ------------EEVFDFSSGQITQVKA------KHLKDSMC--NEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW  237 (1073)
T ss_dssp             ------------HHHTTSHHHHBCHHHH------HHHHHHHH--HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred             ------------HHHHhcccccccHHHH------HHHHHHHH--HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence                        1111110    01111      01111111  1134455555555533 4567788888999999888


Q ss_pred             cChhhh-hhchHHHH-HHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHH-------HHh-------------cC
Q 007863          233 LEPQDC-VAHILPVI-VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY-------VRL-------------LR  290 (587)
Q Consensus       233 ~~~~~~-~~~l~~~l-~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l-------~~~-------------l~  290 (587)
                      ++-... ...+++.+ ...+.  ++..|..|+++|..++.. ..+.....+...+       ...             ..
T Consensus       238 I~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k-~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~  314 (1073)
T 3gjx_A          238 IPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGV-SVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGK  314 (1073)
T ss_dssp             SCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHS-CSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCC
T ss_pred             cCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccc
Confidence            876432 35577766 45554  567999999999998764 1111111111111       111             13


Q ss_pred             CChHHHHHHHHHhHHHHHHhhCH------H--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch----------
Q 007863          291 DNEAEVRIAAAGKVTKICRILNP------E--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----------  352 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~------~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----------  352 (587)
                      +.+.+.-..-+..+..+++....      +  ......+.++..+...++..+-..+...+..+...+-.          
T Consensus       315 ~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~  394 (1073)
T 3gjx_A          315 DDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASP  394 (1073)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSS
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence            34444444445555554443211      1  11223344456666667777777777766665443210          


Q ss_pred             -----------------HHHHHhHHHHHHHhcCCCC--------------------h--HHHHHHHHHhHHhhhhhchhh
Q 007863          353 -----------------DATIEQLLPIFLSLLKDEF--------------------P--DVRLNIISKLDQVNQVIGIDL  393 (587)
Q Consensus       353 -----------------~~~~~~l~~~l~~~l~d~~--------------------~--~vr~~a~~~l~~i~~~~~~~~  393 (587)
                                       ..+...+...+..-+.-++                    .  .++...-.++..+ ..++.+.
T Consensus       395 ~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~l-t~l~~~~  473 (1073)
T 3gjx_A          395 LLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYL-THLDYVD  473 (1073)
T ss_dssp             CTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHH-HHHCHHH
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHH-hcCCHHH
Confidence                             0112223333333222110                    0  1111222222222 2344444


Q ss_pred             HhhhhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChh---hHHHHHHHHHHHHcCCC-----chHHHHHHHHHHHHH
Q 007863          394 LSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLKDK-----VYSIRDAAANNVKRL  463 (587)
Q Consensus       394 ~~~~~~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~l  463 (587)
                      ....+.+.+.+.+..  .+|..+.+++-+++.++.....+   .+.+.+++.+..+...+     ...++...+-.+|+.
T Consensus       474 ~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY  553 (1073)
T 3gjx_A          474 TEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQY  553 (1073)
T ss_dssp             HHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhh
Confidence            445666777665543  56999999999999998766532   34566677666665433     234555555677777


Q ss_pred             HHHhChh-hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH----------HHHHhHHHHHHhhcCCCCccHHH
Q 007863          464 AEEFGPD-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE----------ITCSQLLPVVINASKDRVPNIKF  532 (587)
Q Consensus       464 ~~~~~~~-~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----------~~~~~~l~~l~~~l~d~~~~vR~  532 (587)
                      .+-+... .+.+.++..+++.+.+++..++.+|+.++..+++.++..          .+.+.++..+.....+-.+.-..
T Consensus       554 ~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~  633 (1073)
T 3gjx_A          554 PRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVH  633 (1073)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHH
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHH
Confidence            6654332 256778888888889999999999999999999877654          25566666666666666777788


Q ss_pred             HHHHHHHHHHhhhchH
Q 007863          533 NVAKVLQSLIPIVDQS  548 (587)
Q Consensus       533 ~a~~~l~~l~~~~~~~  548 (587)
                      ...++++.++...+.+
T Consensus       634 ~lyeav~~vi~~~p~~  649 (1073)
T 3gjx_A          634 TFYEAVGYMIGAQTDQ  649 (1073)
T ss_dssp             HHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHhCCCc
Confidence            8899999998887754

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.38  E-value=2.4e-10  Score=111.04  Aligned_cols=245  Identities=13%  Similarity=0.048  Sum_probs=168.2

Q ss_pred             HHHHHHHHHHHHhC--CCCcccchHHHHHHhcC-----------CChHHHHHHHHHhHHHHHHhhCHH--HH--HHhHHH
Q 007863          260 MVANQLYELCEAVG--PEPTRSDVVPAYVRLLR-----------DNEAEVRIAAAGKVTKICRILNPE--LA--IQHILP  322 (587)
Q Consensus       260 ~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~-----------d~~~~vr~~a~~~l~~l~~~~~~~--~~--~~~~~~  322 (587)
                      .|+.+|++++..-.  ........++.+..++.           +.++.++..|+.+|..++..-...  .+  ...++|
T Consensus       167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  246 (458)
T 3nmz_A          167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  246 (458)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence            67777777643200  00112246677777762           134779999999999998642211  22  234689


Q ss_pred             HHhHhcCCCcHHHHHHHHHHHHhhhhhhc---hHHH-HHhHHHHHHHh-cCCCChHHHHHHHHHhHHhhhhh-c-hhhH-
Q 007863          323 CVKELSSDSSQHVRSALATVIMGMAPILG---KDAT-IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVI-G-IDLL-  394 (587)
Q Consensus       323 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~-~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~-~-~~~~-  394 (587)
                      .+..++.+++..++..++.+|..++..-+   ...+ ....+|.+..+ +...++.++..++.+|..++..- + ...+ 
T Consensus       247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            99999999999999999999999875311   1222 23467888886 56678899999999998887622 1 1122 


Q ss_pred             -hhhhHHHHHHHhcCCCc----HHHHHHHHHHHHHHHh--hChhh----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q 007863          395 -SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQ--LGVGF----FDDKLGALCMQWLKDKVYSIRDAAANNVKRL  463 (587)
Q Consensus       395 -~~~~~~~l~~~~~~~~~----~vr~~~~~~l~~l~~~--~~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l  463 (587)
                       ....+|.+..++.+.+.    .++..++..+..++..  .+.+.    .....+|.+..++.+.+..+++.|+.+|..+
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL  406 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL  406 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence             34678999988876543    5888888888887752  12211    1123578888899999999999999999988


Q ss_pred             HHHhChh----hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcc
Q 007863          464 AEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       464 ~~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  505 (587)
                      +.. ..+    ......+|.+.+++.+++..+|..|+.+|.++...
T Consensus       407 a~~-~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          407 SAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HSS-CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HcC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            731 111    12356788888888888888899999999888764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.38  E-value=5.5e-14  Score=123.63  Aligned_cols=188  Identities=20%  Similarity=0.227  Sum_probs=135.9

Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHH
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV  286 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~  286 (587)
                      +..+++|+++.||..++..+       +.        ..+..+++|+++.||..++..+       +        .+.+.
T Consensus        55 ~~~ll~d~~~~VR~~AA~~l-------~~--------~~l~~L~~D~~~~VR~~aA~~L-------~--------~~~L~  104 (244)
T 1lrv_A           55 AVQYLADPFWERRAIAVRYS-------PV--------EALTPLIRDSDEVVRRAVAYRL-------P--------REQLS  104 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------CG--------GGGGGGTTCSSHHHHHHHHTTS-------C--------SGGGG
T ss_pred             HHHHhcCCCHHHHHHHHHhC-------CH--------HHHHHHccCcCHHHHHHHHHHC-------C--------HHHHH
Confidence            34577899999999888753       11        1356788999999999998752       1        14577


Q ss_pred             HhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh
Q 007863          287 RLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL  366 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  366 (587)
                      .+++|+++.||..++..+       ..        +.+..+++|+++.||..++..+       +.        +.+..+
T Consensus       105 ~ll~D~d~~VR~~aA~~l-------~~--------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l  154 (244)
T 1lrv_A          105 ALMFDEDREVRITVADRL-------PL--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF  154 (244)
T ss_dssp             GTTTCSCHHHHHHHHHHS-------CT--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred             HHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHH
Confidence            889999999999988853       11        2456778999999999998742       11        235577


Q ss_pred             cCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC
Q 007863          367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK  446 (587)
Q Consensus       367 l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  446 (587)
                      ++|+++.||..++..++       .        +.+..+++|++|.||..++..+       +.        +.+..++.
T Consensus       155 ~~D~d~~VR~~aa~~l~-------~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~  204 (244)
T 1lrv_A          155 MRDEDRQVRKLVAKRLP-------E--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLH  204 (244)
T ss_dssp             TTCSCHHHHHHHHHHSC-------G--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGG
T ss_pred             HcCCCHHHHHHHHHcCC-------H--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHc
Confidence            88999999999888622       1        2233567899999999988763       11        34666788


Q ss_pred             CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHH
Q 007863          447 DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAIS  500 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~  500 (587)
                      |++|.||..++..++               .+.+..+ .|++|.||..+...++
T Consensus       205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRLG  242 (244)
T ss_dssp             CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred             CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence            999999999888764               2445555 8899999988876543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.34  E-value=2.5e-11  Score=106.94  Aligned_cols=188  Identities=13%  Similarity=0.084  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-  235 (587)
                      ......+.+..+++++++.+|..++.+|+.++..-+.   .......+|.+.++++++++.+|..|+.+|+.++..-+. 
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            3455677888899999999999999999999843221   122234688888999999999999999999998753322 


Q ss_pred             --hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863          236 --QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRI  310 (587)
Q Consensus       236 --~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (587)
                        .......+|.+..++.++++.+|..++.+|++++.....   .......+|.+.++++++++.+|..++.+|..++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence              122345788889999999999999999999888742110   011234678888888888888888888888888763


Q ss_pred             hCHH---HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhh
Q 007863          311 LNPE---LAIQHILPCVKELSSDSSQHVRSALATVIMGMA  347 (587)
Q Consensus       311 ~~~~---~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~  347 (587)
                      -...   ......++.+.+++.+++..+|..++.++..++
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            1111   112345666666777777777777777766664

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.32  E-value=2.8e-09  Score=84.88  Aligned_cols=216  Identities=16%  Similarity=0.134  Sum_probs=161.5

Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhhChhhHH
Q 007863          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFD  434 (587)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~-~~~~~~~vr~~~~~~l~~l~~~~~~~~~~  434 (587)
                      .+.++.-+..+|.|.-+.|+..+++.+..++.....  ..+.++..+..+ -+++.........+.+|.++.. .++. .
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e--l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~-v  105 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED--LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPEL-V  105 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHH-H
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH--HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHH-H
Confidence            345667777888888888888888888888765431  112233333333 3566667777888888888763 3433 4


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHh
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ  514 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~  514 (587)
                      ..++|.+.....-.++.+|.....+|+.+......  ....+...+..++.++|..-|.+++.+++.++.+.  -.+...
T Consensus       106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--~~yv~P  181 (253)
T 2db0_A          106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM--LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--FKYVNP  181 (253)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT--HHHHGG
T ss_pred             HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH--HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC--ccccCc
Confidence            56889998888888999999999999999886433  24556777788899999999999999999888643  236778


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .+|.+..++.|.+..||..++++|+.+...-+  .+...+...+.+ .+|+...|......+++.+.-
T Consensus       182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~np--klRkii~~kl~e-~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          182 FLPRIINLLHDGDEIVRASAVEALVHLATLND--KLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HHHHHHHHHHHH-CCCSCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999987532  233344444444 499999999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.31  E-value=1.8e-09  Score=113.11  Aligned_cols=277  Identities=13%  Similarity=0.174  Sum_probs=208.5

Q ss_pred             HHHHHHHHHHHhc-ccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc----ccchHHHHHHhcCCCh
Q 007863          219 RLLAVEGCGALGK-LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RSDVVPAYVRLLRDNE  293 (587)
Q Consensus       219 r~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~l~~~l~~~l~d~~  293 (587)
                      +..+...+..+.. ..........+...+.+.+.++...  ..|+..++.++...+....    .-.++|.+...+.|..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~  108 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD  108 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence            3444444554433 2222222236788888888887554  8889999999876654221    1135788888889999


Q ss_pred             HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCC-cHHHHHHHHHHHHhhhhhhchH--HHHHhHHHHHHHhcCCC
Q 007863          294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDS-SQHVRSALATVIMGMAPILGKD--ATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~  370 (587)
                      ..||.+|..+...+...++++.. ..++|.+...+.+. .|..+.+++..+..++...+..  ...+.++|.+...+.|.
T Consensus       109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~  187 (986)
T 2iw3_A          109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT  187 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence            99999999999999999999876 78889988877655 6999999999999998766422  24578999999999999


Q ss_pred             ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh-hC---hhhHHHHHHHHHHHHcC
Q 007863          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ-LG---VGFFDDKLGALCMQWLK  446 (587)
Q Consensus       371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~-~~---~~~~~~~l~~~l~~~l~  446 (587)
                      -++|..++..++..++..+++.++ +..+|.+.+.+.+++. +    -+++..++.. +=   ......-++|++.+.|.
T Consensus       188 k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-~----~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~  261 (986)
T 2iw3_A          188 KKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-V----PETVHLLGATTFVAEVTPATLSIMVPLLSRGLN  261 (986)
T ss_dssp             SHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-H----HHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-h----HHHHHHhhcCeeEeeecchhHHHHHHHHHhhhc
Confidence            999999999999999999998887 5689999999998843 2    2333333321 10   11123568999999999


Q ss_pred             CCchHHHHHHHHHHHHHHHHhChh----hhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhc
Q 007863          447 DKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       447 d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~  504 (587)
                      ++...++..++-.+.++++.....    .|.+.++|.+.+... -.++++|..+..++..+..
T Consensus       262 ~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          262 ERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             SSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             cCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999876554    266788888877543 3578899998888887754

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.21  E-value=1.6e-09  Score=102.11  Aligned_cols=211  Identities=12%  Similarity=0.020  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHhHHhhhhhc-hh-hH--hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhH-HHHHHHHHHH
Q 007863          372 PDVRLNIISKLDQVNQVIG-ID-LL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFF-DDKLGALCMQ  443 (587)
Q Consensus       372 ~~vr~~a~~~l~~i~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~---~~~-~~~l~~~l~~  443 (587)
                      +.++..++.+|..++..-. .. .+  ....+|.+..++.+++..++..++..+..++..-+.   ..+ ....+|.++.
T Consensus        98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~  177 (354)
T 3nmw_A           98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME  177 (354)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHH
Confidence            4455555555555543211 11 11  123456666666655666666666665555432111   111 1123555555


Q ss_pred             H-cCCCchHHHHHHHHHHHHHHHHhC---hhhh-hhchHHHHHhhhcCCcc----HHHHHHHHHHHHhhcc--cChH---
Q 007863          444 W-LKDKVYSIRDAAANNVKRLAEEFG---PDWA-MQHIVPQVLEMINNPHY----LYRMTILQAISLLAPV--MGSE---  509 (587)
Q Consensus       444 ~-l~d~~~~vr~~a~~~l~~l~~~~~---~~~~-~~~~~~~l~~~l~~~~~----~~r~~a~~~l~~l~~~--~~~~---  509 (587)
                      + +++.+..+++.|+.+|..++....   .... ....+|.+.+++.+++.    .++..++.++.+++..  .+.+   
T Consensus       178 lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~  257 (354)
T 3nmw_A          178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQ  257 (354)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence            4 345566777777777777764211   1112 34567777777665432    4677777777777642  1111   


Q ss_pred             H-HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          510 I-TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       510 ~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      . .....+|.++.++.+.+..++..|+.+|..+...-..   .......+|.|.+++.+.+..+|..|..||..+..
T Consensus       258 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          258 ILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence            1 1234677777777777777888888888777632111   12334567777777777777788888888777764

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.20  E-value=1.3e-07  Score=104.60  Aligned_cols=507  Identities=11%  Similarity=-0.003  Sum_probs=266.6

Q ss_pred             CcccHHHHHHHhcCc--cHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccC----cCC
Q 007863            7 PLYPIAVLIDELKND--DIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPY----VGG   80 (587)
Q Consensus         7 ~~~~~~~l~~~l~s~--d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~----~~~   80 (587)
                      .+..+..++..+.++  |++.|..|.+.|..+-+.  |+ .+..+.-.|. ..+.+.++|..++..|.+....    ++.
T Consensus         9 ~~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~-~~~~~~~~L~-~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~   84 (1204)
T 3a6p_A            9 LCEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP-ICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWNGMSR   84 (1204)
T ss_dssp             HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT-THHHHHHHHT-STTSCHHHHHHHHHHHHHHHHHSGGGSCH
T ss_pred             HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch-HHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHHhcccCCH
Confidence            334577777776766  778899999988776332  21 2333333332 2244678998888877665432    222


Q ss_pred             cc---hHhhhhhHHHhhhc---CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc
Q 007863           81 LE---YANVLLPPLETLCT---VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP  154 (587)
Q Consensus        81 ~~---~~~~l~~~l~~l~~---~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~  154 (587)
                      +.   ....++..+.+...   +.++.+|.+...++..+++.-.++. ++.+++.+.++..++ ...+..+..++..+.+
T Consensus        85 e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-Wp~ll~~L~~~~~~~-~~~~e~~L~iL~~L~E  162 (1204)
T 3a6p_A           85 LEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-WPDMLIELDTLSKQG-ETQTELVMFILLRLAE  162 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-chHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence            11   12233333332211   1568999999999999998865544 456667766666542 2223333333333211


Q ss_pred             CCCHHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHhccc-------------------C
Q 007863          155 SAPEALKTELRTIYRQLCQDDMPMVRRSA-ATNLGKFAATVEAAHLKSEIMSIFEELTQD-------------------D  214 (587)
Q Consensus       155 ~~~~~~~~~l~~~l~~l~~~~~~~vR~~a-~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d-------------------~  214 (587)
                                  -+... .+... .|..- -..+.   .      ..+.+++.+...+.+                   +
T Consensus       163 ------------ev~~~-~~~~~-~r~~~l~~~l~---~------~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~  219 (1204)
T 3a6p_A          163 ------------DVVTF-QTLPP-QRRRDIQQTLT---Q------NMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQA  219 (1204)
T ss_dssp             ------------HHHTS-CCSCH-HHHHHHHHHHH---H------THHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHH
T ss_pred             ------------HHccc-cchHH-HHHHHHHHHHH---H------HHHHHHHHHHHHHHHHHHHHhcccccccchhhhhh
Confidence                        00011 11111 22211 11111   0      012222222222221                   2


Q ss_pred             chhHHHHHHHHHHHHhcccChhhhhh---chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHH--------
Q 007863          215 QDSVRLLAVEGCGALGKLLEPQDCVA---HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVP--------  283 (587)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~~~~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~--------  283 (587)
                      ...++..+.+++.......+.....+   .+++.+..++.+  +.+|..|+++|..++...........++.        
T Consensus       220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~  297 (1204)
T 3a6p_A          220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH  297 (1204)
T ss_dssp             HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence            34567777777777666655432222   378877777664  67899999999998863221000011111        


Q ss_pred             HHHHhc--------CCChHHHHHHHHHhHHHHHHhhCH----------HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHh
Q 007863          284 AYVRLL--------RDNEAEVRIAAAGKVTKICRILNP----------ELAIQHILPCVKELSSDSSQHVRSALATVIMG  345 (587)
Q Consensus       284 ~l~~~l--------~d~~~~vr~~a~~~l~~l~~~~~~----------~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~  345 (587)
                      .+....        .|.+.++++..++.+..++..+..          ......+++.+..+..+++..+-..++..+..
T Consensus       298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~  377 (1204)
T 3a6p_A          298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA  377 (1204)
T ss_dssp             HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHH
Confidence            122221        333466777777776666542211          12235688888888889988888888887776


Q ss_pred             hhhhh--ch----HHHHHhHHHHHHH---hcCC---CC---------------------hHHHHHHHHHhHHhhhhhchh
Q 007863          346 MAPIL--GK----DATIEQLLPIFLS---LLKD---EF---------------------PDVRLNIISKLDQVNQVIGID  392 (587)
Q Consensus       346 l~~~~--~~----~~~~~~l~~~l~~---~l~d---~~---------------------~~vr~~a~~~l~~i~~~~~~~  392 (587)
                      +.+..  +.    ..+...+++.+..   -+.-   .+                     .+.|......+..++...+. 
T Consensus       378 ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~-  456 (1204)
T 3a6p_A          378 LFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPK-  456 (1204)
T ss_dssp             HHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHH-
T ss_pred             HHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHH-
Confidence            65443  11    1233445555521   1111   00                     12344444444444433322 


Q ss_pred             hHhhhhHHHHHHHhcC-------------------------CCcHHHHHHHHHHHHHHHhh---C--hh---hHHHHHHH
Q 007863          393 LLSQSLLPAIVELAED-------------------------RHWRVRLAIIEYIPLLASQL---G--VG---FFDDKLGA  439 (587)
Q Consensus       393 ~~~~~~~~~l~~~~~~-------------------------~~~~vr~~~~~~l~~l~~~~---~--~~---~~~~~l~~  439 (587)
                      .....+.+.+...+.+                         +.|....+....++.+...+   .  .+   ...+.+++
T Consensus       457 ~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~  536 (1204)
T 3a6p_A          457 TSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ  536 (1204)
T ss_dssp             HHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence            2223444555443321                         23444445444455444433   1  11   11233333


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHHhChh-hhhhchHHHHHhhhcC------------CccHHHHHHHHHHHHhhccc
Q 007863          440 LCMQWLKDKVYSIRDAAANNVKRLAEEFGPD-WAMQHIVPQVLEMINN------------PHYLYRMTILQAISLLAPVM  506 (587)
Q Consensus       440 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~l~~------------~~~~~r~~a~~~l~~l~~~~  506 (587)
                      .+... ...++.+|..++.+++.+...+... .+...++..++..+.+            .+..+|.+|+.++..++..+
T Consensus       537 ~ll~~-~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~  615 (1204)
T 3a6p_A          537 MVLNF-DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDY  615 (1204)
T ss_dssp             HHHHC-CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhC-CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            32221 3457889999999999888765422 1334455555555544            23479999999999999877


Q ss_pred             ChH--HHHHhHHHHHHhhcCCC---CccHHHHHHHHHHHHHhhhc
Q 007863          507 GSE--ITCSQLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVD  546 (587)
Q Consensus       507 ~~~--~~~~~~l~~l~~~l~d~---~~~vR~~a~~~l~~l~~~~~  546 (587)
                      +..  .+.+.+...+...+...   ...-+.....++..+...++
T Consensus       616 ~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~  660 (1204)
T 3a6p_A          616 PQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK  660 (1204)
T ss_dssp             HHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence            653  24566666666655432   35566667777777754443

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.18  E-value=4e-09  Score=99.40  Aligned_cols=214  Identities=12%  Similarity=0.065  Sum_probs=154.5

Q ss_pred             cHHHHHHHHHHHHhhhhhhc--hHHH--HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc---hhh-HhhhhHHHHH
Q 007863          332 SQHVRSALATVIMGMAPILG--KDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDL-LSQSLLPAIV  403 (587)
Q Consensus       332 ~~~vr~~a~~~l~~l~~~~~--~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~---~~~-~~~~~~~~l~  403 (587)
                      +..+|..++.+|..++..-.  +..+  ...++|.+..+|.+++++++..++.+|..++..-+   ... .....+|.+.
T Consensus        97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv  176 (354)
T 3nmw_A           97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM  176 (354)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence            46788888888888874322  1112  13458889999998889999999999988875311   111 1235688888


Q ss_pred             HH-hcCCCcHHHHHHHHHHHHHHHhh-C--hhhH-HHHHHHHHHHHcCCCch----HHHHHHHHHHHHHHHHh--Chhh-
Q 007863          404 EL-AEDRHWRVRLAIIEYIPLLASQL-G--VGFF-DDKLGALCMQWLKDKVY----SIRDAAANNVKRLAEEF--GPDW-  471 (587)
Q Consensus       404 ~~-~~~~~~~vr~~~~~~l~~l~~~~-~--~~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~l~~~~--~~~~-  471 (587)
                      ++ ..+.+..++..++..+..++... +  .... ....+|.+..++.+.+.    ++++.|+.+|..++...  +.+. 
T Consensus       177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~  256 (354)
T 3nmw_A          177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHR  256 (354)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHH
Confidence            86 46678888888888888887622 1  1111 23467888888876544    59999999999888631  2221 


Q ss_pred             ---hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          472 ---AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       472 ---~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                         .....+|.+.+++.+++..++..|+.+|.+++.....   .......+|.+..++.+.++.+|..|+.+|..+...-
T Consensus       257 ~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          257 QILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence               2355799999999999999999999999999842211   1124567899999999999999999999999998763

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=99.17  E-value=8.5e-08  Score=106.07  Aligned_cols=485  Identities=12%  Similarity=0.047  Sum_probs=267.5

Q ss_pred             hhHHHhhhc-CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhh-cCCCCcchhhHHhhhhhhc----cCCCHHHH
Q 007863           88 LPPLETLCT-VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA-AGEWFTARVSSCGLFHVAY----PSAPEALK  161 (587)
Q Consensus        88 ~~~l~~l~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~-~~~~~~~r~~a~~l~~~~~----~~~~~~~~  161 (587)
                      ...+....+ +.+..+|..|.+.|.++-+.-  +    .+......+. .+.+..+|..|...+....    ...+++.+
T Consensus        14 ~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p--~----~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k   87 (1204)
T 3a6p_A           14 VKAVTVMMDPNSTQRYRLEALKFCEEFKEKC--P----ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEK   87 (1204)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC--T----THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHH
T ss_pred             HHHHHHHhCCCCChHHHHHHHHHHHHHHhCc--h----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence            334444333 236778888888887765432  1    1111222222 3445667777776665542    33455544


Q ss_pred             HHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccC
Q 007863          162 TELRTIYRQLCQ-------DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE  234 (587)
Q Consensus       162 ~~l~~~l~~l~~-------~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~  234 (587)
                      ..+...+...+.       +..+.||..++.++..++..--. ..++.+++.+.++++. ++..+..+..+|..+.+.+.
T Consensus        88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~  165 (1204)
T 3a6p_A           88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVV  165 (1204)
T ss_dssp             HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHc
Confidence            444444443322       14689999999999999887432 4567777777777765 35567778888888765421


Q ss_pred             h-----h-----------hhhhchHHHHHHhcCC-------------------CchHHHHHHHHHHHHHHHHhCCCCc--
Q 007863          235 P-----Q-----------DCVAHILPVIVNFSQD-------------------KSWRVRYMVANQLYELCEAVGPEPT--  277 (587)
Q Consensus       235 ~-----~-----------~~~~~l~~~l~~~~~d-------------------~~~~vR~~a~~~l~~l~~~~~~~~~--  277 (587)
                      .     .           ...+.+++.+...+.+                   .+..++..+++++.......+....  
T Consensus       166 ~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~  245 (1204)
T 3a6p_A          166 TFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITA  245 (1204)
T ss_dssp             TSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHT
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHh
Confidence            1     0           0112344444444432                   2334666666666544332221110  


Q ss_pred             -ccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhC-HHHH---HHhH----HHHHhHhc--------CCCcHHHHHHHH
Q 007863          278 -RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILN-PELA---IQHI----LPCVKELS--------SDSSQHVRSALA  340 (587)
Q Consensus       278 -~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~-~~~~---~~~~----~~~l~~~~--------~d~~~~vr~~a~  340 (587)
                       ...+++.+..++.+  +++|.+|+.+|..+..... ++..   ...+    +..+....        .+.+..++...+
T Consensus       246 ~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~  323 (1204)
T 3a6p_A          246 ENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC  323 (1204)
T ss_dssp             TTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence             12478888877775  5789999999999987443 2211   1111    11122221        233456777777


Q ss_pred             HHHHhhhhhhc----------hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc--hh-h---HhhhhHHHHHH
Q 007863          341 TVIMGMAPILG----------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--ID-L---LSQSLLPAIVE  404 (587)
Q Consensus       341 ~~l~~l~~~~~----------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~--~~-~---~~~~~~~~l~~  404 (587)
                      +.+..++....          .......+++.+..++.+++..|-..++.....+.+...  .. .   +...+++.+..
T Consensus       324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~  403 (1204)
T 3a6p_A          324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMT  403 (1204)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence            77766653221          112245788899999998888888887776666654431  11 1   22333333311


Q ss_pred             Hh------cCC---------------------CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCC----------
Q 007863          405 LA------EDR---------------------HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKD----------  447 (587)
Q Consensus       405 ~~------~~~---------------------~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d----------  447 (587)
                      .+      .+.                     -+..|+.....+..++...+ ....+.+.+.+...+.+          
T Consensus       404 ~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~  482 (1204)
T 3a6p_A          404 NLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSC  482 (1204)
T ss_dssp             HHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC---------
T ss_pred             HHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcccccccc
Confidence            01      000                     13456666666666655432 22233344444333221          


Q ss_pred             ---------------CchHHHHHHHHHHHHHHHHh---C-hhhhhhchHHHHHhhh---cCCccHHHHHHHHHHHHhhcc
Q 007863          448 ---------------KVYSIRDAAANNVKRLAEEF---G-PDWAMQHIVPQVLEMI---NNPHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       448 ---------------~~~~vr~~a~~~l~~l~~~~---~-~~~~~~~~~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~  505 (587)
                                     +.|...++....+..+.+.+   . .+.....+.|.++..+   ...++.+|...+.+++.+...
T Consensus       483 ~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~  562 (1204)
T 3a6p_A          483 SAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPF  562 (1204)
T ss_dssp             --------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGG
T ss_pred             cccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH
Confidence                           23344555555555554433   1 1111113455565542   334678999999999988886


Q ss_pred             cCh-HHHHHhHHHHHHhhcCC------------CCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCC---Cc
Q 007863          506 MGS-EITCSQLLPVVINASKD------------RVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP---DV  567 (587)
Q Consensus       506 ~~~-~~~~~~~l~~l~~~l~d------------~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~---~~  567 (587)
                      +.. ..+...++..++..+.+            .+.++|..|+.++..++...+..  ++.+.+...+..+....   +.
T Consensus       563 ~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~  642 (1204)
T 3a6p_A          563 VTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQ  642 (1204)
T ss_dssp             GGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCH
T ss_pred             HhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccH
Confidence            542 23566677767766555            23479999999999999887653  44455555555544322   24


Q ss_pred             cHHHHHHHHHHHHHHH
Q 007863          568 DVRFFATQALQSKDQV  583 (587)
Q Consensus       568 ~Vr~~a~~al~~l~~~  583 (587)
                      .=+.....|+..++..
T Consensus       643 ~e~~~L~eal~~ia~~  658 (1204)
T 3a6p_A          643 MEKCALMEALVLISNQ  658 (1204)
T ss_dssp             HHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            4456666666666433

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.17  E-value=4.6e-08  Score=78.03  Aligned_cols=215  Identities=15%  Similarity=0.156  Sum_probs=153.3

Q ss_pred             HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHh-cCCCChHHHHHHHHHhHHhhhhhchhhHh
Q 007863          317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLS  395 (587)
Q Consensus       317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~i~~~~~~~~~~  395 (587)
                      .+.++..+..++.|.-|.|+..++..+..+++..+. -+. -++.-+..+ -+++.-..-+..+++++.++.. .++ ..
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~e-pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe-~v  105 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYE-PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPE-LV  105 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHH-HH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHH-HHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHH-HH
Confidence            355677778888888899999999888888766542 111 112222222 3456666667778888877643 222 33


Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhc
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQH  475 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  475 (587)
                      ..++|.+..-..-.++++|......++.++...+ + ....+..-+..++.+++..-|.+|++.++.+.. .+.. +...
T Consensus       106 ~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe-n~~~-yv~P  181 (253)
T 2db0_A          106 KSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-M-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE-NSFK-YVNP  181 (253)
T ss_dssp             HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-H-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT-TTHH-HHGG
T ss_pred             HhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-H-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-cCcc-ccCc
Confidence            5678888777666788899998888888887532 2 234455566778889998889888888776543 1222 4577


Q ss_pred             hHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          476 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       476 ~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                      ++|.+..++.|.+..||..++.++++++..-+.   ...++-..+.-++|++..|....-.+|+.+.
T Consensus       182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~  245 (253)
T 2db0_A          182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLL  245 (253)
T ss_dssp             GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999874322   4455555666689999999999999888775

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.16  E-value=4.7e-10  Score=103.11  Aligned_cols=182  Identities=15%  Similarity=0.156  Sum_probs=137.7

Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHH-------HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh---
Q 007863          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW---  471 (587)
Q Consensus       402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---  471 (587)
                      +.+.+.+.+|..|..+++.+..+..........       ..+.+.+...+.|.+..|...++.++..++..++...   
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            456788999999999999987776543222111       1235667788899999999999999999987665431   


Q ss_pred             -----hhhchHHHHHhh-hcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          472 -----AMQHIVPQVLEM-INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       472 -----~~~~~~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                           +...++|.+.+- +.++...+|..+..++..++......   ..++..+...+++.+|.+|..++.+|..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                 235678877764 78888999999999998887654432   346677888899999999999999999999887


Q ss_pred             chH-----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhhc
Q 007863          546 DQS-----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       546 ~~~-----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      |..     .....+++.+..++.|++++||..|..++..+...+|.
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~  216 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN  216 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence            653     34456777788889999999999999999999988874

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.15  E-value=7.9e-10  Score=102.59  Aligned_cols=292  Identities=13%  Similarity=0.038  Sum_probs=166.6

Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhccc
Q 007863          154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLL  233 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~  233 (587)
                      +.++......++.-+.+++.+++...|+-.--++..+.+. + +... ...+.+.+-++++++.+|..|+++++.+..  
T Consensus        59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~-~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--  133 (355)
T 3tjz_B           59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-A-EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITD--  133 (355)
T ss_dssp             CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-S-SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--
T ss_pred             CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-H-HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--
Confidence            3444445556777778899999999999887777766654 2 2233 567888888999999999999999998865  


Q ss_pred             ChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH
Q 007863          234 EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP  313 (587)
Q Consensus       234 ~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~  313 (587)
                        .+..+.+.+.+.+.+.|+++.||+.|+-+...+....+ +. ...+++.+.+++.|.++.|..+|+..+..+... ++
T Consensus       134 --~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e~-v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~  208 (355)
T 3tjz_B          134 --STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-DV-VKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DR  208 (355)
T ss_dssp             --TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-HH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CH
T ss_pred             --HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-HH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-ch
Confidence              33577888999999999999999999988877754321 11 235788888899999999999999888888753 22


Q ss_pred             HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh
Q 007863          314 ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  393 (587)
Q Consensus       314 ~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~  393 (587)
                      . ...++++.+.+. .-.++......++.+..++..- .....+.+.+.+...++..++.|...++.++..+.. .+...
T Consensus       209 ~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~~  284 (355)
T 3tjz_B          209 L-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAKE  284 (355)
T ss_dssp             H-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC---------
T ss_pred             H-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHHH
Confidence            1 224444544331 1224555555666554444321 012345678888999999999999999999988754 22222


Q ss_pred             HhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863          394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR  462 (587)
Q Consensus       394 ~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                       .....+.+..++.++++.+|..+++.+..+....+.-  ....-.-+..++.|++..++.-|+.+|-+
T Consensus       285 -~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~--v~~~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          285 -LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA--VTACNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             ----CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred             -HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--HHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence             2334566667788888899999999988887653321  23344456778889998888888776644

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.12  E-value=7.4e-07  Score=95.66  Aligned_cols=478  Identities=7%  Similarity=0.022  Sum_probs=266.7

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhcc----CCCHH----HHHHHHHHH
Q 007863           97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYP----SAPEA----LKTELRTIY  168 (587)
Q Consensus        97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~----~~~~~----~~~~l~~~l  168 (587)
                      ++++..|+.|-+.|..+-+.-  + .+..+..++   ..+.+..+|..|+..+.....    ..+++    .++.+++.+
T Consensus        39 ~p~~~~r~qA~~~L~q~q~sp--~-aw~~~~~iL---~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l  112 (1073)
T 3gjx_A           39 HGEGAQQRMAQEVLTHLKEHP--D-AWTRVDTIL---EFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLI  112 (1073)
T ss_dssp             CSSHHHHHHHHHHHHTSSCCS--C-HHHHHTCC------CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCc--h-HHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHH
Confidence            345556777766665543321  1 111111111   123345666666665544322    34444    455566666


Q ss_pred             HHhcCC-----CCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh--------
Q 007863          169 RQLCQD-----DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP--------  235 (587)
Q Consensus       169 ~~l~~~-----~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~--------  235 (587)
                      .....+     .++.++...+.++..++...-+ ..++.+++-+...++.. +..+......|..+.+.+..        
T Consensus       113 ~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P-~~Wp~fi~dLv~~~~~~-~~~~~~~L~IL~~L~EEV~d~~~~~l~~  190 (1073)
T 3gjx_A          113 IKTSSDPTCVEKEKVYIGKLNMILVQILKQEWP-KHWPTFISDIVGASRTS-ESLCQNNMVILKLLSEEVFDFSSGQITQ  190 (1073)
T ss_dssp             HHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHTTSHHHHBCH
T ss_pred             HHHccCccccccchHHHHHHHHHHHHHHHHhCh-hhccHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhcccccccH
Confidence            555443     3578889999999998876432 23555566555555432 44556666777776655321        


Q ss_pred             h----------hhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHH-HHhcCCChHHHHHHHHH
Q 007863          236 Q----------DCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAY-VRLLRDNEAEVRIAAAG  302 (587)
Q Consensus       236 ~----------~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l-~~~l~d~~~~vr~~a~~  302 (587)
                      .          ...+.+++.+...++ ..+..+...+.++++.+...++-+. ....+++.+ ..++.+  ++.|.+|+.
T Consensus       191 ~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~~--~~~r~aA~d  268 (1073)
T 3gjx_A          191 VKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLNV--PMFRNVSLK  268 (1073)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSSS--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcCC--hHHHHHHHH
Confidence            0          112335555555543 4577788888899998877655322 234678877 577754  679999999


Q ss_pred             hHHHHHHhhCHH--HHHHhHH----HHHhHhc-------------CCCcHHHHHHHHHHHHhhhhhhch------H--HH
Q 007863          303 KVTKICRILNPE--LAIQHIL----PCVKELS-------------SDSSQHVRSALATVIMGMAPILGK------D--AT  355 (587)
Q Consensus       303 ~l~~l~~~~~~~--~~~~~~~----~~l~~~~-------------~d~~~~vr~~a~~~l~~l~~~~~~------~--~~  355 (587)
                      +|..+...-.++  .....++    ..+...+             .+.+...-...+..+..+++....      +  ..
T Consensus       269 cL~eIv~k~~~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~  348 (1073)
T 3gjx_A          269 CLTEIAGVSVSQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREA  348 (1073)
T ss_dssp             HHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHH
Confidence            999987641111  1111111    1111111             222233334444455444432211      1  11


Q ss_pred             HHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--------------------hHhhhhHHHHHHH-------hc-
Q 007863          356 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--------------------LLSQSLLPAIVEL-------AE-  407 (587)
Q Consensus       356 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--------------------~~~~~~~~~l~~~-------~~-  407 (587)
                      ....+..+..+..-++.++-..+......+...+-.+                    .....+.|.+.++       +. 
T Consensus       349 l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~  428 (1073)
T 3gjx_A          349 LMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAK  428 (1073)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCC
Confidence            2223334455556667888777776666555433211                    0111122222221       11 


Q ss_pred             --------CCC-----c--------HHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHH
Q 007863          408 --------DRH-----W--------RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLA  464 (587)
Q Consensus       408 --------~~~-----~--------~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~  464 (587)
                              ++.     +        ..+...-+.+..+. .++.......+.+.+.+.+.  ..+|..+++++-++|.++
T Consensus       429 P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa  507 (1073)
T 3gjx_A          429 PEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS  507 (1073)
T ss_dssp             SCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT
T ss_pred             CccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH
Confidence                    010     0        11222222333332 34444444555666655544  356999999999999997


Q ss_pred             HHhChh---hhhhchHHHHHhhhcCC-----ccHHHHHHHHHHHHhhcccChH-HHHHhHHHHHHhhcCCCCccHHHHHH
Q 007863          465 EEFGPD---WAMQHIVPQVLEMINNP-----HYLYRMTILQAISLLAPVMGSE-ITCSQLLPVVINASKDRVPNIKFNVA  535 (587)
Q Consensus       465 ~~~~~~---~~~~~~~~~l~~~l~~~-----~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d~~~~vR~~a~  535 (587)
                      ..+..+   .+...+++.+..+...+     ...++...+..+|...+.+... .+.+.++..++..+.++++.|...|+
T Consensus       508 g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~  587 (1073)
T 3gjx_A          508 GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMAC  587 (1073)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHH
T ss_pred             CcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            666542   24455666666554333     2345666668888888765432 37888888999999999999999999


Q ss_pred             HHHHHHHhhhchH----------HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          536 KVLQSLIPIVDQS----------VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       536 ~~l~~l~~~~~~~----------~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      .++..++...+..          ++...++..+.....+=.++-.....+|++.+.+.++
T Consensus       588 ~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p  647 (1073)
T 3gjx_A          588 DTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQT  647 (1073)
T ss_dssp             HHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCC
Confidence            9999998886543          2445555555555556566666777777777776554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.10  E-value=1e-08  Score=90.42  Aligned_cols=180  Identities=13%  Similarity=0.158  Sum_probs=130.8

Q ss_pred             HHhcCCChHHHHHHHHHhHHHHHHhhCHHH--HHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH------HHHH
Q 007863          286 VRLLRDNEAEVRIAAAGKVTKICRILNPEL--AIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD------ATIE  357 (587)
Q Consensus       286 ~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~------~~~~  357 (587)
                      ...+.+.++.-|..++..|.........+.  ..+.+++.+.-.+.|+|..|-..+++.+..+...++..      ....
T Consensus        52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~  131 (266)
T 2of3_A           52 MSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS  131 (266)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            333444456666666666655544321111  11224454443455889999888888888876655321      1235


Q ss_pred             hHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH
Q 007863          358 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  437 (587)
Q Consensus       358 ~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  437 (587)
                      .++|.+..-+.|....||..+-..+..+....++    ..+.+.+.+.+.+.||++|..++..+..+.+..|...  ...
T Consensus       132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~--~~~  205 (266)
T 2of3_A          132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP--LKS  205 (266)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG--GGG
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc--ccc
Confidence            6889999999999999999998888887766554    3577777778899999999999999999999888763  335


Q ss_pred             H---HHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh
Q 007863          438 G---ALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW  471 (587)
Q Consensus       438 ~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  471 (587)
                      +   |.+..++.|++..||.+|+.++..+....|...
T Consensus       206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            6   888899999999999999999999999888774

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.09  E-value=2.4e-08  Score=83.49  Aligned_cols=216  Identities=13%  Similarity=0.112  Sum_probs=168.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh-hh
Q 007863          162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP-QD  237 (587)
Q Consensus       162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-~~  237 (587)
                      +..+..+..++.+.|+.++..+..+|+.+.+..++   ....+.+++-+..++.++++.|-..|.+++..+....+. +.
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            44777888999999999999999999999998643   456678899999999999999999999999999988775 44


Q ss_pred             hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHH
Q 007863          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI  317 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (587)
                      ....+...+.....+++.-.+..+++.++.+    ..-...+.+...+.+++++.+.+++.+++.++-+++...+.....
T Consensus       112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl----kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~  187 (265)
T 3b2a_A          112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKL----QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHL  187 (265)
T ss_dssp             HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC----CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCG
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHhCcC----CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHH
Confidence            5677889999999999999999999999987    222224568899999999999999999999999999877665555


Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHH---HhHHHHHHHhc-CCCChHHHHHHHHH
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATI---EQLLPIFLSLL-KDEFPDVRLNIISK  381 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~~l~~~l-~d~~~~vr~~a~~~  381 (587)
                      +.++.-+..++++.++.++.-|..++-.+...-=.+...   ..+......+. ....|.+|..|-..
T Consensus       188 ~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v  255 (265)
T 3b2a_A          188 TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKV  255 (265)
T ss_dssp             GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            677777888889999999999999998886542111111   12233333443 44556666655443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.09  E-value=3.7e-09  Score=98.15  Aligned_cols=284  Identities=13%  Similarity=0.037  Sum_probs=134.8

Q ss_pred             hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH  319 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      ..+++.+.+++..++...|+...-.+..++.. .++. . -....+.+=++++++-+|..|+++++.+..    +...+.
T Consensus        67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~-i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~----~~m~~~  139 (355)
T 3tjz_B           67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV-I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD----STMLQA  139 (355)
T ss_dssp             HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG-G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC----TTTHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH-H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC----HHHHHH
Confidence            34566667777778888888777766655543 1111 1 345566666677778888888888877743    223466


Q ss_pred             HHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhH
Q 007863          320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  399 (587)
Q Consensus       320 ~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~  399 (587)
                      +.+.+++.+.|.++.||.+|+-+...+....+  +..+.+++.+..++.|.++.|...++..+..+...- .. ....++
T Consensus       140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~-a~~kLv  215 (355)
T 3tjz_B          140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RL-AVSKMI  215 (355)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HH-HHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hH-HHHHHH
Confidence            77788888888888888888887776664432  234567777888888888888888888887776431 11 112233


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHH
Q 007863          400 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQ  479 (587)
Q Consensus       400 ~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  479 (587)
                      +.+.+. .-.++......++.+..++..- .......+.+.+..++++.+..|...|++++-.+.. .+.. ......+.
T Consensus       216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~  291 (355)
T 3tjz_B          216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSV  291 (355)
T ss_dssp             HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred             HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHH
Confidence            322210 0112332333333332222210 011234567777777788888888888887766544 2211 12233444


Q ss_pred             HHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHH
Q 007863          480 VLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS  540 (587)
Q Consensus       480 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  540 (587)
                      +..++.+++..+|..|+..+..+....+.  .....-..+.++++|++..++.-|+-+|-.
T Consensus       292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             HHHHHHSSSSSSHHHHHHCC-----------------------------------------
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence            44555666666777777777766654322  233445566667777777776666655543

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.08  E-value=7.6e-09  Score=94.69  Aligned_cols=171  Identities=18%  Similarity=0.124  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHHHhhChh--hHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhc-
Q 007863          413 VRLAIIEYIPLLASQLGVG--FFDDKLGALCMQ-WLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMIN-  485 (587)
Q Consensus       413 vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~-  485 (587)
                      -|..++..+..++......  +.....+|.++. ++.++++.||..|+.+|+.++.....   .......+|.+..++. 
T Consensus        56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~  135 (296)
T 1xqr_A           56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR  135 (296)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence            4555555665555433211  111234677777 89999999999999999998853211   1233567888888887 


Q ss_pred             CCccHHHHHHHHHHHHhhcccCh--HHH-HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHH
Q 007863          486 NPHYLYRMTILQAISLLAPVMGS--EIT-CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLV  559 (587)
Q Consensus       486 ~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~  559 (587)
                      +++..+|..|+++|++++.....  +.+ ....+|.+..+++++++.+|..++.+|+.++..-..   ......++|.|.
T Consensus       136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv  215 (296)
T 1xqr_A          136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV  215 (296)
T ss_dssp             CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence            45778999999999999864433  122 346888999999999999999999999998765221   234457889999


Q ss_pred             HhcCCCCccHHHHHHHHHHHHHHH
Q 007863          560 ELSEDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       560 ~l~~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      .++.+++++||..|..|++.+...
T Consensus       216 ~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          216 ALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHcCCChhHHHHHHHHHHHHHhC
Confidence            998999999999999999988754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.08  E-value=3e-08  Score=82.91  Aligned_cols=220  Identities=12%  Similarity=0.070  Sum_probs=169.9

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--hhhH
Q 007863          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFF  433 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~  433 (587)
                      .+..+..++.|.++.++..++..+.++.+....   ....+.++|.+..+..++|.++-..+++++..+....+  ++. 
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~-  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT-  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH-
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH-
Confidence            456788888999999999999999999877532   12346788888888999999999999999998887654  333 


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHH
Q 007863          434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCS  513 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~  513 (587)
                      ...+...+...+.+++.-++..|+..++.+ +   .......+...+..++.+++.+++.+++.++.+++...+.....+
T Consensus       113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-k---v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~  188 (265)
T 3b2a_A          113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-Q---PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT  188 (265)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-C---BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-C---cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence            356788888888999999999999999988 2   221246678888888888999999999999999998777555667


Q ss_pred             hHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH---HHHHhHHHHHHHhc-CCCCccHHHHHHHHHHHHHHH
Q 007863          514 QLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---VVEKSIRPCLVELS-EDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       514 ~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      .++..+-.+++.+++.++..|+.++..+...-=.+   +-...+.....++. ....|.+|..|...-..+-+.
T Consensus       189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~  262 (265)
T 3b2a_A          189 LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV  262 (265)
T ss_dssp             GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence            78888888899999999999999999987652111   11234455555665 677888999988877666543

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.07  E-value=1.5e-08  Score=89.35  Aligned_cols=148  Identities=12%  Similarity=0.100  Sum_probs=121.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh-----h-hHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863          162 TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA-----H-LKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       162 ~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~-----~-~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      +.+++.+.-.+.|.++.|-..+++.|..+...+.+.     . -...++|.+..-++|..+.||..+-.++..+....++
T Consensus        86 Dll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~  165 (266)
T 2of3_A           86 DLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP  165 (266)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH
Confidence            334555554456889999999999999988877542     1 2367899999999999999999999999888776553


Q ss_pred             hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchH---HHHHHhcCCChHHHHHHHHHhHHHHHHhhC
Q 007863          236 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVV---PAYVRLLRDNEAEVRIAAAGKVTKICRILN  312 (587)
Q Consensus       236 ~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~---~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                          ..+++.+...+.++||++|..++..++.+....|..  ....+   |.+.+++.|++..||.+|+.++..+....|
T Consensus       166 ----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G  239 (266)
T 2of3_A          166 ----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG  239 (266)
T ss_dssp             ----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence                457777778889999999999999999999988865  34567   999999999999999999999999999888


Q ss_pred             HHH
Q 007863          313 PEL  315 (587)
Q Consensus       313 ~~~  315 (587)
                      ...
T Consensus       240 d~v  242 (266)
T 2of3_A          240 DQM  242 (266)
T ss_dssp             THH
T ss_pred             HHH
Confidence            764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.06  E-value=2.1e-09  Score=101.49  Aligned_cols=256  Identities=11%  Similarity=0.051  Sum_probs=171.0

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchH
Q 007863          164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHIL  243 (587)
Q Consensus       164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  243 (587)
                      +...+..-+-|+.|++|..|+-+|..+.+..+...-..       . ..+.+-.+|..++-++.++++.++++-      
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~-~~N~DLAvRLLCVLALDRFGDYVSDqV------  240 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------I-RVDSKLFSKIYEILVTDKFNDFVDDRT------  240 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------C-CCCTTHHHHHHHHHHHBCCBBCSSSSC------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------c-cccHHHHHHHHHHHHhccccccccCee------
Confidence            66666677778999999999999999998765311000       1 112255678888888887777655321      


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHH
Q 007863          244 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPC  323 (587)
Q Consensus       244 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~  323 (587)
                                -..||++++++|+.+ ..++.+   ..++..++..+....|+||.+++-.|..+...+..   .+.+++.
T Consensus       241 ----------VAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~a  303 (800)
T 3oc3_A          241 ----------VAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRK  303 (800)
T ss_dssp             ----------BCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHH
T ss_pred             ----------eeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHH
Confidence                      235999999999998 776655   34555555556778899999999988888333332   4778889


Q ss_pred             HhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCC--hHHHHHHHHHhHHhhhhhchhhHhhhhHHH
Q 007863          324 VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPA  401 (587)
Q Consensus       324 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~  401 (587)
                      +...++|.+..||..|+.++..++   .+ ...+.++..++..|.+.+  ..--......|+.++..-......+.++|.
T Consensus       304 VL~GL~D~DDDVRAVAAetLiPIA---~p-~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPR  379 (800)
T 3oc3_A          304 LVSLLSSPDEDIKLLSAELLCHFP---IT-DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD  379 (800)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHTTSC---CS-STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGG
T ss_pred             HHhhcCCcccHHHHHHHHHhhhhc---ch-hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHH
Confidence            999999999999999999998888   11 223455555555554321  122223333444444322111112367888


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 007863          402 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK  461 (587)
Q Consensus       402 l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  461 (587)
                      +..++.++-..||.++++.+..+.   .    .+.+--++.+.+-+++.+|+..+.+.+.
T Consensus       380 L~PFLRHtITSVR~AVL~TL~tfL---~----~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          380 IFPCFTSPVPEVRTSILNMVKNLS---E----ESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             TGGGGTCSSHHHHHHHHHHTTTCC---C----HHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHHH---h----hhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            888889999999999998886655   1    2223334556677889999999988885

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.06  E-value=2.4e-08  Score=91.38  Aligned_cols=208  Identities=12%  Similarity=0.053  Sum_probs=140.4

Q ss_pred             HHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHH-HhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcC
Q 007863          373 DVRLNIISKLDQVNQVIGID--LLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLK  446 (587)
Q Consensus       373 ~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~-~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~  446 (587)
                      +-|..++..|..++......  ......+|.+.. ++.+++..+|..++.+++.++..-.   ...+....+|.++.++.
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            45666777777776654322  122356777777 8888888899988888888875321   11122345777778777


Q ss_pred             -CCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HHHHHhHHHHH
Q 007863          447 -DKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EITCSQLLPVV  519 (587)
Q Consensus       447 -d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l  519 (587)
                       +++..+|..|+.+|+.++.....   .+.....+|.+..++.+++..+|..+++++.+++.....   ......++|.+
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~L  214 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL  214 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHH
Confidence             45788999999999998864332   123356888898888888999999999999998765221   12345688999


Q ss_pred             HhhcCCCCccHHHHHHHHHHHHHhhhchH---------HHHHhHHHHHHHhc-CCCCccHHHHHHHHHHHH
Q 007863          520 INASKDRVPNIKFNVAKVLQSLIPIVDQS---------VVEKSIRPCLVELS-EDPDVDVRFFATQALQSK  580 (587)
Q Consensus       520 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---------~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al~~l  580 (587)
                      ..++.++++.+|..++.+|+.+.......         .+...+-+.+..+. .+...++...+.+.+.++
T Consensus       215 v~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             HHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988763211         11222223333343 233467777777766654

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.02  E-value=1.1e-08  Score=94.02  Aligned_cols=183  Identities=11%  Similarity=0.069  Sum_probs=123.2

Q ss_pred             HHHhcCCChHHHHHHHHHhHHHHHHhhCHHHH-------HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH----
Q 007863          285 YVRLLRDNEAEVRIAAAGKVTKICRILNPELA-------IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD----  353 (587)
Q Consensus       285 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~-------~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----  353 (587)
                      +.+.+.+.+|..|..++..+..+.........       ...+.+.+.+.+.|+|..|...++.++..++..++..    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            34556666666666666666655543222110       1234455667777888888888888877776654321    


Q ss_pred             ----HHHHhHHHHHH-HhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 007863          354 ----ATIEQLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  428 (587)
Q Consensus       354 ----~~~~~l~~~l~-~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~  428 (587)
                          .....++|.+. +.+.|..+.+|..+..++..++...+..   ..+++.+...+++.+|++|..++.++..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                23345666655 4588888999988888887776544322   345666667788999999999999999988887


Q ss_pred             Chhh-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh
Q 007863          429 GVGF-----FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD  470 (587)
Q Consensus       429 ~~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~  470 (587)
                      |...     ..+.+++.+..++.|.+..||.+|..+++.+...+|..
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            7543     23456777788899999999999999999999888854

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.02  E-value=7e-09  Score=98.06  Aligned_cols=259  Identities=13%  Similarity=0.008  Sum_probs=173.6

Q ss_pred             CcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhh
Q 007863            7 PLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANV   86 (587)
Q Consensus         7 ~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~   86 (587)
                      ++.-++.|...|-++.|++|++|+-+|.++.+..|....+.       ...+.+--+|....-+|.+|..++++..    
T Consensus       172 PfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-------~~~N~DLAvRLLCVLALDRFGDYVSDqV----  240 (800)
T 3oc3_A          172 VLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-------IRVDSKLFSKIYEILVTDKFNDFVDDRT----  240 (800)
T ss_dssp             GGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-------CCCCTTHHHHHHHHHHHBCCBBCSSSSC----
T ss_pred             HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-------ccccHHHHHHHHHHHHhccccccccCee----
Confidence            34457888899999999999999999999888776422221       1112244577777788899988887422    


Q ss_pred             hhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHH
Q 007863           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT  166 (587)
Q Consensus        87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~  166 (587)
                                  -..||+.++++|+.+ .+++++  ...+..++ .....+.|.+|..+.-.+..+......  .+.+++
T Consensus       241 ------------VAPVRETaAQtLGaL-~hLp~e--~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~  302 (800)
T 3oc3_A          241 ------------VAPVRDAAAYLLSRI-YPLIGP--NDIIEQLV-GFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCR  302 (800)
T ss_dssp             ------------BCHHHHHHHHHHHHH-TTTSCS--CCHHHHHT-TGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHH
T ss_pred             ------------eeehHHHHHHHHHHH-HhCChh--HHHHHHHH-hhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHH
Confidence                        367999999999999 888766  23333333 334555678887776655555222222  678889


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCc--hhHHHHHHHHHHHHhcccChhhhhhchHH
Q 007863          167 IYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQ--DSVRLLAVEGCGALGKLLEPQDCVAHILP  244 (587)
Q Consensus       167 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~--~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  244 (587)
                      .+...++|++..||..|+.+|..++    .+...+.++..+...+.+-+  ...-......|+.+...-......+.++|
T Consensus       303 aVL~GL~D~DDDVRAVAAetLiPIA----~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVP  378 (800)
T 3oc3_A          303 KLVSLLSSPDEDIKLLSAELLCHFP----ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLK  378 (800)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHTTSC----CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGG
T ss_pred             HHHhhcCCcccHHHHHHHHHhhhhc----chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHH
Confidence            9999999999999999999998887    22444555555555554332  22233344555555544332222347888


Q ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHH
Q 007863          245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVT  305 (587)
Q Consensus       245 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  305 (587)
                      .+..++.+.-..||.++.+++..+.       ..+-+--++..++=+.+.+|+..+.+.+.
T Consensus       379 RL~PFLRHtITSVR~AVL~TL~tfL-------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          379 DIFPCFTSPVPEVRTSILNMVKNLS-------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GTGGGGTCSSHHHHHHHHHHTTTCC-------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHhhhcCCcHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            8888899999999999999887654       11223344455666777889888888775

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.96  E-value=6.9e-11  Score=94.75  Aligned_cols=121  Identities=16%  Similarity=0.165  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHh
Q 007863          435 DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQ  514 (587)
Q Consensus       435 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~  514 (587)
                      +.-.+.+...++|+++.+|..|+..|+.+    |..     -++.+.+.+.|+++.+|..++.+++.+..        ..
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~-----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~   73 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRM----GDE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ER   73 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSC----SST-----THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HH
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch-----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HH
Confidence            44566777888999999999998888754    222     25888888899999999999999988763        34


Q ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863          515 LLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       515 ~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l  580 (587)
                      .++.+...++|+++.||..++.+|+.+..        ...+|.|.+++.|+++.||..|..+|+.+
T Consensus        74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           74 AVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             HHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence            57778888889999999999999998853        35678888888899999999999988653

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.92  E-value=1e-10  Score=93.68  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=66.3

Q ss_pred             chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhH
Q 007863          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHI  320 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  320 (587)
                      .-.+.+...++|+++.+|..|+..|+.+.    .    .. ++.+..+++|+++.||..|+.+|+.+..        +..
T Consensus        12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~----~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a   74 (131)
T 1te4_A           12 SGLVPRGSHMADENKWVRRDVSTALSRMG----D----EA-FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERA   74 (131)
T ss_dssp             ---------CCSSCCCSSSSCCSSTTSCS----S----TT-HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHH
T ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c----hH-HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHH
Confidence            34455566666666667766666655431    1    11 3666666666677777777766666532        223


Q ss_pred             HHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863          321 LPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       321 ~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                      ++.+..+++|+++.||..++.+++.+..        +..+|.+..+++|+++.||..++.+|++
T Consensus        75 ~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           75 VEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            4555555666677777777777666641        2234556666666666777776666654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.91  E-value=3.7e-08  Score=83.54  Aligned_cols=139  Identities=21%  Similarity=0.240  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHH-hcCCCchHHHHHHHHHHHHHHHHhCCCCcc
Q 007863          200 KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTR  278 (587)
Q Consensus       200 ~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~  278 (587)
                      .+.+++++..+.+++.++||..|+..++.. .      ....+++.+.. +..|++|.||..++..++.++...+.+   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            567888999999999999999999988877 2      13568888887 888999999999999999998744432   


Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863          279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  349 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                       ..++.+...++|++..||..|...+...+.........+.++|.+..+..|++..||.+....|..+++.
T Consensus       139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence             4678889999999999999999886543332111222356788899999999999999999999998865

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.76  E-value=6.5e-07  Score=95.31  Aligned_cols=386  Identities=9%  Similarity=0.011  Sum_probs=214.3

Q ss_pred             cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHhccc-CchhHHHHHHHHH
Q 007863          154 PSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA------AHLKSEIMSIFEELTQD-DQDSVRLLAVEGC  226 (587)
Q Consensus       154 ~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l  226 (587)
                      .+.++...+.+.+.+..++.+++..-..++++.++.+......      +..++.+.|++...+.+ -.++....=..++
T Consensus       499 rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i  578 (997)
T 1vsy_5          499 SGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLA  578 (997)
T ss_dssp             TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence            4555667788999999999999999999999999998764322      45777889998888873 3443322222222


Q ss_pred             HHHhcccChhhhhhchHHHHHHh-----cCCCchHHHHHHHHHHHHHHHHhCCCC-cccchHHHHHHhcCCChHHHHHHH
Q 007863          227 GALGKLLEPQDCVAHILPVIVNF-----SQDKSWRVRYMVANQLYELCEAVGPEP-TRSDVVPAYVRLLRDNEAEVRIAA  300 (587)
Q Consensus       227 ~~l~~~~~~~~~~~~l~~~l~~~-----~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a  300 (587)
                      ..+....++. ....++..+..+     ....+.......+..|..+....+-.. ....++..+.  +..+...||+..
T Consensus       579 ~~~~~~~Dpr-R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~I  655 (997)
T 1vsy_5          579 WWLPAVVDLR-RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAV  655 (997)
T ss_dssp             HHHHHHSCGG-GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHH
T ss_pred             HHHhcCCChh-hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHH
Confidence            3333332221 223344444221     111122222222333443433333211 1223333333  566778888888


Q ss_pred             HHhHHHHHHhhC----------------------------HHHHHHhHH---HHHhHhcC---C--C-----cH--HHHH
Q 007863          301 AGKVTKICRILN----------------------------PELAIQHIL---PCVKELSS---D--S-----SQ--HVRS  337 (587)
Q Consensus       301 ~~~l~~l~~~~~----------------------------~~~~~~~~~---~~l~~~~~---d--~-----~~--~vr~  337 (587)
                      ...|..+....-                            +..+.+.+.   ..+...-.   +  +     +.  ..-.
T Consensus       656 g~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~k  735 (997)
T 1vsy_5          656 AKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTS  735 (997)
T ss_dssp             HHHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHH
T ss_pred             HHHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHH
Confidence            888877665431                            011111111   11111111   0  1     11  1123


Q ss_pred             HHHHHHHhhhhhhch---HHHHHh-HHHHHHHhcCCCCh-HHHHH-HHHHhHHhhhhhchhhHhhhhHHHHHHHhc-CCC
Q 007863          338 ALATVIMGMAPILGK---DATIEQ-LLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRH  410 (587)
Q Consensus       338 ~a~~~l~~l~~~~~~---~~~~~~-l~~~l~~~l~d~~~-~vr~~-a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-~~~  410 (587)
                      +++..+.........   ..+... ++|.+..+.++.+. ++... +..++..+....-.....+.++..+.+... +++
T Consensus       736 Tvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~s  815 (997)
T 1vsy_5          736 TIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSS  815 (997)
T ss_dssp             HHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCS
T ss_pred             HHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCc
Confidence            344333333221111   112222 56666666555543 44444 444455554333233333445555555555 679


Q ss_pred             cHHHHHHHHHHHHHHHh----hChhhHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc
Q 007863          411 WRVRLAIIEYIPLLASQ----LGVGFFDDKLGALCMQWLKDKV-YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN  485 (587)
Q Consensus       411 ~~vr~~~~~~l~~l~~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~  485 (587)
                      | .|..++..+..+.-.    ++.+. ...+...+..++.|+. .+||+.|..+|+.++...+.......++..+.+.+.
T Consensus       816 W-~R~~~L~~lq~~~f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~  893 (997)
T 1vsy_5          816 N-QTKLQLAFIQHFLSAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLD  893 (997)
T ss_dssp             S-SHHHHHHHHHHHHHHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSST
T ss_pred             H-HHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            9 999999988766531    12222 3578888999999999 999999999999998754232122334444444331


Q ss_pred             C------------CccHHHHHHHHHHHHhhcccChH----HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          486 N------------PHYLYRMTILQAISLLAPVMGSE----ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       486 ~------------~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                      .            .+...|.+|+-+|+++...++-.    .+.+.++..+.....|+.+ ++.++-++++..-...
T Consensus       894 ~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH  968 (997)
T 1vsy_5          894 VNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVR  968 (997)
T ss_dssp             TTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred             hcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence            1            12267889999999998765432    3566777777777888655 9999999999876654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=98.70  E-value=1.4e-07  Score=79.99  Aligned_cols=139  Identities=16%  Similarity=0.123  Sum_probs=111.6

Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHH-hcCCChHHHHHHHHHhHHHHHHhhCHHHHH
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVR-LLRDNEAEVRIAAAGKVTKICRILNPELAI  317 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (587)
                      .+.++++...+.+++...||..|+..|+.. .      ....+++.+.. +..|+.|.||+.+..+++.++...+++   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            567888889999999999999999987766 2      13568888887 778999999999999999998755554   


Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  388 (587)
                       ..++.+...+.|++..||+.++...-..+.........+.++|.+..+..|++..||.++.++|..+++.
T Consensus       139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence             2567888889999999999999886544433222333456889999999999999999999999998765

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.37  E-value=0.00017  Score=71.34  Aligned_cols=226  Identities=16%  Similarity=0.204  Sum_probs=140.9

Q ss_pred             cchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHH---H--HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--
Q 007863          279 SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPEL---A--IQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--  351 (587)
Q Consensus       279 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~---~--~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--  351 (587)
                      ++-++.+..++++.+-.+|..+++.|..++..-+...   +  .+.-++.+..+++|+.+.+|..++-.+..+...-.  
T Consensus       121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~i  200 (651)
T 3grl_A          121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAI  200 (651)
T ss_dssp             THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHH
Confidence            4578899999999999999999999999998755431   1  13467889999999999999999999999876432  


Q ss_pred             -hHHHHHhHHHHHHHhcCCCCh----HHHHHHHHHhHHhhhhhchh--hHh-hhhHHHHHHHhcC----CCcHHHH--H-
Q 007863          352 -KDATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIGID--LLS-QSLLPAIVELAED----RHWRVRL--A-  416 (587)
Q Consensus       352 -~~~~~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~i~~~~~~~--~~~-~~~~~~l~~~~~~----~~~~vr~--~-  416 (587)
                       +-...+..++.+..++..+..    .|..-++..+..+...-...  .+. ...+|.+..+++.    ..|.-++  . 
T Consensus       201 QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~  280 (651)
T 3grl_A          201 QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNL  280 (651)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHH
Confidence             111234456666666665433    67777777777777553211  121 2345555555432    2354222  1 


Q ss_pred             --HHHHHHHHHHhhCh---------hhHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHhChh--hhh--------
Q 007863          417 --IIEYIPLLASQLGV---------GFFDDKLGALCMQWLKDK--VYSIRDAAANNVKRLAEEFGPD--WAM--------  473 (587)
Q Consensus       417 --~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~~~--~~~--------  473 (587)
                        ++..+..+...-+.         ......+++.+.+++..+  ...+|..|+.+++.+++.....  .|.        
T Consensus       281 ~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~  360 (651)
T 3grl_A          281 HLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNP  360 (651)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSS
T ss_pred             HHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCC
Confidence              22333333221111         111223556666665544  5689999999999988643221  121        


Q ss_pred             --hchHHHHHhhhcCC-ccHHHHHHHHHHHHhhc
Q 007863          474 --QHIVPQVLEMINNP-HYLYRMTILQAISLLAP  504 (587)
Q Consensus       474 --~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~  504 (587)
                        ..++..+..++++. ...+|.+++.++..+..
T Consensus       361 ~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          361 PRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             CEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             CcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence              22444445555544 47899999999988764

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.35  E-value=0.00027  Score=69.99  Aligned_cols=300  Identities=14%  Similarity=0.074  Sum_probs=175.9

Q ss_pred             ccHHHHHHHhcC-ccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc--C-CchHHHHHHHHHhcccccCcCCc---
Q 007863            9 YPIAVLIDELKN-DDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN--D-DDDEVLLAMAEELGVFIPYVGGL---   81 (587)
Q Consensus         9 ~~~~~l~~~l~s-~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~--~-~~~~v~~~~~~~l~~~~~~~~~~---   81 (587)
                      ++|+.|++++.+ .-.+-|+.|+..|..+++.+..+ ....-+|.+.+.+  | ++.+....+.+.|-.+...-+..   
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~   99 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVE   99 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccc
Confidence            479999999985 57899999999999987665433 2233344444422  2 34466666667664432211110   


Q ss_pred             --------c----hH------hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhh---Hh--hhhHHHHHHhhcCCC
Q 007863           82 --------E----YA------NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQD---VV--EHFIPLVKRLAAGEW  138 (587)
Q Consensus        82 --------~----~~------~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~---~~--~~ll~~~~~l~~~~~  138 (587)
                              +    +.      +.-++.|..++..++..+|..+++.|..++..-+...   +.  +.-+|.+..+.+++.
T Consensus       100 ~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r  179 (651)
T 3grl_A          100 ENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR  179 (651)
T ss_dssp             --------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS
T ss_pred             ccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch
Confidence                    0    11      2335667777889999999999999999998754421   21  234677888888888


Q ss_pred             CcchhhHHhhhhhhccCCCHH----HHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHHHhh--hhhHH-HHHHHH
Q 007863          139 FTARVSSCGLFHVAYPSAPEA----LKTELRTIYRQLCQDDM----PMVRRSAATNLGKFAATVEA--AHLKS-EIMSIF  207 (587)
Q Consensus       139 ~~~r~~a~~l~~~~~~~~~~~----~~~~l~~~l~~l~~~~~----~~vR~~a~~~l~~l~~~~~~--~~~~~-~i~~~l  207 (587)
                      ..+|..++.++..+.+...+-    ..+..++.+..++....    ..|-.-++..+..+.+....  ..+.+ ..+|.+
T Consensus       180 E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L  259 (651)
T 3grl_A          180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRM  259 (651)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGG
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence            889999999998887766442    11233455555444332    36666777777777765321  11111 122333


Q ss_pred             HHhcccCc----hh--HHH---HHHHHHHHHhcccCh---------hhhhhchHHHHHHhcCCC--chHHHHHHHHHHHH
Q 007863          208 EELTQDDQ----DS--VRL---LAVEGCGALGKLLEP---------QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYE  267 (587)
Q Consensus       208 ~~l~~d~~----~~--vr~---~a~~~l~~l~~~~~~---------~~~~~~l~~~l~~~~~d~--~~~vR~~a~~~l~~  267 (587)
                      ..+++.+.    |.  .-.   .+..++..+...-.+         ......+++.+.+++...  ...+|..|+.+++.
T Consensus       260 ~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~  339 (651)
T 3grl_A          260 KPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSE  339 (651)
T ss_dssp             GGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             HHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHH
Confidence            33443221    11  111   133333333322111         112334666666665543  67899999999988


Q ss_pred             HHHHhC------------CCCcccchHHHHHHhcCCC-hHHHHHHHHHhHHHHHH
Q 007863          268 LCEAVG------------PEPTRSDVVPAYVRLLRDN-EAEVRIAAAGKVTKICR  309 (587)
Q Consensus       268 l~~~~~------------~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~l~~  309 (587)
                      ++..-.            .....+.++..+..++.+. ...+|.+++.++..+..
T Consensus       340 ~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          340 VIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence            765211            1111223555555666554 47889999999998876

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.29  E-value=2.3e-05  Score=83.65  Aligned_cols=378  Identities=9%  Similarity=0.003  Sum_probs=201.4

Q ss_pred             hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh------hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHH
Q 007863          197 AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELC  269 (587)
Q Consensus       197 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~  269 (587)
                      ....+.+.+.+..+..|++..-...|++.++.+......      +..++.+.|.+.+.+. +-++.....=..++..+.
T Consensus       503 ~~~l~~l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~  582 (997)
T 1vsy_5          503 ELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLP  582 (997)
T ss_dssp             CCCGGGHHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence            466788999999999998888888899998887654332      3466778999999888 445444333333344333


Q ss_pred             HHhCCCCcccchHHHHHHhcC---C--C-hHHHHHHHHHhHHHHHHhhC---HHHHHHhHHHHHhHhcCCCcHHHHHHHH
Q 007863          270 EAVGPEPTRSDVVPAYVRLLR---D--N-EAEVRIAAAGKVTKICRILN---PELAIQHILPCVKELSSDSSQHVRSALA  340 (587)
Q Consensus       270 ~~~~~~~~~~~l~~~l~~~l~---d--~-~~~vr~~a~~~l~~l~~~~~---~~~~~~~~~~~l~~~~~d~~~~vr~~a~  340 (587)
                      ....+.. ...++..+.. ++   +  . ..-.....+..|..+....+   ++  .+.++..+.  ++++...||....
T Consensus       583 ~~~DprR-~~~L~e~l~~-~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~--~~~~l~~~~--l~h~y~~VRe~Ig  656 (997)
T 1vsy_5          583 AVVDLRR-SKTFFCHFIN-ADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPD--VGKLFDELV--FDHPYDQVRQAVA  656 (997)
T ss_dssp             HHSCGGG-CHHHHHHHTC-CCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC--CHHHHHHCC--SCCSCHHHHHHHH
T ss_pred             cCCChhh-hHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHHHHhcccccc--HHHHHHHHH--hCCChHHHHHHHH
Confidence            3322111 1123333311 11   1  1 11111111222222222211   11  133444444  7788899999999


Q ss_pred             HHHHhhhhhhc---h-------------------------HHHHHhHHHHHHHhc---C---C--CChHHHHHH---HHH
Q 007863          341 TVIMGMAPILG---K-------------------------DATIEQLLPIFLSLL---K---D--EFPDVRLNI---ISK  381 (587)
Q Consensus       341 ~~l~~l~~~~~---~-------------------------~~~~~~l~~~l~~~l---~---d--~~~~vr~~a---~~~  381 (587)
                      ..+..+....-   .                         ....+.+...+..+-   .   +  +....+...   ..+
T Consensus       657 ~~L~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kT  736 (997)
T 1vsy_5          657 KLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTST  736 (997)
T ss_dssp             HHHHHHHHTSCCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHH
T ss_pred             HHHHHHHHhhcccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHH
Confidence            88876654321   0                         111111111111110   0   1  000111111   112


Q ss_pred             hHHhh-hhhchh------hHhhh-hHHHHHHHhcCCCc-HHHHH-HHHHHHHHHHhhChhhHHHHHHHHHHHHcC-CCch
Q 007863          382 LDQVN-QVIGID------LLSQS-LLPAIVELAEDRHW-RVRLA-IIEYIPLLASQLGVGFFDDKLGALCMQWLK-DKVY  450 (587)
Q Consensus       382 l~~i~-~~~~~~------~~~~~-~~~~l~~~~~~~~~-~vr~~-~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~  450 (587)
                      +-... ..++..      .+... ++|.+..+.+.++. +.... +...+..++...-.....+.++..+..... +++|
T Consensus       737 vl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW  816 (997)
T 1vsy_5          737 IFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN  816 (997)
T ss_dssp             HHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS
T ss_pred             HHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH
Confidence            11111 111111      01111 44444444443332 33333 333344333322222223444444444444 6789


Q ss_pred             HHHHHHHHHHHHHHHHh----ChhhhhhchHHHHHhhhcCCc-cHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCC
Q 007863          451 SIRDAAANNVKRLAEEF----GPDWAMQHIVPQVLEMINNPH-YLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD  525 (587)
Q Consensus       451 ~vr~~a~~~l~~l~~~~----~~~~~~~~~~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d  525 (587)
                       +|..++..+..+.-..    +.+ -...+...+..++.|+. .+||+.|..+|+.+.+..+.......++..+.+.+..
T Consensus       817 -~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~  894 (997)
T 1vsy_5          817 -QTKLQLAFIQHFLSAELLQLTEE-EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDV  894 (997)
T ss_dssp             -SHHHHHHHHHHHHHHHTTTSCTT-HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence             9999999987766421    222 13567888888899999 9999999999999987762321223444444444422


Q ss_pred             ------------CCccHHHHHHHHHHHHHhhhchH----HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHH
Q 007863          526 ------------RVPNIKFNVAKVLQSLIPIVDQS----VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       526 ------------~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~  583 (587)
                                  .+-..|.+++-+|+.++..++..    .+...++..|-...+|+.+ |+..+.++++.+-++
T Consensus       895 ~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT  967 (997)
T 1vsy_5          895 NKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV  967 (997)
T ss_dssp             TSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred             cccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence                        11257788899999998876543    4556666677667788766 999999999987653

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.26  E-value=0.00028  Score=66.47  Aligned_cols=256  Identities=10%  Similarity=0.079  Sum_probs=147.4

Q ss_pred             chhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChH
Q 007863          215 QDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA  294 (587)
Q Consensus       215 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  294 (587)
                      .+..++.|...+.++.+.++.  ..+..+..+..+|.|.+..||..|++.|..+|..    .....+..++.++++..++
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence            477788888888888888775  4566788888889999999999998888888754    2355688888888888887


Q ss_pred             HHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc----hHHHHHhHHHHHHHhcCCC
Q 007863          295 EVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG----KDATIEQLLPIFLSLLKDE  370 (587)
Q Consensus       295 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~  370 (587)
                      ..+..+-++|..+.+. .+......++..+..    .++.+|..++..|..-...++    ..+....+...+.+.+.|-
T Consensus       115 ~E~~~V~~sL~sllk~-Dpk~tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV  189 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKM-DAKGTLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV  189 (507)
T ss_dssp             HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhc-ChHHHHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence            7777777888777764 232222333333333    357888888887765443332    2334456677777888776


Q ss_pred             ChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc-----C-CCcHHHHHHHHHHHHH----HHhhChhhHHHHHHHH
Q 007863          371 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-----D-RHWRVRLAIIEYIPLL----ASQLGVGFFDDKLGAL  440 (587)
Q Consensus       371 ~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~-----~-~~~~vr~~~~~~l~~l----~~~~~~~~~~~~l~~~  440 (587)
                      ..+==......|... +..+.-.-.+.+++.+.+...     + .+...-...+.++...    ++......|..++...
T Consensus       190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k  268 (507)
T 3u0r_A          190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ  268 (507)
T ss_dssp             CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence            432212222222211 111111112456666655432     1 2333222233333222    2222222333444443


Q ss_pred             HHHHcCCCch-----HHHHHHHHHHHHHHHHhChhhhhhchHHHHHh
Q 007863          441 CMQWLKDKVY-----SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE  482 (587)
Q Consensus       441 l~~~l~d~~~-----~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  482 (587)
                      ++..+.+-..     +.+...+++++.++...|........++.+.+
T Consensus       269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~  315 (507)
T 3u0r_A          269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFD  315 (507)
T ss_dssp             TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHH
T ss_pred             hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHH
Confidence            4334433222     36778899999999888832223344444444

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.21  E-value=0.0014  Score=61.88  Aligned_cols=258  Identities=16%  Similarity=0.144  Sum_probs=148.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCch
Q 007863          176 MPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW  255 (587)
Q Consensus       176 ~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~  255 (587)
                      ++..++-|++.+..+.+.++  ...+..+..+..++.|++..||..|+..|..++..    ...+.+...|.++++..++
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP--~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFP--ELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCG--GGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHhhCh--hhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence            47888888888888887764  45666777777788888888888888888877765    3577788888888887777


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhHHHHHhHhcCCC
Q 007863          256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDS  331 (587)
Q Consensus       256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~  331 (587)
                      ..+..+-++|-.+...-+    ...+-..+.++.. .+..+|..++.-|..-...++.+    .....+...+++.++|-
T Consensus       115 ~E~~~V~~sL~sllk~Dp----k~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV  189 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKMDA----KGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV  189 (507)
T ss_dssp             HHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhcCh----HHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence            777777777776665311    1123333333333 35688888777776655554443    22344566667777665


Q ss_pred             cHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc------CCCChHHHHHHHHHhHHhhhhh----chhhHhh----h
Q 007863          332 SQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL------KDEFPDVRLNIISKLDQVNQVI----GIDLLSQ----S  397 (587)
Q Consensus       332 ~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l------~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~----~  397 (587)
                      +..-=..+...+..+ +.++.....+.+++++....      .-.+++.-...+.++..-...+    ....+..    .
T Consensus       190 T~~EF~L~m~lL~~l-kl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k  268 (507)
T 3u0r_A          190 TGEEFVLFMKILSGL-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ  268 (507)
T ss_dssp             CHHHHHHHHHHHHTS-GGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhc-ccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence            533222333333222 12222223345666665542      2234554444444444444333    3333323    3


Q ss_pred             hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHc
Q 007863          398 LLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL  445 (587)
Q Consensus       398 ~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l  445 (587)
                      ++|.+..+-.. +....+...++.+..++...+........++.+...+
T Consensus       269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L  317 (507)
T 3u0r_A          269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKL  317 (507)
T ss_dssp             TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHH
T ss_pred             hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence            34433222221 2224677889999999988883333344455544443

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.07  E-value=4.8e-05  Score=66.27  Aligned_cols=145  Identities=14%  Similarity=0.061  Sum_probs=101.1

Q ss_pred             HHHHHHHcCCCch--HHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---H
Q 007863          438 GALCMQWLKDKVY--SIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---E  509 (587)
Q Consensus       438 ~~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~  509 (587)
                      +|.+.+++.++++  .++..|+.++..++......   ......+|.+.+++.+++..++..|+++|.+++.....   .
T Consensus        10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~   89 (233)
T 3tt9_A           10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE   89 (233)
T ss_dssp             HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4566777777776  78888888888777543211   13355789999999888889999999999998753211   1


Q ss_pred             HHHHhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhhch-HHHHHhHHHHHHHhcC-------C---------CCccHHH
Q 007863          510 ITCSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-SVVEKSIRPCLVELSE-------D---------PDVDVRF  571 (587)
Q Consensus       510 ~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~i~~~l~~l~~-------d---------~~~~Vr~  571 (587)
                      ......+|.++.++. .++..++..++.+|..+...-.. ..+.+..+|.|..++.       |         .+.+|+.
T Consensus        90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~  169 (233)
T 3tt9_A           90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY  169 (233)
T ss_dssp             HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHH
T ss_pred             HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHHH
Confidence            224567888888887 46888999999888888654222 2334455777766432       1         2568999


Q ss_pred             HHHHHHHHHHH
Q 007863          572 FATQALQSKDQ  582 (587)
Q Consensus       572 ~a~~al~~l~~  582 (587)
                      +|..+|..++.
T Consensus       170 na~~~L~nLss  180 (233)
T 3tt9_A          170 NVTGCLRNMSS  180 (233)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            99999988864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.03  E-value=0.00031  Score=61.18  Aligned_cols=185  Identities=16%  Similarity=0.080  Sum_probs=116.6

Q ss_pred             hHHHHHHHhcCCCc--HHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh--
Q 007863          398 LLPAIVELAEDRHW--RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD--  470 (587)
Q Consensus       398 ~~~~l~~~~~~~~~--~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~--  470 (587)
                      -+|.+.+++.++++  .++..+...+..++..-.   ........+|.+..++.+++.++++.|+.+|..++......  
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            35555555555555  555555555555543211   01112234688888888888999999999999887521111  


Q ss_pred             -hhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccC-hHHHHHhHHHHHHhhcC----------------CCCccHH
Q 007863          471 -WAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMG-SEITCSQLLPVVINASK----------------DRVPNIK  531 (587)
Q Consensus       471 -~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~----------------d~~~~vR  531 (587)
                       ......+|.+.+++. .++..++..++.++.+++..-. ...+....+|.+..++.                ..++.++
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~  168 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIF  168 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHHH
Confidence             123567888888886 4678899998888888875322 23344456677766542                1256899


Q ss_pred             HHHHHHHHHHHhhh--chHHHH--HhHHHHHHHhc------CCCCccHHHHHHHHHHHHHH
Q 007863          532 FNVAKVLQSLIPIV--DQSVVE--KSIRPCLVELS------EDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       532 ~~a~~~l~~l~~~~--~~~~~~--~~i~~~l~~l~------~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .++..+|..+...-  ....+.  ..+++.|..++      .+.+...+.+++-+|..+..
T Consensus       169 ~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          169 YNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            99999999997531  112222  24566666653      34566788999999887753

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.79  E-value=0.049  Score=56.48  Aligned_cols=85  Identities=13%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             hhhccccccccCCchHHHHHHHHHhcccccCcCCcc------hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh
Q 007863           47 KELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLE------YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ  120 (587)
Q Consensus        47 ~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~------~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~  120 (587)
                      ..++|++..+.+.+.+.|..++.++.+++.   +..      +...+.+++..++.|++..||.+|..+|++++..-+++
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d  110 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD  110 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence            468898888777888999999999998875   222      12334456788889999999999999999998776654


Q ss_pred             h----HhhhhHHHHHHhh
Q 007863          121 D----VVEHFIPLVKRLA  134 (587)
Q Consensus       121 ~----~~~~ll~~~~~l~  134 (587)
                      .    +...++|.+..+.
T Consensus       111 ~~~~l~~~~il~~L~~~l  128 (684)
T 4gmo_A          111 FCVHLYRLDVLTAIEHAA  128 (684)
T ss_dssp             HHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHcChHHHHHHHH
Confidence            3    2334555554443

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.75  E-value=0.021  Score=59.22  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=48.5

Q ss_pred             hhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH---HH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh
Q 007863          123 VEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA---LK-TELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA  196 (587)
Q Consensus       123 ~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~---~~-~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~  196 (587)
                      ...++|++..+ .+.+...|..|+..++.+.......   .. +.+.+++..++.|++..||..++.+|+.++...+.
T Consensus        33 ~~~i~Pll~~L-~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           33 EDKILPVLKDL-KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHTTHHHHHHH-SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             hhhHHHHHHHc-CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            45678877664 4566777888888887777532211   11 23445666778888888888888888888766543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.38  E-value=0.074  Score=49.69  Aligned_cols=113  Identities=13%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---
Q 007863          159 ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---  235 (587)
Q Consensus       159 ~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---  235 (587)
                      ...+.+++-+..+..|++..||+.+++.|...+..  ...+....++.+..+++|+++.|.+.++.+...+....-.   
T Consensus        59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~  136 (386)
T 3o2t_A           59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV  136 (386)
T ss_dssp             GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34456777777888888888888888888877653  3456677888888888888888888888777766532110   


Q ss_pred             ---------hhhhh---chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC
Q 007863          236 ---------QDCVA---HILPVIVNFSQDKSWRVRYMVANQLYELCEAVG  273 (587)
Q Consensus       236 ---------~~~~~---~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~  273 (587)
                               +..|+   .+...+.....+.+..||..+++.+..++....
T Consensus       137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS  186 (386)
T 3o2t_A          137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLS  186 (386)
T ss_dssp             HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTS
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhC
Confidence                     12222   234445556677889999999999998876543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=97.18  E-value=0.11  Score=45.76  Aligned_cols=108  Identities=15%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh-------c
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-------G  390 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-------~  390 (587)
                      +.+++.+..+..|++..+|...+..+.+.+..  +......+++.+..+++|+++.|.+.++.+...+.+..       +
T Consensus        52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~  129 (257)
T 3gs3_A           52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM  129 (257)
T ss_dssp             HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44555555555555555555555555554421  22233445555555555555555555555555444321       0


Q ss_pred             h-----hhH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          391 I-----DLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       391 ~-----~~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                      .     +..   ...+-..+.....+.+..+|..+++++..+.-.
T Consensus       130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~  174 (257)
T 3gs3_A          130 EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL  174 (257)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence            0     111   122334455566778899999999999887743

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.12  E-value=0.13  Score=48.07  Aligned_cols=183  Identities=11%  Similarity=0.096  Sum_probs=101.7

Q ss_pred             HHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHH
Q 007863          374 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIR  453 (587)
Q Consensus       374 vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  453 (587)
                      .+...+..+.+++-.-.+ .+.+.++|.+..+..|++..+|..+++++...+..  ...+...+++.+..++.|+++.|.
T Consensus        41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~  117 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVV  117 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence            444455555554322222 23356666666666677777777777766666542  122235566666666677777777


Q ss_pred             HHHHHHHHHHHHHh--------C------hhh-hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC-----------
Q 007863          454 DAAANNVKRLAEEF--------G------PDW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG-----------  507 (587)
Q Consensus       454 ~~a~~~l~~l~~~~--------~------~~~-~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-----------  507 (587)
                      +.++.+.+.++...        +      ..| ....+-..+..+..+.+..+|..+++++..+.....           
T Consensus       118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~  197 (386)
T 3o2t_A          118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRR  197 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccc
Confidence            77776666655321        1      001 122333344445566678888888888877653110           


Q ss_pred             -h-H-------------------HHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHh
Q 007863          508 -S-E-------------------ITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVEL  561 (587)
Q Consensus       508 -~-~-------------------~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l  561 (587)
                       . +                   .-...++..+++.+.++  ++..=..++.+|..+++.=  +.+...++++|..+
T Consensus       198 ~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R--P~~~~rIl~aL~~l  272 (386)
T 3o2t_A          198 QEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR--PMFMSEVIQAYETL  272 (386)
T ss_dssp             GTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHH
T ss_pred             cCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHhh
Confidence             0 0                   11345677777777753  2333355677777776542  34456777777765

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.09  E-value=0.028  Score=61.32  Aligned_cols=169  Identities=8%  Similarity=0.025  Sum_probs=106.1

Q ss_pred             chHHHHHHhcCC----CchHHHHHHHHHHHHHHHHhCCC--Cccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHh
Q 007863          241 HILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGPE--PTRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRI  310 (587)
Q Consensus       241 ~l~~~l~~~~~d----~~~~vR~~a~~~l~~l~~~~~~~--~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~  310 (587)
                      ..+..+..++.+    .++.+|..+.-+++.++......  ....    .+...+.+.+...+.+-+..++++|++++. 
T Consensus       391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  469 (1056)
T 1lsh_A          391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  469 (1056)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence            344555555554    46789999999999888654321  1122    244444445556667778889999998865 


Q ss_pred             hCHHHHHHhHHHHHhHhcC-------CCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhc--CCCChHHHHHHHHH
Q 007863          311 LNPELAIQHILPCVKELSS-------DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLL--KDEFPDVRLNIISK  381 (587)
Q Consensus       311 ~~~~~~~~~~~~~l~~~~~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l--~d~~~~vr~~a~~~  381 (587)
                             +..++.+.+++.       +...++|.+|+.+|..+....+     ..+.+.+.+++  ...++++|.+|+..
T Consensus       470 -------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-----~~v~~il~~i~~n~~e~~EvRiaA~~~  537 (1056)
T 1lsh_A          470 -------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-----RKVQEIVLPIFLNVAIKSELRIRSCIV  537 (1056)
T ss_dssp             -------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-----HHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             -------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-----HHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence                   234455555542       2356899999999988874321     23445566666  45678999999988


Q ss_pred             hHHhhhhhchhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHhhC
Q 007863          382 LDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLG  429 (587)
Q Consensus       382 l~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~~~  429 (587)
                      |-.-.+.       ..++..+...+ .+++..|+..+...+..+++.-.
T Consensus       538 Lm~t~P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~  579 (1056)
T 1lsh_A          538 FFESKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN  579 (1056)
T ss_dssp             HHHTCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHCcC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence            8654332       13444444433 45778887777777766665443

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.07  E-value=0.015  Score=63.42  Aligned_cols=163  Identities=12%  Similarity=0.038  Sum_probs=101.8

Q ss_pred             hhhHHHHHHHhcC----CCcHHHHHHHHHHHHHHHhhC------hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Q 007863          396 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE  465 (587)
Q Consensus       396 ~~~~~~l~~~~~~----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~  465 (587)
                      ..++..+..++.+    .++.+|..++-.++.++....      +....+.+...+...+...+.+-+..++++||++..
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            3455666666654    467788888888888776431      112245566667777777778888889999988753


Q ss_pred             HhChhhhhhchHHHHHhhhcC-------CccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHH
Q 007863          466 EFGPDWAMQHIVPQVLEMINN-------PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVL  538 (587)
Q Consensus       466 ~~~~~~~~~~~~~~l~~~l~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  538 (587)
                              ...++.+..++..       ...++|.+|+.++..+.... ++...+.+++.+.+  .+..+++|..|+..|
T Consensus       470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~~v~~il~~i~~n--~~e~~EvRiaA~~~L  538 (1056)
T 1lsh_A          470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVF  538 (1056)
T ss_dssp             --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHH
T ss_pred             --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hHHHHHHHHHHhcC--CCCChHHHHHHHHHH
Confidence                    3356666666532       23468899999999887532 22233344444433  446899999999888


Q ss_pred             HHHHhhh-------------chHHHHHhHHHHHHHhcCCCCccH
Q 007863          539 QSLIPIV-------------DQSVVEKSIRPCLVELSEDPDVDV  569 (587)
Q Consensus       539 ~~l~~~~-------------~~~~~~~~i~~~l~~l~~d~~~~V  569 (587)
                      -...+..             .+..+.+.+...|..+.+..+|.-
T Consensus       539 m~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~  582 (1056)
T 1lsh_A          539 FESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  582 (1056)
T ss_dssp             HHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcch
Confidence            6543321             112444555666666665555543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=96.95  E-value=0.18  Score=44.31  Aligned_cols=106  Identities=15%  Similarity=0.233  Sum_probs=57.9

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh-------C
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF-------G  468 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-------~  468 (587)
                      +.+++.+..+..|++.++|+..++.+...+..  ...+....++.+..+++|+++.|.+.++.+.+.+++..       +
T Consensus        52 ~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~  129 (257)
T 3gs3_A           52 EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLM  129 (257)
T ss_dssp             HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            44555555555555566666666655555432  22234455555555666666666666666655554421       1


Q ss_pred             h-------hh-hhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863          469 P-------DW-AMQHIVPQVLEMINNPHYLYRMTILQAISLLA  503 (587)
Q Consensus       469 ~-------~~-~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~  503 (587)
                      .       .| ....+-..+..+..+.+..+|..+++++..+.
T Consensus       130 ~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          130 EPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            0       01 11223334444556677888888888888766

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=95.63  E-value=0.68  Score=38.44  Aligned_cols=141  Identities=13%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcC------CCcHHHHHHHHHHHHHHHh--hChhhHHHHHHHHHHHH
Q 007863          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW  444 (587)
Q Consensus       373 ~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~------~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~  444 (587)
                      ..|..|+..|..-.   |-    +.++|.+..++.+      .++..=...++.+..+...  +.-+.+...++|.++.+
T Consensus        23 ~~r~~aL~sL~~D~---gL----~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEKES---GL----QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHHCS---SC----TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC---Ch----hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            34666666555432   22    3455555544322      2444434444444444432  23455667788888887


Q ss_pred             cCC---CchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccChHHHHHhHHH
Q 007863          445 LKD---KVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSEITCSQLLP  517 (587)
Q Consensus       445 l~d---~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~  517 (587)
                      +-.   ....+|+.|++.++.+++.+|...  ....+...+.+.+.|+  .......|+..+..++.    +.+..-++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~----~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK----NVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH----HHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH----HHHHHhhhc
Confidence            521   112899999999999999998753  4566777777777776  46778888888877654    444455667


Q ss_pred             HHHhhcC
Q 007863          518 VVINASK  524 (587)
Q Consensus       518 ~l~~~l~  524 (587)
                      .+-...+
T Consensus       172 ~l~~~~~  178 (196)
T 4atg_A          172 HAEEYKR  178 (196)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            7655543

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=94.57  E-value=1.7  Score=36.10  Aligned_cols=141  Identities=13%  Similarity=0.181  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC------ChHHHHHHHHHhHHHHHHh--hCHHHHHHhHHHHHhHh
Q 007863          256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD------NEAEVRIAAAGKVTKICRI--LNPELAIQHILPCVKEL  327 (587)
Q Consensus       256 ~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d------~~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~~l~~~  327 (587)
                      ..|..|.+.|..       +..-..++|.|...+.+      .+...-...++....+...  +.-+.+...++|.+..+
T Consensus        23 ~~r~~aL~sL~~-------D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEK-------ESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHH-------CSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-------CCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            347776665553       33356788888876543      2334444444555555442  22346667788887766


Q ss_pred             cCC---CcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCC--ChHHHHHHHHHhHHhhhhhchhhHhhhhHH
Q 007863          328 SSD---SSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLP  400 (587)
Q Consensus       328 ~~d---~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~  400 (587)
                      +-.   ....+|..|++.++.++..++.  ....+.+...+.+.+.|+  ......+|+.++..++    .+.....++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhc
Confidence            521   1228999999999999988874  445667777777777765  5678888888888765    3444455668


Q ss_pred             HHHHHhc
Q 007863          401 AIVELAE  407 (587)
Q Consensus       401 ~l~~~~~  407 (587)
                      .+....+
T Consensus       172 ~l~~~~~  178 (196)
T 4atg_A          172 HAEEYKR  178 (196)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            7765543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=93.83  E-value=1.2  Score=38.50  Aligned_cols=159  Identities=18%  Similarity=0.219  Sum_probs=90.4

Q ss_pred             ccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCCcchHhhhh
Q 007863            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLL   88 (587)
Q Consensus         9 ~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~   88 (587)
                      ..+..++..|.+++  .|..|+..|+.-.      ...+.+-|.++.+.    .+...+.+.+-.+.+.+..+.    + 
T Consensus         3 ~~i~qli~~L~~p~--~Re~AL~eLsk~R------e~~~~La~~LW~S~----Gtia~LLQEIisiYp~lspp~----L-   65 (268)
T 2fv2_A            3 EKIYQWINELSSPE--TRENALLELSKKR------ESVPDLAPMLWHSF----GTIAALLQEIVNIYPSINPPT----L-   65 (268)
T ss_dssp             HHHHHHHHHTSSTT--THHHHHHHHHHHT------TTCTTHHHHHHHST----THHHHHHHHHHHTGGGBTTBC----C-
T ss_pred             HHHHHHHHHhcCch--hHHHHHHHHHHhh------hccccHHHHHHhcc----CHHHHHHHHHHHHcccCCCcc----c-
Confidence            34667777777555  5999987776531      23467778887643    333333333333333332111    0 


Q ss_pred             hHHHhhhcCchhHHHH-HHHHHHHHHHhhcC------hhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhccCCCHHH
Q 007863           89 PPLETLCTVEETCVRD-KAVESLCRIGSQMR------EQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYPSAPEAL  160 (587)
Q Consensus        89 ~~l~~l~~~~~~~vr~-~a~~~l~~l~~~~~------~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~~~~~~~  160 (587)
                              ......|- .|...++.++.+-.      ..++--++.||+....++. ....|..+.+.++.+.+.-++++
T Consensus        66 --------t~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eV  137 (268)
T 2fv2_A           66 --------TAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEV  137 (268)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHH
T ss_pred             --------CHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHH
Confidence                    11122222 22223333443211      1123446778875433333 34578888999998887766653


Q ss_pred             H-----HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 007863          161 K-----TELRTIYRQLCQDDMPMVRRSAATNLGKFAA  192 (587)
Q Consensus       161 ~-----~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~  192 (587)
                      .     .+++|++...++.++...|..|...+.++..
T Consensus       138 i~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~  174 (268)
T 2fv2_A          138 INFLLTTEIIPLCLRIMESGSELSKTVATFILQKILL  174 (268)
T ss_dssp             HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhc
Confidence            3     4678889988888888888877777777653

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=92.76  E-value=7.1  Score=37.31  Aligned_cols=249  Identities=11%  Similarity=0.103  Sum_probs=127.2

Q ss_pred             CCchHHHHHHHHHHHHHHHH--hCC----CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh-CHHHH-HHhHHHH
Q 007863          252 DKSWRVRYMVANQLYELCEA--VGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL-NPELA-IQHILPC  323 (587)
Q Consensus       252 d~~~~vR~~a~~~l~~l~~~--~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~-~~~~~-~~~~~~~  323 (587)
                      +.+|.--..+.+.|..+...  +..    ......++--+..+++.+|++-|...-..|-.+-..+ +-..+ ...+-..
T Consensus       128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni  207 (449)
T 2npp_B          128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI  207 (449)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56787777777777776643  211    1223346777888889999999988888887765533 22211 1222222


Q ss_pred             HhHhcCCCc-HHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChH-HHHHHHHHhHHhhhhhchhhHhhhh
Q 007863          324 VKELSSDSS-QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       324 l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~i~~~~~~~~~~~~~  398 (587)
                      +.+...+.. ..=-..+++.++.+...+.   +++....+...+..+.+...-. --.....++..+++.=  ..+...+
T Consensus       208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD--p~L~~~v  285 (449)
T 2npp_B          208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEPV  285 (449)
T ss_dssp             HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC--GGGHHHH
T ss_pred             HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC--cHhHHHH
Confidence            333322111 1111245566666665553   3344444445555565554322 1223334444433220  1112233


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHcCCCchHHHHHHHHHHH--HHHHHhChhhhh
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVK--RLAEEFGPDWAM  473 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~~~~~  473 (587)
                      +..+.+..--.+..-....+..+..+....++..+..-.   ...+-.++.++...|-+.|+..+.  .+...+..  ..
T Consensus       286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~~--n~  363 (449)
T 2npp_B          286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD--NA  363 (449)
T ss_dssp             HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT--TH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHh--ch
Confidence            333333333344444556677777777777777665443   334446678888888888876653  11221111  12


Q ss_pred             hchHHHHHhhh----c-CCccHHHHHHHHHHHHhhc
Q 007863          474 QHIVPQVLEMI----N-NPHYLYRMTILQAISLLAP  504 (587)
Q Consensus       474 ~~~~~~l~~~l----~-~~~~~~r~~a~~~l~~l~~  504 (587)
                      ..++|.+...+    . +=+..+|..+..++..+.+
T Consensus       364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            33455544432    1 1134577777766665543

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=92.70  E-value=1.8  Score=37.18  Aligned_cols=130  Identities=8%  Similarity=-0.030  Sum_probs=80.7

Q ss_pred             HHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 007863          128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEAAHLKSEIMSI  206 (587)
Q Consensus       128 ~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~  206 (587)
                      .++.++-.+++...|..+..+++.......++    -++.+...+. .+++.+-...+.+++.+....     ...+.+.
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~----~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~  128 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLE----EVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTI  128 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHH----HHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHH----HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHH
Confidence            45555566666666777776666544333332    2333344432 456777776666566665432     1234556


Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHH
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE  270 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~  270 (587)
                      +...+.|++.-+|+.|+.++-.   . ......+.+++.+.....|++..||++....|..++.
T Consensus       129 i~~W~~s~~~w~rR~ai~~~l~---~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k  188 (220)
T 2b6c_A          129 FALFYGAENFWNRRVALNLQLM---L-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSK  188 (220)
T ss_dssp             HHHHTTCSSHHHHHHHHHTTTT---C-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHH---H-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            6678888888888887775522   1 1122345567777778888899999998888887764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=92.67  E-value=5.7  Score=36.01  Aligned_cols=184  Identities=8%  Similarity=0.040  Sum_probs=115.3

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-Chh-----hH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-----FF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  467 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~~-----~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                      ..++..+...+..=+++.|+.+...+..+.+.- |..     .+  .+.++..+.....+++...-  +...|..+++.-
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~e  154 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRHE  154 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTSH
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHhH
Confidence            456666666677777888888887777665432 111     11  14566667777665554322  212222222110


Q ss_pred             --ChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HH---HHHhHHHHHHhhcCCCCccHHHHHHHHHH
Q 007863          468 --GPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EI---TCSQLLPVVINASKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       468 --~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  539 (587)
                        ..-......+-.+++....++..+-.-|...+..+......   +.   ..+.+...+..++.++++..|..+++.|+
T Consensus       155 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLg  234 (341)
T 1upk_A          155 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  234 (341)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence              00001123344566788888998888888888777643221   11   24567777888999999999999999999


Q ss_pred             HHHhhhchH-HH-----HHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          540 SLIPIVDQS-VV-----EKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       540 ~l~~~~~~~-~~-----~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      .+.-.-.+. ..     ...-+..+..++.|+..+|+.-|-..++.+.
T Consensus       235 elLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV  282 (341)
T 1upk_A          235 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  282 (341)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence            997653322 11     1245778888999999999999988877653

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=92.60  E-value=6.8  Score=36.73  Aligned_cols=252  Identities=10%  Similarity=0.077  Sum_probs=129.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhC------CCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-HHHH-HhHHH
Q 007863          251 QDKSWRVRYMVANQLYELCEAVG------PEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-ELAI-QHILP  322 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-~~~~-~~~~~  322 (587)
                      .+++|.--..+.+.|..+...-.      +......++--+..+++.+|++-|...-..|-.+-..+.. ..+. ..+-.
T Consensus        94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn  173 (403)
T 3fga_B           94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN  173 (403)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            36678777777777776655311      1222334666677889999999998888877776443322 1111 22222


Q ss_pred             HHhHhcCCCc-HHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChH-HHHHHHHHhHHhhhhhchhhHhhh
Q 007863          323 CVKELSSDSS-QHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQS  397 (587)
Q Consensus       323 ~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~i~~~~~~~~~~~~  397 (587)
                      .+.+...+.. ..=-...++.++.+...+.   +++....+...+..+.+...-. --.....++..+++.=  ..+...
T Consensus       174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD--p~L~~~  251 (403)
T 3fga_B          174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD--STLTEP  251 (403)
T ss_dssp             HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC--GGGHHH
T ss_pred             HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC--chhHHH
Confidence            2223221111 1111245666777766653   2333334455555565554322 1233344444443221  111223


Q ss_pred             hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHH---HHHHHHHcCCCchHHHHHHHHHHH--HHHHHhCh--h
Q 007863          398 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL---GALCMQWLKDKVYSIRDAAANNVK--RLAEEFGP--D  470 (587)
Q Consensus       398 ~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l---~~~l~~~l~d~~~~vr~~a~~~l~--~l~~~~~~--~  470 (587)
                      ++..+.+..--.+..-....+..+..+....+++.+..-.   ...+-.++.++...|-+.|+..+.  .+...+..  .
T Consensus       252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~  331 (403)
T 3fga_B          252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA  331 (403)
T ss_dssp             HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence            3333333333345555556777777778777777665444   344446678889999888876652  11221111  1


Q ss_pred             hhhhchHHHHHhhhcC-CccHHHHHHHHHHHHhhc
Q 007863          471 WAMQHIVPQVLEMINN-PHYLYRMTILQAISLLAP  504 (587)
Q Consensus       471 ~~~~~~~~~l~~~l~~-~~~~~r~~a~~~l~~l~~  504 (587)
                      .+...++|.+.+.... =+..+|..+..++..+.+
T Consensus       332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            1223333334332222 245677777776666543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=92.50  E-value=1.1  Score=35.18  Aligned_cols=75  Identities=9%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      ...+..+.+.+.+++..+...|+..+..+.+++|....    ...++..+.+++...++.||..++..+..+...+..+
T Consensus        41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            34555666667777777777788888888777776532    2345555555555567889999988888888776543

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=91.48  E-value=2.3  Score=36.90  Aligned_cols=159  Identities=10%  Similarity=-0.045  Sum_probs=90.5

Q ss_pred             HHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHHHHHHhhhhhHHHHHHH
Q 007863          128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA-TNLGKFAATVEAAHLKSEIMSI  206 (587)
Q Consensus       128 ~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~-~~l~~l~~~~~~~~~~~~i~~~  206 (587)
                      .++.++-.+++...|..|+.++.......+++....+-.++.   ..+++.+-...+ ..++.+....+.     ...+.
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~---~~~nWd~~D~~a~~~~g~~~~~~p~-----~~~~~  135 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINETHIPFLEELIV---TKSWWDSVDSIVPTFLGDIFLKHPE-----LISAY  135 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT---SSCCHHHHHHHTTTHHHHHHHHCGG-----GGGGT
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc---cCCChHHHHHhhHHHHHHHHHHCHH-----HHHHH
Confidence            455566666655667667766654444444443333332222   356677665553 556666554221     13345


Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHH
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYV  286 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~  286 (587)
                      +...+.|++.-+|+.|+.++-...    .......+.+.+.....|++..||.+...+|..++..     .++.+.+.+.
T Consensus       136 l~~W~~s~~~w~rR~ai~~~l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-----~p~~v~~fl~  206 (232)
T 3jxy_A          136 IPKWIASDNIWLQRAAILFQLKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-----NPDVVWEYVQ  206 (232)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-----CHHHHHHHHH
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-----CHHHHHHHHH
Confidence            566788888888888876652211    1222345667777888899999999999988877643     1334555555


Q ss_pred             HhcCCChHHHHHHHHHhHH
Q 007863          287 RLLRDNEAEVRIAAAGKVT  305 (587)
Q Consensus       287 ~~l~d~~~~vr~~a~~~l~  305 (587)
                      +.  .-+.-.+..|++.|.
T Consensus       207 ~~--~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          207 NN--ELAPLSKREAIKHIK  223 (232)
T ss_dssp             HS--CCCHHHHHHHTTTTH
T ss_pred             HC--CCCHHHHHHHHHhcc
Confidence            43  223344444554443

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=91.42  E-value=10  Score=36.24  Aligned_cols=250  Identities=10%  Similarity=0.049  Sum_probs=131.4

Q ss_pred             CCcHHHHHHHHHHHHhhhhh--hc----hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHH
Q 007863          330 DSSQHVRSALATVIMGMAPI--LG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPA  401 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~--~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~  401 (587)
                      |++|.--..+.+.+..+...  +.    +..+...++--+..++..+++.-|......|..+...+..-  .+...+-..
T Consensus       128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni  207 (449)
T 2npp_B          128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI  207 (449)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45565555555555554322  21    22222345555667777788888888777777776554211  122222233


Q ss_pred             HHHHhcC-CCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHHhChhhhhhch
Q 007863          402 IVELAED-RHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYS-IRDAAANNVKRLAEEFGPDWAMQHI  476 (587)
Q Consensus       402 l~~~~~~-~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~a~~~l~~l~~~~~~~~~~~~~  476 (587)
                      +.+.+.+ ....--..+++.++.+.+.+.   .+.....+...++.+.+..... --..-..++..+++.- +. ....+
T Consensus       208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-L~~~v  285 (449)
T 2npp_B          208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPV  285 (449)
T ss_dssp             HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-GG-GHHHH
T ss_pred             HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcC-cH-hHHHH
Confidence            3333322 222222356677777766553   1222233344444444333221 2223344444444321 11 23444


Q ss_pred             HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHH---HhHHHHHHhhcCCCCccHHHHHHHHHH--HHHhhhchHHHH
Q 007863          477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITC---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVDQSVVE  551 (587)
Q Consensus       477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~---~~~l~~l~~~l~d~~~~vR~~a~~~l~--~l~~~~~~~~~~  551 (587)
                      +..+++.=--.+.......+.-+..+.+.++++.+.   ..+...+..++++++..|-..|+..+.  .+...+.  ...
T Consensus       286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~  363 (449)
T 2npp_B          286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA  363 (449)
T ss_dssp             HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hch
Confidence            555544433345555667788888888888877654   446666778889988888888876653  1222211  112


Q ss_pred             HhHHHHHHHhc-----CCCCccHHHHHHHHHHHHHHH
Q 007863          552 KSIRPCLVELS-----EDPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       552 ~~i~~~l~~l~-----~d~~~~Vr~~a~~al~~l~~~  583 (587)
                      ..++|.+...+     +-=+..||..|..++..+.++
T Consensus       364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTT
T ss_pred             hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            34555554421     222457999999999877654

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=91.33  E-value=3.8  Score=35.48  Aligned_cols=130  Identities=12%  Similarity=0.063  Sum_probs=74.3

Q ss_pred             HHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhc-CCCchHHHHHH-HHHHHHHHHHhCCCCcccchHH
Q 007863          206 IFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRSDVVP  283 (587)
Q Consensus       206 ~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~-~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~l~~  283 (587)
                      ++..+..++..+.|..|+..+....+...++     .++.+...+ ...+|.+--.. ...++.+....     +..+.+
T Consensus        65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~~  134 (232)
T 3jxy_A           65 IIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELISA  134 (232)
T ss_dssp             HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGGG
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHHH
Confidence            4445556666677887777776544433322     222333332 34567765544 35566665541     222556


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863          284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  349 (587)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      .+.....|++.-+|..++..+-.....   .. ...+++.+...+.|++..||.+...+|..++..
T Consensus       135 ~l~~W~~s~~~w~rR~ai~~~l~~~~~---~d-~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          135 YIPKWIASDNIWLQRAAILFQLKYKQK---MD-EELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT  196 (232)
T ss_dssp             THHHHHHSSCHHHHHHHHHTTTTCGGG---CC-HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhcCCchHHHHHHHHHHHHHHhC---CC-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            667777777766666666554222111   11 134555666777888888888888888887754

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=91.23  E-value=6.4  Score=33.67  Aligned_cols=131  Identities=5%  Similarity=-0.028  Sum_probs=78.3

Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCCCCcccchHH
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRSDVVP  283 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~  283 (587)
                      .++..+..++..+.|..|+..+......+.+     ..++.+...+. -.+|.+--..+.+++.+...     .+..+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-----~~~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLTELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGGGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-----ChHHHHH
Confidence            4455566666677788887777765443322     23344444443 45677766666556666543     1233566


Q ss_pred             HHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863          284 AYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  349 (587)
Q Consensus       284 ~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      .+.....|++.-+|..|+.++-....    +...+.+++.+..++.|++..||.+...+|..++..
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~~~----~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            77777777777777766665422211    111244566666677788888888888887777654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=89.47  E-value=12  Score=33.94  Aligned_cols=206  Identities=12%  Similarity=0.129  Sum_probs=123.1

Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh-chh----hH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID----LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-~~~----~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  426 (587)
                      +.+.++..+...+..-+-+.|..+...+..+...- |..    .+   .+.++..+....++++...-  +-..+...  
T Consensus        75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRec--  150 (341)
T 1upk_A           75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLREC--  150 (341)
T ss_dssp             HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHH--
T ss_pred             HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHH--
Confidence            44566667777777767777777777666654321 110    00   13445555444444443221  11111111  


Q ss_pred             hhChhhHHHH-----HHHHHHHHcCCCchHHHHHHHHHHHHHHHHh---Chhhh---hhchHHHHHhhhcCCccHHHHHH
Q 007863          427 QLGVGFFDDK-----LGALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWA---MQHIVPQVLEMINNPHYLYRMTI  495 (587)
Q Consensus       427 ~~~~~~~~~~-----l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~~~~~l~~~l~~~~~~~r~~a  495 (587)
                       +..+.+...     ....+..+++.++.+|-.-|..++..+...-   -.+++   -+.++....+++.++|+.+|..+
T Consensus       151 -ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS  229 (341)
T 1upk_A          151 -IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  229 (341)
T ss_dssp             -HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             -HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence             111211111     2234567888899999999998888776431   11221   25567777778999999999999


Q ss_pred             HHHHHHhhcccCh-HH---H--HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--------HHHHhHHHHHHHh
Q 007863          496 LQAISLLAPVMGS-EI---T--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------VVEKSIRPCLVEL  561 (587)
Q Consensus       496 ~~~l~~l~~~~~~-~~---~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--------~~~~~i~~~l~~l  561 (587)
                      ++.++.+.-.-.. ..   |  ...-+-.+..++.|++.+++..|...+...+..-..+        .-.+.++.-|..+
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f  309 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  309 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence            9999999753211 11   1  2446778888999999999999999988776542211        1224456666677


Q ss_pred             cCCC
Q 007863          562 SEDP  565 (587)
Q Consensus       562 ~~d~  565 (587)
                      ..|+
T Consensus       310 ~~d~  313 (341)
T 1upk_A          310 QNDR  313 (341)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            7776

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=89.41  E-value=6.7  Score=30.94  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  520 (587)
                      +.+++|..-...+..+..    -. . -....+..+.+.++++|..+...|+..+..+.+++|..+.    ...++..+.
T Consensus        14 l~~~dw~~~leicD~I~~----~~-~-~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~   87 (148)
T 1mhq_A           14 MSEQDWSAIQNFCEQVNT----DP-N-GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (148)
T ss_dssp             CSSCCHHHHHHHHHHHHH----SS-H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc----CC-c-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            445677654444333322    11 1 1244566677778889999999999999999999987532    356777777


Q ss_pred             hhcCC------CCccHHHHHHHHHHHHHhhhchH
Q 007863          521 NASKD------RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      +++.+      .++.||..++..+..+...+...
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~  121 (148)
T 1mhq_A           88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED  121 (148)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            77764      36799999999999998887643

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.36  E-value=3.8  Score=32.99  Aligned_cols=75  Identities=8%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcCC-CCccHHHHHHHHHHHHHhhhchH
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      ...+..+.+.+++++..+...|+..+..+.+++|..+.    ...++..+.+++.. .++.||..++..+..+...++..
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  130 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD  130 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44566677777888888888899999999988887521    24455555555543 56799999999999988877654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=88.83  E-value=5.8  Score=31.33  Aligned_cols=72  Identities=7%  Similarity=0.010  Sum_probs=49.6

Q ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHhhhcC------CccHHHHHHHHHHHHhhcc
Q 007863          436 KLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEMINN------PHYLYRMTILQAISLLAPV  505 (587)
Q Consensus       436 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~l~~------~~~~~r~~a~~~l~~l~~~  505 (587)
                      ..+..+.+-+.+.++.+...|+..|..+++.+|..|.    ...++..+.+++.+      ++..||.-.+..+..-...
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            4455666777788888888888888888888887652    25566666666643      3456777777777666655


Q ss_pred             cC
Q 007863          506 MG  507 (587)
Q Consensus       506 ~~  507 (587)
                      ++
T Consensus       128 f~  129 (149)
T 3g2s_A          128 LP  129 (149)
T ss_dssp             CT
T ss_pred             hC
Confidence            44

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=87.51  E-value=6.4  Score=31.96  Aligned_cols=99  Identities=12%  Similarity=0.091  Sum_probs=67.1

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  520 (587)
                      +.+++|..-...+..+..    -..  -....+..+.+.++++|..+...|+..+..+.+++|....    ...++..+.
T Consensus        26 l~~~Dw~~ileicD~I~~----~~~--~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~   99 (171)
T 1juq_A           26 NRQEDWEYIIGFCDQINK----ELE--GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI   99 (171)
T ss_dssp             CSSCCHHHHHHHHHHHHH----STT--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc----CCc--cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            445677654444333322    111  1244566677778889999999999999999998886532    345566666


Q ss_pred             hhcCC------CCccHHHHHHHHHHHHHhhhchHH
Q 007863          521 NASKD------RVPNIKFNVAKVLQSLIPIVDQSV  549 (587)
Q Consensus       521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~~~  549 (587)
                      +++..      .++.||..++..+..+...++...
T Consensus       100 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~  134 (171)
T 1juq_A          100 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEA  134 (171)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            66542      367999999999999988876543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=87.16  E-value=9.6  Score=30.05  Aligned_cols=96  Identities=6%  Similarity=0.044  Sum_probs=65.0

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHh
Q 007863          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  482 (587)
Q Consensus       407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~  482 (587)
                      .+++|..-..++..+..-.  .|    ....+..+.+-+++.++.+...|+..|..+++.+|..+.    ...++..+..
T Consensus        15 ~~~dw~~~leicD~I~~~~--~~----~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~k   88 (148)
T 1mhq_A           15 SEQDWSAIQNFCEQVNTDP--NG----PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIK   88 (148)
T ss_dssp             SSCCHHHHHHHHHHHHHSS--HH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHH
Confidence            3567776554444432210  11    234566677778889999999999999999999888752    3667777777


Q ss_pred             hhcC------CccHHHHHHHHHHHHhhcccCh
Q 007863          483 MINN------PHYLYRMTILQAISLLAPVMGS  508 (587)
Q Consensus       483 ~l~~------~~~~~r~~a~~~l~~l~~~~~~  508 (587)
                      ++.+      .+..||...+..+..-+..++.
T Consensus        89 l~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (148)
T 1mhq_A           89 VLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (148)
T ss_dssp             TTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            7653      3567888888888777765543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.79  E-value=9.6  Score=29.70  Aligned_cols=76  Identities=11%  Similarity=-0.032  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863          160 LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHL----KSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       160 ~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~----~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      ..++....+.+-+.+.++.+...++..|..++++.|..-.    ...++..+..+++..++.||.-....+...+..+..
T Consensus        39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~  118 (140)
T 3ldz_A           39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN  118 (140)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence            3455666677777888999999999999999988875211    133444444444445667777777777766665543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=86.69  E-value=10  Score=30.81  Aligned_cols=96  Identities=7%  Similarity=0.077  Sum_probs=63.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHhh
Q 007863          408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLEM  483 (587)
Q Consensus       408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~~  483 (587)
                      +++|..-..++..+..-.  .+    ....+..+.+-+++.++.+...|+..|..+++.+|..+.    ...++..+..+
T Consensus        28 ~~Dw~~ileicD~I~~~~--~~----~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl  101 (171)
T 1juq_A           28 QEDWEYIIGFCDQINKEL--EG----PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKV  101 (171)
T ss_dssp             SCCHHHHHHHHHHHHHST--TH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHcCC--cc----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHH
Confidence            467776544444432210  11    234556677778888899999999999999888887652    25567777776


Q ss_pred             hcC------CccHHHHHHHHHHHHhhcccChH
Q 007863          484 INN------PHYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       484 l~~------~~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      +..      .+..||..++..+..-...++..
T Consensus       102 ~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~  133 (171)
T 1juq_A          102 VSPKYLGDRVSEKVKTKVIELLYSWTMALPEE  133 (171)
T ss_dssp             HCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             hccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            642      24678888888888877765543

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=85.83  E-value=3.2  Score=31.75  Aligned_cols=28  Identities=18%  Similarity=0.331  Sum_probs=14.2

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHH
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISL  501 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~  501 (587)
                      ..++|.+...++|.||.+....+..+..
T Consensus        30 ~p~lp~LL~WLQD~NWPvA~~i~~~L~~   57 (134)
T 3ut4_A           30 EPIIFDLLKWLQDYNWPIAKDILPVVVL   57 (134)
T ss_dssp             HHHHHHHHGGGSCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            3355555555555555555444444443

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=85.22  E-value=25  Score=33.00  Aligned_cols=223  Identities=11%  Similarity=0.068  Sum_probs=117.9

Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhCh---hh
Q 007863          359 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV---GF  432 (587)
Q Consensus       359 l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~---~~  432 (587)
                      ++--+..++..+++.=|...-..|..+...+...  .+...+-..+.+.+.+ ....--...++.++.+.+.+..   +.
T Consensus       130 Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkee  209 (403)
T 3fga_B          130 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE  209 (403)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHH
Confidence            3444566777777777777777777766543221  1112222233333322 2122223567777777776532   11


Q ss_pred             HHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH
Q 007863          433 FDDKLGALCMQWLKDKVY-SIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT  511 (587)
Q Consensus       433 ~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~  511 (587)
                      ....+...++.+-+.+.. .--.+-..++..+++.- +. ....++..+.+.---.+.......+.-+..+.+.++++.+
T Consensus       210 hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p~-L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f  287 (403)
T 3fga_B          210 HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEF  287 (403)
T ss_dssp             HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-GG-GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhC-ch-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHH
Confidence            222333444444333322 12233444444444321 11 2344444554443334556667777888888888887765


Q ss_pred             H---HhHHHHHHhhcCCCCccHHHHHHHHHH--HHHhhhc--hHHHHHhHHHHHHHhcC-CCCccHHHHHHHHHHHHHHH
Q 007863          512 C---SQLLPVVINASKDRVPNIKFNVAKVLQ--SLIPIVD--QSVVEKSIRPCLVELSE-DPDVDVRFFATQALQSKDQV  583 (587)
Q Consensus       512 ~---~~~l~~l~~~l~d~~~~vR~~a~~~l~--~l~~~~~--~~~~~~~i~~~l~~l~~-d~~~~Vr~~a~~al~~l~~~  583 (587)
                      .   ..+...+..++.+++..|-..|+..+.  .+..-+.  ...+...+.|.|.+... -=++.||..|..++..+.++
T Consensus       288 ~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          288 VKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEM  367 (403)
T ss_dssp             HHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence            3   445566777888888888888776552  1121111  12333445555555322 23567999999999887654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=85.21  E-value=13  Score=29.83  Aligned_cols=75  Identities=11%  Similarity=0.039  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .++.+..+.+-+.+.++.++..++..|..++++++..-    ....++..+..++.. .++.||.-+...+...+..+..
T Consensus        50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A           50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            34555666667788899999999999999999877511    113344444444543 3567777777777766665543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=84.34  E-value=5.8  Score=34.06  Aligned_cols=75  Identities=11%  Similarity=0.131  Sum_probs=44.5

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcC-CCCccHHHHHHHHHHHHHhhhchH
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      ...+..+.+.+++++..+...|+..+..+.++.|....    ...++..+.++++ ..++.||..++..+..+...+..+
T Consensus        44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            33455555566666777777777777777766665321    2233333333332 245678888888888887766543

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=84.23  E-value=9.1  Score=30.56  Aligned_cols=97  Identities=10%  Similarity=0.141  Sum_probs=63.5

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChHHH----HHhHHHH-
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPV-  518 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~-  518 (587)
                      +.+++|..-...+..+..    - .. -....+..+.+.++ +++..+...|+..+..+.+++|....    ...++.. 
T Consensus        29 l~~~Dw~~~leicD~I~~----~-~~-~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~  102 (157)
T 1elk_A           29 LQSEDWALNMEICDIINE----T-EE-GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV  102 (157)
T ss_dssp             CSSCCHHHHHHHHHHHHH----S-SS-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhC----C-Cc-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence            445677655544443322    1 11 12445666777776 57888999999999999999987632    2345555 


Q ss_pred             HHhhcC---CCCccHHHHHHHHHHHHHhhhch
Q 007863          519 VINASK---DRVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       519 l~~~l~---d~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                      +.+.+.   ++...||..++..+..+...+..
T Consensus       103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~  134 (157)
T 1elk_A          103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFRS  134 (157)
T ss_dssp             THHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence            455553   34568999999999999877653

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=82.51  E-value=16  Score=28.75  Aligned_cols=75  Identities=11%  Similarity=-0.058  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhccc------CchhHHHHHHHHHHHHh
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD------DQDSVRLLAVEGCGALG  230 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d------~~~~vr~~a~~~l~~l~  230 (587)
                      .+.....+.+-+.+.++.+...++..|..+++++|..    .....++..+.+++.+      .++.||.-..+.+...+
T Consensus        46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence            4556666777778999999999999999999988752    1223456666666654      35788988888888887


Q ss_pred             cccCh
Q 007863          231 KLLEP  235 (587)
Q Consensus       231 ~~~~~  235 (587)
                      ..++.
T Consensus       126 ~~f~~  130 (149)
T 3g2s_A          126 VGLPE  130 (149)
T ss_dssp             HHCTT
T ss_pred             HHhCC
Confidence            76653

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19

Probab=82.37  E-value=28  Score=31.45  Aligned_cols=184  Identities=15%  Similarity=0.139  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-----hhHHHHHHHHHHHHcCC
Q 007863          373 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-----GFFDDKLGALCMQWLKD  447 (587)
Q Consensus       373 ~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~d  447 (587)
                      .+-+..-..+......-|........+..++        .+|+..++.+..+......     +.+.+.++..++.--++
T Consensus        13 ~lY~~~S~~Is~~va~~G~~~~k~~~vr~lR--------~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~   84 (321)
T 1w9c_A           13 NVYKCLSENISAAIQANGEMVTKQPLIRSMR--------TVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQR   84 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHCSGGGGSHHHHHHH--------HHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCchhhccHHHHHHH--------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHh


Q ss_pred             CchHHHHH-HHHHHHHHHHHhChhhhhhchHHHHHhhhc-----------CCccHHHHHHHHHHHHhhcccChH------
Q 007863          448 KVYSIRDA-AANNVKRLAEEFGPDWAMQHIVPQVLEMIN-----------NPHYLYRMTILQAISLLAPVMGSE------  509 (587)
Q Consensus       448 ~~~~vr~~-a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~-----------~~~~~~r~~a~~~l~~l~~~~~~~------  509 (587)
                      ..+..|+. .+.++..++..++..  ....+|.+++..-           +..++.|......+.++...+-..      
T Consensus        85 ~vp~aRepeVL~l~~tii~kl~~~--i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~  162 (321)
T 1w9c_A           85 NVPAAREPEVLSTMAIIVNKLGGH--ITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPP  162 (321)
T ss_dssp             SCGGGCCTHHHHHHHHHHHHHGGG--GGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCH
T ss_pred             CCcccccHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCH


Q ss_pred             HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------HHHHHhHHHHHHH---hcCCCC
Q 007863          510 ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVVEKSIRPCLVE---LSEDPD  566 (587)
Q Consensus       510 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~---l~~d~~  566 (587)
                      ...+.++..+.-..+++.++|-..++.++..+...+..      ..+....++.+..   .++|++
T Consensus       163 ~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~  228 (321)
T 1w9c_A          163 TQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTS  228 (321)
T ss_dssp             HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCch

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=81.38  E-value=25  Score=30.11  Aligned_cols=75  Identities=12%  Similarity=0.041  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .++.+..+.+-+.+.++.+...++..|..++++.|..    .....++..+..+++. .++.||.-..+.+...+..+..
T Consensus        43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~  122 (226)
T 3zyq_A           43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRN  122 (226)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCC
Confidence            3556666677778999999999999999999988752    1122344444444443 3467888888887777765543

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=80.21  E-value=7.6  Score=30.13  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=48.5

Q ss_pred             HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHH---HHHHHhc-----CCC------CccHHHHHHHH
Q 007863          511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIR---PCLVELS-----EDP------DVDVRFFATQA  576 (587)
Q Consensus       511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~---~~l~~l~-----~d~------~~~Vr~~a~~a  576 (587)
                      +...++..+.+-+++.++++...+++.|..++..-. +.|...+.   ..+..+.     .|+      -.+||..|.++
T Consensus        46 ~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl  124 (140)
T 1vdy_A           46 IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHET  124 (140)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHH
Confidence            457899999999999999999999999999987643 33333222   2333332     132      25789999888


Q ss_pred             HHHHH
Q 007863          577 LQSKD  581 (587)
Q Consensus       577 l~~l~  581 (587)
                      +..|.
T Consensus       125 ~~ll~  129 (140)
T 1vdy_A          125 ISAIF  129 (140)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            87664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	587
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-135
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-30
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-13
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	3e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	7e-04
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	2e-14
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-08
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-14
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	1e-12
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	1e-10
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-10
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-06
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	9e-10
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	2e-09
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	0.004
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-09
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	5e-08
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-07
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-06
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	1e-07
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	7e-04
d1qgra_	876	a.118.1.1 (A:) Importin beta {Human (Homo sapiens)	5e-06
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	1e-04
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	2e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	0.002

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  404 bits (1037), Expect = e-135
 Identities = 340/579 (58%), Positives = 440/579 (75%), Gaps = 4/579 (0%)

Query: 5   DEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVL 64
           D+ LYPIAVLIDEL+N+D+QLRLNSI++LSTIA ALG ERTR EL+PFL++   D+DEVL
Sbjct: 6   DDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVL 65

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVE 124
           LA+AE+LG F   VGG EY + LLPPLE+L TVEET VRDKAVESL  I  +    D+  
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 125 HFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAA 184
           HF+PLVKRLA G+WFT+R S+CGLF V YP    A+K ELR  +R LC DD PMVRR+AA
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILP 244
           + LG+FA  +E  ++KSEI+ +F  L  D+QDSVRLLAVE C  + +LL  +D  A ++P
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMP 245

Query: 245 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKV 304
            +   ++DKSWRVRYMVA++  EL +AVGPE T++D+VPA+  L++D EAEVR AA+ KV
Sbjct: 246 TLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKV 305

Query: 305 TKICRILNPELA----IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
            + C  L+ +      +  ILPC+KEL SD++QHV+SALA+VIMG++PILGKD TIE LL
Sbjct: 306 KEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLL 365

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
           P+FL+ LKDE P+VRLNIIS LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           +PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +N+K+L E+FG +WA   I+P+V
Sbjct: 426 MPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKV 485

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQS 540
           L M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ 
Sbjct: 486 LAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545

Query: 541 LIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579
           + PI+D S ++  ++P L +L++D DVDV++FA +AL  
Sbjct: 546 IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTV 584

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 7e-30
 Identities = 91/503 (18%), Positives = 190/503 (37%), Gaps = 7/503 (1%)

Query: 6   EPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLL 65
             L P   L      ++  +R  ++  L  I+            +P +      D     
Sbjct: 86  HCLLPP--LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSR 143

Query: 66  AMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEH 125
             A  L               L      LC+ +   VR  A   L      +   +V   
Sbjct: 144 TSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203

Query: 126 FIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP-EALKTELRTIYRQLCQDDMPMVRRSAA 184
            IP+   LA+ E  + R+ +           P E L+  +    RQ  +D    VR   A
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263

Query: 185 TNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVA 240
               +    V     K++++  F+ L +D +  VR  A        + L         ++
Sbjct: 264 DKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS 323

Query: 241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAA 300
            ILP I     D +  V+  +A+ +  L   +G + T   ++P ++  L+D   EVR+  
Sbjct: 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNI 383

Query: 301 AGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL 360
              +  +  ++      Q +LP + EL+ D+   VR A+   +  +A  LG +   E+L 
Sbjct: 384 ISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN 443

Query: 361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 420
            + ++ L D    +R    S L ++ +  G +    +++P ++ ++ D ++  R+  +  
Sbjct: 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC 503

Query: 421 IPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQV 480
           I +L+   G       +    ++   D V ++R   A +++++            + P +
Sbjct: 504 INVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPIL 563

Query: 481 LEMINNPHYLYRMTILQAISLLA 503
            ++  +     +    +A+++L+
Sbjct: 564 EKLTQDQDVDVKYFAQEALTVLS 586

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-14
 Identities = 53/403 (13%), Positives = 133/403 (33%), Gaps = 21/403 (5%)

Query: 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYM 260
            +++ +  +L +D    V+ LAV+  G L   +  +  V  I+  +         ++R +
Sbjct: 44  RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDI 102

Query: 261 VANQLYELCEAVGPEPTRSDVVPAYVR---------LLRDNEAEVRIAAAGKVTKICRIL 311
            +  L  +   + P  + S +     +         + +  +  V++ A   +  +    
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162

Query: 312 NPELAIQH--ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKD 369
              L   H  IL C+    +     VR      +  +    G    ++ +  +   L K+
Sbjct: 163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKN 222

Query: 370 EFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 427
           +        I  +  +++  G  +      ++P +V+        +R   I+       +
Sbjct: 223 DSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR 282

Query: 428 LGVGF--FDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN 485
                      +  +C+++L        D    +   +  + G D              +
Sbjct: 283 CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGS--DDEYSDDD 340

Query: 486 NPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
           +  +  R    + +  +       +      + P +I+  K+R  N+K +V     SL+ 
Sbjct: 341 DMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL- 399

Query: 544 IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMMS 586
              + V      P  +E  E P   ++      +++  + M  
Sbjct: 400 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE 442

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-13
 Identities = 44/261 (16%), Positives = 90/261 (34%), Gaps = 21/261 (8%)

Query: 157  PEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQD 216
             E      + I           +R  A  +LG+    ++ +    E+ S+  E      +
Sbjct: 809  KEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQL-ELKSVILEAFSSPSE 867

Query: 217  SVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-- 274
             V+  A    G++         +   LP ++        + +Y++ + L E+  +     
Sbjct: 868  EVKSAASYALGSISV-----GNLPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASVVG 921

Query: 275  -EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQ 333
             +P   ++    ++     E   R   A  + K+  I    L     LP +K      S 
Sbjct: 922  LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-----LPRLKGYLISGSS 976

Query: 334  HVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG- 390
            + RS++ T +        +  D  ++  +  FL  L+D   +VR   +   +        
Sbjct: 977  YARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPS 1036

Query: 391  --IDLLSQSLLPAIVELAEDR 409
               DLL   +LP +    + R
Sbjct: 1037 LIRDLLDT-VLPHLYNETKVR 1056

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (154), Expect = 3e-11
 Identities = 58/420 (13%), Positives = 126/420 (30%), Gaps = 26/420 (6%)

Query: 177  PMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE-- 234
             + R +    L   A +     L+  +      L    + + R L +    AL  L++  
Sbjct: 619  EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 678

Query: 235  ----PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRSDVVPAYVRL 288
                    +  +L  +     +    V  M  + L  L +            ++   + L
Sbjct: 679  SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGL 738

Query: 289  LRD-------NEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALAT 341
            +R          A +    A  VT    +   +L      P   + ++ + +    ++A 
Sbjct: 739  VRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAK 798

Query: 342  VIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 401
             +  +     K+        I           +RL  +  L +V   I +    + L   
Sbjct: 799  CVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLE-LKSV 857

Query: 402  IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVK 461
            I+E        V+ A    +  ++      +    L  +  Q    + Y +  +    + 
Sbjct: 858  ILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQP--KRQYLLLHSLKEIIS 915

Query: 462  RLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVIN 521
              +      +    I   +L+         R  + + +  L  +         LLP +  
Sbjct: 916  SASVVGLKPYVEN-IWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-----LLPRLKG 969

Query: 522  ASKDRVPNIKFNVAKVLQSLIPIVDQSVVE--KSIRPCLVELSEDPDVDVRFFATQALQS 579
                     + +V   ++  I    Q +    K+     ++  EDPD++VR  A     S
Sbjct: 970  YLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNS 1029

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 7e-04
 Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 475 HIVPQVLEMINNPHYLYR-------MTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 527
           + +  +LE + +    +R       MT LQ  S+       + +  +++ +++   +D+ 
Sbjct: 3   YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL----DDDSERKVVKMILKLLEDKN 58

Query: 528 PNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS 579
             ++    K L  L+  V +  VE +I   L          +R  ++  L++
Sbjct: 59  GEVQNLAVKCLGPLVSKVKEYQVE-TIVDTLCTNMLSDKEQLRDISSIGLKT 109

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (149), Expect = 1e-10
 Identities = 58/439 (13%), Positives = 138/439 (31%), Gaps = 44/439 (10%)

Query: 164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVE---AAHLKSEIMSIFEELTQDDQDSVRL 220
           L  +  +L  +D P  R  +   L              +   I S       D    +R 
Sbjct: 48  LIFVLTKLKSEDEP-TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRA 106

Query: 221 LAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-- 278
                   +    E Q+    +LP + +    + +         L ++CE          
Sbjct: 107 TVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV 165

Query: 279 -----SDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH--ILPCVKELSSDS 331
                + ++P +++  + +  ++R  A   V +        L +        +  L+ D 
Sbjct: 166 LDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDE 225

Query: 332 SQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 389
              VR  +   ++ +  +        +  ++   L   +D+  +V L        + +  
Sbjct: 226 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 285

Query: 390 GIDLLSQSLLPAIVELAEDRHWRVRLAII---------EYIPLLASQLGVGFFDDKLGAL 440
               +    LP ++ +  +      + II         E IP     +   F   +  A 
Sbjct: 286 ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQ 345

Query: 441 CM----------------QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMI 484
                                    +++R  +A  +  LA  +  D  + HI+P + E++
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLLKELL 404

Query: 485 NNPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLI 542
            +  ++ + + +  +  +A      +     +L+P +I    D+   ++      L    
Sbjct: 405 FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYA 464

Query: 543 PIVDQSVVEKSIRPCLVEL 561
             V     +  ++P + EL
Sbjct: 465 HWVVSQPPDTYLKPLMTEL 483

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 5e-10
 Identities = 74/527 (14%), Positives = 166/527 (31%), Gaps = 61/527 (11%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGV 73
            ++ + +    +R      ++TIA     +    +L+P L    D +D      A     
Sbjct: 93  CLNNIGDSSPLIRATVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGA----- 146

Query: 74  FIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRL 133
                               L  + E        + L            +   IP   + 
Sbjct: 147 -----------------FGALQKICEDSAEILDSDVL---------DRPLNIMIPKFLQF 180

Query: 134 AAGEWFTARVSSCGLFHVAYPSAPEALKTELRTI---YRQLCQDDMPMVRRSAATNLGKF 190
                   R  +    +    S  +AL   + +       L  D+ P VR++    L   
Sbjct: 181 FKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVML 240

Query: 191 AATVEAAHLK--SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVN 248
                   L     I+    + TQD  ++V L A E    L +    +D +   LP ++ 
Sbjct: 241 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIP 300

Query: 249 FSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKIC 308
              +        +     ++ E      +  D+ P +           R  A        
Sbjct: 301 VLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRF--------HRSRTVAQQHDEDGI 352

Query: 309 RILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLK 368
              + +           +  + S  ++R   +   + +   + +D  +  +LP+   LL 
Sbjct: 353 EEEDDDDDEID------DDDTISDWNLRKC-SAAALDVLANVYRDELLPHILPLLKELLF 405

Query: 369 DEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVR----LAIIEYIP 422
                V+ + I  L  + +     +      L+P +++   D+   VR      +  Y  
Sbjct: 406 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465

Query: 423 LLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQHIVPQV 480
            + SQ    +    +  L ++ + D    +++AA +    L EE   +    + +I+  +
Sbjct: 466 WVVSQPPDTYLKPLMTEL-LKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTL 524

Query: 481 LEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRV 527
           +   +   +   + +  AI  LA  +G  +   + + +++     + 
Sbjct: 525 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 571

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 62/432 (14%), Positives = 131/432 (30%), Gaps = 45/432 (10%)

Query: 3   MIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE------- 55
             DE         D+  +DD  +   ++R+ S  A  +     R EL+P +         
Sbjct: 346 QHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLF 405

Query: 56  NNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGS 115
           +++   +    +           G + Y   L+P L    + ++  VR     +L R   
Sbjct: 406 HHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465

Query: 116 QMREQDVVEHFIPLVKRLAAG---EWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQL- 171
            +  Q    +  PL+  L           + ++C  F      A   L   L  I   L 
Sbjct: 466 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLV 525

Query: 172 -----CQDDMPMVRRSAATNLGKFAAT--VEAAHLKSEIMSIFEELTQDDQDSVRLLAVE 224
                 Q    ++   A   L         +  +++  +  + ++      +   L  + 
Sbjct: 526 FAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLL 585

Query: 225 GCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPA 284
            C +          + +  PV           +   + N                     
Sbjct: 586 ECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD---------------- 629

Query: 285 YVRLLRDNEAEVRIAAAGKVTKICRILN----PELAIQHILPCVKELSSDSSQHVRSALA 340
                   + +  I A   ++ +   L       +A  +IL  + +   D    VR +  
Sbjct: 630 ---QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 686

Query: 341 TVIMGMAPILGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS--Q 396
            ++  +     +     I   +PI  + L  EF  V  N    + +++  +GI++     
Sbjct: 687 ALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP 746

Query: 397 SLLPAIVELAED 408
            +L  +VE+   
Sbjct: 747 MVLHQLVEIINR 758

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 57.0 bits (137), Expect = 9e-10
 Identities = 51/303 (16%), Positives = 83/303 (27%), Gaps = 97/303 (32%)

Query: 91  LETLCTVEETCVRDKAVESLCRIGSQMRE--QDVVEHFIPLVKRLAAGEWFTARVSSCGL 148
           L   CT  + CV  ++   + R            +       + +A              
Sbjct: 17  LTGRCTPGDACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRY----------- 65

Query: 149 FHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFE 208
                 S  EAL          L +D   +VRR+ A  L +                   
Sbjct: 66  ------SPVEAL--------TPLIRDSDEVVRRAVAYRLPR---------------EQLS 96

Query: 209 ELTQDDQDSVRLLAVEGCG--ALGKLLEPQD-------CVAHILPVIVNFSQDKSWRVRY 259
            L  D+   VR+   +      L ++   +D               +  F +D+  +VR 
Sbjct: 97  ALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRK 156

Query: 260 MVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH 319
           +VA               +     +   + +D E EVR   A ++               
Sbjct: 157 LVA---------------KRLPEESLGLMTQDPEPEVRRIVASRL--------------- 186

Query: 320 ILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII 379
               + EL  D    VR A                  E      L  L +  P+VRL I 
Sbjct: 187 RGDDLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPEVRLAIA 230

Query: 380 SKL 382
            +L
Sbjct: 231 GRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 56.3 bits (135), Expect = 2e-09
 Identities = 34/200 (17%), Positives = 61/200 (30%), Gaps = 49/200 (24%)

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAG-------------KVTKICRILNPELAIQHILPCV 324
           R   V A   L+RD++  VR A A              +  ++   +   L ++ +    
Sbjct: 64  RYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMA 123

Query: 325 K-----ELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNII 379
                   +    +     L   +      + K             + +D  P+VR  + 
Sbjct: 124 ADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVA 183

Query: 380 SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA 439
           S+L                   ++EL  D  W VRLA +E+  L A              
Sbjct: 184 SRLR---------------GDDLLELLHDPDWTVRLAAVEHASLEA-------------- 214

Query: 440 LCMQWLKDKVYSIRDAAANN 459
             ++ L +    +R A A  
Sbjct: 215 --LRELDEPDPEVRLAIAGR 232

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 41/266 (15%), Positives = 68/266 (25%), Gaps = 92/266 (34%)

Query: 38  RALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTV 97
           RA+    +  E +  L    D D+ V  A+A  L                   L  L   
Sbjct: 59  RAIAVRYSPVEALTPLI--RDSDEVVRRAVAYRLPR---------------EQLSALMFD 101

Query: 98  EETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAP 157
           E+  VR    + L                +  ++++AA   +  R               
Sbjct: 102 EDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPP------ 140

Query: 158 EALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS 217
                       +  +D+   VR+  A  L                      +TQD +  
Sbjct: 141 --------GRLFRFMRDEDRQVRKLVAKRLP---------------EESLGLMTQDPEPE 177

Query: 218 VRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 277
           VR +                        ++    D  W VR                   
Sbjct: 178 VRRIVASRLRG---------------DDLLELLHDPDWTVRLAAVEHA------------ 210

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGK 303
                   +R L + + EVR+A AG+
Sbjct: 211 ----SLEALRELDEPDPEVRLAIAGR 232

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 1e-09
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 10/242 (4%)

Query: 166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEG 225
            +  +  Q     VR +A  NL K  +            ++F    +  +  +  +A++G
Sbjct: 219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 278

Query: 226 CGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAY 285
                 + + +  +A          +      ++     L  L   +    T+ D     
Sbjct: 279 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND-- 336

Query: 286 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 345
                D++      AAG    +      +  + H+LP +KE   +     R A       
Sbjct: 337 -----DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGC 391

Query: 346 MAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 402
           +            + Q +P  + L+KD    VR      + ++ +++    ++   L  +
Sbjct: 392 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 451

Query: 403 VE 404
           ++
Sbjct: 452 LQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 5e-08
 Identities = 56/378 (14%), Positives = 106/378 (28%), Gaps = 29/378 (7%)

Query: 11  IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDD------EVL 64
           +   + +    +     ++ + ++ IA A        ELIP L  N  + +      E  
Sbjct: 90  VKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKEST 149

Query: 65  LAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETC--VRDKAVESLCR----IGSQMR 118
           L     +   I      + +N +L  +      EE    V+  A  +L        +   
Sbjct: 150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD 209

Query: 119 EQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQ----D 174
           ++      + +V           RV++            + ++T +      +       
Sbjct: 210 KESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 269

Query: 175 DMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE 234
           D+  V                      E M +  E ++  +            A G L  
Sbjct: 270 DIDEVALQGIEFWSNVC---------DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 320

Query: 235 PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA 294
               +   L        D  W      A     L      +     V+P     +++ + 
Sbjct: 321 LVPILTQTLTKQDENDDDDDWN-PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDW 379

Query: 295 EVRIAAAGKVTKICRILNPELAIQH---ILPCVKELSSDSSQHVRSALATVIMGMAPILG 351
             R AA      I     P          +P + EL  D S  VR   A  +  +  +L 
Sbjct: 380 RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439

Query: 352 KDATIEQLLPIFLSLLKD 369
           + A  +  L   L  L +
Sbjct: 440 EAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 54/418 (12%), Positives = 118/418 (28%), Gaps = 33/418 (7%)

Query: 127 IPLVKRLAAGEWFTARVSS-----CGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRR 181
              V R+AAG      ++S        +   + +     + E++    Q    +      
Sbjct: 48  NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTE-TYRPS 106

Query: 182 SAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDS--VRLLAVEGCGALGKLLEPQDCV 239
           SA+  +   A      +   E++        +   +  ++   +E  G + + ++P+   
Sbjct: 107 SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 166

Query: 240 AHILPVIVNFSQ-----DKSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLR 290
                ++    Q     + S  V+    N L    E        E  R  ++       +
Sbjct: 167 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 226

Query: 291 DNEAEVRIAAAGKVTKICRILNPELA---IQHILPCVKELSSDSSQHVRSALATVIMGMA 347
             +  VR+AA   + KI  +    +       +     E        V          + 
Sbjct: 227 CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 286

Query: 348 PILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 407
                 A             +          +  L  +                  E  +
Sbjct: 287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD---------ENDD 337

Query: 408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF 467
           D  W    A    + LLA+          L  +  + +K+  +  RDAA      + E  
Sbjct: 338 DDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI-KEHIKNPDWRYRDAAVMAFGCILEGP 396

Query: 468 GPDWAMQH---IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINA 522
            P          +P ++E++ +P  + R T    +  +  ++         L  ++  
Sbjct: 397 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 454

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 6e-06
 Identities = 57/394 (14%), Positives = 114/394 (28%), Gaps = 65/394 (16%)

Query: 200 KSEIMSIFEELTQDDQDSVR----LLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSW 255
           + E+ +   +    +          +A   C  +     P+     +  V    S +   
Sbjct: 87  RREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMK 146

Query: 256 RVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEA--EVRIAAAGKVTKICRILNP 313
                    + +  +    +   ++++ A ++ +R  E    V++AA   +         
Sbjct: 147 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 206

Query: 314 ----ELAIQHILPCVKELSSDSSQHVRSALATVI---MGMAPILGKDATIEQLLPIFLSL 366
               E     I+  V E +      VR A    +   M +     +      L  I +  
Sbjct: 207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 266

Query: 367 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 426
           +K +  +V L             GI+  S      +    E      +    E+     +
Sbjct: 267 MKSDIDEVALQ------------GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA 314

Query: 427 QLGVGFFDDKLGALCMQ---WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEM 483
           +  + +    L     +      D  ++   AA   +  LA     D  + H++P + E 
Sbjct: 315 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEH 373

Query: 484 INNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIP 543
           I NP + YR   + A   +            L+   +                       
Sbjct: 374 IKNPDWRYRDAAVMAFGCILEGPEPSQ-LKPLVIQAM----------------------- 409

Query: 544 IVDQSVVEKSIRPCLVELSEDPDVDVRFFATQAL 577
                       P L+EL +DP V VR  A   +
Sbjct: 410 ------------PTLIELMKDPSVVVRDTAAWTV 431

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 68/611 (11%), Positives = 159/611 (26%), Gaps = 82/611 (13%)

Query: 14  LIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSEN--NDDDDEVLLAMAEEL 71
            +  L + + ++   + + ++ IA          EL+  + +N   +  + V  A    L
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159

Query: 72  GVFIPYVGG-----LEYANVLLPPL--ETLCTVEETCVRDKAVESLCR----IGSQMREQ 120
           G             +  +N +L  +      T     VR  A+ +L      I + M  +
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219

Query: 121 DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLC----QDDM 176
               + + +V      E    + ++ G            +K  +      L     +   
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN 279

Query: 177 PMVRRSAATNLGKFAATVEAA----------------HLKSEIMSIFEELTQ-------- 212
             V                                     S I  +   L          
Sbjct: 280 DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339

Query: 213 -DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 271
            +D D    ++   C  L         +  +L  +       +WR R         + + 
Sbjct: 340 PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDG 399

Query: 272 VGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL- 327
                        +P+ + L+ D   +V+   A  + +I   +   +  Q  LP V +  
Sbjct: 400 PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQAC 459

Query: 328 --SSDSSQHVRSALATVIMGMAPILGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKL 382
                    V +  +  I+ +   L +            +   L+               
Sbjct: 460 LIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS 519

Query: 383 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG----------- 431
                   ++  + ++      ++     ++   +      L  +               
Sbjct: 520 AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTV 579

Query: 432 --------------FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA--MQH 475
                           D  +G       K     I D     +  LA   G  +   ++ 
Sbjct: 580 LAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET 639

Query: 476 IVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT--CSQLLPVVINASKDR--VPNIK 531
             P +L+ +N       +T +  I+ ++  +  +       ++ V+     +      +K
Sbjct: 640 FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELK 699

Query: 532 FNVAKVLQSLI 542
             V  V   + 
Sbjct: 700 PAVLSVFGDIA 710

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 7e-04
 Identities = 43/371 (11%), Positives = 111/371 (29%), Gaps = 47/371 (12%)

Query: 201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLE--PQDCVAHILPVIVNFSQDKSWRVR 258
           +E   + E        ++RL +      L KL              V+++  ++     R
Sbjct: 4   AEFAQLLENSILSPDQNIRLTSET---QLKKLSNDNFLQFAGLSSQVLID--ENTKLEGR 58

Query: 259 YMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQ 318
            + A  L     +     T+        ++  + + +++                     
Sbjct: 59  ILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIK--------------------T 98

Query: 319 HILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPD-VRLN 377
           + L  +          + +A A +I  +A I        +L+ I +     E P+ V+  
Sbjct: 99  NALTAL----VSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRA 154

Query: 378 IISKLDQVNQVIGIDLLS-----QSLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGV 430
            +  L  + +       +      ++L AIV+ A+       VRLA +  +      +  
Sbjct: 155 SLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN 214

Query: 431 GFFDDKLGALCMQW----LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINN 486
               +      MQ      + +   ++ AA   + ++  ++                I  
Sbjct: 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIAT 274

Query: 487 PHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 546
                       +   + +   EI    +   +    +  + +  F     ++ ++P + 
Sbjct: 275 MKSPNDKVASMTVEFWSTICEEEI---DIAYELAQFPQSPLQSYNF-ALSSIKDVVPNLL 330

Query: 547 QSVVEKSIRPC 557
             +  ++  P 
Sbjct: 331 NLLTRQNEDPE 341

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 84/626 (13%), Positives = 172/626 (27%), Gaps = 76/626 (12%)

Query: 20  NDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE---NNDDDDEVLLAMAEELGVFIP 76
             +     ++ + ++ IA A        ELIP L     N +  + +  +  E +G    
Sbjct: 100 GTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQ 159

Query: 77  YVGG---LEYANVLLPPLETLCTVEETCVRDKA------VESLCRIGSQMREQDVVEHFI 127
            +      + +N +L  +      EE     K       + SL    +   ++      +
Sbjct: 160 DIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219

Query: 128 PLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLC----QDDMPMVRRSA 183
            +V           RV++            + ++T +      +     + D+  V    
Sbjct: 220 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQG 279

Query: 184 ATNLGKFAATVEAAHLKS------------------------------EIMSIFEELTQD 213
                          +++                              + ++  +E   D
Sbjct: 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDD 339

Query: 214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELCE 270
           D  +    A      L       D V H+LP I    ++  WR R    M    + E  E
Sbjct: 340 DDWNPCKAAGVCLMLLATCC-EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE 398

Query: 271 AVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELA----IQHILPCVKE 326
               +P     +P  + L++D    VR  AA  V +IC +L         +  +L C+ E
Sbjct: 399 PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458

Query: 327 LSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 386
             S   +   +                   +         L   F  +   ++   D+  
Sbjct: 459 GLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR-- 516

Query: 387 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL------GVGFFDDKLGAL 440
                D    +L  +  E   +            +      +       +          
Sbjct: 517 ----PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572

Query: 441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMIN--NPHYLYRMTILQA 498
                 D    +     N ++++  +     +   ++  +L M          +   L A
Sbjct: 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQIS-DVVMASLLRMFQSTAGSGGVQEDALMA 631

Query: 499 ISLLAPVMGSEIT--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEK---S 553
           +S L  V+G E         P +    K+         A  L   +    QS +      
Sbjct: 632 VSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691

Query: 554 IRPCLVELSEDPDV--DVRFFATQAL 577
           +   L+E   + +V   V+       
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVF 717

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 45/294 (15%)

Query: 286 VRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMG 345
            RLL D+ +  RI++A    ++ ++   + A++  +    E  SD +   R   A ++  
Sbjct: 25  FRLLDDHNSLKRISSA----RVLQLRGGQDAVRLAI----EFCSDKNYIRRDIGAFILGQ 76

Query: 346 MAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 405
           +     K         +    L D+   VR   I    Q  +     + S  ++      
Sbjct: 77  IKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 406 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAE 465
           A D+   VR A    I        +         + +    +       A A N+ +   
Sbjct: 133 AFDKSTNVRRATAFAIS------VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 186

Query: 466 EFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD 525
               D  ++ +  +  E+                              ++L V+ +  K 
Sbjct: 187 SDIRDCFVEMLQDKNEEVRIEAIIGLSY----------------RKDKRVLSVLCDELKK 230

Query: 526 RVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVE-LSEDPDVDVRFFATQALQ 578
               +  ++ +    L         +K++ P L   L +  D ++   A   L+
Sbjct: 231 --NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 45/270 (16%), Positives = 78/270 (28%), Gaps = 40/270 (14%)

Query: 170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGAL 229
           +L  D   + R S+A  L              + + +  E   D     R +     G +
Sbjct: 26  RLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQI 77

Query: 230 GKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLL 289
               + +D V +IL        DKS  VR        + C+          +V       
Sbjct: 78  KICKKCEDNVFNIL--NNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQITA 133

Query: 290 RDNEAEVRIAAAGKVTKICRILNPELAIQ-----------------HILPCVKELSSDSS 332
            D    VR A A  ++ I       L I                  +I         D  
Sbjct: 134 FDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCF 193

Query: 333 QHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392
             +       +   A I       +++L +    LK     V  +II    +        
Sbjct: 194 VEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKK--NTVYDDIIEAAGE-------- 243

Query: 393 LLSQSLLPAIVE-LAEDRHWRVRLAIIEYI 421
           L  ++LLP +   L +     +  + I+ +
Sbjct: 244 LGDKTLLPVLDTMLYKFDDNEIITSAIDKL 273

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 33/269 (12%), Positives = 79/269 (29%), Gaps = 15/269 (5%)

Query: 278 RSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAI---QHILPCVKEL--SSDSS 332
            +  +P   +LL D +  V   AA  V ++ +      AI     ++  +     +++  
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74

Query: 333 QHVRSALATVIMGMAPILGKDATIEQ-LLPIFLSLLKDEFPDVRLNIISKLD---QVNQV 388
           +  R    T+        G  A  +   +P  + +L      V    I+ L       + 
Sbjct: 75  ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 389 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS------QLGVGFFDDKLGALCM 442
             + +     L  +V L    + +      + + +LA        + +     +     M
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 443 QWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLL 502
           +    +      +    V  +     P       +  +   + +P        L  +  L
Sbjct: 195 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 503 APVMGSEITCSQLLPVVINASKDRVPNIK 531
           +     +     LL  ++        N+ 
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVV 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	587
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.96
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.96
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.95
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.95
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.94
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.94
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.91
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.79
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.74
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.71
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.68
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.68
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.6
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.59
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.27
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.25
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.24
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.24
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.14
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.06
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.86
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	98.76
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.01
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.96
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	95.54
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	95.5
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.8
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.46
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	91.22
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	91.18
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	90.08
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	88.59
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	88.31
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.05
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	81.91
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	80.85
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	80.37

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-66  Score=533.63  Aligned_cols=581  Identities=59%  Similarity=0.962  Sum_probs=548.7

Q ss_pred             CCCCCCCcccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCC
Q 007863            1 MAMIDEPLYPIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG   80 (587)
Q Consensus         1 ~~~~~~~~~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~   80 (587)
                      .+++|++++||+.|++.|+|+|+.+|..|++.++.++..+|++++.++++|++.+..+++++|+..+++.++++.+++|+
T Consensus         2 ~~~~~~~~~~i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~ev~~~~~~~l~~~~~~~~~   81 (588)
T d1b3ua_           2 AADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGG   81 (588)
T ss_dssp             CSCTTTSSHHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTS
T ss_pred             CCCcCcchhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999999999999999999999999998888889999999999999999999


Q ss_pred             cchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHH
Q 007863           81 LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEAL  160 (587)
Q Consensus        81 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~  160 (587)
                      .++.+.+++.+..++.++++.||..|++++..++...+++.+...+.|++.++.+++++..|..++.+++.+++..++..
T Consensus        82 ~~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~  161 (588)
T d1b3ua_          82 PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV  161 (588)
T ss_dssp             GGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH
T ss_pred             hhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhh
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVA  240 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  240 (587)
                      ...+++.+..+++|+++.||+.++.+++.+++..+.+...+.++|.+..+.+|+++.||..++.++..++..++.+....
T Consensus       162 ~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~  241 (588)
T d1b3ua_         162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEA  241 (588)
T ss_dssp             HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHH
Confidence            89999999999999999999999999999999888877888999999999999999999999999999999988877778


Q ss_pred             chHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HH
Q 007863          241 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LA  316 (587)
Q Consensus       241 ~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~  316 (587)
                      .++|.+..+++|++|.||..++++|+.++..++.+.....++|.+..+++|.+++||..++.+++.++..++..    .+
T Consensus       242 ~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~  321 (588)
T d1b3ua_         242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI  321 (588)
T ss_dssp             HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            89999999999999999999999999999988876666789999999999999999999999999999987653    34


Q ss_pred             HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhh
Q 007863          317 IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ  396 (587)
Q Consensus       317 ~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~  396 (587)
                      .+.++|.+...++|.++.||..++.++..++..++.+...+.++|.+...++|++++||..++.+++.+...+|.....+
T Consensus       322 ~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~  401 (588)
T d1b3ua_         322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQ  401 (588)
T ss_dssp             HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhh
Confidence            57889999999999999999999999999999999888888999999999999999999999999999999998888888


Q ss_pred             hhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhch
Q 007863          397 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHI  476 (587)
Q Consensus       397 ~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~  476 (587)
                      .++|.+...++|++|++|..+++.++.++..+|.+.+.+.+.+.+..++.|+.+.||.+|+.+++.++..+|.++..+.+
T Consensus       402 ~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i  481 (588)
T d1b3ua_         402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI  481 (588)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            99999999999999999999999999999999998888999999999999999999999999999999999999888889


Q ss_pred             HHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHH
Q 007863          477 VPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRP  556 (587)
Q Consensus       477 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~  556 (587)
                      +|.+.++..+++|..|.+++.+++.+...++.+.+.++++|.+.++++|+.++||.+++++++.+.+.++...+...+.|
T Consensus       482 ~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~  561 (588)
T d1b3ua_         482 IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKP  561 (588)
T ss_dssp             HHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHH
Confidence            99999999999999999999999999998888888899999999999999999999999999999999998888889999


Q ss_pred             HHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          557 CLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       557 ~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      .+.++.+|+|.+||..|.+|++.++
T Consensus       562 ~l~~L~~D~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         562 ILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-47  Score=390.58  Aligned_cols=529  Identities=21%  Similarity=0.289  Sum_probs=475.6

Q ss_pred             cccCCchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhh
Q 007863           55 ENNDDDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLA  134 (587)
Q Consensus        55 ~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~  134 (587)
                      +..+++..+|..+++.++.++..+|.+.....++|.|.+++.+++ .++..+++.++.+....+.......++|.+..+.
T Consensus        18 ~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~l~   96 (588)
T d1b3ua_          18 ELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLA   96 (588)
T ss_dssp             HTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHT
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHc
Confidence            355678899999999999998888866667889999999887765 5777888899888887766666778899999999


Q ss_pred             cCCCCcchhhHHhhhhhhccCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc
Q 007863          135 AGEWFTARVSSCGLFHVAYPSAPEA-LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD  213 (587)
Q Consensus       135 ~~~~~~~r~~a~~l~~~~~~~~~~~-~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d  213 (587)
                      .+++..+|..|+..+..+....++. ..+.+.|++..+..++....|..++..++.+....+. .....+.+.+.++++|
T Consensus        97 ~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~-~~~~~l~~~~~~l~~D  175 (588)
T d1b3ua_          97 TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSD  175 (588)
T ss_dssp             TSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcc
Confidence            8888889999999888888877765 5567889999999999889999999988888766544 5567788999999999


Q ss_pred             CchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCCh
Q 007863          214 DQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNE  293 (587)
Q Consensus       214 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  293 (587)
                      +++.||..++.+++.+++..+.+...+.++|.+..+++|+++.||..++.+++.++..++.+.....++|.+..+++|++
T Consensus       176 ~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~  255 (588)
T d1b3ua_         176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKS  255 (588)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999887778899999999999999999999999999999887765555668999999999999


Q ss_pred             HHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCC
Q 007863          294 AEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKD  369 (587)
Q Consensus       294 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d  369 (587)
                      |.||..++.+++.+...++++...+.++|.+..+++|+++.||..++..++.++..++.    ..+.+.++|.+...+.|
T Consensus       256 ~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d  335 (588)
T d1b3ua_         256 WRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD  335 (588)
T ss_dssp             HHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcC
Confidence            99999999999999999998877788999999999999999999999999999877653    23557889999999999


Q ss_pred             CChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCc
Q 007863          370 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKV  449 (587)
Q Consensus       370 ~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  449 (587)
                      .++.||..++.++..++..+|.+...+.++|.+...+.|+++.+|..++..++.+....+.....+.++|.+...++|.+
T Consensus       336 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~  415 (588)
T d1b3ua_         336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK  415 (588)
T ss_dssp             SCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSS
T ss_pred             CChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhccc
Confidence            99999999999999999999988877889999999999999999999999999999988888888899999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCcc
Q 007863          450 YSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPN  529 (587)
Q Consensus       450 ~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~  529 (587)
                      |.+|..++.+++.++..+|.+.+.+.+.|.+..++.|+.+.+|.+|+.+++.+...+|.++....++|.+..+++|+++.
T Consensus       416 ~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~  495 (588)
T d1b3ua_         416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYL  495 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHH
Confidence            99999999999999999999887788999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          530 IKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       530 vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                      +|..++.+++.+.+.++.+.+.+.++|.+.++++|++++||..++++++.+...++
T Consensus       496 ~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         496 HRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999988888889999999999999999999999999999876543

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.8e-30  Score=275.43  Aligned_cols=523  Identities=16%  Similarity=0.114  Sum_probs=373.1

Q ss_pred             CchHHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh-------hHhhhhHHHHH
Q 007863           59 DDDEVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ-------DVVEHFIPLVK  131 (587)
Q Consensus        59 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-------~~~~~ll~~~~  131 (587)
                      .+..+|..++.+++.++.. .+...++.+++.|.+.+.+++..++..|+.+|+.+++.....       .....++|.+.
T Consensus       100 ~~~~vr~~~~~~i~~i~~~-~~~~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll  178 (888)
T d1qbkb_         100 SSPLIRATVGILITTIASK-GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL  178 (888)
T ss_dssp             CCSSTTTTTTTTTHHHHTT-TSSCSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH-hCccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHH
Confidence            3445555555555555543 234456788998888888889999999999999998754321       12344778888


Q ss_pred             HhhcCCCCcchhhHHhhhhhhccCCCH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHH
Q 007863          132 RLAAGEWFTARVSSCGLFHVAYPSAPE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSI  206 (587)
Q Consensus       132 ~l~~~~~~~~r~~a~~l~~~~~~~~~~---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~  206 (587)
                      +...++...+|..++..+..+....+.   ...+.+++.+.....|+++.||..+++++..+....++  ..+.+.+++.
T Consensus       179 ~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~  258 (888)
T d1qbkb_         179 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEY  258 (888)
T ss_dssp             TGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTT
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            888888888898888877666554432   35677888888999999999999999999888765443  1334456666


Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHh---------------------------------
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNF---------------------------------  249 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~---------------------------------  249 (587)
                      +....+|+++.+|..|++.+..+++.-..    ....+.++|.+...                                 
T Consensus       259 ~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  338 (888)
T d1qbkb_         259 MLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFH  338 (888)
T ss_dssp             TTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCC
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence            66778888999999999887766542110    00111111111100                                 


Q ss_pred             ---------------------------cCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHH
Q 007863          250 ---------------------------SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAG  302 (587)
Q Consensus       250 ---------------------------~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  302 (587)
                                                 ..+..|.+|..+..+++.++...+++. .+.+++.+.+.+++++|.+|++|+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~i-l~~~l~~l~~~l~s~~~~~reaa~~  417 (888)
T d1qbkb_         339 RSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDEL-LPHILPLLKELLFHHEWVVKESGIL  417 (888)
T ss_dssp             CCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSS-HHHHHHHHHHTTTSSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHH-HHHHHHHHHHhhccchhHHHHHHHH
Confidence                                       011347789999999888887666543 4567888888999999999999999


Q ss_pred             hHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc---hHHHHHhHHHHHHHhcCCCChHHHHH
Q 007863          303 KVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG---KDATIEQLLPIFLSLLKDEFPDVRLN  377 (587)
Q Consensus       303 ~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~  377 (587)
                      +++.+++.....  .+.+.++|.+...++|+++.||.+++.+++.++..+.   .+.+...+++.+...+.|+++.||..
T Consensus       418 alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~  497 (888)
T d1qbkb_         418 VLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEA  497 (888)
T ss_dssp             HHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHH
T ss_pred             HhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHH
Confidence            999987754332  3457788999999999999999999999999987654   23355678888889999999999999


Q ss_pred             HHHHhHHhhhhhchh--hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh----HHHHHHHHHHHHc------
Q 007863          378 IISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF----FDDKLGALCMQWL------  445 (587)
Q Consensus       378 a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l------  445 (587)
                      ++.++..+.+..+..  .+.+.+++.+...+.+.+.+.+..+.++++.++...+...    +.+.++|.+....      
T Consensus       498 a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  577 (888)
T d1qbkb_         498 ACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE  577 (888)
T ss_dssp             HHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccc
Confidence            999999998776643  2345566666666676666666666666666655443221    1222222222111      


Q ss_pred             ------------------------------------------------------CCCchHHHHHHHHHHHHHHHHhChhh
Q 007863          446 ------------------------------------------------------KDKVYSIRDAAANNVKRLAEEFGPDW  471 (587)
Q Consensus       446 ------------------------------------------------------~d~~~~vr~~a~~~l~~l~~~~~~~~  471 (587)
                                                                            ...+.++...+...++.+++.+|..+
T Consensus       578 ~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~  657 (888)
T d1qbkb_         578 DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNI  657 (888)
T ss_dssp             CTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhh
Confidence                                                                  12234455556666666666666542


Q ss_pred             ---h-hhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          472 ---A-MQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       472 ---~-~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                         . ...+++.+...+.+.+..+|..+..+++.++..++..  .+.+.++|.+...+.++.+.++.+++.++|.++...
T Consensus       658 ~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         658 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT
T ss_pred             hhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH
Confidence               1 2346777788889999999999999999998876654  467889999999999999999999999999999887


Q ss_pred             chH--HHHHhHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHH
Q 007863          546 DQS--VVEKSIRPCLVELSEDPD--VDVRFFATQALQSKDQV  583 (587)
Q Consensus       546 ~~~--~~~~~i~~~l~~l~~d~~--~~Vr~~a~~al~~l~~~  583 (587)
                      +.+  ++...+++.|.+.+++++  ..|+.+++.|+++++..
T Consensus       738 ~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~  779 (888)
T d1qbkb_         738 GIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV  779 (888)
T ss_dssp             GGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence            754  566778888888776654  45999999999988764

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-25  Score=247.57  Aligned_cols=574  Identities=13%  Similarity=0.151  Sum_probs=417.6

Q ss_pred             ccHHHHHHHhcCccHHHHHHHhhcHHHHHHHhC---hhhhhhhhcccccccc-CCchHHHHHHHHHhcccccCcCCcchH
Q 007863            9 YPIAVLIDELKNDDIQLRLNSIRRLSTIARALG---EERTRKELIPFLSENN-DDDDEVLLAMAEELGVFIPYVGGLEYA   84 (587)
Q Consensus         9 ~~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~---~~~~~~~l~p~l~~~~-~~~~~v~~~~~~~l~~~~~~~~~~~~~   84 (587)
                      +.++.+++++.|+|++.|++|.+.|........   .+.....+++.+...+ |.+++||..+.++++.++..++. ...
T Consensus         3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~-~~~   81 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV   81 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH-hhH
Confidence            578999999999999999999888766532211   1222345667665544 67889999999999999888773 344


Q ss_pred             hhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh--------hHhhhhHHHHHHhhc-CCCCcchhhHHhhhhhhccC
Q 007863           85 NVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--------DVVEHFIPLVKRLAA-GEWFTARVSSCGLFHVAYPS  155 (587)
Q Consensus        85 ~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--------~~~~~ll~~~~~l~~-~~~~~~r~~a~~l~~~~~~~  155 (587)
                      ..+.+.|...+.+++..+|..+..++..+...++..        .....+++.+..... .++..++..++.+++.+..+
T Consensus        82 ~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          82 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            556666666666788899999999999988876532        223334455544433 34667788888777666544


Q ss_pred             CCH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          156 APE---ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       156 ~~~---~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      .+.   .....+++.+...+.++++.||+.++.+++.++...+...+.+.+-..+..+..+....+|..++.+++.++..
T Consensus       162 ~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~  241 (1207)
T d1u6gc_         162 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ  241 (1207)
T ss_dssp             TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred             hhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence            432   35677888888999999999999999999999988776444444444555555666777888899999999887


Q ss_pred             cCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCc--ccchHHHHHH---------------------
Q 007863          233 LEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RSDVVPAYVR---------------------  287 (587)
Q Consensus       233 ~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~l~~~l~~---------------------  287 (587)
                      .+.  ..+.+.++|.+.+.+.+.+..+|..++.++..++..++....  ...+++.+..                     
T Consensus       242 ~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~  321 (1207)
T d1u6gc_         242 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD  321 (1207)
T ss_dssp             SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred             cchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhh
Confidence            765  334677999999999999999999999999999876654321  1112222211                     


Q ss_pred             ----------------hcCCChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863          288 ----------------LLRDNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  349 (587)
Q Consensus       288 ----------------~l~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                                      ...|..|.+|..+++++..+....+..  .+.+.++|.+...+.|.++.||..+..++..+...
T Consensus       322 ~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~  401 (1207)
T d1u6gc_         322 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ  401 (1207)
T ss_dssp             --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred             hhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence                            123566899999999999998876542  44567889999999999999999999999887654


Q ss_pred             hch---------------------HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh--hHhhhhHHHHHHHh
Q 007863          350 LGK---------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA  406 (587)
Q Consensus       350 ~~~---------------------~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~--~~~~~~~~~l~~~~  406 (587)
                      .+.                     ....+.+++.+...+++.++.+|..+...+..+....+..  .+...+++.+...+
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l  481 (1207)
T d1u6gc_         402 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL  481 (1207)
T ss_dssp             HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred             ccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHH
Confidence            321                     1122456777888899999999999999999988766532  23355677777777


Q ss_pred             cCC--CcHHHHHHHHHHHHHHHhhChhhHH---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---------hh
Q 007863          407 EDR--HWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---------WA  472 (587)
Q Consensus       407 ~~~--~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---------~~  472 (587)
                      .+.  ...+|..++..+..+....+.+.+.   ..+.+.+...+.|+.+.++..+..+++.+...++..         .+
T Consensus       482 ~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~  561 (1207)
T d1u6gc_         482 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY  561 (1207)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH
T ss_pred             hcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHH
Confidence            664  4567888888888888776665544   346777888899999999999999999998876532         12


Q ss_pred             hhchHHHHHhhhc--CCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-
Q 007863          473 MQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-  547 (587)
Q Consensus       473 ~~~~~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-  547 (587)
                      ...+++.+...+.  +.+..+|..++.+++.+....+..  .....+++.+...+++  +..|..+++++..+...... 
T Consensus       562 ~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~--~~~r~~a~~~l~~i~~~~~~~  639 (1207)
T d1u6gc_         562 IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKN--EITRLTTVKALTLIAGSPLKI  639 (1207)
T ss_dssp             HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHTTCSSCC
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHhccch
Confidence            3455666655554  456789999999999988765543  2457788888887775  45789999999888654332 


Q ss_pred             --HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHhh
Q 007863          548 --SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVMM  585 (587)
Q Consensus       548 --~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~~  585 (587)
                        ......+++.+...+.+.++.+|..+..++..+....+
T Consensus       640 ~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~  679 (1207)
T d1u6gc_         640 DLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS  679 (1207)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc
Confidence              35556778888888899999999999999998876654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-27  Score=254.44  Aligned_cols=568  Identities=15%  Similarity=0.104  Sum_probs=380.9

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCC-chHHHHHHHHHhcccccCcC-------Ccch
Q 007863           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDD-DDEVLLAMAEELGVFIPYVG-------GLEY   83 (587)
Q Consensus        12 ~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~-~~~v~~~~~~~l~~~~~~~~-------~~~~   83 (587)
                      ..++..|.++++.+|..+...++.++...++ ..|++++|.|.+.+++ +.+++..+..+++.+++..+       ....
T Consensus        91 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~  169 (888)
T d1qbkb_          91 SECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRP  169 (888)
T ss_dssp             HHHTTGGGCCCSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHH
Confidence            4566888899999999999999999886655 4699999999886643 33444333344443332111       1123


Q ss_pred             HhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChh--hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH--
Q 007863           84 ANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA--  159 (587)
Q Consensus        84 ~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~--  159 (587)
                      ...+++.+.+...++++.+|..|+.++..+....+..  .....+++.+.....+++..+|..++..+..+....++.  
T Consensus       170 ~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~  249 (888)
T d1qbkb_         170 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL  249 (888)
T ss_dssp             STTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTT
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHH
Confidence            4567778878888888999999999988776544321  123445666666777777888888887776655433321  


Q ss_pred             -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------------------------------------------------
Q 007863          160 -LKTELRTIYRQLCQDDMPMVRRSAATNLGK-------------------------------------------------  189 (587)
Q Consensus       160 -~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~-------------------------------------------------  189 (587)
                       +...+++.+...++|++..||..+++.+..                                                 
T Consensus       250 ~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (888)
T d1qbkb_         250 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDS  329 (888)
T ss_dssp             TTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCC
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhh
Confidence             233344444455556666666655554433                                                 


Q ss_pred             ------------------------------------------------------HHHHHhhhhhHHHHHHHHHHhcccCc
Q 007863          190 ------------------------------------------------------FAATVEAAHLKSEIMSIFEELTQDDQ  215 (587)
Q Consensus       190 ------------------------------------------------------l~~~~~~~~~~~~i~~~l~~l~~d~~  215 (587)
                                                                            ++...+ +...+.+++.+.+.+++++
T Consensus       330 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~-~~il~~~l~~l~~~l~s~~  408 (888)
T d1qbkb_         330 EQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR-DELLPHILPLLKELLFHHE  408 (888)
T ss_dssp             GGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC-SSSHHHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhH-HHHHHHHHHHHHHhhccch
Confidence                                                                  322222 2344567777888888888


Q ss_pred             hhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCC---cccchHHHHHHhcC
Q 007863          216 DSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRSDVVPAYVRLLR  290 (587)
Q Consensus       216 ~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~  290 (587)
                      +.+|.+|+.+++.+++...+  ....+.++|.+...++|+++.||..++.+++.++.......   ....+++.+...+.
T Consensus       409 ~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~  488 (888)
T d1qbkb_         409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL  488 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHS
T ss_pred             hHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhc
Confidence            88888888888887765433  23456677888888888888888888888888877654432   23457777777788


Q ss_pred             CChHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHH
Q 007863          291 DNEAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFL  364 (587)
Q Consensus       291 d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~  364 (587)
                      |+++.||.+|+.+|..+.+..+..  .+.+.+++.+...+++.....+..+..+++.++...+.    ..+.+.++|.+.
T Consensus       489 d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~  568 (888)
T d1qbkb_         489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLI  568 (888)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence            888888888888888888776654  45566777777777777777777777777777665542    234555666665


Q ss_pred             HhcC---CCChHHHHHHHHHhHHhhhhhchhh--H----hhhhHHHHHHHh-------------cCCCcHHHHHHHHHHH
Q 007863          365 SLLK---DEFPDVRLNIISKLDQVNQVIGIDL--L----SQSLLPAIVELA-------------EDRHWRVRLAIIEYIP  422 (587)
Q Consensus       365 ~~l~---d~~~~vr~~a~~~l~~i~~~~~~~~--~----~~~~~~~l~~~~-------------~~~~~~vr~~~~~~l~  422 (587)
                      ....   +.+. .+..+..+++.++..++...  +    .+.++..+...+             ...+..+...++..++
T Consensus       569 ~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  647 (888)
T d1qbkb_         569 QKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS  647 (888)
T ss_dssp             HHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred             HHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            4432   3332 33455666776666655321  1    111122221111             1235566777788888


Q ss_pred             HHHHhhChhhH--H--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCCccHHHHHHH
Q 007863          423 LLASQLGVGFF--D--DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNPHYLYRMTIL  496 (587)
Q Consensus       423 ~l~~~~~~~~~--~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~~~~~r~~a~  496 (587)
                      .+.+.++....  .  ..+++.+...++|.++.||..|...++.++..++...  +.+.++|.+.+.+.++++.++..++
T Consensus       648 ~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~  727 (888)
T d1qbkb_         648 GLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT  727 (888)
T ss_dssp             HHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            88887765431  1  2378888999999999999999999999998877653  4577888888889888999999999


Q ss_pred             HHHHHhhcccChH--HHHHhHHHHHHhhcCCCC--ccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHH-hcCCCCccH
Q 007863          497 QAISLLAPVMGSE--ITCSQLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVE-LSEDPDVDV  569 (587)
Q Consensus       497 ~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~-l~~d~~~~V  569 (587)
                      +++|.++...|.+  .+.+.+++.+...+++++  ..++.+++.++|.++...+..  ++.+.+++.+.. +..-.|.+-
T Consensus       728 ~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~e  807 (888)
T d1qbkb_         728 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEE  807 (888)
T ss_dssp             HHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHH
Confidence            9999999887764  466788999999988764  459999999999998765543  334555555444 333234455


Q ss_pred             HHHHHHHHHHHHH
Q 007863          570 RFFATQALQSKDQ  582 (587)
Q Consensus       570 r~~a~~al~~l~~  582 (587)
                      +..|..++-.+.+
T Consensus       808 k~~~~~g~~~~i~  820 (888)
T d1qbkb_         808 KDSAFRGICTMIS  820 (888)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6e-23  Score=220.59  Aligned_cols=574  Identities=14%  Similarity=0.139  Sum_probs=358.4

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccC--CchHHHHHHHHHhcccccCcCCc--chHhhh
Q 007863           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENND--DDDEVLLAMAEELGVFIPYVGGL--EYANVL   87 (587)
Q Consensus        12 ~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~--~~~~v~~~~~~~l~~~~~~~~~~--~~~~~l   87 (587)
                      ..+++.+.++++.+|..+...++.++....|+..|++++|.|.+...  +...++..+..+++.+++..+..  .....+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~  177 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS  177 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45678889999999999999999999887787789999999877543  34467777778887776544421  112222


Q ss_pred             hhHH----Hhhh-cCchhHHHHHHHHHHHHHHhhcChh----hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH
Q 007863           88 LPPL----ETLC-TVEETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE  158 (587)
Q Consensus        88 ~~~l----~~l~-~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~  158 (587)
                      .+++    ..+. .+.+..+|..|+.++..+...+...    .....+++.+.+...++++.+|..++..+..+.....+
T Consensus       178 ~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  257 (861)
T d2bpta1         178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYT  257 (861)
T ss_dssp             HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2222    2222 3567899999999999988765432    23455677777777787888888877766655443322


Q ss_pred             ----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-------------------h------------------
Q 007863          159 ----ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-------------------A------------------  197 (587)
Q Consensus       159 ----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-------------------~------------------  197 (587)
                          ...+.+..++.....+.++.+|..+.+.+..++.....                   .                  
T Consensus       258 ~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~  337 (861)
T d2bpta1         258 FMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQN  337 (861)
T ss_dssp             GCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                12233444555666777888888887777666543210                   0                  


Q ss_pred             ---------------------------hhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh---hhhhchHHHHH
Q 007863          198 ---------------------------HLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---DCVAHILPVIV  247 (587)
Q Consensus       198 ---------------------------~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~  247 (587)
                                                 ...+.+.+.+.....++++..|..+...++.+.......   .+.+.+++.+.
T Consensus       338 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~  417 (861)
T d2bpta1         338 EDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL  417 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence                                       111222233333334444455555555555554443331   22344555666


Q ss_pred             HhcCCCchHHHHHHHHHHHHHHHHhCCCCccc----chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH------HHH
Q 007863          248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRS----DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE------LAI  317 (587)
Q Consensus       248 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~----~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~------~~~  317 (587)
                      ..+.|+++.||..++.+++.++..++......    .+++.+.....+ ++.++..++.++..+...+...      ...
T Consensus       418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  496 (861)
T d2bpta1         418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFY  496 (861)
T ss_dssp             HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred             HHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHH
Confidence            66666666666666666666665554322211    223333333333 3445555555555555443321      111


Q ss_pred             HhHHHHHhHhc--CCCcHHHHHHHHHHHHhhhhhhchHH--HHHhHHH----HHHHhcCCCC-----------hHHHHHH
Q 007863          318 QHILPCVKELS--SDSSQHVRSALATVIMGMAPILGKDA--TIEQLLP----IFLSLLKDEF-----------PDVRLNI  378 (587)
Q Consensus       318 ~~~~~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~----~l~~~l~d~~-----------~~vr~~a  378 (587)
                      ..++..+....  .+.+..+|..+..++..+....+...  +...+.+    .+...+....           ..++..+
T Consensus       497 ~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~  576 (861)
T d2bpta1         497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence            22223332222  34456677777777777766554321  2222233    2333222211           2344445


Q ss_pred             HHHhHHhhhhhchh--hHhhhhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHcCCCchHHH
Q 007863          379 ISKLDQVNQVIGID--LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLKDKVYSIR  453 (587)
Q Consensus       379 ~~~l~~i~~~~~~~--~~~~~~~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr  453 (587)
                      ...+..+....+..  .+.+.+++.+...+.+ +++.+|..++..++.++..+|.++  +.+.++|.+...+.+.++.||
T Consensus       577 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~  656 (861)
T d2bpta1         577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS  656 (861)
T ss_dssp             HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHH
Confidence            55555555444322  2334566666666654 567899999999999998887653  456789999999999999999


Q ss_pred             HHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcCC--ccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCC
Q 007863          454 DAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINNP--HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV  527 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~  527 (587)
                      ..|+..++.+++..+...  +.+.+++.+.+.+.++  +..+|..++.+++.++..+|..  .+.+.+++.+.+.++...
T Consensus       657 ~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~  736 (861)
T d2bpta1         657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP  736 (861)
T ss_dssp             HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC
Confidence            999999999999887653  4567888888887765  4578999999999999887764  467888888888766543


Q ss_pred             c-----------cHHHHHHHHHHHHHhhhch--H---HHHHhHHHHHHHhcCCC----CccHHHHHHHHHHHHHHHhhc
Q 007863          528 P-----------NIKFNVAKVLQSLIPIVDQ--S---VVEKSIRPCLVELSEDP----DVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       528 ~-----------~vR~~a~~~l~~l~~~~~~--~---~~~~~i~~~l~~l~~d~----~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      .           .+|..++.++..+...+..  +   ++...+++.+.....|+    +..++..+..+++.+++.+|+
T Consensus       737 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~  815 (861)
T d2bpta1         737 ENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD  815 (861)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcc
Confidence            2           4788899998888765432  1   33455666666666553    567888999999999988875

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5.3e-23  Score=220.96  Aligned_cols=574  Identities=13%  Similarity=0.120  Sum_probs=382.4

Q ss_pred             cHHHHHH-HhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCcCC--------
Q 007863           10 PIAVLID-ELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYVGG--------   80 (587)
Q Consensus        10 ~~~~l~~-~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~~~--------   80 (587)
                      .+..++. .+.|+|+++|..|.+.|..+... .+......+...+.+ .+.+.++|..++-.+.+....-..        
T Consensus         5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~-~~~~~~~~l~~il~~-~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~   82 (861)
T d2bpta1           5 EFAQLLENSILSPDQNIRLTSETQLKKLSND-NFLQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKDSVKTQQFAQ   82 (861)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhhcccchhhhhHHh
Confidence            4555554 47899999999999999877543 222222333333332 123467888888777665432111        


Q ss_pred             -------cchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCC-CcchhhHHhhhhhh
Q 007863           81 -------LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEW-FTARVSSCGLFHVA  152 (587)
Q Consensus        81 -------~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~-~~~r~~a~~l~~~~  152 (587)
                             ++....+...+.+.+.++++.+|..+..+++.+++...++.-++.++|.+.+...++. ...|..+..+++.+
T Consensus        83 ~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i  162 (861)
T d2bpta1          83 RWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYM  162 (861)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             hhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                   1222333344445557889999999999999999875554445678888877776653 45677777777776


Q ss_pred             ccCCCH------HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHhcccCchhHHH
Q 007863          153 YPSAPE------ALKTELRTIYRQLC--QDDMPMVRRSAATNLGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRL  220 (587)
Q Consensus       153 ~~~~~~------~~~~~l~~~l~~l~--~~~~~~vR~~a~~~l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~  220 (587)
                      ++..+.      .....++..+...+  .+.+..+|..+..+++.+...++.    ....+.+++.+...++++++.+|.
T Consensus       163 ~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  242 (861)
T d2bpta1         163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQA  242 (861)
T ss_dssp             HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHH
Confidence            554432      12233333333332  456789999999999988766543    234566778888889999999999


Q ss_pred             HHHHHHHHHhcccChh--hhh-hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhC----------CCC--c-------c
Q 007863          221 LAVEGCGALGKLLEPQ--DCV-AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG----------PEP--T-------R  278 (587)
Q Consensus       221 ~a~~~l~~l~~~~~~~--~~~-~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~----------~~~--~-------~  278 (587)
                      .+..++..+....++.  ... ..+.........+.++.+|..+.+.+..++....          ...  .       .
T Consensus       243 ~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  322 (861)
T d2bpta1         243 AAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI  322 (861)
T ss_dssp             HHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9999999998876542  122 2233445566678899999999988887765321          100  0       1


Q ss_pred             cchHHHHHHhcC-------CChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc
Q 007863          279 SDVVPAYVRLLR-------DNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG  351 (587)
Q Consensus       279 ~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~  351 (587)
                      ..++|.+...+.       +.++.+|..+..++..+....+.+. .+.+.+.+.....+.+|..|.+++.+++.+....+
T Consensus       323 ~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~  401 (861)
T d2bpta1         323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD  401 (861)
T ss_dssp             HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcc
Confidence            124444444442       3456788888888988888777653 35667777778888899999999999988887665


Q ss_pred             hH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhh----HhhhhH-------------------------
Q 007863          352 KD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLL-------------------------  399 (587)
Q Consensus       352 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~----~~~~~~-------------------------  399 (587)
                      ..   .+.+.++|.+...+.|+++.||..++.+++.++..++...    ..+.++                         
T Consensus       402 ~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~  481 (861)
T d2bpta1         402 KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLV  481 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHH
Confidence            33   3456788888889999999999999999888876654210    011111                         


Q ss_pred             -------------------HHHHHHh--cCCCcHHHHHHHHHHHHHHHhhChhhH--HHHHHHHH----HHHcCCC----
Q 007863          400 -------------------PAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALC----MQWLKDK----  448 (587)
Q Consensus       400 -------------------~~l~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l----~~~l~d~----  448 (587)
                                         ..+....  .+.++.+|..+..++..+....+....  ...+.+.+    ...+...    
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  561 (861)
T d2bpta1         482 EQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL  561 (861)
T ss_dssp             HHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred             HHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                               1111111  234456777777777777665554321  12223322    2222211    


Q ss_pred             -------chHHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhhhcC-CccHHHHHHHHHHHHhhcccChH--HHHHhHH
Q 007863          449 -------VYSIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEMINN-PHYLYRMTILQAISLLAPVMGSE--ITCSQLL  516 (587)
Q Consensus       449 -------~~~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l  516 (587)
                             ...++..+...++.+....+...  +.+.+++.+.+.+.+ ++..+|..++.+++.++..+|.+  .+.+.++
T Consensus       562 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~  641 (861)
T d2bpta1         562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFS  641 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence                   12455666666777766655442  335566666666544 45678999999999999887764  4678899


Q ss_pred             HHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHHhhc
Q 007863          517 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       517 ~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~--~~~Vr~~a~~al~~l~~~~~~  586 (587)
                      |.+...+.|.++.+|..++.+++.++...+..  ++...+++.|.+.+.++  ++++|..+..+++.++..+|.
T Consensus       642 p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~  715 (861)
T d2bpta1         642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             HHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             hHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998877653  56677888888866554  568999999999999988774

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-23  Score=232.51  Aligned_cols=571  Identities=14%  Similarity=0.193  Sum_probs=413.3

Q ss_pred             HHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccc-ccCCchHHHHHHHHHhcccccCcC----Ccc---
Q 007863           11 IAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSE-NNDDDDEVLLAMAEELGVFIPYVG----GLE---   82 (587)
Q Consensus        11 ~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~-~~~~~~~v~~~~~~~l~~~~~~~~----~~~---   82 (587)
                      ++.++..|.++++++|..|+++++.++...+++ ....+++.|.. ..+++.++|...+.++..+...++    +..   
T Consensus        47 ~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~-~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~  125 (1207)
T d1u6gc_          47 VKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY-QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA  125 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH-HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh-hHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHH
Confidence            778889999999999999999999998777654 44566766655 446666777666666654433221    111   


Q ss_pred             -hHhhhhhHHHh-hhcCchhHHHHHHHHHHHHHHhhcChh--hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCH
Q 007863           83 -YANVLLPPLET-LCTVEETCVRDKAVESLCRIGSQMREQ--DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPE  158 (587)
Q Consensus        83 -~~~~l~~~l~~-l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~  158 (587)
                       ..+.+++.+.. .....++.+|..++..+..+...++..  .....+++.+.....++...+|..|+..++.+....++
T Consensus       126 ~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~  205 (1207)
T d1u6gc_         126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN  205 (1207)
T ss_dssp             HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH
Confidence             22334444433 334668899999999999999887642  22344666666667777888999999999888888776


Q ss_pred             HHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh
Q 007863          159 ALKTELRT-IYRQLCQDDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP  235 (587)
Q Consensus       159 ~~~~~l~~-~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~  235 (587)
                      .....+++ ++..+..+.+..+|..++++++.++...+.  ..+.+.++|.+...++++++.+|..+..++..+....+.
T Consensus       206 ~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~  285 (1207)
T d1u6gc_         206 IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  285 (1207)
T ss_dssp             --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChh
Confidence            54444444 334455677778888999999999987765  245577899999999999999999999999998877654


Q ss_pred             h--hhhhchHHHHHH-------------------------------------hcCCCchHHHHHHHHHHHHHHHHhCCCC
Q 007863          236 Q--DCVAHILPVIVN-------------------------------------FSQDKSWRVRYMVANQLYELCEAVGPEP  276 (587)
Q Consensus       236 ~--~~~~~l~~~l~~-------------------------------------~~~d~~~~vR~~a~~~l~~l~~~~~~~~  276 (587)
                      +  .+...+++.+..                                     ...|.+|++|..++++++.++...+...
T Consensus       286 ~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l  365 (1207)
T d1u6gc_         286 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEML  365 (1207)
T ss_dssp             CCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTH
T ss_pred             hhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            2  122223222221                                     1245689999999999999887655421


Q ss_pred             --cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---------------------HHHHhHHHHHhHhcCCCcH
Q 007863          277 --TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---------------------LAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       277 --~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---------------------~~~~~~~~~l~~~~~d~~~  333 (587)
                        ....+.|.+...+.|.++.||..+..++..+....+..                     ...+.+++.+.+.+.+.+.
T Consensus       366 ~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~  445 (1207)
T d1u6gc_         366 PEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSV  445 (1207)
T ss_dssp             HHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCch
Confidence              23468899999999999999999999999987754311                     1223466777788899999


Q ss_pred             HHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCC--ChHHHHHHHHHhHHhhhhhchhh---HhhhhHHHHHHHh
Q 007863          334 HVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELA  406 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~i~~~~~~~~---~~~~~~~~l~~~~  406 (587)
                      .+|..+...+..+....+.  ..+...+++.+...+.+.  ...+|..++..+..+....+.+.   +...+.|.+...+
T Consensus       446 ~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~  525 (1207)
T d1u6gc_         446 KTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACV  525 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHH
Confidence            9999999999998876642  234566777787777765  45688889999988887665443   3456778888888


Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhCh---------hhHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHhChhh--hh
Q 007863          407 EDRHWRVRLAIIEYIPLLASQLGV---------GFFDDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDW--AM  473 (587)
Q Consensus       407 ~~~~~~vr~~~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~  473 (587)
                      .+++++++..++..++.+...+++         ..+...+.+.+...+.  +.+.++|..++.+++.+....|...  ..
T Consensus       526 ~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~  605 (1207)
T d1u6gc_         526 GDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDL  605 (1207)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            999999999999999888876642         1223445565665554  5678999999999999998877542  23


Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccC---hHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMG---SEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--  548 (587)
                      ..+++.+.+.+.++  ..|..++.++..++....   ...+...+++.+...+.+.+..+|..++.++..+....+..  
T Consensus       606 ~~~l~~l~~~l~~~--~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~  683 (1207)
T d1u6gc_         606 PNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLT  683 (1207)
T ss_dssp             HHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHhcch--hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccch
Confidence            55666666666543  478888898888876432   23467788899999999999999999999999998876543  


Q ss_pred             -HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHHHh
Q 007863          549 -VVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       549 -~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~~~  584 (587)
                       ...+.+++.+..+++|.+..++..+..++..+.+..
T Consensus       684 ~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~  720 (1207)
T d1u6gc_         684 AAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY  720 (1207)
T ss_dssp             HHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhc
Confidence             444567777778889999999999999988876543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-20  Score=202.11  Aligned_cols=570  Identities=15%  Similarity=0.145  Sum_probs=390.1

Q ss_pred             HHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhcccccccc---CCchHHHHHHHHHhcccccCcCCc---chHh
Q 007863           12 AVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENN---DDDDEVLLAMAEELGVFIPYVGGL---EYAN   85 (587)
Q Consensus        12 ~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~---~~~~~v~~~~~~~l~~~~~~~~~~---~~~~   85 (587)
                      ..+++.+.+++ ..|..++..++.++....|...|++++|.+.+..   +....++..+..+++.+++..+..   .+..
T Consensus        93 ~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~  171 (876)
T d1qgra_          93 NYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN  171 (876)
T ss_dssp             HHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHH
T ss_pred             HHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence            45667777765 4666788888888887667677999999987743   334567777778887765543322   2445


Q ss_pred             hhhhHHHhhhc--CchhHHHHHHHHHHHHHHhhcChh----hHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHH
Q 007863           86 VLLPPLETLCT--VEETCVRDKAVESLCRIGSQMREQ----DVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEA  159 (587)
Q Consensus        86 ~l~~~l~~l~~--~~~~~vr~~a~~~l~~l~~~~~~~----~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~  159 (587)
                      .+++.+.+.+.  +++..+|..|+.++..........    .....+++.+.....++++.++..++..+..+.....+.
T Consensus       172 ~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~  251 (876)
T d1qgra_         172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            56666655543  456789999999998887665432    334456777777777778888888888776665544332


Q ss_pred             ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh-----------------------hhhHHHHHHHHHHhcc
Q 007863          160 ----LKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA-----------------------AHLKSEIMSIFEELTQ  212 (587)
Q Consensus       160 ----~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~-----------------------~~~~~~i~~~l~~l~~  212 (587)
                          ..+.+.+++.....+.+..++..+.+.+..++.....                       ....+.++|.+.....
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  331 (876)
T d1qgra_         252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence                2334666777778888899999998888877654221                       1233455566555443


Q ss_pred             -------cCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---CcccchH
Q 007863          213 -------DDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVV  282 (587)
Q Consensus       213 -------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~  282 (587)
                             ++...+|..+..++..+....+.. ..+.+++.+.+.+.+.+|..|.+++..++.+.......   .....++
T Consensus       332 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~  410 (876)
T d1qgra_         332 KQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM  410 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred             hcccccccccchHHHHHHHHHHHHHHHhhhh-hhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence                   233468999999999988876653 56778899999999999999999999888765433221   1123578


Q ss_pred             HHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH----HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch------
Q 007863          283 PAYVRLLRDNEAEVRIAAAGKVTKICRILNPE----LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK------  352 (587)
Q Consensus       283 ~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------  352 (587)
                      +.+...+.|+++.||.+++.+++.+++..+..    .+...+++.+...+++ ++.++..++.++..+......      
T Consensus       411 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~  489 (876)
T d1qgra_         411 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVAD  489 (876)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999876543    3345667777776654 788999999888887654311      


Q ss_pred             ----------HHHHHhHHHHHHHhcCCC---ChHHHHHHHHHhHHhhhhhchh------hHhhhhHHHHHHHhcCC----
Q 007863          353 ----------DATIEQLLPIFLSLLKDE---FPDVRLNIISKLDQVNQVIGID------LLSQSLLPAIVELAEDR----  409 (587)
Q Consensus       353 ----------~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~i~~~~~~~------~~~~~~~~~l~~~~~~~----  409 (587)
                                ..+.+.+++.+...+.+.   ...++..+...+..+......+      .+...+++.+...+...    
T Consensus       490 ~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  569 (876)
T d1qgra_         490 DQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQ  569 (876)
T ss_dssp             SCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCC
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence                      123345666677666543   4678888888888777654432      12233444444443321    


Q ss_pred             Cc-------HHHHHHHHHHHHHHHhhChhhH---HHHHHHHHHHHcC--CCchHHHHHHHHHHHHHHHHhChhh--hhhc
Q 007863          410 HW-------RVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLK--DKVYSIRDAAANNVKRLAEEFGPDW--AMQH  475 (587)
Q Consensus       410 ~~-------~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~  475 (587)
                      ..       +.+..+...+..+....+.+..   .+.+++.+...+.  +++..+++.++.+++.++..+|..+  +.+.
T Consensus       570 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~  649 (876)
T d1qgra_         570 STSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA  649 (876)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHH
Confidence            11       2233344445555554554432   3567777777765  3567899999999999999888764  4577


Q ss_pred             hHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCC--CccHHHHHHHHHHHHHhhhchH--
Q 007863          476 IVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQS--  548 (587)
Q Consensus       476 ~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~--  548 (587)
                      ++|.+...+.+. ++.+|..++..++.+....+..  .+...+++.+.+.++++  ++.+|..++.+++.++..++..  
T Consensus       650 ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~  729 (876)
T d1qgra_         650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFK  729 (876)
T ss_dssp             HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhH
Confidence            888888877655 4679999999999888766543  46788899999998876  4689999999999999887763  


Q ss_pred             HHHHhHHHHHHHhcC---CCCc--------cHHHHHHHHHHHHHHHh
Q 007863          549 VVEKSIRPCLVELSE---DPDV--------DVRFFATQALQSKDQVM  584 (587)
Q Consensus       549 ~~~~~i~~~l~~l~~---d~~~--------~Vr~~a~~al~~l~~~~  584 (587)
                      .+.+.++|.+.+...   |++.        .+|..+..++..+...+
T Consensus       730 ~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~  776 (876)
T d1qgra_         730 KYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGL  776 (876)
T ss_dssp             GGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556777888877533   2221        24666777776665544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-20  Score=201.20  Aligned_cols=523  Identities=13%  Similarity=0.097  Sum_probs=362.8

Q ss_pred             HHHHHHHHHhcccccCcCCcchHhhhhhHHHhhhcCc--hhHHHHHHHHHHHHHHhhcChhhHh---hhhHHHHHHhhcC
Q 007863           62 EVLLAMAEELGVFIPYVGGLEYANVLLPPLETLCTVE--ETCVRDKAVESLCRIGSQMREQDVV---EHFIPLVKRLAAG  136 (587)
Q Consensus        62 ~v~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~---~~ll~~~~~l~~~  136 (587)
                      .++..++.+++.++..--....++.+++.|.+.+.++  ...+|..++.++..+++.+.++...   ..+++.+.+...+
T Consensus       104 ~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~  183 (876)
T d1qgra_         104 YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRK  183 (876)
T ss_dssp             SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcC
Confidence            3445566676666543111234567888877766544  4688999999999999988765543   3455555555543


Q ss_pred             C--CCcchhhHHhhhhhhccCCCH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHH
Q 007863          137 E--WFTARVSSCGLFHVAYPSAPE-----ALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEA---AHLKSEIMSI  206 (587)
Q Consensus       137 ~--~~~~r~~a~~l~~~~~~~~~~-----~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~  206 (587)
                      +  ...++..++..+.........     .....+++.+....+++++.+|..+++++..++...+.   +...+.+.+.
T Consensus       184 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~  263 (876)
T d1qgra_         184 EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAI  263 (876)
T ss_dssp             TCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHH
T ss_pred             cCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3  345677777766555544332     35567888899999999999999999999999987754   1223445666


Q ss_pred             HHHhcccCchhHHHHHHHHHHHHhcccCh-----------------------hhhhhchHHHHHHhcC-------CCchH
Q 007863          207 FEELTQDDQDSVRLLAVEGCGALGKLLEP-----------------------QDCVAHILPVIVNFSQ-------DKSWR  256 (587)
Q Consensus       207 l~~l~~d~~~~vr~~a~~~l~~l~~~~~~-----------------------~~~~~~l~~~l~~~~~-------d~~~~  256 (587)
                      +.....++.+.++..+...+..++.....                       ....+.+.|.+.....       +.+|.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  343 (876)
T d1qgra_         264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN  343 (876)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCC
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccch
Confidence            67777788888888888877776542110                       1123345555555432       35678


Q ss_pred             HHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHH---HHHHhHHHHHhHhcCCCcH
Q 007863          257 VRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPE---LAIQHILPCVKELSSDSSQ  333 (587)
Q Consensus       257 vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~  333 (587)
                      +|..+..++..++...+... .+.+++.+.+.+.+.+|..|.+++..++.+.......   .+...+++.+...+.|+++
T Consensus       344 ~~~~a~~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~  422 (876)
T d1qgra_         344 PCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV  422 (876)
T ss_dssp             HHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCcc
Confidence            99999999999998876543 3557888888999999999999999999887765544   4456788888999999999


Q ss_pred             HHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch----------------hh
Q 007863          334 HVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------------DL  393 (587)
Q Consensus       334 ~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~----------------~~  393 (587)
                      .||.+++.+++.+++..+.    ..+.+.+++.+...+.+ ++.++..++.++..+......                ..
T Consensus       423 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~  501 (876)
T d1qgra_         423 VVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS  501 (876)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT
T ss_pred             HHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999999999877653    23455677777777765 689999999888887654321                12


Q ss_pred             HhhhhHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHcCCC------c-----hHHH
Q 007863          394 LSQSLLPAIVELAED---RHWRVRLAIIEYIPLLASQLGVGF------FDDKLGALCMQWLKDK------V-----YSIR  453 (587)
Q Consensus       394 ~~~~~~~~l~~~~~~---~~~~vr~~~~~~l~~l~~~~~~~~------~~~~l~~~l~~~l~d~------~-----~~vr  453 (587)
                      +.+.+++.+...+.+   .+..+|..+++.+..+........      +...+++.+...+...      .     ...+
T Consensus       502 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  581 (876)
T d1qgra_         502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQ  581 (876)
T ss_dssp             THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHH
Confidence            234566666666654   356788888888877776543321      1233344444433221      1     1233


Q ss_pred             HHHHHHHHHHHHHhChhh---hhhchHHHHHhhhc--CCccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCC
Q 007863          454 DAAANNVKRLAEEFGPDW---AMQHIVPQVLEMIN--NPHYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDR  526 (587)
Q Consensus       454 ~~a~~~l~~l~~~~~~~~---~~~~~~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~  526 (587)
                      ...+..+..+....+...   +.+.+++.+...+.  +++..++..++.+++.+....+..  .+.+.++|.+...+++.
T Consensus       582 ~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~  661 (876)
T d1qgra_         582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY  661 (876)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCC
Confidence            444455555655556543   23556777766654  346778999999999998877654  46788999999988765


Q ss_pred             -CccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCC--CccHHHHHHHHHHHHHHHhhc
Q 007863          527 -VPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDP--DVDVRFFATQALQSKDQVMMS  586 (587)
Q Consensus       527 -~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~--~~~Vr~~a~~al~~l~~~~~~  586 (587)
                       .+++|..++..++.+....+..  ++...+++.+.+.+.++  ++++|..+..+++.++..+|.
T Consensus       662 ~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~  726 (876)
T d1qgra_         662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG  726 (876)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG
T ss_pred             CcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhH
Confidence             4779999999999998766553  56678888888877665  468999999999999988874

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.7e-19  Score=173.29  Aligned_cols=390  Identities=15%  Similarity=0.158  Sum_probs=280.3

Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccc--CchhHHHHHHHHHHHHhcccCh------
Q 007863          164 LRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQD--DQDSVRLLAVEGCGALGKLLEP------  235 (587)
Q Consensus       164 l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d--~~~~vr~~a~~~l~~l~~~~~~------  235 (587)
                      +++++..+ .++|..+|..|.+.|..+...-. +.+    +..+...+.+  .+..+|..|+..+.+.......      
T Consensus         2 l~~il~~~-~s~d~~~r~~A~~~L~~~~~~~~-~~~----~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~   75 (458)
T d1ibrb_           2 LITILEKT-VSPDRLELEAAQKFLERAAVENL-PTF----LVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   75 (458)
T ss_dssp             HHHHHHHT-TCSCHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHHH-hCcCHHHHHHHHHHHHHHHhcCc-hHH----HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence            44555444 46889999999999999876422 123    3333333333  3467999988888766544321      


Q ss_pred             --------hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC--ChHHHHHHHHHhHH
Q 007863          236 --------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD--NEAEVRIAAAGKVT  305 (587)
Q Consensus       236 --------~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~  305 (587)
                              +.....+.+.+.+.+.+.+..+| .++.++..++....+...++.+++.+.+.+.+  .++.++..++.+++
T Consensus        76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~  154 (458)
T d1ibrb_          76 QQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG  154 (458)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             hhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence                    12344566777777777766544 56677777776655444577889988887754  45788999999999


Q ss_pred             HHHHhhCHH---HHHHhHHHHHhHhcC--CCcHHHHHHHHHHHHhhhhhhch----HHHHHhHHHHHHHhcCCCChHHHH
Q 007863          306 KICRILNPE---LAIQHILPCVKELSS--DSSQHVRSALATVIMGMAPILGK----DATIEQLLPIFLSLLKDEFPDVRL  376 (587)
Q Consensus       306 ~l~~~~~~~---~~~~~~~~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~  376 (587)
                      .+.......   ...+.+++.+...+.  +.+..+|..+++++..+......    ......+.+.+...+.++++++|.
T Consensus       155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  234 (458)
T d1ibrb_         155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRV  234 (458)
T ss_dssp             HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHH
Confidence            998876654   234567777777765  45789999999999988765432    334456778888899999999999


Q ss_pred             HHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-----------------------h
Q 007863          377 NIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-----------------------V  430 (587)
Q Consensus       377 ~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~-----------------------~  430 (587)
                      .++.++..+++..+..   .+.+.+.+.+.....+.+..++..+++.+..++....                       .
T Consensus       235 ~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (458)
T d1ibrb_         235 AALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYA  314 (458)
T ss_dssp             HHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHH
Confidence            9999999998766532   2223345555666788889999999988888764321                       0


Q ss_pred             hhHHHHHHHHHHHHcC-------CCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhh
Q 007863          431 GFFDDKLGALCMQWLK-------DKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLA  503 (587)
Q Consensus       431 ~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~  503 (587)
                      ....+.+.|.+...+.       |.++.+|..+..++..++..+|.+ +.+.++|.+.+.+.+++|.+|.+++.+++.++
T Consensus       315 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~  393 (458)
T d1ibrb_         315 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL  393 (458)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1123445666665542       456689999999999999988876 45778899999999999999999999999999


Q ss_pred             cccChH---HHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchHHHH-HhHHHHHHHh
Q 007863          504 PVMGSE---ITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVE-KSIRPCLVEL  561 (587)
Q Consensus       504 ~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~i~~~l~~l  561 (587)
                      .....+   .+...++|.+..+++|+++.||.+|++++++++..++..... ..+.|.+..+
T Consensus       394 ~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         394 EGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  455 (458)
T ss_dssp             SSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             HhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            765433   357889999999999999999999999999999887654322 2344444434

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.7e-18  Score=167.91  Aligned_cols=336  Identities=15%  Similarity=0.129  Sum_probs=205.9

Q ss_pred             CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccC--chhHHHHHHHHHHHHhccc
Q 007863          156 APEALKTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDD--QDSVRLLAVEGCGALGKLL  233 (587)
Q Consensus       156 ~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~--~~~vr~~a~~~l~~l~~~~  233 (587)
                      .+++.+..+.+.+...+.++++.+| .++..+..++........++.+++.+.+.+.++  ++.++..+..++..+....
T Consensus        82 l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~  160 (458)
T d1ibrb_          82 IDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI  160 (458)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc
Confidence            3455666677777777777765444 456677776665444445666777776666543  3567778888888777666


Q ss_pred             Chh---hhhhchHHHHHHhcCC--CchHHHHHHHHHHHHHHHHhCC----CCcccchHHHHHHhcCCChHHHHHHHHHhH
Q 007863          234 EPQ---DCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGP----EPTRSDVVPAYVRLLRDNEAEVRIAAAGKV  304 (587)
Q Consensus       234 ~~~---~~~~~l~~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  304 (587)
                      ...   .....+++.+.+.+.+  .+..+|..++.++..+......    ......+.+.+...++++++++|..++.++
T Consensus       161 ~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  240 (458)
T d1ibrb_         161 DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL  240 (458)
T ss_dssp             CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHH
Confidence            542   2344566666666653  4677888888888777643221    111224667777778888888888888888


Q ss_pred             HHHHHhhCHH--HH-HHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHH
Q 007863          305 TKICRILNPE--LA-IQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISK  381 (587)
Q Consensus       305 ~~l~~~~~~~--~~-~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  381 (587)
                      ..+....+..  .+ .+.+.+.+.....+.+..++..++..+..++......     .............+..       
T Consensus       241 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~-----~~~~~~~~~~~~~~~~-------  308 (458)
T d1ibrb_         241 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL-----AIEASEAAEQGRPPEH-------  308 (458)
T ss_dssp             HHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH-----HHHHCCTTCSSSCSSC-------
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH-----HHhhhhHHHhhhHHHH-------
Confidence            8887765432  11 1223344445566777888888888777765321100     0000000000000000       


Q ss_pred             hHHhhhhhchhhHhhhhHHHHHHHh-------cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHH
Q 007863          382 LDQVNQVIGIDLLSQSLLPAIVELA-------EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRD  454 (587)
Q Consensus       382 l~~i~~~~~~~~~~~~~~~~l~~~~-------~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  454 (587)
                          ..........+.+.|.+....       .+.+|.+|..+...+..++...+.+. .+.+.+.+.+.+++++|.+|.
T Consensus       309 ----~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~~i~~~l~s~~~~~r~  383 (458)
T d1ibrb_         309 ----TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRD  383 (458)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTCSSHHHHH
T ss_pred             ----HHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh-hhHHHHHHHHHhcCCCHHHHH
Confidence                000000111123334433332       35677788888888888887776553 567788888888888888888


Q ss_pred             HHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChH
Q 007863          455 AAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSE  509 (587)
Q Consensus       455 ~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  509 (587)
                      +|+.+++.++...+.+   .+...++|.+...++|++..+|.+|+++++.++..++..
T Consensus       384 aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~  441 (458)
T d1ibrb_         384 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA  441 (458)
T ss_dssp             HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            8888888887654332   256778888888888888888888888888887766543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.6e-17  Score=163.25  Aligned_cols=463  Identities=15%  Similarity=0.094  Sum_probs=289.0

Q ss_pred             hHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHH
Q 007863           83 YANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKT  162 (587)
Q Consensus        83 ~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~  162 (587)
                      .....+|.|.+++.+++..+|..|+.++..++..-..   ...   ++    .                         ..
T Consensus        14 ~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~---~~~---~~----~-------------------------~~   58 (529)
T d1jdha_          14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS---RHA---IM----R-------------------------SP   58 (529)
T ss_dssp             ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHH---HHH---HH----T-------------------------CH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHH---HHH---HH----H-------------------------hh
Confidence            3344578888888899999999999999998764211   110   00    0                         01


Q ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccCh---h
Q 007863          163 ELRTIYRQLCQ-DDMPMVRRSAATNLGKFAATVEA--AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEP---Q  236 (587)
Q Consensus       163 ~l~~~l~~l~~-~~~~~vR~~a~~~l~~l~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~---~  236 (587)
                      .+++.+..++. ..++.++..++.+|..++..-..  .-.....+|.+..+++++++.++..|+.+|..++...+.   .
T Consensus        59 ~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~  138 (529)
T d1jdha_          59 QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA  138 (529)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhH
Confidence            23344444443 34567777777777776542211  112223467777777777788888888888877655443   1


Q ss_pred             hhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcC-CChHHHHHHHHHhHHHHHHhhC
Q 007863          237 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLR-DNEAEVRIAAAGKVTKICRILN  312 (587)
Q Consensus       237 ~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~l~~~~~  312 (587)
                      ......+|.+..++++++..++..++.++..++..-..   .......++.+..++. .....++..++..+..++..-.
T Consensus       139 ~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~  218 (529)
T d1jdha_         139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS  218 (529)
T ss_dssp             HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT
T ss_pred             HHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc
Confidence            12345677788888888888888888888877632110   0111234566666653 3446788888888877754322


Q ss_pred             HH--HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhc
Q 007863          313 PE--LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  390 (587)
Q Consensus       313 ~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~  390 (587)
                      ..  ......++.+..++.+++..++..++.++..+.............++.+..++.+.++.++..++.++..++..-.
T Consensus       219 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~  298 (529)
T d1jdha_         219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY  298 (529)
T ss_dssp             HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred             ccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchh
Confidence            21  2223467778888888888888888888887765443332334567888888888889999999988888764311


Q ss_pred             hh---hHhhhhHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhChhh-H-----HHHHHHHHHHHcCCC-chHHHHHHHH
Q 007863          391 ID---LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF-F-----DDKLGALCMQWLKDK-VYSIRDAAAN  458 (587)
Q Consensus       391 ~~---~~~~~~~~~l~~~~--~~~~~~vr~~~~~~l~~l~~~~~~~~-~-----~~~l~~~l~~~l~d~-~~~vr~~a~~  458 (587)
                      ..   ......++.+...+  ..+++.++..++..+..++....... .     ....++.+..++.++ .+.++..++.
T Consensus       299 ~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~  378 (529)
T d1jdha_         299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG  378 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHH
Confidence            11   11234455555544  34566777778777776653322111 1     112355666777654 4567788888


Q ss_pred             HHHHHHHHhChh--hhhhchHHHHHhhhcCCc----------------------cHHHHHHHHHHHHhhcccChHHH--H
Q 007863          459 NVKRLAEEFGPD--WAMQHIVPQVLEMINNPH----------------------YLYRMTILQAISLLAPVMGSEIT--C  512 (587)
Q Consensus       459 ~l~~l~~~~~~~--~~~~~~~~~l~~~l~~~~----------------------~~~r~~a~~~l~~l~~~~~~~~~--~  512 (587)
                      ++..+...-...  ......+|.+.+++.+.+                      ..++..++.++..++........  .
T Consensus       379 ~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~  458 (529)
T d1jdha_         379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG  458 (529)
T ss_dssp             HHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            888776432211  122446666666654332                      23445555566665542211111  2


Q ss_pred             HhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHH
Q 007863          513 SQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSK  580 (587)
Q Consensus       513 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l  580 (587)
                      ...++.+..++.++++.+|..++.+|..+...-+..  ......++.|.+++.++++.||..|..+|..+
T Consensus       459 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            346788999999999999999999999987542222  22345788999999999999999999999876

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=6.3e-17  Score=158.58  Aligned_cols=373  Identities=12%  Similarity=0.109  Sum_probs=258.0

Q ss_pred             HHhcccCchhHHHHHHHHHHHHhcccCh----hhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCC---CCccc
Q 007863          208 EELTQDDQDSVRLLAVEGCGALGKLLEP----QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---EPTRS  279 (587)
Q Consensus       208 ~~l~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~  279 (587)
                      .+.++++++..+..|+..+..+...-..    ......++|.+.+++++ +++.+|..++.+|..++.....   .....
T Consensus        19 v~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~   98 (434)
T d1q1sc_          19 VKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG   98 (434)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhc
Confidence            3355556666666666666655432221    11234577778777754 4567888888888887632110   11123


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhHHHHHhHhcCCCc-----HHHHHHHHHHHHhhhhhh-
Q 007863          280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSDSS-----QHVRSALATVIMGMAPIL-  350 (587)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~-----~~vr~~a~~~l~~l~~~~-  350 (587)
                      ..+|.+.+++++++.+++..|+.+|+.++..-..  . ......++.+..++...+     ......++..+..++... 
T Consensus        99 ~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  178 (434)
T d1q1sc_          99 GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN  178 (434)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCT
T ss_pred             cchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhccc
Confidence            5788888889888899999999999888753211  1 122345566666654432     223334445555554432 


Q ss_pred             --chHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 007863          351 --GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  425 (587)
Q Consensus       351 --~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~  425 (587)
                        ........++|.+..++.+.+++++..++.++..++..-...   .....++|.+.+++.++++.++..++..+..++
T Consensus       179 ~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~  258 (434)
T d1q1sc_         179 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV  258 (434)
T ss_dssp             TCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHH
Confidence              222345678899999999999999999999999987543211   123467899999999999999999999998876


Q ss_pred             HhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhcCCccHHHHHHHHHH
Q 007863          426 SQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMINNPHYLYRMTILQAI  499 (587)
Q Consensus       426 ~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l  499 (587)
                      ..-.   ...+...+++.+..++.+++.++|..++.+++.++.....   ......++|.+...+.++++.+|..++.++
T Consensus       259 ~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l  338 (434)
T d1q1sc_         259 TGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAI  338 (434)
T ss_dssp             TSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHH
Confidence            4211   1112233566788889999999999999999998753211   123466899999999999999999999999


Q ss_pred             HHhhcccChHH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhc----hHHHH-----HhHHHHHHHhcCCCC
Q 007863          500 SLLAPVMGSEI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSVVE-----KSIRPCLVELSEDPD  566 (587)
Q Consensus       500 ~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~----~~~~~-----~~i~~~l~~l~~d~~  566 (587)
                      .++......+.    ....+++.+..+++++++.++..+++++..+.....    .+.+.     ...++.|..+..+++
T Consensus       339 ~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n  418 (434)
T d1q1sc_         339 TNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN  418 (434)
T ss_dssp             HHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSS
T ss_pred             HHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCC
Confidence            99988766543    234468889999999999999999999998876432    11222     234677888999999


Q ss_pred             ccHHHHHHHHHHHH
Q 007863          567 VDVRFFATQALQSK  580 (587)
Q Consensus       567 ~~Vr~~a~~al~~l  580 (587)
                      ++|+..|.+.+.+.
T Consensus       419 ~~i~~~a~~il~~~  432 (434)
T d1q1sc_         419 ESVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888753

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.5e-15  Score=151.01  Aligned_cols=421  Identities=12%  Similarity=0.057  Sum_probs=289.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh-h--HHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh-
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH-L--KSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP-  235 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~-~--~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~-  235 (587)
                      ....+|.+..++++++..+|..++..++.++..-.... +  ...+++.+..++.+ +++.++..++.+|..++..-.. 
T Consensus        15 ~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            34557888899999999999999999999975432211 1  23467777777765 4678999999999998753321 


Q ss_pred             -hhhhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCC---CcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863          236 -QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       236 -~~~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                       .......+|.+..+++++++.++..|+.+|++++......   ......+|.+..++++++.+++..++.++..++..-
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence             2233457899999999999999999999999998753321   112357899999999999999999999999987532


Q ss_pred             CHH---HHHHhHHHHHhHhcC-CCcHHHHHHHHHHHHhhhhhhch--HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863          312 NPE---LAIQHILPCVKELSS-DSSQHVRSALATVIMGMAPILGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (587)
Q Consensus       312 ~~~---~~~~~~~~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  385 (587)
                      ...   ......++.+..++. .....++..++..+..++..-..  .......++.+..++.+.+..++..++.++..+
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l  254 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence            111   122335566666663 45678999998888887643321  223345678899999999999999999999888


Q ss_pred             hhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh--h-hHHHHHHHHHHHHc--CCCchHHHHHHHHHH
Q 007863          386 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G-FFDDKLGALCMQWL--KDKVYSIRDAAANNV  460 (587)
Q Consensus       386 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l--~d~~~~vr~~a~~~l  460 (587)
                      .............+|.+..++.+.+..++..++..+..++..-..  . ......++.+...+  ..+...++..++.++
T Consensus       255 s~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL  334 (529)
T d1jdha_         255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL  334 (529)
T ss_dssp             HTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHh
Confidence            755443333456889999999999999999999988877632111  0 11122344455544  345678899999999


Q ss_pred             HHHHHHhChh------hhhhchHHHHHhhhcCC-ccHHHHHHHHHHHHhhcccChH--HHHHhHHHHHHhhcCCCC----
Q 007863          461 KRLAEEFGPD------WAMQHIVPQVLEMINNP-HYLYRMTILQAISLLAPVMGSE--ITCSQLLPVVINASKDRV----  527 (587)
Q Consensus       461 ~~l~~~~~~~------~~~~~~~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~----  527 (587)
                      ..+.......      ......++.+..++.++ ++.++..++.++.+++..-...  ......++.+..++.+.+    
T Consensus       335 ~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~  414 (529)
T d1jdha_         335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ  414 (529)
T ss_dssp             HHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred             hcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHH
Confidence            8886432211      12345677788877655 4678888888998887643221  122345566666554322    


Q ss_pred             ------------------ccHHHHHHHHHHHHHhhhchH--HHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          528 ------------------PNIKFNVAKVLQSLIPIVDQS--VVEKSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       528 ------------------~~vR~~a~~~l~~l~~~~~~~--~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                                        ..++..++.++..+.......  ......++.|..++.++++++|..|..++..+.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  488 (529)
T d1jdha_         415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             -----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence                              345566667776665433221  112346788999888899999999999998764

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.7e-15  Score=148.13  Aligned_cols=374  Identities=10%  Similarity=0.084  Sum_probs=267.2

Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh---hhhh
Q 007863          168 YRQLCQDDMPMVRRSAATNLGKFAATVEAA---H-LKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP---QDCV  239 (587)
Q Consensus       168 l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~---~-~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~---~~~~  239 (587)
                      +...++++++..+..|+.++..+...-..+   . ....++|.+.+++++ +++.+|..++.+|..++..-+.   ....
T Consensus        18 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~   97 (434)
T d1q1sc_          18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD   97 (434)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh
Confidence            345678889999999999999886533321   1 223467888888865 4578999999999998765433   1234


Q ss_pred             hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCCh-----HHHHHHHHHhHHHHHHhh
Q 007863          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNE-----AEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~-----~~vr~~a~~~l~~l~~~~  311 (587)
                      ...+|.+..++.+++..++..++.+|++++..-..   .......++.+..++...+     ......+...+..++...
T Consensus        98 ~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (434)
T d1q1sc_          98 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  177 (434)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred             ccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcc
Confidence            56899999999999999999999999998742110   1112345667777665432     222334445555554432


Q ss_pred             CH---HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchH---HHHHhHHHHHHHhcCCCChHHHHHHHHHhHHh
Q 007863          312 NP---ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  385 (587)
Q Consensus       312 ~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i  385 (587)
                      ..   ......+++.+..++++.++.++..++.++..++......   .....++|.+..++++.++.++..++.++..+
T Consensus       178 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l  257 (434)
T d1q1sc_         178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  257 (434)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhH
Confidence            21   1334678899999999999999999999999887543211   12245788999999999999999999999988


Q ss_pred             hhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh--h-hHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 007863          386 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G-FFDDKLGALCMQWLKDKVYSIRDAAANN  459 (587)
Q Consensus       386 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~  459 (587)
                      +..-..   ......+++.+..++.+++..+|..++..+..++.....  . .....++|.++..+.++++.+|..|+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~  337 (434)
T d1q1sc_         258 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA  337 (434)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHH
Confidence            753221   122345677788889999999999999999888753211  1 1223467888999999999999999999


Q ss_pred             HHHHHHHhChhh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc---C-hHHHH-----HhHHHHHHhhcCCC
Q 007863          460 VKRLAEEFGPDW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM---G-SEITC-----SQLLPVVINASKDR  526 (587)
Q Consensus       460 l~~l~~~~~~~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~-~~~~~-----~~~l~~l~~~l~d~  526 (587)
                      ++.++.....+.    ....+++.+.+++.+++..++..++.++..+....   + .+.+.     ...++.+..+..++
T Consensus       338 l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~  417 (434)
T d1q1sc_         338 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE  417 (434)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCS
T ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCC
Confidence            999988765542    23567899999999999999999999998887532   2 22221     22456677777889


Q ss_pred             CccHHHHHHHHHHHH
Q 007863          527 VPNIKFNVAKVLQSL  541 (587)
Q Consensus       527 ~~~vR~~a~~~l~~l  541 (587)
                      ++++|..|.+.|...
T Consensus       418 n~~i~~~a~~il~~~  432 (434)
T d1q1sc_         418 NESVYKASLNLIEKY  432 (434)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999988653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3e-15  Score=149.29  Aligned_cols=374  Identities=10%  Similarity=0.088  Sum_probs=270.7

Q ss_pred             HHHHHhcccCchhHHHHHHHHHHHHhcccC--h--hhhhhchHHHHHHhcC-CCchHHHHHHHHHHHHHHHHhCC---CC
Q 007863          205 SIFEELTQDDQDSVRLLAVEGCGALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EP  276 (587)
Q Consensus       205 ~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~--~--~~~~~~l~~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~  276 (587)
                      +.+...+++++...+..++..+..+...-.  +  ......++|.+.++++ +.+..++..|+.+|..++.....   ..
T Consensus        79 ~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~  158 (503)
T d1wa5b_          79 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  158 (503)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            333445566666677777777766553211  1  1234557888888876 45778999999998887642110   11


Q ss_pred             cccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH--H-HHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhc--
Q 007863          277 TRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP--E-LAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILG--  351 (587)
Q Consensus       277 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--  351 (587)
                      ....++|.+..++.+++.+++..|+.+|+.++.....  . .....+++.+..++.+.+..++..++.++..++....  
T Consensus       159 ~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~  238 (503)
T d1wa5b_         159 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ  238 (503)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             HhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence            1235788999999888899999999999998763211  1 2234577888888999999999999999999876432  


Q ss_pred             -hHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 007863          352 -KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       352 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~  427 (587)
                       .......++|.+..++.+.+++++..++.++..++..-..   ......+++.+..++.++++.++..++..++.++..
T Consensus       239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~  318 (503)
T d1wa5b_         239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  318 (503)
T ss_dssp             CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHH
Confidence             2234567899999999999999999999999998753321   122346788899999999999999999999888753


Q ss_pred             hChh---hHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh----hhhhchHHHHHhhhcCCccHHHHHHHHHHH
Q 007863          428 LGVG---FFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD----WAMQHIVPQVLEMINNPHYLYRMTILQAIS  500 (587)
Q Consensus       428 ~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~  500 (587)
                      .+..   .....+++.+..++.++++.+|..++.+++.++.. ..+    .....++|.+...+.+++..+|..+++++.
T Consensus       319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~-~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~  397 (503)
T d1wa5b_         319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS  397 (503)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHH
Confidence            2211   11234678888999999999999999999998642 111    134678899999998899999999999999


Q ss_pred             HhhcccCh--HH----HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---------HHH-----HHhHHHHHHH
Q 007863          501 LLAPVMGS--EI----TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---------SVV-----EKSIRPCLVE  560 (587)
Q Consensus       501 ~l~~~~~~--~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---------~~~-----~~~i~~~l~~  560 (587)
                      ++......  +.    ....+++.+..+++..++.+...++.+|..+......         ..+     ....+..|..
T Consensus       398 nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~  477 (503)
T d1wa5b_         398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFN  477 (503)
T ss_dssp             HHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHG
T ss_pred             HHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHH
Confidence            99864332  11    2355778899999988999999999999888643211         111     1235667888


Q ss_pred             hcCCCCccHHHHHHHHHHH
Q 007863          561 LSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       561 l~~d~~~~Vr~~a~~al~~  579 (587)
                      +..+++.+|+..|.+.+..
T Consensus       478 Lq~~~~~~i~~~A~~il~~  496 (503)
T d1wa5b_         478 CQQNENDKIYEKAYKIIET  496 (503)
T ss_dssp             GGGCSCHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHH
Confidence            8889999999988887765

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2e-15  Score=137.82  Aligned_cols=254  Identities=19%  Similarity=0.121  Sum_probs=158.7

Q ss_pred             hHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHH
Q 007863          281 VVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLL  360 (587)
Q Consensus       281 l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  360 (587)
                      ..+.+.++++|+++.||..|+..|+.++.        +..++.+.++++|+++.||..++.+|+.+....+....  .+.
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~--~~~   89 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN--VFN   89 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH--HHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccc--hHH
Confidence            34556667777777777777777766632        33556667777777777777777777766533222111  111


Q ss_pred             HHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHH
Q 007863          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL  440 (587)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  440 (587)
                      ..+..+++|+++.||..++.+++.++..-..  ..+.+++.+.....|+++.+|..++..++....        +...+.
T Consensus        90 ~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~~  159 (276)
T d1oyza_          90 ILNNMALNDKSACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIPL  159 (276)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHccccch--hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHHH
Confidence            2233446677777777777777776643221  124566666677777777777777666544322        223455


Q ss_pred             HHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHH
Q 007863          441 CMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVI  520 (587)
Q Consensus       441 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~  520 (587)
                      +..++.+.++.+|..+...++....  +    .....+.+...+.++++.+|..++.+++.+..        ...+|.+.
T Consensus       160 l~~l~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L~  225 (276)
T d1oyza_         160 LINLLKDPNGDVRNWAAFAININKY--D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVLC  225 (276)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTC--C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHHH
T ss_pred             HHHhcccccchhhhhHHHHHHhhhc--c----ccccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHHH
Confidence            6666777777777777666654322  1    13345556666778888888888888776543        34556666


Q ss_pred             hhcCCCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhc-CCCCccHHHHHHHHHH
Q 007863          521 NASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELS-EDPDVDVRFFATQALQ  578 (587)
Q Consensus       521 ~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~-~d~~~~Vr~~a~~al~  578 (587)
                      ..+.|  +.||..++.+|+.+..        ...+|.|.+++ .+++.+||..|.++|+
T Consensus       226 ~~l~d--~~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         226 DELKK--NTVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHTS--SSCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHhCC--hHHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            66665  4588888888887743        24677777744 4457788888888764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.8e-15  Score=136.81  Aligned_cols=255  Identities=15%  Similarity=0.071  Sum_probs=192.4

Q ss_pred             hchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHh
Q 007863          240 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQH  319 (587)
Q Consensus       240 ~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  319 (587)
                      ..-.+.+.++++|+++.||..|+..|+.+.        .+..+|.+.++++|+++.||..|+.+|+.+......+   +.
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~   86 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DN   86 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HH
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cc
Confidence            445566788999999999999999998763        2467899999999999999999999998875433322   22


Q ss_pred             HHHH-HhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhh
Q 007863          320 ILPC-VKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  398 (587)
Q Consensus       320 ~~~~-l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~  398 (587)
                      ..+. +..+++|+++.||..++.+++.++..-+  ...+.+++.+...+.|.++.||..++.+++.+..        +..
T Consensus        87 ~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~  156 (276)
T d1oyza_          87 VFNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KAT  156 (276)
T ss_dssp             HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CC
T ss_pred             hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHH
Confidence            2333 3455789999999999999998875432  2235677888899999999999999888877653        356


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHH
Q 007863          399 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVP  478 (587)
Q Consensus       399 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~  478 (587)
                      ++.+..+..+.++.+|..+...++.....      .....+.+...+.+.++.+|..+..+++.+.        ....+|
T Consensus       157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--------~~~~~~  222 (276)
T d1oyza_         157 IPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLS  222 (276)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHTCC------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHH
T ss_pred             HHHHHHhcccccchhhhhHHHHHHhhhcc------ccccchhhhhhhhhhhhhhhhhhccccchhh--------hhhhHH
Confidence            77788888899999988877666543321      1335666778889999999999998887642        245678


Q ss_pred             HHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCC-CCccHHHHHHHHHH
Q 007863          479 QVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKD-RVPNIKFNVAKVLQ  539 (587)
Q Consensus       479 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~  539 (587)
                      .+.+.+.|++  +|..++.+++.++.        +..+|.+..++.+ .+..||..|+++|.
T Consensus       223 ~L~~~l~d~~--vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         223 VLCDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHhCChH--HHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            8888887654  78899999998864        3567777776665 57899999999874

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.5e-14  Score=142.56  Aligned_cols=376  Identities=11%  Similarity=0.094  Sum_probs=265.3

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHhccc-CchhHHHHHHHHHHHHhcccCh---hh
Q 007863          166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAA----HLKSEIMSIFEELTQD-DQDSVRLLAVEGCGALGKLLEP---QD  237 (587)
Q Consensus       166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~----~~~~~i~~~l~~l~~d-~~~~vr~~a~~~l~~l~~~~~~---~~  237 (587)
                      +-+...+.+++...+..++..+..+...-..+    -+...++|.+..+++. .++.++..|+.+|..++...+.   ..
T Consensus        79 ~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~  158 (503)
T d1wa5b_          79 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVV  158 (503)
T ss_dssp             HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            44445567777888877777777654321111    1223357777778764 4677899999999988764332   22


Q ss_pred             hhhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCH-
Q 007863          238 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNP-  313 (587)
Q Consensus       238 ~~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~-  313 (587)
                      ....++|.+..++.+++..++..++.+|++++.....   ......+++.+..++++.+..++..++.++..++....+ 
T Consensus       159 ~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~  238 (503)
T d1wa5b_         159 VDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ  238 (503)
T ss_dssp             HHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred             HhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence            2345788999999999999999999999998753110   111235788888999998889999999999999864322 


Q ss_pred             --HHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhch---HHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863          314 --ELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPILGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       314 --~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  388 (587)
                        ......++|.+..++.+.++.++..++.++..++.....   ......+++.+..++.+.++.++..++.+++.++..
T Consensus       239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~  318 (503)
T d1wa5b_         239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG  318 (503)
T ss_dssp             CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHH
Confidence              134467889999999999999999999999888754321   123345788899999999999999999999998854


Q ss_pred             hchh---hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 007863          389 IGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKR  462 (587)
Q Consensus       389 ~~~~---~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  462 (587)
                      -+..   .....++|.+..++.++++.+|..++..++.++..-.   .......+++.+...+.+.+..++..|+.++..
T Consensus       319 ~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~n  398 (503)
T d1wa5b_         319 NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN  398 (503)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHH
Confidence            3221   1223578888899999999999999999988764211   111224567888888889999999999999999


Q ss_pred             HHHHhCh--hh----hhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---------HHH-----HHhHHHHHHhh
Q 007863          463 LAEEFGP--DW----AMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---------EIT-----CSQLLPVVINA  522 (587)
Q Consensus       463 l~~~~~~--~~----~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~-----~~~~l~~l~~~  522 (587)
                      ++.....  +.    ....+++.+.+++...+..+...++.++..+......         ..+     ....+..+..+
T Consensus       399 l~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~L  478 (503)
T d1wa5b_         399 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC  478 (503)
T ss_dssp             HHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG
T ss_pred             HHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHH
Confidence            9875432  11    2356788899999888888888888888887642111         011     12234455556


Q ss_pred             cCCCCccHHHHHHHHHHHH
Q 007863          523 SKDRVPNIKFNVAKVLQSL  541 (587)
Q Consensus       523 l~d~~~~vR~~a~~~l~~l  541 (587)
                      ..+++..++..|.+.|...
T Consensus       479 q~~~~~~i~~~A~~il~~~  497 (503)
T d1wa5b_         479 QQNENDKIYEKAYKIIETY  497 (503)
T ss_dssp             GGCSCHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHH
Confidence            6677788887777766544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=5.5e-08  Score=104.14  Aligned_cols=527  Identities=9%  Similarity=0.018  Sum_probs=288.1

Q ss_pred             cHHHHHHHhcCccHHHHHHHhhcHHHHHHHhChhhhhhhhccccccccCCchHHHHHHHHHhcccccCc---------CC
Q 007863           10 PIAVLIDELKNDDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDDDEVLLAMAEELGVFIPYV---------GG   80 (587)
Q Consensus        10 ~~~~l~~~l~s~d~~~R~~a~~~l~~~~~~~~~~~~~~~l~p~l~~~~~~~~~v~~~~~~~l~~~~~~~---------~~   80 (587)
                      ++..++..  |.+++.|..|.+.|..+..  .| .....|+..+.+ .+.+.++|..++-.+.+.....         -.
T Consensus         6 ~l~~ll~~--s~~~~~~k~Ae~~L~~~~~--~p-~f~~~L~~i~~~-~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~   79 (959)
T d1wa5c_           6 TVAKFLAE--SVIASTAKTSERNLRQLET--QD-GFGLTLLHVIAS-TNLPLSTRLAGALFFKNFIKRKWVDENGNHLLP   79 (959)
T ss_dssp             HHHHHHHH--TTSGGGHHHHHHHHHHHHT--ST-THHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSC
T ss_pred             HHHHHHHH--CCChHHHHHHHHHHHHHHc--CC-CHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhcccccccCCCC
Confidence            34444433  4677789999999987632  23 233444444443 1234578888887775543211         01


Q ss_pred             cchHhhhhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCC----
Q 007863           81 LEYANVLLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSA----  156 (587)
Q Consensus        81 ~~~~~~l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~----  156 (587)
                      ++....+-..+...+.+++..+|...+.++..++..-.|+. ++.++|.+.+...+++...+..+...+..+.+..    
T Consensus        80 ~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~-Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~  158 (959)
T d1wa5c_          80 ANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLF  158 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSC
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc-cHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence            12223333444444456788999999999999998765544 5678999998888877777767776666655321    


Q ss_pred             -CHH-------HHHHHHHHHHHhc-------CC-CC-HHHHHHHHHHHHHHHHH---Hhh-------hhhHHHHHHHHHH
Q 007863          157 -PEA-------LKTELRTIYRQLC-------QD-DM-PMVRRSAATNLGKFAAT---VEA-------AHLKSEIMSIFEE  209 (587)
Q Consensus       157 -~~~-------~~~~l~~~l~~l~-------~~-~~-~~vR~~a~~~l~~l~~~---~~~-------~~~~~~i~~~l~~  209 (587)
                       +..       ..+.+.+.+..++       .. .. ...-......+....+.   ...       ......+.+.+..
T Consensus       159 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (959)
T d1wa5c_         159 RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHK  238 (959)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence             111       1222333332222       11 11 11111111111111111   110       1222334444444


Q ss_pred             hcccCc---------------hhHHHHHHHHHHHHhcccCh--hhhhhchHHHHHHhc----C-CCchHHHHHHHHHHHH
Q 007863          210 LTQDDQ---------------DSVRLLAVEGCGALGKLLEP--QDCVAHILPVIVNFS----Q-DKSWRVRYMVANQLYE  267 (587)
Q Consensus       210 l~~d~~---------------~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~----~-d~~~~vR~~a~~~l~~  267 (587)
                      ++....               ..++......+..+.+..++  ..+.+.+++.+.+.+    . .....+...++..+..
T Consensus       239 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~  318 (959)
T d1wa5c_         239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (959)
T ss_dssp             HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence            433211               13566666666666555433  112233333333322    2 2344555566666555


Q ss_pred             HHHHhCC--CC----cccchH-HHHHHhc-----------C------------CChHHHHHHHHHhHHHHHHhhCHHHHH
Q 007863          268 LCEAVGP--EP----TRSDVV-PAYVRLL-----------R------------DNEAEVRIAAAGKVTKICRILNPELAI  317 (587)
Q Consensus       268 l~~~~~~--~~----~~~~l~-~~l~~~l-----------~------------d~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (587)
                      ++.....  ..    ....++ +.+..++           .            +..+..|.++...+..++...+.. ..
T Consensus       319 ~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~-~~  397 (959)
T d1wa5c_         319 VTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL-VT  397 (959)
T ss_dssp             HHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH-HH
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhcccc-ch
Confidence            5432110  00    000111 1111111           0            112346778888888888765543 22


Q ss_pred             HhHHHHHhHhc------CCCcHHHHHHHHHHHHhhhhhhc-----------hHHHHHhHHHHHHHh---cCCCChHHHHH
Q 007863          318 QHILPCVKELS------SDSSQHVRSALATVIMGMAPILG-----------KDATIEQLLPIFLSL---LKDEFPDVRLN  377 (587)
Q Consensus       318 ~~~~~~l~~~~------~d~~~~vr~~a~~~l~~l~~~~~-----------~~~~~~~l~~~l~~~---l~d~~~~vr~~  377 (587)
                      +.+.+.+...+      .+.+|..|.+++..++.+....+           .....+.+.+.+...   ..+..+.+|..
T Consensus       398 ~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~  477 (959)
T d1wa5c_         398 NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVD  477 (959)
T ss_dssp             HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHH
Confidence            33444443332      24579999999998887753221           011222233333322   34566889999


Q ss_pred             HHHHhHHhhhhhchhhHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----------hhh---HHHHHHHHHHHH
Q 007863          378 IISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----------VGF---FDDKLGALCMQW  444 (587)
Q Consensus       378 a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~----------~~~---~~~~l~~~l~~~  444 (587)
                      ++..++.+......+.+ ..+++.+...+.+++..+|..++.++..+.....          .+.   +.+.++..+...
T Consensus       478 ~~~~i~~~~~~~~~~~~-~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~  556 (959)
T d1wa5c_         478 AIKYIYTFRNQLTKAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL  556 (959)
T ss_dssp             HHHHHHHTGGGSCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHH
Confidence            99999999987766544 6789999999999999999999999998876432          111   233444445554


Q ss_pred             cCCCch-----HHHHHHHHHHHHHHHHhChhh--hhhchHHHHHhh----hcCC-ccHHHHHHHHHHHHhhcccChHH--
Q 007863          445 LKDKVY-----SIRDAAANNVKRLAEEFGPDW--AMQHIVPQVLEM----INNP-HYLYRMTILQAISLLAPVMGSEI--  510 (587)
Q Consensus       445 l~d~~~-----~vr~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~----l~~~-~~~~r~~a~~~l~~l~~~~~~~~--  510 (587)
                      +.+...     .+......++..++..++...  +...+++.+...    ..++ +...+.....+++.+....+++.  
T Consensus       557 l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~  636 (959)
T d1wa5c_         557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP  636 (959)
T ss_dssp             HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred             HHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHH
Confidence            433222     123457788888888877652  234455554443    3333 45677778888888887666543  


Q ss_pred             -HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh
Q 007863          511 -TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  545 (587)
Q Consensus       511 -~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~  545 (587)
                       +.+.++|.+...++.........+...+..+....
T Consensus       637 ~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~  672 (959)
T d1wa5c_         637 LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS  672 (959)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhC
Confidence             45778888888887777777778888877776543

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.8e-10  Score=112.16  Aligned_cols=146  Identities=13%  Similarity=0.066  Sum_probs=101.8

Q ss_pred             HHHHHHHHHc-CCCchHHHHHHHHHHHHHHHHhCh-------h-hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc
Q 007863          436 KLGALCMQWL-KDKVYSIRDAAANNVKRLAEEFGP-------D-WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM  506 (587)
Q Consensus       436 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~-------~-~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  506 (587)
                      ..++.+...+ ...+..++..+...+..+......       . ......+|.+.+++.+++..+|..++.++..++...
T Consensus       283 ~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         283 DAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             cHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence            3455555444 345677888888888777542221       1 123568999999999999999999999999998643


Q ss_pred             Ch-HHHHHhHHHHHHhhcCCC------CccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCC-CCccHHHHHHH
Q 007863          507 GS-EITCSQLLPVVINASKDR------VPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSED-PDVDVRFFATQ  575 (587)
Q Consensus       507 ~~-~~~~~~~l~~l~~~l~d~------~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d-~~~~Vr~~a~~  575 (587)
                      .. +.+.+..+|.+..++.+.      ++.++..++.+|..+...-+.   .......++.|.+++.+ .++.|+..|..
T Consensus       363 ~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~  442 (457)
T d1xm9a1         363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARL  442 (457)
T ss_dssp             GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHH
Confidence            32 234556677777776542      456999999999998754332   13334577888887654 56789999999


Q ss_pred             HHHHHH
Q 007863          576 ALQSKD  581 (587)
Q Consensus       576 al~~l~  581 (587)
                      +|..+.
T Consensus       443 ~L~~L~  448 (457)
T d1xm9a1         443 LLSDMW  448 (457)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            998874

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.25  E-value=7.2e-13  Score=113.39  Aligned_cols=183  Identities=22%  Similarity=0.231  Sum_probs=130.3

Q ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHh
Q 007863          170 QLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNF  249 (587)
Q Consensus       170 ~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  249 (587)
                      ..+.|+.++||..++..       .+        +..+..+++|+++.||..++..|+       .        +.+..+
T Consensus        49 ~~l~~p~~e~Ra~Aa~~-------a~--------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~L   98 (233)
T d1lrva_          49 QYLADPFWERRAIAVRY-------SP--------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL   98 (233)
T ss_dssp             GGTTCSSHHHHHHHHTT-------SC--------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred             HHhcCCcHHHHHHHHhc-------CC--------HHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHHH
Confidence            56788999999777642       11        123445889999999998876542       1        235667


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcC
Q 007863          250 SQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSS  329 (587)
Q Consensus       250 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~  329 (587)
                      ..|+++.||..++..+.               .+.+..+++|+++.||..++..+       .        .+.+..+++
T Consensus        99 ~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~-------~--------~~~L~~L~~  148 (233)
T d1lrva_          99 MFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRI-------P--------PGRLFRFMR  148 (233)
T ss_dssp             TTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTT
T ss_pred             hcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhcc-------c--------hhHHHHHhc
Confidence            78999999998876431               14566778999999999987642       1        234556788


Q ss_pred             CCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhcCC
Q 007863          330 DSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR  409 (587)
Q Consensus       330 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~~~  409 (587)
                      |+++.||.+++..+       +        .+.+..+++|+++.||..++..++.               |.+..+++|+
T Consensus       149 D~d~~VR~~aA~~~-------~--------~~~L~~l~~D~d~~VR~~aa~~L~~---------------~~L~~l~~D~  198 (233)
T d1lrva_         149 DEDRQVRKLVAKRL-------P--------EESLGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDP  198 (233)
T ss_dssp             CSCHHHHHHHHHHS-------C--------GGGGGGSTTCSSHHHHHHHHHHCCG---------------GGGGGGGGCS
T ss_pred             CCCHHHHHHHHHhc-------C--------HHHHHHHccCCCHHHHHHHHHhcCc---------------HHHHHHHhCC
Confidence            99999999887632       1        1346678899999999998876541               2344567899


Q ss_pred             CcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHH
Q 007863          410 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAAN  458 (587)
Q Consensus       410 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  458 (587)
                      +|.||..+.+.+       +         +.++..+.|+++.||..++.
T Consensus       199 d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         199 DWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            999999886532       2         23456678999999998864

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=4.8e-08  Score=104.61  Aligned_cols=479  Identities=9%  Similarity=0.059  Sum_probs=264.0

Q ss_pred             CchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCC-CCcchhhHHhhhhhhcc----------CCCHHHHHHHH
Q 007863           97 VEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGE-WFTARVSSCGLFHVAYP----------SAPEALKTELR  165 (587)
Q Consensus        97 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~-~~~~r~~a~~l~~~~~~----------~~~~~~~~~l~  165 (587)
                      ..++..|+.|-+.|..+...  | .+...++..+   .+++ ...+|..|+-.+.....          ..+++.+..+.
T Consensus        14 s~~~~~~k~Ae~~L~~~~~~--p-~f~~~L~~i~---~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik   87 (959)
T d1wa5c_          14 SVIASTAKTSERNLRQLETQ--D-GFGLTLLHVI---ASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK   87 (959)
T ss_dssp             TTSGGGHHHHHHHHHHHHTS--T-THHHHHHHHH---HCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHcC--C-CHHHHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHH
Confidence            34666788888888886543  1 2222222222   2233 34577776655543321          24566677777


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChh---------
Q 007863          166 TIYRQLCQDDMPMVRRSAATNLGKFAATVEAAHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQ---------  236 (587)
Q Consensus       166 ~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~---------  236 (587)
                      ..+...+.+++..+|...+.+++.++..-. +.-|+.++|.+.+.++++++..+..+..++..+.+.....         
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~-p~~Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~  166 (959)
T d1wa5c_          88 KEIVPLMISLPNNLQVQIGEAISSIADSDF-PDRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLE  166 (959)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHS-TTTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHHhC-ccccHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhH
Confidence            777777777889999999999999987533 3567889999999999988888999999999888654321         


Q ss_pred             --hhhhchHHHHHHhc-------C-CC-chHHHHHHHHHHH---HHHHHhCCCCcc-------cchHHHHHHhcCC----
Q 007863          237 --DCVAHILPVIVNFS-------Q-DK-SWRVRYMVANQLY---ELCEAVGPEPTR-------SDVVPAYVRLLRD----  291 (587)
Q Consensus       237 --~~~~~l~~~l~~~~-------~-d~-~~~vR~~a~~~l~---~l~~~~~~~~~~-------~~l~~~l~~~l~d----  291 (587)
                        ...+.+.+.+..++       . .. +...-......+.   ++..........       ..+...+..++..    
T Consensus       167 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  246 (959)
T d1wa5c_         167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPL  246 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhccccc
Confidence              11122333333222       1 11 1111111111111   111111111101       1223333333321    


Q ss_pred             ---C--------hHHHHHHHHHhHHHHHHhhCHH--HHHHhHHHHHhHhc-----CCCcHHHHHHHHHHHHhhhhhhc--
Q 007863          292 ---N--------EAEVRIAAAGKVTKICRILNPE--LAIQHILPCVKELS-----SDSSQHVRSALATVIMGMAPILG--  351 (587)
Q Consensus       292 ---~--------~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~~-----~d~~~~vr~~a~~~l~~l~~~~~--  351 (587)
                         .        ...++......+..+.+..+..  .+.+.+++.+.+.+     ......+...++..+..+.....  
T Consensus       247 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  326 (959)
T d1wa5c_         247 LEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYF  326 (959)
T ss_dssp             CC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHH
T ss_pred             ccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHH
Confidence               1        1356777777777776654432  22233333333222     22345666666666665544321  


Q ss_pred             ----hHHHHHhHH-HHHHHhcC-----------------------CCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHH
Q 007863          352 ----KDATIEQLL-PIFLSLLK-----------------------DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV  403 (587)
Q Consensus       352 ----~~~~~~~l~-~~l~~~l~-----------------------d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~  403 (587)
                          .......++ +.+...+.                       +.....|..+...+..++...+... .+.+.+.+.
T Consensus       327 ~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~-~~~~~~~i~  405 (959)
T d1wa5c_         327 EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV-TNIFLAHMK  405 (959)
T ss_dssp             GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH-HHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccc-hHHHHHHHH
Confidence                111122221 12222211                       1112356666667777766554332 233444444


Q ss_pred             HHh------cCCCcHHHHHHHHHHHHHHHhhCh-----------hhHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHH
Q 007863          404 ELA------EDRHWRVRLAIIEYIPLLASQLGV-----------GFFDDKLGALCMQWL---KDKVYSIRDAAANNVKRL  463 (587)
Q Consensus       404 ~~~------~~~~~~vr~~~~~~l~~l~~~~~~-----------~~~~~~l~~~l~~~l---~d~~~~vr~~a~~~l~~l  463 (587)
                      ..+      .+.+|..|..++..++.+....+.           ..+.+.+.+.+...+   .++...+|..++..++.+
T Consensus       406 ~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~  485 (959)
T d1wa5c_         406 GFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF  485 (959)
T ss_dssp             HHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT
T ss_pred             HHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHH
Confidence            433      246899999999988887642210           112333444433333   445678999999999998


Q ss_pred             HHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh-------------HHHHHhHHHHHHhhcCCCCccH
Q 007863          464 AEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS-------------EITCSQLLPVVINASKDRVPNI  530 (587)
Q Consensus       464 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-------------~~~~~~~l~~l~~~l~d~~~~v  530 (587)
                      ......+ ....+++.+.+.+.+++..+|..|+.++..+......             .++.+.++..++..+.+.....
T Consensus       486 ~~~~~~~-~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~  564 (959)
T d1wa5c_         486 RNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSP  564 (959)
T ss_dssp             GGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCH
T ss_pred             HhhccHH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchh
Confidence            8766655 3467899999999999999999999999999863321             1245566666666655443322


Q ss_pred             -----HHHHHHHHHHHHhhhchH--HHHHhHHHHH----HHhcCC-CCccHHHHHHHHHHHHHHHh
Q 007863          531 -----KFNVAKVLQSLIPIVDQS--VVEKSIRPCL----VELSED-PDVDVRFFATQALQSKDQVM  584 (587)
Q Consensus       531 -----R~~a~~~l~~l~~~~~~~--~~~~~i~~~l----~~l~~d-~~~~Vr~~a~~al~~l~~~~  584 (587)
                           +..++.++..++..++..  ++...+++.+    ....++ .++.....+.++++.+....
T Consensus       565 ~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~  630 (959)
T d1wa5c_         565 EKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT  630 (959)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhc
Confidence                 234778888887776542  3333444444    344333 34556666777777766543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.24  E-value=9.8e-13  Score=112.54  Aligned_cols=183  Identities=18%  Similarity=0.278  Sum_probs=119.7

Q ss_pred             HhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHh
Q 007863          248 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKEL  327 (587)
Q Consensus       248 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~  327 (587)
                      ..+.|+.|++|..|++.               .-+..+..+++|+++.||..+++.|+       .        +.+..+
T Consensus        49 ~~l~~p~~e~Ra~Aa~~---------------a~~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~L   98 (233)
T d1lrva_          49 QYLADPFWERRAIAVRY---------------SPVEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSAL   98 (233)
T ss_dssp             GGTTCSSHHHHHHHHTT---------------SCGGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGGT
T ss_pred             HHhcCCcHHHHHHHHhc---------------CCHHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHHH
Confidence            36678888888776531               11345667888899999988887653       1        346677


Q ss_pred             cCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhhchhhHhhhhHHHHHHHhc
Q 007863          328 SSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE  407 (587)
Q Consensus       328 ~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~~~~~l~~~~~  407 (587)
                      ++|+++.||..++..+.               .+.+..+++|+++.||..++..+..               +.+..+++
T Consensus        99 ~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~~~---------------~~L~~L~~  148 (233)
T d1lrva_          99 MFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPP---------------GRLFRFMR  148 (233)
T ss_dssp             TTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHSCG---------------GGGGGTTT
T ss_pred             hcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhccch---------------hHHHHHhc
Confidence            78888889888876431               1235567788888888888765321               11224567


Q ss_pred             CCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCC
Q 007863          408 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNP  487 (587)
Q Consensus       408 ~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~  487 (587)
                      |+++.||..+...+       +.        +.+..+++|+++.||..++..++       .        +.+..++.|+
T Consensus       149 D~d~~VR~~aA~~~-------~~--------~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D~  198 (233)
T d1lrva_         149 DEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHDP  198 (233)
T ss_dssp             CSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGCS
T ss_pred             CCCHHHHHHHHHhc-------CH--------HHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhCC
Confidence            88888888776432       22        33556678888888887775542       1        3355567888


Q ss_pred             ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHH
Q 007863          488 HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAK  536 (587)
Q Consensus       488 ~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~  536 (587)
                      +|.||.+++..+       +         +.++..+.|+++.||..+++
T Consensus       199 d~~VR~aaae~~-------~---------~~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         199 DWTVRLAAVEHA-------S---------LEALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SHHHHHHHHHHS-------C---------HHHHHHCCCCCHHHHHHHHC
T ss_pred             CHHHHHHHHHhc-------c---------HHHHHHhCCCCHHHHHHHHH
Confidence            888887776421       1         23455667888888877754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.14  E-value=2.5e-12  Score=97.92  Aligned_cols=110  Identities=17%  Similarity=0.223  Sum_probs=91.4

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcC
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASK  524 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~  524 (587)
                      |.|+++.||..|+.+|+.+    |.     ..++.+.+.+.|+++.+|..++.+++.+..        ...+|.+..+++
T Consensus         1 L~D~~~~VR~~A~~aL~~~----~~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRM----GD-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSC----SS-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHh----CH-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhc
Confidence            5688899999999888763    32     346778888999999999999999987653        356788888999


Q ss_pred             CCCccHHHHHHHHHHHHHhhhchHHHHHhHHHHHHHhcCCCCccHHHHHHHHHHH
Q 007863          525 DRVPNIKFNVAKVLQSLIPIVDQSVVEKSIRPCLVELSEDPDVDVRFFATQALQS  579 (587)
Q Consensus       525 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~  579 (587)
                      |+++.||..++.+|+.+..        ....|.|.++++|+++.||..|..+|++
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~t  110 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  110 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence            9999999999999998843        3678888999999999999999998864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.3e-08  Score=98.60  Aligned_cols=381  Identities=9%  Similarity=0.008  Sum_probs=198.6

Q ss_pred             hhhHHHhhhcCchhHHHHHHHHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHH
Q 007863           87 LLPPLETLCTVEETCVRDKAVESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRT  166 (587)
Q Consensus        87 l~~~l~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~  166 (587)
                      .+|.+.+++.++++.++..|+.+|+.++..-+.  ....+                                 .....+|
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~--~~~~i---------------------------------~~~g~i~   47 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES--AKQQV---------------------------------YQLGGIC   47 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS--HHHHH---------------------------------HHTTHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHH--HHHHH---------------------------------HHCCcHH
Confidence            467788888888888888888888887754221  11110                                 1123467


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHhh--hh-hHHHHHHHHHHhc-ccCchhHHHHHHHHHHHHhcccChh-h-hhh
Q 007863          167 IYRQLCQDDMPMVRRSAATNLGKFAATVEA--AH-LKSEIMSIFEELT-QDDQDSVRLLAVEGCGALGKLLEPQ-D-CVA  240 (587)
Q Consensus       167 ~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~i~~~l~~l~-~d~~~~vr~~a~~~l~~l~~~~~~~-~-~~~  240 (587)
                      .+..+++++++.+|..++.+|+.++...+.  .. .....++.+..++ ++.++.+|..+..++..+....... . ...
T Consensus        48 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  127 (457)
T d1xm9a1          48 KLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIAD  127 (457)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhc
Confidence            777888888999999999999888732111  11 1111244444444 4556788989999988887654331 1 111


Q ss_pred             chHHHHHHh---------------cCCCchHHHHHHHHHHHHHHHHhCC---CCcccchHHHHHHhcCCChHH------H
Q 007863          241 HILPVIVNF---------------SQDKSWRVRYMVANQLYELCEAVGP---EPTRSDVVPAYVRLLRDNEAE------V  296 (587)
Q Consensus       241 ~l~~~l~~~---------------~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~------v  296 (587)
                      .+.+.+...               ....+..++..++.++..++..-..   ......+++.+..++++....      .
T Consensus       128 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~  207 (457)
T d1xm9a1         128 ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKS  207 (457)
T ss_dssp             HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTT
T ss_pred             ccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHH
Confidence            122222211               1334678888888887766432110   011223556666555322111      1


Q ss_pred             HHHHHHhHHHHHHhhCHHHHHHhHHHHHh-------------HhcCCCcHHHHHHHHH-HHHhhhhhhc--hHHHHHhHH
Q 007863          297 RIAAAGKVTKICRILNPELAIQHILPCVK-------------ELSSDSSQHVRSALAT-VIMGMAPILG--KDATIEQLL  360 (587)
Q Consensus       297 r~~a~~~l~~l~~~~~~~~~~~~~~~~l~-------------~~~~d~~~~vr~~a~~-~l~~l~~~~~--~~~~~~~l~  360 (587)
                      ...+...+..........  .......+.             ..+............. .+........  .......++
T Consensus       208 ~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  285 (457)
T d1xm9a1         208 VENCMCVLHNLSYRLDAE--VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAI  285 (457)
T ss_dssp             HHHHHHHHHHHTTTHHHH--SCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHH
T ss_pred             HHHHHHHHhhhhhhhHHH--HHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHH
Confidence            111111111111000000  000000000             0000000011111110 0101100000  111122345


Q ss_pred             HHHHHhcC-CCChHHHHHHHHHhHHhhhhhch-------h-hHhhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-
Q 007863          361 PIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI-------D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-  430 (587)
Q Consensus       361 ~~l~~~l~-d~~~~vr~~a~~~l~~i~~~~~~-------~-~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~-  430 (587)
                      +.+..++. ..++.++..+...+..+......       . ......+|.+..++.++++.+|..++..+..++..... 
T Consensus       286 ~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~  365 (457)
T d1xm9a1         286 RTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH  365 (457)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHH
Confidence            55555543 45677888888877776543221       0 11235688899999999999999999999888754322 


Q ss_pred             hhHHHHHHHHHHHHcC------CCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCC-ccHHHHHHHHHHH
Q 007863          431 GFFDDKLGALCMQWLK------DKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNP-HYLYRMTILQAIS  500 (587)
Q Consensus       431 ~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~-~~~~r~~a~~~l~  500 (587)
                      +.+....++.+...+.      +.+.+++..++.++..+.......   ......++.+.+++.++ +..++.+|+.++.
T Consensus       366 ~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~  445 (457)
T d1xm9a1         366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS  445 (457)
T ss_dssp             HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            2233445566666653      245678999999998887533221   12245677888876554 5678888888888


Q ss_pred             Hhhc
Q 007863          501 LLAP  504 (587)
Q Consensus       501 ~l~~  504 (587)
                      .+..
T Consensus       446 ~L~~  449 (457)
T d1xm9a1         446 DMWS  449 (457)
T ss_dssp             TTSS
T ss_pred             HHHc
Confidence            8754

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.06  E-value=9e-12  Score=94.74  Aligned_cols=108  Identities=20%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCC
Q 007863          251 QDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSD  330 (587)
Q Consensus       251 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d  330 (587)
                      +|+++.||..|+..|+.+    +     +..++.+...++|+++.||..++.+|+.+..        +..+|.+.++++|
T Consensus         2 ~D~~~~VR~~A~~aL~~~----~-----~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~d   64 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRM----G-----DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLED   64 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSC----S-----STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh----C-----HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhcc
Confidence            566666777666665542    1     1234556666667777777777766665432        2345566666667


Q ss_pred             CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhH
Q 007863          331 SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  383 (587)
Q Consensus       331 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~  383 (587)
                      +++.||..++.+|+.+..        +...|.+..+++|+++.||..++.+|.
T Consensus        65 ~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          65 DSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             CCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             chhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            777777777777766541        234456666666777777776666654

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.6e-08  Score=88.64  Aligned_cols=145  Identities=18%  Similarity=0.142  Sum_probs=111.0

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHHHHHhCh---hhhhhchHHHHHhhhc-CCccHHHHHHHHHHHHhhcccChH---H
Q 007863          438 GALCMQWLKDKVYSIRDAAANNVKRLAEEFGP---DWAMQHIVPQVLEMIN-NPHYLYRMTILQAISLLAPVMGSE---I  510 (587)
Q Consensus       438 ~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~---~  510 (587)
                      .+++..++++++.++|..|+.+|+.++.....   .......+|.+..++. +++..+|..++.++..++......   .
T Consensus        61 ~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~  140 (264)
T d1xqra1          61 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF  140 (264)
T ss_dssp             HHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHH
Confidence            44445678889999999999999999864322   1234678888888874 567889999999999998654432   2


Q ss_pred             HHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch---HHHHHhHHHHHHHhcCCCCccHHHHHHHHHHHHHH
Q 007863          511 TCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SVVEKSIRPCLVELSEDPDVDVRFFATQALQSKDQ  582 (587)
Q Consensus       511 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~~  582 (587)
                      .....++.+..++.++++.++..++.+|..++..-+.   .......+|.|..++.++++++|..|..||..++.
T Consensus       141 ~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         141 LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            3456788889999999999999999999998765332   23344578999999999999999999999988864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=7e-07  Score=79.07  Aligned_cols=146  Identities=16%  Similarity=0.190  Sum_probs=101.6

Q ss_pred             HHHHHhcCCCChHHHHHHHHHhHHhhhhhch---hhHhhhhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChh---hH
Q 007863          361 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVG---FF  433 (587)
Q Consensus       361 ~~l~~~l~d~~~~vr~~a~~~l~~i~~~~~~---~~~~~~~~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~---~~  433 (587)
                      +.+..+++++++++|..++..++.++..-..   .......+|.+..++. +.++.+|..++.++..++......   +.
T Consensus        62 ~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  141 (264)
T d1xqra1          62 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL  141 (264)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHH
Confidence            3344567777777788877777777754221   1123456777777764 566778888888887776543221   12


Q ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChh---hhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhccc
Q 007863          434 DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPD---WAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVM  506 (587)
Q Consensus       434 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  506 (587)
                      ....++.+..++.+++..++..++.+++.++......   ......+|.+..++.+++..+|..++.++..++...
T Consensus       142 ~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         142 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            2335677888888899999999999999988654322   123557889999999999999999999999987643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.01  E-value=0.00025  Score=63.80  Aligned_cols=150  Identities=11%  Similarity=0.027  Sum_probs=90.7

Q ss_pred             CCcHHHHHHHHHHHHHHHhhC------hhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHh
Q 007863          409 RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLE  482 (587)
Q Consensus       409 ~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  482 (587)
                      .++.+|..++-.++.++...-      .+.+.+.+...+.+.....+.+-+..++++||++.        ....++.+..
T Consensus       139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g--------~p~~i~~l~~  210 (336)
T d1lsha1         139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG--------QPNSIKKIQR  210 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------CGGGHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC--------CHhHHHHHHH
Confidence            356666666666666654431      12233455555656666667677777888888764        2345666666


Q ss_pred             hhcCC-------ccHHHHHHHHHHHHhhcccChHHHHHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhh----------
Q 007863          483 MINNP-------HYLYRMTILQAISLLAPVMGSEITCSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIV----------  545 (587)
Q Consensus       483 ~l~~~-------~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~----------  545 (587)
                      .+.+.       ...+|.+|++++..+.... +....+.+++.+.+  .+.++++|..|...+-..-+..          
T Consensus       211 ~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~P~~~~l~~i~~~l  287 (336)
T d1lsha1         211 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESKPSVALVSMVAVRL  287 (336)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             HhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            65432       4578999999998886643 33345556666655  3457889999888876542221          


Q ss_pred             ---chHHHHHhHHHHHHHhcCCCCccH
Q 007863          546 ---DQSVVEKSIRPCLVELSEDPDVDV  569 (587)
Q Consensus       546 ---~~~~~~~~i~~~l~~l~~d~~~~V  569 (587)
                         ....+.+.+...|..+.+.++|+-
T Consensus       288 ~~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         288 RREPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             TTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HhCcHHHHHHHHHHHHHHHHhCCCcch
Confidence               112445556666666666555543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.96  E-value=0.00061  Score=61.20  Aligned_cols=168  Identities=11%  Similarity=0.059  Sum_probs=99.9

Q ss_pred             hHHHHHHhcCC----CchHHHHHHHHHHHHHHHHhCC--CCcccchH----HHHHHhcCCChHHHHHHHHHhHHHHHHhh
Q 007863          242 ILPVIVNFSQD----KSWRVRYMVANQLYELCEAVGP--EPTRSDVV----PAYVRLLRDNEAEVRIAAAGKVTKICRIL  311 (587)
Q Consensus       242 l~~~l~~~~~d----~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~----~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  311 (587)
                      .+..+..++.+    .++.+|..+.-++|.++...-.  ......++    ..+.+..+..+.+-+..++++||+++.  
T Consensus       124 ~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--  201 (336)
T d1lsha1         124 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--  201 (336)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--
Confidence            44444455544    4789999999999998875432  22223333    333344445556667778888888753  


Q ss_pred             CHHHHHHhHHHHHhHhcCC-------CcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHH
Q 007863          312 NPELAIQHILPCVKELSSD-------SSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  384 (587)
Q Consensus       312 ~~~~~~~~~~~~l~~~~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  384 (587)
                            +..++.+..++.+       .+..+|.+|+.++..+.... +....+.+++++.+  .+.++++|.+|...+-.
T Consensus       202 ------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         202 ------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             ------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred             ------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence                  3344555555532       35789999999988876543 22333444444443  34468899888888755


Q ss_pred             hhhhhchhhHhhhhHHHHHHHh-cCCCcHHHHHHHHHHHHHHHh
Q 007863          385 VNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQ  427 (587)
Q Consensus       385 i~~~~~~~~~~~~~~~~l~~~~-~~~~~~vr~~~~~~l~~l~~~  427 (587)
                      --+.       ..++..+...+ .+++..|+..+...+..+++.
T Consensus       273 t~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         273 SKPS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             TCCC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             cCCC-------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            3221       22444444433 566777776666666655553

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.84  Score=41.47  Aligned_cols=55  Identities=13%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             ccHHHHHHHHHHHHhhcccChHHH-HH--hHHHHHHhhcCCCCccHHHHHHHHHHHHH
Q 007863          488 HYLYRMTILQAISLLAPVMGSEIT-CS--QLLPVVINASKDRVPNIKFNVAKVLQSLI  542 (587)
Q Consensus       488 ~~~~r~~a~~~l~~l~~~~~~~~~-~~--~~l~~l~~~l~d~~~~vR~~a~~~l~~l~  542 (587)
                      +..+-..|+.=+|.+++.++.... .+  ..-..+.+++++++++||..|+.++..+.
T Consensus       415 D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            344555666666666666654321 11  12334555556666666666666666554

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.50  E-value=0.87  Score=41.37  Aligned_cols=116  Identities=11%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             HHHHHHHHhhcChhhHhhhhHHHHHHhhcCCCCcchhhHHhhhhhhccCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 007863          107 VESLCRIGSQMREQDVVEHFIPLVKRLAAGEWFTARVSSCGLFHVAYPSAPEALKTELRTIYRQLCQDDMPMVRRSAATN  186 (587)
Q Consensus       107 ~~~l~~l~~~~~~~~~~~~ll~~~~~l~~~~~~~~r~~a~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~vR~~a~~~  186 (587)
                      ++++-.+....+.+++.++++-++.++..++.+.  ......+.   .     ....+.+.+..++..+++-+-..++..
T Consensus        76 ~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~--~~~~~~~~---~-----~~~~~~~~f~~~l~~~d~~~~~~s~~i  145 (477)
T d1ho8a_          76 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYG--DDTVKFFQ---E-----DPKQLEQLFDVSLKGDFQTVLISGFNV  145 (477)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSS--HHHHHHHH---H-----CTTHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcch--hHHHHHHh---h-----CccchhHHHHHhccCchhHHHHHHHHH
Confidence            4455555566666666777777777766664321  11111111   1     112233445555566666666666655


Q ss_pred             HHHHHHHHhh----hhhHHHHHHHHHHhcccCchhHHHHHHHHHHHHhcc
Q 007863          187 LGKFAATVEA----AHLKSEIMSIFEELTQDDQDSVRLLAVEGCGALGKL  232 (587)
Q Consensus       187 l~~l~~~~~~----~~~~~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~  232 (587)
                      +..++..-..    ..........+..+.+..+......++.++..+...
T Consensus       146 ~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~  195 (477)
T d1ho8a_         146 VSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI  195 (477)
T ss_dssp             HHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcC
Confidence            5555432111    111222334445555656666666777777766543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=1  Score=38.30  Aligned_cols=206  Identities=11%  Similarity=0.112  Sum_probs=123.0

Q ss_pred             HHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhhh-chh----hH---hhhhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 007863          355 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GID----LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  426 (587)
Q Consensus       355 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~~-~~~----~~---~~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~  426 (587)
                      +.+.++..+...+..-+-+.|+.+...++.+...- |..    ++   .+.++..+....++++...  .+-..+.... 
T Consensus        66 ~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl--~~G~mLREci-  142 (330)
T d1upka_          66 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECI-  142 (330)
T ss_dssp             HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHH-
T ss_pred             HHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhh--hhhHHHHHHH-
Confidence            34556666666666666777777777666655321 110    00   1345555555545444332  1111121111 


Q ss_pred             hhChhhHH-----HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh---Chhhh---hhchHHHHHhhhcCCccHHHHHH
Q 007863          427 QLGVGFFD-----DKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF---GPDWA---MQHIVPQVLEMINNPHYLYRMTI  495 (587)
Q Consensus       427 ~~~~~~~~-----~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~---~~~~~~~l~~~l~~~~~~~r~~a  495 (587)
                        ..+.+.     +.-+..+..+++.++.+|-..|..++..+...-   ..+++   -+.++....+++.++|+.+|..+
T Consensus       143 --k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS  220 (330)
T d1upka_         143 --RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS  220 (330)
T ss_dssp             --TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             --hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence              111111     112334557788899999999998888776532   11222   25566667778999999999999


Q ss_pred             HHHHHHhhcccChHH----H--HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch-H-------HHHHhHHHHHHHh
Q 007863          496 LQAISLLAPVMGSEI----T--CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-S-------VVEKSIRPCLVEL  561 (587)
Q Consensus       496 ~~~l~~l~~~~~~~~----~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~-------~~~~~i~~~l~~l  561 (587)
                      +..++.+.-.-....    |  ...-+..+..+++|.+.+++..|...+...+..-.. .       .-.+.++..|..+
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f  300 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  300 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhC
Confidence            999999984222111    1  245677888999999999999999888877654221 1       1224456666666


Q ss_pred             cCCC
Q 007863          562 SEDP  565 (587)
Q Consensus       562 ~~d~  565 (587)
                      .+|.
T Consensus       301 ~~d~  304 (330)
T d1upka_         301 QNDR  304 (330)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence            6675

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=1.2  Score=37.78  Aligned_cols=184  Identities=8%  Similarity=0.026  Sum_probs=119.7

Q ss_pred             hhhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-Ch-----hhH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Q 007863          396 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GV-----GFF--DDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEF  467 (587)
Q Consensus       396 ~~~~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~-~~-----~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~  467 (587)
                      ..++..+...+..=++..|+.+...+..+.+.- |.     +.+  .+.++..+.....+++...  .+...|..+++.-
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl--~~G~mLREcik~e  145 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE  145 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhh--hhhHHHHHHHhhH
Confidence            456777777777788999999988888776532 21     111  1456777777776655433  2222333332211


Q ss_pred             C--hhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccCh---HH---HHHhHHHHHHhhcCCCCccHHHHHHHHHH
Q 007863          468 G--PDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGS---EI---TCSQLLPVVINASKDRVPNIKFNVAKVLQ  539 (587)
Q Consensus       468 ~--~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~---~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  539 (587)
                      .  .-.....-+..++++...++..+-.-|...+..+......   +.   ..+.+...+..++.++++..|..+++.|+
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            0  0011233344566778888998888888888777653321   11   24566677788999999999999999999


Q ss_pred             HHHhhhchHHH----H--HhHHHHHHHhcCCCCccHHHHHHHHHHHHH
Q 007863          540 SLIPIVDQSVV----E--KSIRPCLVELSEDPDVDVRFFATQALQSKD  581 (587)
Q Consensus       540 ~l~~~~~~~~~----~--~~i~~~l~~l~~d~~~~Vr~~a~~al~~l~  581 (587)
                      .+...-.+..+    .  ..-+..+..++.|+..+|+.-|-..++-+.
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFV  273 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV  273 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhh
Confidence            99754333211    1  345778888999999999999988877553

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.22  E-value=2.9  Score=33.56  Aligned_cols=135  Identities=6%  Similarity=-0.013  Sum_probs=80.9

Q ss_pred             HHHHHHHHHhcccCchhHHHHHHHHHHHHhcccChhhhhhchHHHHHHhcCC-CchHHHHHHHHHHHHHHHHhCCCCccc
Q 007863          201 SEIMSIFEELTQDDQDSVRLLAVEGCGALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRS  279 (587)
Q Consensus       201 ~~i~~~l~~l~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~  279 (587)
                      +.+...+..+...+.-+.|..|+..+........     +..++.+...+.+ ++|.+--..+..++.....     ..+
T Consensus        49 ~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~-----~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~-----~~~  118 (213)
T d2b6ca1          49 EKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-----HLT  118 (213)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-----SGG
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-----hhh
Confidence            4455566666677777788888877776655432     2234555555544 4576666555544332221     134


Q ss_pred             chHHHHHHhcCCChHHHHHHHHHhHHHHHHhhCHHHHHHhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhh
Q 007863          280 DVVPAYVRLLRDNEAEVRIAAAGKVTKICRILNPELAIQHILPCVKELSSDSSQHVRSALATVIMGMAPI  349 (587)
Q Consensus       280 ~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~  349 (587)
                      .+.+.+....++++.-+|..++.+.-.....-.    .+.++..+..+..|++..||.+...+|..++..
T Consensus       119 ~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~~~~----~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         119 ELPTIFALFYGAENFWNRRVALNLQLMLKEKTN----QDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCC----HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHHHHccc----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            466777777777776666666554432222111    244566667777888888888888888887754

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.18  E-value=2.6  Score=33.90  Aligned_cols=136  Identities=9%  Similarity=-0.013  Sum_probs=88.4

Q ss_pred             hhchHHHHHHhcCCCchHHHHHHHHHHHHHHHHhCCCCcccchHHHHHHhcCC-ChHHHHHHHHHhHHHHHHhhCHHHHH
Q 007863          239 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRSDVVPAYVRLLRD-NEAEVRIAAAGKVTKICRILNPELAI  317 (587)
Q Consensus       239 ~~~l~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~  317 (587)
                      .+.+...+..+...+..+.|..|+..+.......     ....++.+..++.. ++|.+-...+..++..... .+    
T Consensus        48 ~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~-----~~~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~-~~----  117 (213)
T d2b6ca1          48 KEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRF-----SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-HL----  117 (213)
T ss_dssp             HHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGC-----CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-SG----
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcc-----CHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH-hh----
Confidence            3445566666777777889999988776544321     22345666666654 4588877766665443332 11    


Q ss_pred             HhHHHHHhHhcCCCcHHHHHHHHHHHHhhhhhhchHHHHHhHHHHHHHhcCCCChHHHHHHHHHhHHhhhh
Q 007863          318 QHILPCVKELSSDSSQHVRSALATVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  388 (587)
Q Consensus       318 ~~~~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~i~~~  388 (587)
                      +...+.+.+...+.+..+|++++-+.-...    .+...+.++..+..++.|++.-||.+..+.|..++..
T Consensus       118 ~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~----~~~~~~~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         118 TELPTIFALFYGAENFWNRRVALNLQLMLK----EKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  184 (213)
T ss_dssp             GGHHHHHHHHTTCSSHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH----HcccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence            234566777788888888887754432221    2222345677788889999999999999999988755

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=2.7  Score=31.12  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=67.3

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  520 (587)
                      +..++|..-...+..+..     +.+ -....+..+.+.+.++++.+...|+..+..+..++|..+.    ...++..+.
T Consensus        14 ~~~~dw~~il~icD~I~~-----~~~-~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~   87 (143)
T d1mhqa_          14 MSEQDWSAIQNFCEQVNT-----DPN-GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (143)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----SSH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc-----CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            445666554444444321     111 1234566677778889999999999999999999987642    345677777


Q ss_pred             hhcCC------CCccHHHHHHHHHHHHHhhhchH
Q 007863          521 NASKD------RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      ++..+      .++.||..++..+..+...++..
T Consensus        88 ~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~~  121 (143)
T d1mhqa_          88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPED  121 (143)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            77653      36779999999999998887653

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=3.6  Score=30.51  Aligned_cols=74  Identities=12%  Similarity=0.112  Sum_probs=51.6

Q ss_pred             hchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHHhhcCC------CCccHHHHHHHHHHHHHh
Q 007863          474 QHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVINASKD------RVPNIKFNVAKVLQSLIP  543 (587)
Q Consensus       474 ~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~l~~  543 (587)
                      ...+..+.+.+.+++..+...|+..+..+..++|..+.    ...++..+.+++.+      .+..||..++..+..+..
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            33455566667778888888888888888888887532    34556666665543      456788888888888877


Q ss_pred             hhch
Q 007863          544 IVDQ  547 (587)
Q Consensus       544 ~~~~  547 (587)
                      .++.
T Consensus       124 ~fp~  127 (145)
T d1ujka_         124 GLPE  127 (145)
T ss_dssp             HCTT
T ss_pred             HCCC
Confidence            6643

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.31  E-value=2.8  Score=31.12  Aligned_cols=74  Identities=11%  Similarity=0.090  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHhcccC-chhHHHHHHHHHHHHhcccC
Q 007863          161 KTELRTIYRQLCQDDMPMVRRSAATNLGKFAATVEAAH----LKSEIMSIFEELTQDD-QDSVRLLAVEGCGALGKLLE  234 (587)
Q Consensus       161 ~~~l~~~l~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~----~~~~i~~~l~~l~~d~-~~~vr~~a~~~l~~l~~~~~  234 (587)
                      .+.....+.+-++++++.++..++..|..++.++|..-    ....++..+..+++.. +..||.-..+.+...+..+.
T Consensus        40 ~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            34566666777788999999999999999998876521    1122333333343332 44566666666666555544

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.05  E-value=1.1  Score=33.45  Aligned_cols=99  Identities=7%  Similarity=0.079  Sum_probs=65.1

Q ss_pred             HcCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHH
Q 007863          444 WLKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVV  519 (587)
Q Consensus       444 ~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l  519 (587)
                      .+.+++|..-...+..+..  ...|    ....+..+.+.+.++++.+...|+..+..+..++|....    ...++..+
T Consensus        17 ~~~~~dw~~il~icD~I~~--~~~~----~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l   90 (145)
T d1dvpa1          17 LRLEPDWPSILLICDEINQ--KDVT----PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF   90 (145)
T ss_dssp             TCSSCCHHHHHHHHHHHHT--TSSC----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhC--CCcc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHH
Confidence            3456677655544444431  1111    244666677778889999999999999999988876531    23445555


Q ss_pred             HhhcCC-CCccHHHHHHHHHHHHHhhhchH
Q 007863          520 INASKD-RVPNIKFNVAKVLQSLIPIVDQS  548 (587)
Q Consensus       520 ~~~l~d-~~~~vR~~a~~~l~~l~~~~~~~  548 (587)
                      .+++.. +...||..++..+..+...++.+
T Consensus        91 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          91 SSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            554433 46689999999999988877643

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.91  E-value=8.1  Score=28.68  Aligned_cols=95  Identities=5%  Similarity=0.049  Sum_probs=58.5

Q ss_pred             cCCCcHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhChhhh----hhchHHHHHh
Q 007863          407 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSIRDAAANNVKRLAEEFGPDWA----MQHIVPQVLE  482 (587)
Q Consensus       407 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~----~~~~~~~l~~  482 (587)
                      .+++|..-..++..+..     +... ....+..+..-+.+.++.+...|+..|..+++.+|..+.    ...++..+.+
T Consensus        16 ~~~dw~~ileicD~In~-----~~~~-~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~k   89 (151)
T d1juqa_          16 RQEDWEYIIGFCDQINK-----ELEG-PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIK   89 (151)
T ss_dssp             SSCCHHHHHHHHHHHHH-----STTH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhc-----CCcc-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHH
Confidence            45677765555444431     1111 234455566667788888888888888888888877652    2456666666


Q ss_pred             hhcC------CccHHHHHHHHHHHHhhcccC
Q 007863          483 MINN------PHYLYRMTILQAISLLAPVMG  507 (587)
Q Consensus       483 ~l~~------~~~~~r~~a~~~l~~l~~~~~  507 (587)
                      ++..      .+..|+...+..+..-+..++
T Consensus        90 li~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~  120 (151)
T d1juqa_          90 VVSPKYLGDRVSEKVKTKVIELLYSWTMALP  120 (151)
T ss_dssp             HHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence            6543      244577777777766665544

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.85  E-value=15  Score=31.18  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             CchHHHH-HHHHHHHHHHHHhChhh------hhhchHHHHHhhhcC---CccHHHHHHHHHHHHhhcccChH------HH
Q 007863          448 KVYSIRD-AAANNVKRLAEEFGPDW------AMQHIVPQVLEMINN---PHYLYRMTILQAISLLAPVMGSE------IT  511 (587)
Q Consensus       448 ~~~~vr~-~a~~~l~~l~~~~~~~~------~~~~~~~~l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~------~~  511 (587)
                      ..+..|+ ..+.+++.++..++...      +.+.++..-.++.++   ..+..|......+.++...+-..      ..
T Consensus        85 ~~p~~R~~eVL~l~~~ii~kl~~~~~~~v~~I~~~VFe~Tl~MI~~df~~yPehR~~ff~LL~~i~~~cf~~ll~lp~~q  164 (321)
T d1w9ca_          85 NVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQ  164 (321)
T ss_dssp             SCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHH
T ss_pred             CchhhccHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccchhChHHHHHHHHHHHHHHHHCHHHHHcCCHHH
Confidence            4455553 34556666666665542      122233333344444   36789999999998888755332      23


Q ss_pred             HHhHHHHHHhhcCCCCccHHHHHHHHHHHHHhhhch------HHHHHhHHHHHHH---hcCCCCcc
Q 007863          512 CSQLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SVVEKSIRPCLVE---LSEDPDVD  568 (587)
Q Consensus       512 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~i~~~l~~---l~~d~~~~  568 (587)
                      .+.++..+.-.++++..+|...++.++..+...+..      ..+.....+.+..   .+.|+...
T Consensus       165 f~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk  230 (321)
T d1w9ca_         165 FKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSHT  230 (321)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHChhHH
Confidence            566777777788999999999999999888765533      1333334444444   45666543

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.37  E-value=9.3  Score=28.35  Aligned_cols=97  Identities=12%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             cCCCchHHHHHHHHHHHHHHHHhChhhhhhchHHHHHhhhcCCccHHHHHHHHHHHHhhcccChHHH----HHhHHHHHH
Q 007863          445 LKDKVYSIRDAAANNVKRLAEEFGPDWAMQHIVPQVLEMINNPHYLYRMTILQAISLLAPVMGSEIT----CSQLLPVVI  520 (587)
Q Consensus       445 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~  520 (587)
                      +.+++|..-...+..+..    - .+ -....+..+.+.+.+++..+...|+..+..+..++|..+.    ...++..+.
T Consensus        15 l~~~dw~~ileicD~In~----~-~~-~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~   88 (151)
T d1juqa_          15 NRQEDWEYIIGFCDQINK----E-LE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI   88 (151)
T ss_dssp             CSSCCHHHHHHHHHHHHH----S-TT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhc----C-Cc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHH
Confidence            456777665555544431    1 11 1245666677778889999999999999999999887632    344666666


Q ss_pred             hhcCC------CCccHHHHHHHHHHHHHhhhch
Q 007863          521 NASKD------RVPNIKFNVAKVLQSLIPIVDQ  547 (587)
Q Consensus       521 ~~l~d------~~~~vR~~a~~~l~~l~~~~~~  547 (587)
                      +++..      .+..||..++..+..+...++.
T Consensus        89 kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~~  121 (151)
T d1juqa_          89 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE  121 (151)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHcccCCCCcccHHHHHHHHHHHHHHHHHccc
Confidence            66543      3567999999999999887754