Citrus Sinensis ID: 007865

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------

MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHAKKVDSSPSLNAISDIWTMASLSQDSNNHGIDQFQSQQN

cEEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccccEEEEccccccccccccccEEEEEccccccccccccccEEEEEccccccHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEcccEEEEEEEEEcccccEEEEEcccEEccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccEEcccccccccccccHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccc

cEEEEcccEEEEEEEEcccccccccHHHHccccccccccHHHccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEcccHHHHHHHcccEEEEEccEccccccccEEEEEEEcccccEEEEEHHHHccccHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEcccccEEEEEEEEccccEEEEEEEcccccEEEEEEHHEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccc

mrftvsngVWVISHINFehnhelakpeERQFLRSCRKIFeasggvdvgrrrtkplsylgndfggdrnvQFAKKDmgnylpremgnmmepgdvqGLLNYFrrkkcedpsfFYAVQVNQLNQATNFfwrdgrskldydcfgdvvsfdatfrlnkynlicapfvgvnhhwkNMLFGCAFLLDESTHSYVWLFESFLesmgntqpktiftNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCfyechdetefQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLvfnsdtfsanidsvqrsdsidTVFHQVSTKRMDVISFVQHFEEKTKEMHLdeleddhfckhvvPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHalkafdfnnltqipVQYILKRWTKEAKKGIVVRVsnerhglssntvKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEIVNRLAHakkvdsspslnaisDIWTmaslsqdsnnhgidQFQSQQN

MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIfeasggvdvgrrrtkplsylgndfggdrnvqfAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSanidsvqrsdsIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALkafdfnnltqIPVQYILKRWTKEAKKGIVVrvsnerhglssntvkSVQSLRLSELMHMGSNVYSiaslsdsgTKIVKEKLAEAMELLEKDEEIVNRLAhakkvdsspslNAISDIWTMASLSQDSNNHGIDQFQSQQN

MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVkeklaeamellekdeeIVNRLAHAKKVDSSPSLNAISDIWTMASLSQDSNNHGIDQFQSQQN

***TVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYL**********GDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVSN********************LMHMGSNVYSIAS*******I************************************ISDIWT*********************

*RFTVSNGVWVISHINFEHNHELAKPEERQFLRSC*K****************P*SYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIV***************KSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAM******************************************************

MRFTVSNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKK**************SNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLEKDEEI*********************************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		587	2.2.26 [Sep-21-2011]
Q9SZL8		788	Protein FAR1-RELATED SEQU	yes	no	0.880	0.656	0.332	3e-81
Q9ZVC9		851	Protein FAR1-RELATED SEQU	no	no	0.856	0.591	0.308	1e-68
Q9SWG3		827	Protein FAR-RED IMPAIRED	no	no	0.805	0.571	0.311	1e-68
Q9LIE5		839	Protein FAR-RED ELONGATED	no	no	0.843	0.589	0.299	6e-67
Q6NQJ7		732	Protein FAR1-RELATED SEQU	no	no	0.877	0.703	0.296	2e-62
Q9M8J3		764	Protein FAR1-RELATED SEQU	no	no	0.790	0.607	0.280	2e-59
Q9SZL7		545	Protein FAR1-RELATED SEQU	no	no	0.676	0.728	0.299	2e-59
Q3E7I5		788	Protein FAR1-RELATED SEQU	no	no	0.800	0.596	0.288	2e-57
Q9SSQ4		703	Protein FAR1-RELATED SEQU	no	no	0.657	0.549	0.302	1e-51
Q3EBQ3		807	Protein FAR1-RELATED SEQU	no	no	0.751	0.546	0.285	3e-48

>sp\|Q9SZL8\|FRS5_ARATH Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1	Back alignment and function desciption

 Score =  303 bits (775), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 179/538 (33%), Positives = 288/538 (53%), Gaps = 21/538 (3%)

Query: 7   NGVWVISHINFEHNHELAKPEERQFLRSCRKI----------FEASGGVDVGRRRTKPLS 56
           +G W++S    +HNHEL  P++   LRS R+I           +A+G   +G RR   +S
Sbjct: 161 SGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAG---MGPRRI--MS 215

Query: 57  YLGNDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVN 116
            L  ++GG   V F + D  NY+       +E G++Q LL+Y R+   ++P+FFY+VQ +
Sbjct: 216 ALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGS 274

Query: 117 QLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAF 176
           +     N FW D ++ +D+  FGD V+FD T+R N+Y L  APF GVNHH + +LFGCAF
Sbjct: 275 EDQSVGNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAF 334

Query: 177 LLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDA 236
           +++E+  S+VWLF ++L +M    P +I T+ +  +  AI  VF   RHR    HI+K  
Sbjct: 335 IINETEASFVWLFNTWLAAMSAHPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKC 394

Query: 237 RRNLANQF-ANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKW 295
           +  L++ F  +  F    +KC        +F+  W  +++K+ L DH WL+ +YS R +W
Sbjct: 395 QEKLSHVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQW 454

Query: 296 CLVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHF 355
             V+  DTF A++    RSDSI++ F        ++  F + +E+  +     E++ D+ 
Sbjct: 455 VPVYLRDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYEKALESRLEKEVKADYD 514

Query: 356 CKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEG 415
             +  P L+  + +   A  +YT K+F  F+ EL+G +     +   DG++  Y+  + G
Sbjct: 515 TMNSPPVLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYG 574

Query: 416 Q-QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAK 474
           +  K   + +N+     +CSC++FE  GI+CRH L  F   NL  +P  YILKRWT+ AK
Sbjct: 575 EAHKAHFVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAK 634

Query: 475 KGIVVRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEA 532
             ++    N  H   +N ++S  ++R + L H  SN    A  S     +    L EA
Sbjct: 635 SSVIFDDYN-LHAY-ANYLES-HTVRYNTLRHKASNFVQEAGKSLYTCDVAVVALQEA 689

Putative transcription activator involved in regulating light control of development.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9ZVC9\|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2	Back alignment and function description

>sp\|Q9SWG3\|FAR1_ARATH Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1	Back alignment and function description

>sp\|Q9LIE5\|FHY3_ARATH Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1	Back alignment and function description

>sp\|Q6NQJ7\|FRS4_ARATH Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=2	Back alignment and function description

>sp\|Q9M8J3\|FRS7_ARATH Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1	Back alignment and function description

>sp\|Q9SZL7\|FRS9_ARATH Protein FAR1-RELATED SEQUENCE 9 OS=Arabidopsis thaliana GN=FRS9 PE=2 SV=2	Back alignment and function description

>sp\|Q3E7I5\|FRS12_ARATH Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1	Back alignment and function description

>sp\|Q9SSQ4\|FRS6_ARATH Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1	Back alignment and function description

>sp\|Q3EBQ3\|FRS2_ARATH Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		587
357149440		696	PREDICTED: protein FAR1-RELATED SEQUENCE	0.776	0.655	0.417	1e-107
218197656		819	hypothetical protein OsI_21811 [Oryza sa	0.812	0.582	0.416	1e-105
222635024		792	hypothetical protein OsJ_20251 [Oryza sa	0.812	0.602	0.416	1e-105
115466626		780	Os06g0166100 [Oryza sativa Japonica Grou	0.812	0.611	0.416	1e-105
242050362		781	hypothetical protein SORBIDRAFT_02g03456	0.812	0.610	0.404	1e-103
357118619		761	PREDICTED: protein FAR1-RELATED SEQUENCE	0.810	0.625	0.412	1e-102
326487428		773	predicted protein [Hordeum vulgare subsp	0.809	0.614	0.413	1e-102
326498635		777	predicted protein [Hordeum vulgare subsp	0.805	0.608	0.406	1e-101
414886878		690	TPA: FAR1-domain family sequence [Zea ma	0.810	0.689	0.4	1e-101
414886879		779	TPA: FAR1-domain family sequence isoform	0.810	0.611	0.4	1e-101

>gi\|357149440\|ref\|XP_003575113.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 7-like [Brachypodium distachyon]	Back alignment and taxonomy information

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/482 (41%), Positives = 289/482 (59%), Gaps = 26/482 (5%)

Query: 1   MRFTVSN-GVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLG 59
           +RF V++ G W +  +  +HNH LA PEER  LRS R +           ++  P SY  
Sbjct: 164 VRFRVNDHGEWKVIRLVSDHNHNLASPEERHLLRSARSLIAGRSSSVDSSKQDLPHSY-- 221

Query: 60  NDFGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLN 119
                            N +P+        GD+QGL+N+ + +  ED  F++ VQ+++  
Sbjct: 222 -----------------NGIPKSPA--AGTGDLQGLVNHLKNRANEDGMFYWDVQIDRGG 262

Query: 120 QATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLD 179
           + TNFFWRDGRS++DYDCFGDVV FD+T+RLN+ NLICAPFVGVNHHW+  ++GCA L D
Sbjct: 263 RMTNFFWRDGRSRIDYDCFGDVVVFDSTYRLNRQNLICAPFVGVNHHWQTAIYGCALLAD 322

Query: 180 ESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN 239
           ES  S+VWLF+SFLE+MGN  P++IFTN+++ MSKAIE VF  T HR++  HI K+A   
Sbjct: 323 ESLSSFVWLFKSFLEAMGNRHPRSIFTNQDQVMSKAIEEVFPSTCHRIAHWHIQKNAASR 382

Query: 240 LANQFANLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVF 299
           L     +  F K   KC   C  E EF+ +W +M+ +F L D+ WL KLY L+ KW   F
Sbjct: 383 LGALNGSKAFNKMFKKCMQGCDSEAEFEETWAEMLREFKLQDNKWLNKLYKLKQKWSSAF 442

Query: 300 NSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHV 359
           N  TF   +++  + DS+  +F  ++ K   + + +   ++ T++    EL++D  C   
Sbjct: 443 NKCTFDGGVENEPQCDSLSNIFSCIADKLTSLSAIIVAVDKLTEDWREKELDEDTRCCQK 502

Query: 360 VPRLQVWNG-ILNHAVYVYTSKIFNFFEMELL-GCMGVRMKEV-CKDGEVCIYEAIEEGQ 416
            P   + +  ILNHA  +YT +I+  FE   L GC   + KE+ C+DG    +E   +G+
Sbjct: 503 PPACIIKHSDILNHAAKLYTHRIYKLFETYFLDGCGATKFKELRCEDGNTYRFEMTMQGR 562

Query: 417 -QKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKK 475
             +VC ++ NLST  ++CSC  FE MG+LC HALKA    N+ +IP  YILKRWTK+AK+
Sbjct: 563 GSRVCTVHLNLSTMQLTCSCSKFETMGLLCPHALKALSIKNVCKIPETYILKRWTKDAKQ 622

Query: 476 GI 477
            +
Sbjct: 623 WV 624

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|218197656\|gb\|EEC80083.1\| hypothetical protein OsI_21811 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|222635024\|gb\|EEE65156.1\| hypothetical protein OsJ_20251 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|115466626\|ref\|NP_001056912.1\| Os06g0166100 [Oryza sativa Japonica Group] gi\|55296036\|dbj\|BAD67598.1\| putative far-red impaired response protein [Oryza sativa Japonica Group] gi\|55296143\|dbj\|BAD67861.1\| putative far-red impaired response protein [Oryza sativa Japonica Group] gi\|113594952\|dbj\|BAF18826.1\| Os06g0166100 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|242050362\|ref\|XP_002462925.1\| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor] gi\|241926302\|gb\|EER99446.1\| hypothetical protein SORBIDRAFT_02g034560 [Sorghum bicolor]	Back alignment and taxonomy information

>gi\|357118619\|ref\|XP_003561049.1\| PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Brachypodium distachyon]	Back alignment and taxonomy information

>gi\|326487428\|dbj\|BAJ89698.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|326498635\|dbj\|BAK02303.1\| predicted protein [Hordeum vulgare subsp. vulgare]	Back alignment and taxonomy information

>gi\|414886878\|tpg\|DAA62892.1\| TPA: FAR1-domain family sequence [Zea mays]	Back alignment and taxonomy information

>gi\|414886879\|tpg\|DAA62893.1\| TPA: FAR1-domain family sequence isoform 1 [Zea mays] gi\|414886880\|tpg\|DAA62894.1\| TPA: FAR1-domain family sequence isoform 2 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		587
TAIR\|locus:2121060		788	FRS5 "FAR1-related sequence 5"	0.863	0.643	0.340	1.3e-77
TAIR\|locus:2129665		827	FAR1 "FAR-RED IMPAIRED RESPONS	0.802	0.569	0.315	1.2e-67
TAIR\|locus:2059304		851	FRS3 "FAR1-related sequence 3"	0.856	0.591	0.315	9.4e-66
TAIR\|locus:2090394		839	FHY3 "far-red elongated hypoco	0.804	0.562	0.3	1.6e-65
TAIR\|locus:2014639		732	FRS4 "FAR1-related sequence 4"	0.812	0.651	0.303	1.6e-63
TAIR\|locus:2082420		764	FRS7 "FAR1-related sequence 7"	0.735	0.565	0.297	2.6e-63
TAIR\|locus:2144930		788	FRS12 "FAR1-related sequence 1	0.780	0.581	0.286	8.8e-61
TAIR\|locus:2121003		545	FRS9 "FAR1-related sequence 9"	0.724	0.779	0.290	1.1e-55
TAIR\|locus:2035144		703	FRS6 "FAR1-related sequence 6"	0.783	0.654	0.287	2.1e-52
TAIR\|locus:2062606		807	FRS2 "FAR1-related sequence 2"	0.724	0.526	0.296	2.3e-52

TAIR\|locus:2121060 FRS5 "FAR1-related sequence 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 177/520 (34%), Positives = 283/520 (54%)

Query:     7 NGVWVISHINFEHNHELAKPEERQFLRSCRKIF-EASGGVDV----GRRRTKPLSYLGND 61
             +G W++S    +HNHEL  P++   LRS R+I   A   +D     G    + +S L  +
Sbjct:   161 SGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKE 220

Query:    62 FGGDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQA 121
             +GG   V F + D  NY+       +E G++Q LL+Y R+   ++P+FFY+VQ ++    
Sbjct:   221 YGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSV 279

Query:   122 TNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDES 181
              N FW D ++ +D+  FGD V+FD T+R N+Y L  APF GVNHH + +LFGCAF+++E+
Sbjct:   280 GNVFWADPKAIMDFTHFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPILFGCAFIINET 339

Query:   182 THSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLA 241
               S+VWLF ++L +M    P +I T+ +  +  AI  VF   RHR    HI+K  +  L+
Sbjct:   340 EASFVWLFNTWLAAMSAHPPVSITTDHDAVIRAAIMHVFPGARHRFCKWHILKKCQEKLS 399

Query:   242 NQFA-NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFN 300
             + F  +  F    +KC        +F+  W  +++K+ L DH WL+ +YS R +W  V+ 
Sbjct:   400 HVFLKHPSFESDFHKCVNLTESVEDFERCWFSLLDKYELRDHEWLQAIYSDRRQWVPVYL 459

Query:   301 SDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLD-ELEDDHFCKHV 359
              DTF A++    RSDSI++ F        ++  F + +E K  E  L+ E++ D+   + 
Sbjct:   460 RDTFFADMSLTHRSDSINSYFDGYINASTNLSQFFKLYE-KALESRLEKEVKADYDTMNS 518

Query:   360 VPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQ-QK 418
              P L+  + +   A  +YT K+F  F+ EL+G +     +   DG++  Y+  + G+  K
Sbjct:   519 PPVLKTPSPMEKQASELYTRKLFMRFQEELVGTLTFMASKADDDGDLVTYQVAKYGEAHK 578

Query:   419 VCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIV 478
                + +N+     +CSC++FE  GI+CRH L  F   NL  +P  YILKRWT+ AK  ++
Sbjct:   579 AHFVKFNVLEMRANCSCQMFEFSGIICRHILAVFRVTNLLTLPPYYILKRWTRNAKSSVI 638

Query:   479 VRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLS 518
                 N  H  + N ++S  ++R + L H  SN    A  S
Sbjct:   639 FDDYN-LHAYA-NYLES-HTVRYNTLRHKASNFVQEAGKS 675

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009639 "response to red or far red light" evidence=ISS

TAIR\|locus:2129665 FAR1 "FAR-RED IMPAIRED RESPONSE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2059304 FRS3 "FAR1-related sequence 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2090394 FHY3 "far-red elongated hypocotyls 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2014639 FRS4 "FAR1-related sequence 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082420 FRS7 "FAR1-related sequence 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2144930 FRS12 "FAR1-related sequence 12" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121003 FRS9 "FAR1-related sequence 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2035144 FRS6 "FAR1-related sequence 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2062606 FRS2 "FAR1-related sequence 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		587
PLN03097		846	PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTY	2e-84
pfam10551		88	pfam10551, MULE, MULE transposase domain	6e-19
smart00575		28	smart00575, ZnF_PMZ, plant mutator transposase zin	2e-04
pfam04434		38	pfam04434, SWIM, SWIM zinc finger	2e-04

>gnl\|CDD\|178645 PLN03097, FHY3, Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

 Score =  280 bits (718), Expect = 2e-84
 Identities = 173/533 (32%), Positives = 259/533 (48%), Gaps = 35/533 (6%)

Query: 6   SNGVWVISHINFEHNHEL--AKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFG 63
            +G WVI     EHNHEL  A+    Q     RK++ A                +   F 
Sbjct: 171 PDGKWVIHSFVKEHNHELLPAQAVSEQ----TRKMYAA----------------MARQFA 210

Query: 64  GDRNVQFAKKDMGNYLPREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATN 123
             +NV   K D  +   +     +E GD + LL++F + +  + +FFYAV + +  +  N
Sbjct: 211 EYKNVVGLKNDSKSSFDKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKN 270

Query: 124 FFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAPFVGVNHHWKNMLFGCAFLLDESTH 183
            FW D +S+ DY  F DVVSFD T+  NKY +  A FVGVN H++ ML GCA + DES  
Sbjct: 271 LFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAA 330

Query: 184 SYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRNLANQ 243
           +Y WL +++L +MG   PK I T++++AM   I  VF    H     HI+     NL   
Sbjct: 331 TYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQV 390

Query: 244 FA-NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSD 302
              +  FM    KC Y    E EF   W  ++++F L +  W++ LY  R +W   +  D
Sbjct: 391 IKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRD 450

Query: 303 TFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPR 362
            F A + +VQRS+SI+  F +   K+  V  FV+ +E   ++ + +E + D    +  P 
Sbjct: 451 AFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPA 510

Query: 363 LQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMKEVCKDGEVCIYEAIEEGQQKVCKI 422
           L+  + +      VYT  +F  F++E+LG +    K   +D     +   +  + +   +
Sbjct: 511 LKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTV 570

Query: 423 NYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRVS 482
            +N +  ++SC C+LFE  G LCRHAL       L+ IP QYILKRWTK+AK        
Sbjct: 571 TWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAK-------- 622

Query: 483 NERH--GLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAM 533
             RH  G  S  V+S +  R ++L      +   ASLS     I    L EA 
Sbjct: 623 -SRHLLGEESEQVQS-RVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAF 673

Length = 846

>gnl\|CDD\|220806 pfam10551, MULE, MULE transposase domain	Back alignment and domain information

>gnl\|CDD\|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger	Back alignment and domain information

>gnl\|CDD\|218087 pfam04434, SWIM, SWIM zinc finger	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		587
PLN03097		846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551		93	MULE: MULE transposase domain; InterPro: IPR018289	99.88
PF00872		381	Transposase_mut: Transposase, Mutator family; Inte	99.63
COG3328		379	Transposase and inactivated derivatives [DNA repli	98.99
smart00575		28	ZnF_PMZ plant mutator transposase zinc finger.	98.9
PF04434		40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.29
PF01610		249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	97.02
PF13610		140	DDE_Tnp_IS240: DDE domain	93.19
PF00665		120	rve: Integrase core domain; InterPro: IPR001584 In	90.5
PF06782		470	UPF0236: Uncharacterised protein family (UPF0236);	86.2
PF04937		153	DUF659: Protein of unknown function (DUF 659); Int	80.66

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional	Back alignment and domain information

Probab=100.00  E-value=2.9e-120  Score=1010.80  Aligned_cols=511  Identities=32%  Similarity=0.563  Sum_probs=462.9

Q ss_pred             CEEEE-ECCeEEEEEeeCCCCCCCCCCccccccccccccccccCCcccccCCcccceecccccCCCccccccccccCCcc
Q 007865            1 MRFTV-SNGVWVISHINFEHNHELAKPEERQFLRSCRKIFEASGGVDVGRRRTKPLSYLGNDFGGDRNVQFAKKDMGNYL   79 (587)
Q Consensus         1 v~~r~-~~~~w~v~~~~~~HNH~l~~~~~~~~l~s~r~l~~~~~~i~~~~~~~~~~~~l~~~~g~~~~~~~~~~di~N~~   79 (587)
                      |++++ .+|+|+|+.|+.+|||||.++..... + .|++                +..+....++..+++.++.|..|+.
T Consensus       165 m~Vk~~~~gkW~V~~fv~eHNH~L~p~~~~~~-~-~r~~----------------~~~~~~~~~~~~~v~~~~~d~~~~~  226 (846)
T PLN03097        165 MHVKRRPDGKWVIHSFVKEHNHELLPAQAVSE-Q-TRKM----------------YAAMARQFAEYKNVVGLKNDSKSSF  226 (846)
T ss_pred             EEEEEcCCCeEEEEEEecCCCCCCCCccccch-h-hhhh----------------HHHHHhhhhccccccccchhhcchh
Confidence            35666 78999999999999999997653220 0 0111                1122234456667778888999998


Q ss_pred             hhhhhccCCCCcHHHHHHHHhhhccCCCCcEEEEEeccccceeeeEecccccHHHHHhcCCeeeeccccccccCCceeeE
Q 007865           80 PREMGNMMEPGDVQGLLNYFRRKKCEDPSFFYAVQVNQLNQATNFFWRDGRSKLDYDCFGDVVSFDATFRLNKYNLICAP  159 (587)
Q Consensus        80 ~~~r~~~~~~~d~~~l~~~l~~~~~~np~f~~~~~~d~~~~~~~ifw~~~~~~~~~~~f~dvi~~D~Ty~tn~y~~pl~~  159 (587)
                      .+.|+..+..||+++|++||+++|.+||+|||++++|++|+|+||||+|++|+.+|.+|||||+|||||+||+|+|||++
T Consensus       227 ~~~r~~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y~~FGDvV~fDTTY~tN~y~~Pfa~  306 (846)
T PLN03097        227 DKGRNLGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDYGNFSDVVSFDTTYVRNKYKMPLAL  306 (846)
T ss_pred             hHHHhhhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHHHhcCCEEEEeceeeccccCcEEEE
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeEEeeeecccCccchHHHHHHHHHHHhCCCCCcEEeccccHHHHHHHHHHcccCccccccchHHHHHHHH
Q 007865          160 FVGVNHHWKNMLFGCAFLLDESTHSYVWLFESFLESMGNTQPKTIFTNENEAMSKAIETVFMKTRHRLSTGHIVKDARRN  239 (587)
Q Consensus       160 ~~Gvn~~~~~~~~g~al~~~Et~es~~w~l~~~~~~m~~~~P~~iitD~~~a~~~Ai~~vfP~~~h~~C~~Hi~~n~~~~  239 (587)
                      |+|||||+|+++|||||+.+|+.|||.|||++|+++|+|+.|++||||+|.||++||++|||+|.|++|.|||++|+.++
T Consensus       307 FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~  386 (846)
T PLN03097        307 FVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQAPKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSEN  386 (846)
T ss_pred             EEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCCCCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccC-cHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCchHHHHHHHhhhccccccccccccccccccCCCCcchh
Q 007865          240 LANQFA-NLEFMKYLNKCFYECHDETEFQVSWDDMINKFSLGDHLWLKKLYSLRDKWCLVFNSDTFSANIDSVQRSDSID  318 (587)
Q Consensus       240 l~~~~~-~~~~~~~~~~~v~~~~t~~eFe~~w~~l~~~~~l~~~~wl~~l~~~r~~W~~ay~~~~f~~g~~tt~r~Es~n  318 (587)
                      |+..+. .+.|..+|.+|||++.+++|||..|..|+++|+|++|+||+.||+.|++||++|+++.|++||+||+|+||+|
T Consensus       387 L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~N  466 (846)
T PLN03097        387 LGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESIN  466 (846)
T ss_pred             hhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHHhcccccCCcccccccccHH
Confidence            998753 4689999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCCCCCHHhHHHHHHHHHHhhhhhhhhhhhcccCCcceeehhhhHHHHHHHhchHHHHHHHHHHHHhccccceE
Q 007865          319 TVFHQVSTKRMDVISFVQHFEEKTKEMHLDELEDDHFCKHVVPRLQVWNGILNHAVYVYTSKIFNFFEMELLGCMGVRMK  398 (587)
Q Consensus       319 ~~lK~~~~~~~~l~~f~~~~~~~~~~~~~~E~~~d~~s~~~~p~~~~~~~~e~qa~~vyT~~if~~fq~el~~~~~~~~~  398 (587)
                      ++||+|++++++|..|+++|+++++.++++|+++|+.+.++.|.+++.+|||+||+++|||+||++||+|+..++++.+.
T Consensus       467 s~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~  546 (846)
T PLN03097        467 AFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPK  546 (846)
T ss_pred             HHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             EEeeCCcEEEEEEEEecceeeEEEEEeCCCCceeeecccccccCcchhhHHHHhhhCCccccCccccccccccccccCcc
Q 007865          399 EVCKDGEVCIYEAIEEGQQKVCKINYNLSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIV  478 (587)
Q Consensus       399 ~~~~~~~~y~v~~~~~~~~~~~~V~~~~~~~~~~CsC~~fe~~GipC~Hil~Vl~~~~v~~iP~~yil~RWtk~ak~~~~  478 (587)
                      ....++..+++.+...+..+.|.|.+|.+...++|+|++||+.||||+|||+||.++||.+||++|||+||||+||...+
T Consensus       547 ~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~~~  626 (846)
T PLN03097        547 MESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSRHL  626 (846)
T ss_pred             eeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcccCchhhhhhhchhhhhhccc
Confidence            55444554444433333457899999999999999999999999999999999999999999999999999999998766


Q ss_pred             cccCCcccCCCCCccccchHHHHHHHHHHHHHHHHHHcCCHhhHHHHHHHHHHHHHHHH
Q 007865          479 VRVSNERHGLSSNTVKSVQSLRLSELMHMGSNVYSIASLSDSGTKIVKEKLAEAMELLE  537 (587)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~ry~~l~~~~~~~~~~a~~s~e~~~~~~~~l~~~~~~~~  537 (587)
                      .+....        ...+.+.||+.||++++++|++|+.|+|.|..|+++|+++...+.
T Consensus       627 ~~~~~~--------~~~~~~~Ryn~L~r~a~kla~~as~S~E~y~~a~~~L~e~~~~~~  677 (846)
T PLN03097        627 LGEESE--------QVQSRVQRYNDLCQRALKLSEEASLSQESYNIAFRALEEAFGNCI  677 (846)
T ss_pred             Cccccc--------cccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            542211        123567899999999999999999999999999999999988774

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]	Back alignment and domain information

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00575 ZnF_PMZ plant mutator transposase zinc finger	Back alignment and domain information

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element	Back alignment and domain information

>PF13610 DDE_Tnp_IS240: DDE domain	Back alignment and domain information

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known	Back alignment and domain information

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function	Back alignment and domain information

>PF04937 DUF659: Protein of unknown function (DUF 659); InterPro: IPR007021 These are transposase-like proteins with no known function	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		587
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
1qzv_F		154	Plant photosystem I: subunit PSAF; photosynthesis,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 74/440 (16%), Positives = 150/440 (34%), Gaps = 96/440 (21%)

Query: 175 AFLLDESTHSYVWLFESF-LESMGNTQPKTIFTNENEAMSKAIETVFMK-TRHRLSTGHI 232
            F+ +    +Y +L      E    +    ++  + + +    + VF K    RL     
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAKYNVSRLQPYLK 139

Query: 233 VKDARRNL-ANQFANLEFMKYLNK-------C-FYECHDETEFQVSWDDMINKFSLGDHL 283
           ++ A   L   +   ++ +    K       C  Y+   + +F++ W ++ N  S    L
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 284 -WLKKLYSLRDK-WC-LVFNSDTFSANIDSVQRSDSIDTVFHQVSTKRMDVISFVQHFEE 340
             L+KL    D  W     +S      I S+Q    +  +      +   ++        
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLV-------- 249

Query: 341 KTKEMHLDELED----DHF---CKHVV-PR-LQVWNGILN----HAVYVYTSKIFNFFE- 386
                 L  +++    + F   CK ++  R  QV + +      H    + S      E 
Sbjct: 250 ------LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 387 MELLG-CMGVRMKEVCKDGEVC---------IYEAIEEG--------------QQKVCKI 422
             LL   +  R +++ +  EV          I E+I +G                 + + 
Sbjct: 304 KSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 423 NYN-LSTQDISCSCKLFERMGILCRHALKAFDFNNLTQIPVQYILKRWTKEAKKGIVVRV 481
           + N L   +     K+F+R+ +          F     IP   +   W  +  K  V+ V
Sbjct: 362 SLNVLEPAEYR---KMFDRLSV----------FPPSAHIPTILLSLIWF-DVIKSDVMVV 407

Query: 482 SNERHGLS------SNTVKSVQSLRLSELMHMGSNVYSI-ASLSDSGTKIVKEKLAEAME 534
            N+ H  S        +  S+ S+ L   + +  N Y++  S+ D    I K   ++ + 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALHRSIVDH-YNIPKTFDSDDLI 465

Query: 535 LLEKDEEIVNRLA-HAKKVD 553
               D+   + +  H K ++
Sbjct: 466 PPYLDQYFYSHIGHHLKNIE 485

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00