Citrus Sinensis ID: 007876

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
MASGSLVGQSDAGEKQDKFYSRKNQSKSQNPKSVPPQYNQQPYSKKILASINTDDNSIPVASDDSSSQPGAHNRREPSHGNAFPGYAKFDSFVKISFDLNNREEVRALKRKLASELEQVTSLVKRLDATQTQLSKIVHRNAGTVSVNKNGNNQGKSVDKKKMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSKMGRKSDFATPIPKTVPAPPPPVHTPTLGPPLPVHSPTSAHPVPVHTPTPVHTPPPPSGPLEARTLERVDSVPIPDDLKRKATDLAHQDTILVPKKPKANNPDKRDMTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKILSKNRGKAEVAHQATAEACHNIQDSNMEPIIAEAPKETEAVEKIVSTSSPVLEEKHGDKANESSSSSGSSSDSGSSSSDSSTGSSCGYRSPADN
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccc
cccEEEEcccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHcccccHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHHcccHHHHHHHHHHHccccccccccccEEEEEHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccc
masgslvgqsdagekqdkfysrknqsksqnpksvppqynqqpysKKILASintddnsipvasddsssqpgahnrrepshgnafpgyakfdsFVKISFDLNNREEVRALKRKLASELEQVTSLVKRLDATQTQLSKIvhrnagtvsvnkngnnqgksvdkkkmapktnqfhknldvvgfeklnpmesnkklksntkgnelvsYKNLGRLFQSCRNLLERLMKHKfgwvfnkpvdvkglglkDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITfsnamlynpkgqdvHIMAEELSKIFEDTWKKIEAEYNfsrqskmgrksdfatpipktvpappppvhtptlgpplpvhsptsahpvpvhtptpvhtppppsgpleartlervdsvpipddlkrkatdlahqdtilvpkkpkannpdkrdmtYEEKQRLSMnlqelpsdklDHVVQIIKkrnpvlsqqddeievdidtfdpetLWELDRFVTNYNKILSKNRGKAEVAHQATAEAChniqdsnmepiiaeapkeTEAVEKIVStsspvleekhgdkanesssssgsssdsgssssdsstgsscgyrspadn
masgslvgqsdagekqdkfysrknqsksqnpksvppqynqqPYSKKILASINTDDNSIPVASDDSSSQPGAHNRREPSHGNAFPGYAKFDSFVKISFDLNNREEVRALKRKLASELEQVTSLVKrldatqtqlskivhrnagtvsvnkngnnqgksvdkkkmapktnqfhknldvvgfeklnpmesnkklksntkgnelvsYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYnfsrqskmgrksDFATPIPKTVPAPPPPVHTPTLGPPLPVHSPTSAHPVPVHTPTPVHTPPPPSGPLEARTLERVDSVPIPDDLKRKATdlahqdtilvpkkpkannpdkRDMTYEEKQRLSmnlqelpsdkLDHVVQIIKkrnpvlsqqddeieVDIDTFDPETLWELDRFVTNYNKILSKNRGKAEVAHQATAEACHNIQDSNMEPIIAEAPKETEAVEKIVStsspvleekhgdkanesssssgsssdsgssssdsstgsscgyrspadn
MASGSLVGQSDAGEKQDKFYSRKNQSKSQNPKSVPPQYNQQPYSKKILASINTDDNSIPVASDDSSSQPGAHNRREPSHGNAFPGYAKFDSFVKISFDLNNREEVRALKRKLASELEQVTSLVKRLDATQTQLSKIVHRNAGTVSVNKNGNNQGKSVDKKKMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSKMGRKSDFAtpipktvpappppvhtptlgpplpvHSPTSAhpvpvhtptpvhtppppSGPLEARTLERVDSVPIPDDLKRKATDLAHQDTILVPKKPKANNPDKRDMTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKILSKNRGKAEVAHQATAEACHNIQDSNMEPIIAEAPKETEAVEKIVSTSSPVLEEKHGDKANEsssssgsssdsgssssdsstgssCGYRSPADN
**********************************************************************************FPGYAKFDSFVKISFDLNNREEVRALKRKL***L*QVTSLVKRLD********I**************************************************************LVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYK***************************IMAEELSKIFEDTWKKIEAEY**************************************************************************************************************************************HVVQIIKKRNPVLS**DDEIEVDIDTFDPETLWELDRFVTNYNKILSKN******************************************************************************************
*****************************************************************************************************************************************************************************************************************QSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE************************************************************************************************************************************************************VDIDTFDPETLWELDRFV****************************************************************************************************
**************************************NQQPYSKKILASINTDDNSIP******************SHGNAFPGYAKFDSFVKISFDLNNREEVRALKRKLASELEQVTSLVKRLDATQTQLSKIVHRNAGTVSVNKNGNNQGKSVDKKKMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSKMGRKSDFATPIPKTVPAPPPPVHTPTLGPPLPVHSPTSAHPVPVHTPTPVHTPPPPSGPLEARTLERVDSVPIPDDLKRKATDLAHQDTILVPKKPKANNPDKRDMTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKILSK***********TAEACHNIQDSNMEPIIAEAPKETEAVEKIVSTSSP********************************************
**************************************************************************************AKFDSFVKISFDLNNREEVRALKRKLASELEQVTSLV******************************************************************************YKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIE******************************************************************************************************************DMTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKILSKN******************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASGSLVGQSDAGEKQDKFYSRKNQSKSQNPKSVPPQYNQQPYSKKILASINTDDNSIPVASDDSSSQPGAHNRREPSHGNAFPGYAKFDSFVKISFDLNNREEVRALKRKLASELEQVTSLVKRLDATQTQLSKIVHRNAGTVSVNKNGNNQGKSVDKKKMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSKMGRKSDFATPIPKTVPAPPPPVHTPTLGPPLPVHSPTSAHPVPVHTPTPVHTPPPPSGPLEARTLERVDSVPIPDDLKRKATDLAHQDTILVPKKPKANNPDKRDMTYEEKQRLSMNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKILSKNRGKAEVAHQATAEACHNIQDSNMEPIIAEAPKETEAVEKIVSTSSPVLEEKHGDKANESSSSSGSSSDSGSSSSDSSTGSSCGYRSPADN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query586 2.2.26 [Sep-21-2011]
Q9LNC4766 Transcription factor GTE4 yes no 0.581 0.445 0.507 4e-85
Q9S7T1461 Transcription factor GTE3 no no 0.665 0.845 0.403 8e-74
Q8H1D7487 Transcription factor GTE5 no no 0.660 0.794 0.396 4e-71
Q93YS6 688 Transcription factor GTE9 no no 0.351 0.299 0.333 2e-34
Q9LK27 813 Transcription factor GTE8 no no 0.372 0.268 0.342 3e-34
Q9LXA7581 Transcription factor GTE2 no no 0.348 0.351 0.387 4e-34
Q7Y214590 Transcription factor GTE7 no no 0.358 0.355 0.383 1e-32
Q9FGW9 1061 Transcription factor GTE1 no no 0.554 0.306 0.293 3e-30
Q93ZB7 620 Transcription factor GTE1 no no 0.387 0.366 0.311 4e-29
Q9LS28494 Transcription factor GTE1 no no 0.167 0.198 0.5 1e-24
>sp|Q9LNC4|GTE4_ARATH Transcription factor GTE4 OS=Arabidopsis thaliana GN=GTE4 PE=2 SV=1 Back     alignment and function desciption
 Score =  315 bits (808), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 194/382 (50%), Positives = 242/382 (63%), Gaps = 41/382 (10%)

Query: 140 NAGTVSVNKNGNNQGKSVDKKKMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNT--KGN 197
           N  ++SV +N     + V+K+K  PK NQF++N + +  +KL P ESNKK KS++  +G 
Sbjct: 350 NQLSISVLENTQGVNEHVEKEKRTPKANQFYRNSEFLLGDKLPPAESNKKSKSSSKKQGG 409

Query: 198 ELVSYKNLG-RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVK 256
           ++      G ++F++C  LLERLMKHK GWVFN PVDVKGLGL DYYTII+HPMDLGT+K
Sbjct: 410 DVGHGFGAGTKVFKNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIK 469

Query: 257 ARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFS 316
           + L KNLYK+PREFAEDVR+TF NAM YNP+GQDVH+MA  L +IFE+ W  IEA+YN  
Sbjct: 470 SALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYN-- 527

Query: 317 RQSKMGRKSDFATPIPKTVPAPPPPVHTPTLGPPLPVHSPTSAHPVPVHTPTPVHTPPPP 376
                 R+  F T     +P    P     LGP                      T PPP
Sbjct: 528 ------REMRFVTGYEMNLPT---PTMRSRLGP----------------------TMPPP 556

Query: 377 SGPLEAR-TLERVDSVPIPDDLKRKATDLAHQDTILVP--KKPKANNPDKRDMTYEEKQR 433
             P+  R T++R D            T  +   +   P  KKPKAN P+KRDMTYEEKQ+
Sbjct: 557 --PINVRNTIDRADWSNRQPTTTPGRTPTSATPSGRTPALKKPKANEPNKRDMTYEEKQK 614

Query: 434 LSMNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKIL 493
           LS +LQ LP DKLD +VQI+ KRN  +  +D+EIEVDID+ DPETLWELDRFVTNY K L
Sbjct: 615 LSGHLQNLPPDKLDAIVQIVNKRNTAVKLRDEEIEVDIDSVDPETLWELDRFVTNYKKGL 674

Query: 494 SKNRGKAEVAHQATAEACHNIQ 515
           SK + KAE+A QA AEA  N Q
Sbjct: 675 SKKKRKAELAIQARAEAERNSQ 696
Involved in the activation and maintenance of cell division in the meristems and by this controls cell numbers in differentiated organs. Its action in cell cycle regulation may be directed through the RB-E2F pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9S7T1|GTE3_ARATH Transcription factor GTE3, chloroplastic OS=Arabidopsis thaliana GN=GTE3 PE=1 SV=1 Back     alignment and function description
>sp|Q8H1D7|GTE5_ARATH Transcription factor GTE5, chloroplastic OS=Arabidopsis thaliana GN=GTE5 PE=1 SV=1 Back     alignment and function description
>sp|Q93YS6|GTE9_ARATH Transcription factor GTE9 OS=Arabidopsis thaliana GN=GTE9 PE=1 SV=1 Back     alignment and function description
>sp|Q9LK27|GTE8_ARATH Transcription factor GTE8 OS=Arabidopsis thaliana GN=GTE8 PE=2 SV=2 Back     alignment and function description
>sp|Q9LXA7|GTE2_ARATH Transcription factor GTE2 OS=Arabidopsis thaliana GN=GTE2 PE=2 SV=2 Back     alignment and function description
>sp|Q7Y214|GTE7_ARATH Transcription factor GTE7 OS=Arabidopsis thaliana GN=GTE7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10 OS=Arabidopsis thaliana GN=GTE10 PE=1 SV=2 Back     alignment and function description
>sp|Q93ZB7|GTE11_ARATH Transcription factor GTE11 OS=Arabidopsis thaliana GN=GTE11 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS28|GTE12_ARATH Transcription factor GTE12 OS=Arabidopsis thaliana GN=GTE12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
225461616597 PREDICTED: transcription factor GTE4-lik 0.851 0.835 0.467 1e-119
225446551654 PREDICTED: transcription factor GTE4-lik 0.781 0.700 0.449 1e-108
147820894660 hypothetical protein VITISV_035453 [Viti 0.781 0.693 0.449 1e-108
302143389612 unnamed protein product [Vitis vinifera] 0.742 0.710 0.457 1e-105
255568313 742 bromodomain-containing protein, putative 0.769 0.607 0.438 1e-104
302142921467 unnamed protein product [Vitis vinifera] 0.645 0.809 0.485 1e-104
449444709667 PREDICTED: transcription factor GTE4-lik 0.699 0.614 0.454 1e-104
356546972640 PREDICTED: transcription factor GTE4-lik 0.769 0.704 0.430 1e-100
356542179 901 PREDICTED: uncharacterized protein LOC10 0.796 0.518 0.426 5e-99
255567054553 bromodomain-containing protein, putative 0.697 0.739 0.454 2e-95
>gi|225461616|ref|XP_002283002.1| PREDICTED: transcription factor GTE4-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 279/597 (46%), Positives = 341/597 (57%), Gaps = 98/597 (16%)

Query: 8   GQSDAGEKQ-----DKFYSRKNQSKS----QNPKSVPPQYNQQPYSKKILASINTDDNSI 58
           G  D+ EKQ      K Y RKN +K          +     QQ  S + LA+   D NS+
Sbjct: 9   GGGDSREKQKWAESGKVYKRKNHNKGIKINNESSIINNNVAQQ--SSQTLATTTEDANSL 66

Query: 59  P--------VASDDSSSQ-PGAHNRREPSHGNAF-PGYAKFDSFVKISFDLNNREEVRAL 108
                     ASDDSSS  P A N RE  +GN   P     +     S  + ++ E R L
Sbjct: 67  QPQALSRFDAASDDSSSHTPPAENGRENMNGNGVKPEDPNVEKIRFRSISMRSKVEKRDL 126

Query: 109 KRKLASELEQVTSLVKRLDATQTQLSKIVH----------RNAG---------------- 142
           +RKL  EL+QV SL K+LD    QLS   H          R  G                
Sbjct: 127 RRKLLGELDQVRSLAKKLDTNDGQLSGYAHSQVSGNDGLDRGGGALRVNSEVGSVGVQDS 186

Query: 143 ------TVSVNKNGNNQGKSVDKKKMAPKTNQFHKNLD-VVGFEKLNPMESNKKLKSNTK 195
                 +VSV  N +  G+ V+K+K  PK N++++N D V+G +KL P ESNKK KSN  
Sbjct: 187 RPFRGLSVSVMGNSHGIGEFVEKEKRTPKANKYYQNPDFVLGKDKLPPPESNKKPKSNGV 246

Query: 196 GNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTV 255
           G +    K + + F++C NLL +LMKHK GWVFN PVDVKGLGL DYY+IIKHPMD GTV
Sbjct: 247 GID----KYVAQAFKNCSNLLAKLMKHKHGWVFNNPVDVKGLGLHDYYSIIKHPMDFGTV 302

Query: 256 KARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNF 315
           K+RLSKN YK+PREFAEDVR+T  NAM YNPKGQDVH MAEEL KIFE+ W  IEA+  +
Sbjct: 303 KSRLSKNWYKSPREFAEDVRLTLQNAMTYNPKGQDVHCMAEELLKIFEEKWAAIEADLYW 362

Query: 316 SRQSKMGRKSDFATPIPKTVPAPPPPVHTPTLGPPLPVHSPTSAHPVPVHTPTPVHTPPP 375
               + G   D  TP P +  AP    H          HSP                   
Sbjct: 363 ----RFGMGHDAGTPTPTSRKAPYLHHH----------HSP------------------- 389

Query: 376 PSGPLEARTLERVDSVPIPDDLKRKATDLAHQDTILVPKKPKANNPDKRDMTYEEKQRLS 435
                E RT++R  S+ +P D   K  + AH   + VPKKPKA +P KRDMTYEEKQ+LS
Sbjct: 390 -----EMRTVDRSGSMAMPIDSNLKPGNFAHM-RMPVPKKPKAKDPHKRDMTYEEKQKLS 443

Query: 436 MNLQELPSDKLDHVVQIIKKRNPVLSQQDDEIEVDIDTFDPETLWELDRFVTNYNKILSK 495
            NLQ LPS+KLDH+VQIIKKRN  +SQQDDEIEVDID+ D ETLWELDR+VTNY K LSK
Sbjct: 444 SNLQSLPSEKLDHIVQIIKKRNSAVSQQDDEIEVDIDSVDAETLWELDRYVTNYKKSLSK 503

Query: 496 NRGKAEVAHQATAEACHNIQDSNMEPIIAEAPKETEAVEKIVSTSSPVLEEKHGDKA 552
           N+ KAE+A QA A + HNIQ+       A APKET++  + VS +SP+  EK GD A
Sbjct: 504 NKRKAELAFQARANSDHNIQEMYSSSATAGAPKETKSDGEHVS-ASPIQAEKQGDNA 559

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446551|ref|XP_002276195.1| PREDICTED: transcription factor GTE4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147820894|emb|CAN67478.1| hypothetical protein VITISV_035453 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143389|emb|CBI21950.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568313|ref|XP_002525131.1| bromodomain-containing protein, putative [Ricinus communis] gi|223535590|gb|EEF37258.1| bromodomain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142921|emb|CBI20216.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444709|ref|XP_004140116.1| PREDICTED: transcription factor GTE4-like [Cucumis sativus] gi|449516325|ref|XP_004165197.1| PREDICTED: transcription factor GTE4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356546972|ref|XP_003541893.1| PREDICTED: transcription factor GTE4-like [Glycine max] Back     alignment and taxonomy information
>gi|356542179|ref|XP_003539547.1| PREDICTED: uncharacterized protein LOC100781720 [Glycine max] Back     alignment and taxonomy information
>gi|255567054|ref|XP_002524509.1| bromodomain-containing protein, putative [Ricinus communis] gi|223536183|gb|EEF37836.1| bromodomain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
TAIR|locus:2038565766 GTE4 "AT1G06230" [Arabidopsis 0.298 0.228 0.589 3.7e-94
TAIR|locus:2032692461 GTE3 "AT1G73150" [Arabidopsis 0.240 0.305 0.551 7.1e-78
TAIR|locus:2030958487 AT1G17790 "AT1G17790" [Arabido 0.240 0.289 0.524 2.4e-75
TAIR|locus:2155715590 GTE7 "AT5G65630" [Arabidopsis 0.358 0.355 0.387 2.5e-56
TAIR|locus:2086498 813 GTE8 "AT3G27260" [Arabidopsis 0.354 0.255 0.375 7.2e-34
TAIR|locus:2158564 1061 NPX1 "nuclear protein X1" [Ara 0.354 0.196 0.377 5.3e-32
TAIR|locus:2044722386 IMB1 "AT2G34900" [Arabidopsis 0.308 0.468 0.341 8.8e-31
UNIPROTKB|H9L2H3 859 LOC100859056 "Uncharacterized 0.228 0.155 0.372 6.4e-30
TAIR|locus:2082289 620 BET10 "AT3G01770" [Arabidopsis 0.191 0.180 0.530 1.7e-29
UNIPROTKB|Q5TJG6803 BRD2 "Bromodomain-containing p 0.228 0.166 0.398 2e-29
TAIR|locus:2038565 GTE4 "AT1G06230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 536 (193.7 bits), Expect = 3.7e-94, Sum P(3) = 3.7e-94
 Identities = 105/178 (58%), Positives = 134/178 (75%)

Query:   140 NAGTVSVNKNGNNQGKSVDKKKMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNTK--GN 197
             N  ++SV +N     + V+K+K  PK NQF++N + +  +KL P ESNKK KS++K  G 
Sbjct:   350 NQLSISVLENTQGVNEHVEKEKRTPKANQFYRNSEFLLGDKLPPAESNKKSKSSSKKQGG 409

Query:   198 ELVSYKNLG-RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVK 256
             ++      G ++F++C  LLERLMKHK GWVFN PVDVKGLGL DYYTII+HPMDLGT+K
Sbjct:   410 DVGHGFGAGTKVFKNCSALLERLMKHKHGWVFNAPVDVKGLGLLDYYTIIEHPMDLGTIK 469

Query:   257 ARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYN 314
             + L KNLYK+PREFAEDVR+TF NAM YNP+GQDVH+MA  L +IFE+ W  IEA+YN
Sbjct:   470 SALMKNLYKSPREFAEDVRLTFHNAMTYNPEGQDVHLMAVTLLQIFEERWAVIEADYN 527
GO:0003677 "DNA binding" evidence=ISS
GO:0005575 "cellular_component" evidence=ND
GO:0009294 "DNA mediated transformation" evidence=RCA;IMP
GO:0045931 "positive regulation of mitotic cell cycle" evidence=IMP
GO:0048364 "root development" evidence=IMP
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
TAIR|locus:2032692 GTE3 "AT1G73150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2030958 AT1G17790 "AT1G17790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155715 GTE7 "AT5G65630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086498 GTE8 "AT3G27260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158564 NPX1 "nuclear protein X1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044722 IMB1 "AT2G34900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|H9L2H3 LOC100859056 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2082289 BET10 "AT3G01770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TJG6 BRD2 "Bromodomain-containing protein 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
cd0550699 cd05506, Bromo_plant1, Bromodomain, uncharacterize 1e-53
cd05498102 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_lik 1e-36
cd0436999 cd04369, Bromodomain, Bromodomain 2e-29
smart00297107 smart00297, BROMO, bromo domain 8e-29
cd05497107 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like 4e-28
cd05509101 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like s 4e-25
cd05499102 cd05499, Bromo_BDF1_2_II, Bromodomain 4e-24
pfam0043984 pfam00439, Bromodomain, Bromodomain 4e-21
cd05504115 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like o 3e-20
cd05495108 cd05495, Bromo_cbp_like, Bromodomain, cbp_like sub 2e-18
cd05496119 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat I 3e-17
cd0550397 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BA 7e-17
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 2e-16
cd05502109 cd05502, Bromo_tif1_like, Bromodomain; tif1_like s 5e-16
cd0550597 cd05505, Bromo_WSTF_like, Bromodomain; Williams sy 3e-15
cd05511112 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subf 1e-13
cd0551298 cd05512, Bromo_brd1_like, Bromodomain; brd1_like s 4e-13
cd05528112 cd05528, Bromo_AAA, Bromodomain; sub-family co-occ 9e-12
COG5076371 COG5076, COG5076, Transcription factor involved in 2e-10
cd05510112 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like s 3e-10
cd05507104 cd05507, Bromo_brd8_like, Bromodomain, brd8_like s 3e-10
cd05519103 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfam 6e-10
cd05521106 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in 1e-09
cd05501102 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_li 9e-09
cd05518103 cd05518, Bromo_polybromo_IV, Bromodomain, polybrom 9e-09
cd05515105 cd05515, Bromo_polybromo_V, Bromodomain, polybromo 1e-08
cd05516107 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like su 3e-08
cd05520103 cd05520, Bromo_polybromo_III, Bromodomain, polybro 1e-07
cd05529128 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repe 1e-07
cd05522104 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II i 2e-07
cd0551398 cd05513, Bromo_brd7_like, Bromodomain, brd7_like s 3e-07
cd05525106 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-fa 8e-07
cd05517103 cd05517, Bromo_polybromo_II, Bromodomain, polybrom 1e-06
cd05524113 cd05524, Bromo_polybromo_I, Bromodomain, polybromo 5e-06
cd0550899 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subf 9e-06
cd05494114 cd05494, Bromodomain_1, Bromodomain; uncharacteriz 7e-05
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 4e-04
cd05491119 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like s 0.002
PRK00404141 PRK00404, tatB, sec-independent translocase; Provi 0.004
>gnl|CDD|99938 cd05506, Bromo_plant1, Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information 
 Score =  177 bits (450), Expect = 1e-53
 Identities = 64/99 (64%), Positives = 74/99 (74%)

Query: 208 LFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTP 267
           + + C  LL +LMKHK+GWVFN PVDV  LGL DY+ IIK PMDLGTVK +L K  Y +P
Sbjct: 1   VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSP 60

Query: 268 REFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTW 306
            EFA DVR+TF+NAM YNP G DVH MA+EL KIFE  W
Sbjct: 61  EEFAADVRLTFANAMRYNPPGNDVHTMAKELLKIFETRW 99

Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. Length = 99
>gnl|CDD|99930 cd05498, Bromo_Brdt_II_like, Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|99929 cd05497, Bromo_Brdt_I_like, Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>gnl|CDD|99941 cd05509, Bromo_gcn5_like, Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>gnl|CDD|99931 cd05499, Bromo_BDF1_2_II, Bromodomain Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|99936 cd05504, Bromo_Acf1_like, Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>gnl|CDD|99927 cd05495, Bromo_cbp_like, Bromodomain, cbp_like subfamily Back     alignment and domain information
>gnl|CDD|99928 cd05496, Bromo_WDR9_II, Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>gnl|CDD|99935 cd05503, Bromo_BAZ2A_B_like, Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information
>gnl|CDD|99934 cd05502, Bromo_tif1_like, Bromodomain; tif1_like subfamily Back     alignment and domain information
>gnl|CDD|99937 cd05505, Bromo_WSTF_like, Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>gnl|CDD|99943 cd05511, Bromo_TFIID, Bromodomain, TFIID-like subfamily Back     alignment and domain information
>gnl|CDD|99944 cd05512, Bromo_brd1_like, Bromodomain; brd1_like subfamily Back     alignment and domain information
>gnl|CDD|99957 cd05528, Bromo_AAA, Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>gnl|CDD|99942 cd05510, Bromo_SPT7_like, Bromodomain; SPT7_like subfamily Back     alignment and domain information
>gnl|CDD|99939 cd05507, Bromo_brd8_like, Bromodomain, brd8_like subgroup Back     alignment and domain information
>gnl|CDD|99950 cd05519, Bromo_SNF2, Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99952 cd05521, Bromo_Rsc1_2_I, Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily Back     alignment and domain information
>gnl|CDD|99949 cd05518, Bromo_polybromo_IV, Bromodomain, polybromo repeat IV Back     alignment and domain information
>gnl|CDD|99946 cd05515, Bromo_polybromo_V, Bromodomain, polybromo repeat V Back     alignment and domain information
>gnl|CDD|99947 cd05516, Bromo_SNF2L2, Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>gnl|CDD|99951 cd05520, Bromo_polybromo_III, Bromodomain, polybromo repeat III Back     alignment and domain information
>gnl|CDD|99958 cd05529, Bromo_WDR9_I_like, Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>gnl|CDD|99953 cd05522, Bromo_Rsc1_2_II, Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>gnl|CDD|99945 cd05513, Bromo_brd7_like, Bromodomain, brd7_like subgroup Back     alignment and domain information
>gnl|CDD|99955 cd05525, Bromo_ASH1, Bromodomain; ASH1_like sub-family Back     alignment and domain information
>gnl|CDD|99948 cd05517, Bromo_polybromo_II, Bromodomain, polybromo repeat II Back     alignment and domain information
>gnl|CDD|99954 cd05524, Bromo_polybromo_I, Bromodomain, polybromo repeat I Back     alignment and domain information
>gnl|CDD|99940 cd05508, Bromo_RACK7, Bromodomain, RACK7_like subfamily Back     alignment and domain information
>gnl|CDD|99926 cd05494, Bromodomain_1, Bromodomain; uncharacterized subfamily Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|99923 cd05491, Bromo_TBP7_like, Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 586
KOG1474640 consensus Transcription initiation factor TFIID, s 100.0
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.95
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.95
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.95
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.94
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.94
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.94
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.93
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.93
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.93
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.93
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.93
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.93
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.93
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.93
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.92
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.92
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.91
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.91
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.91
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.91
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 99.91
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.89
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.89
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.89
smart00297107 BROMO bromo domain. 99.88
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 99.88
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 99.88
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 99.88
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.88
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 99.87
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 99.85
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 99.85
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 99.85
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 99.84
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 99.82
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 99.7
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 99.69
COG5076371 Transcription factor involved in chromatin remodel 99.67
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 99.41
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 99.4
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 99.34
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 99.01
KOG00081563 consensus Transcription initiation factor TFIID, s 98.86
KOG1474 640 consensus Transcription initiation factor TFIID, s 98.75
KOG03861157 consensus Chromatin remodeling complex SWI/SNF, co 98.71
KOG1827 629 consensus Chromatin remodeling complex RSC, subuni 98.69
KOG00081563 consensus Transcription initiation factor TFIID, s 98.61
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 98.51
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 98.15
KOG1828418 consensus IRF-2-binding protein CELTIX-1, contains 97.83
COG5076371 Transcription factor involved in chromatin remodel 96.83
cd05493131 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- 96.2
KOG06441113 consensus Uncharacterized conserved protein, conta 91.28
KOG0732 1080 consensus AAA+-type ATPase containing the bromodom 86.37
PF05110 1191 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 81.34
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=6.7e-45  Score=410.97  Aligned_cols=393  Identities=33%  Similarity=0.429  Sum_probs=227.7

Q ss_pred             CCCeEEEEccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcc-cccccccccCCCCCC------Cc-cccc
Q 007876           89 FDSFVKISFDLNNREEVRALKRKLASELEQVTSLVKRLDATQTQLSKIVHR-NAGTVSVNKNGNNQG------KS-VDKK  160 (586)
Q Consensus        89 ~~~~~~~~~~~~s~~e~~~l~~rl~~el~qvr~l~kr~~~~~~~~~~~~~s-~~~~~~~~~n~~~~~------~~-~~~~  160 (586)
                      ...++++++..+++.++++|..+|+.+|+|||.+.++++  ......-++. ...+..+..+...+.      .. ....
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  182 (640)
T KOG1474|consen  105 GPKASKIPLDKDSSSQVRKLSERLKQELQQVRPLTKAVE--FSPEPSVVSPVSPASQPFKSKNGVKKVADTCVKSYKSKS  182 (640)
T ss_pred             ccccccCcCCCCchhhhhhhhhccccccccCCccccccc--ccccccccCCCCCcccccccccchhhhhccccccccccC
Confidence            567789999999999999999999999999999999998  1111111111 011111111100000      00 0000


Q ss_pred             ccCcccccccccccccccccCCCCcccccccccCCCCCccccCChHHHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCC
Q 007876          161 KMAPKTNQFHKNLDVVGFEKLNPMESNKKLKSNTKGNELVSYKNLGRLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLK  240 (586)
Q Consensus       161 ~~~p~~~k~~~~~~~~~~~~~~p~~~~kk~k~~~~~~~~~~~~~l~~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~p  240 (586)
                      .+.+...+.+.... .+.....+.    +.. .. .........+..++++|..||.+||.|+++|+|+.|||++.||+|
T Consensus       183 ~~~~~~~~~~~~~~-~~~~~~~~~----~~~-~~-~~~~~~~~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLp  255 (640)
T KOG1474|consen  183 EREPSPGQKREGTV-APNSSRESG----DSA-AE-EEAKPKSKLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLP  255 (640)
T ss_pred             cCCCCccccccccc-cCccccccc----ccc-cc-ccccccccccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCc
Confidence            00000000000000 000000000    000 00 011123345788999999999999999999999999999999999


Q ss_pred             ChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 007876          241 DYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAEYNFSRQSK  320 (586)
Q Consensus       241 DY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~~~~~~~~~~  320 (586)
                      |||+|||+||||+||+.||++|.|.++.+|++||||||.|||+||++|++||.||+.|+++|+.+|+.++.++.......
T Consensus       256 DY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~  335 (640)
T KOG1474|consen  256 DYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAV  335 (640)
T ss_pred             chhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887765321111


Q ss_pred             cCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC--CCCCCCCCCCCCC-CCCCCChhhhh-hhhhcCCCCCC
Q 007876          321 MGRKSDFA-TPIPKTVPAPPPPVHTPTLGPPLPV-HSPTSA--HPVPVHTPTPVHT-PPPPSGPLEAR-TLERVDSVPIP  394 (586)
Q Consensus       321 ~~~~~e~~-~p~P~s~~ap~p~~~~~~~~~~~~~-~s~~ss--~~~~~~~~~~~~~-~~~~~~~~~~r-~~~r~~s~~~~  394 (586)
                      .++..... ...+....+.+  ..   ....... .+....  +..+........- ......+.... .+.+.-.....
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  410 (640)
T KOG1474|consen  336 KEEAGMASSDQIPSNSVEGP--RS---SSFESRESASEPSSELMSEEERKKLLAELKLLLKDVPPQLIALLQRPVSKPPR  410 (640)
T ss_pred             ccccccccccccccccccCc--cc---ccchhcccccCcccccccHHhhhhhHhhhhcchhhhhHHHHhhhhccccCccc
Confidence            11000000 00000000000  00   0000000 000000  0000000000000 00000000000 00000000000


Q ss_pred             c-hhhhhccccc---ccccccCCCCCCCCCCCCCCCCHHHHHHHHHHhcC-CChhhHHHHHHHH--HhhCCCCCCCCCcE
Q 007876          395 D-DLKRKATDLA---HQDTILVPKKPKANNPDKRDMTYEEKQRLSMNLQE-LPSDKLDHVVQII--KKRNPVLSQQDDEI  467 (586)
Q Consensus       395 ~-~~k~k~~~~~---~~~~~~~~kkpk~~~~~~rpMT~eEK~~Ls~~I~~-Lp~ekL~~VV~II--q~~~p~l~~~~dEI  467 (586)
                      . ..+.......   ........+.........+.||+.|+..|...+.. +|+.+|..+++||  ..+.+.+.+++++|
T Consensus       411 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~~~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~  490 (640)
T KOG1474|consen  411 KIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLKELLQNLLPPNKLESIVEILKPEKRQLDLSQNDDEI  490 (640)
T ss_pred             cccccccccccccchhhhhhhhhccccccccccccccccccccchhhccCCCCCccccCcccccchhhhcccccccccch
Confidence            0 0000000000   00000112223334557899999999999999999 5999999999999  55778888889999


Q ss_pred             EEeCCCCC-------------HHHHHHHHHHHHHHHHhhhh
Q 007876          468 EVDIDTFD-------------PETLWELDRFVTNYNKILSK  495 (586)
Q Consensus       468 EIDId~L~-------------~~TLreL~ryV~~~kK~~~K  495 (586)
                      ++|++.++             ..|+|++.+|+..+.....+
T Consensus       491 ~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~  531 (640)
T KOG1474|consen  491 ELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELELSK  531 (640)
T ss_pred             hhcccccccccccCCCcccchhhhhhccccchhhHHHHHHH
Confidence            99999999             99999999999988765543

>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05110 AF-4: AF-4 proto-oncoprotein; InterPro: IPR007797 This family consist of family member 1 (proto-oncogene AF4), family member 2 or FMR2 (Fragile X E mental retardation syndrome), family member 3 or LAF4 (lymphoid nuclear protein related to AF4) and family member 4 (protein lilliputian) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3oni_A114 Crystal Structure Of The Second Bromodomain Of Huma 9e-21
2dvv_A112 Crystal Structure Of The Second Bromodomain Of The 2e-20
2g4a_A116 Solution Structure Of A Bromodomain From Ring3 Prot 4e-20
2ouo_A130 Crystal Structure Of The Bromo Domain 2 In Human Br 4e-20
2lsp_B128 Solution Structures Of Brd4 Second Bromodomain With 4e-20
2oss_A127 Crystal Structure Of The Bromo Domain 1 In Human Br 4e-20
4hbw_A127 Crystal Structure Of The First Bromodomain Of Human 4e-20
3jvj_A131 Crystal Structure Of The Bromodomain 1 In Mouse Brd 5e-20
4don_A145 Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihy 6e-20
2wp2_A120 Structure Of Brdt Bromodomain Bd1 Bound To A Diacet 2e-19
2rfj_A119 Crystal Structure Of The Bromo Domain 1 In Human Br 3e-19
2i8n_A114 Solution Structure Of The Second Bromodomain Of Brd 1e-18
4a9e_A154 N-Terminal Bromodomain Of Human Brd2 With 3-Methyl- 2e-18
3jvl_A120 Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Le 2e-18
2ydw_A153 Crystal Structure Of The First Bromodomain Of Human 2e-18
2wp1_A126 Structure Of Brdt Bromodomain 2 Bound To An Acetyla 3e-18
2nxb_A123 Crystal Structure Of Human Bromodomain Containing P 9e-18
2yw5_A138 Solution Structure Of The Bromodomain From Human Br 1e-17
2l5e_A128 Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Lengt 1e-17
2dww_A114 Crystal Structure Of Bromodomain-Containing Protein 2e-17
2oo1_A113 Crystal Structure Of The Bromo Domain 2 Of Human Br 2e-16
2e7n_A117 Solution Structure Of The Second Bromodomain From H 3e-16
3aqa_A128 Crystal Structure Of The Human Brd2 Bd1 Bromodomain 3e-16
1x0j_A122 Crystal Structure Analysis Of The N-Terminal Bromod 8e-15
3dwy_A119 Crystal Structure Of The Bromodomain Of Human Crebb 1e-13
3i3j_A124 Crystal Structure Of The Bromodomain Of Human Ep300 1e-13
1jsp_B121 Nmr Structure Of Cbp Bromodomain In Complex With P5 2e-13
3q2e_A123 Crystal Structure Of The Second Bromodomain Of Huma 3e-12
2jns_A90 Solution Structure Of The Bromodomain-Containing Pr 3e-11
3qzv_A174 Crystal Structure Of Bptf Phd-Linker-Bromo In Compl 5e-11
2ri7_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 6e-11
3uv2_A126 Crystal Structure Of The Bromodomain Of Human Nucle 6e-11
1e6i_A121 Bromodomain From Gcn5 Complexed With Acetylated H4 6e-11
2yyn_A135 Crystal Sturcture Of Human Bromodomain Protein Leng 7e-11
3qzt_A115 Crystal Structure Of Bptf Bromo In Complex With His 9e-11
3qzs_A115 Crystal Structure Of Bptf Bromo In Complex With His 1e-10
3fkm_X166 Plasmodium Falciparum Bromodomain-Containing Protei 2e-10
3mb3_A135 Crystal Structure Of The Second Bromodomain Of Plec 3e-10
3o33_A184 Crystal Structure Of Trim24 Phd-Bromo In The Free S 4e-10
3lxj_A136 Crystal Structure Of The Bromodomain Of Human Aaa D 4e-10
2f6j_A174 Crystal Structure Of Phd Finger-Linker-Bromodomain 2e-09
3g0l_A117 Crystal Structure Of Human Bromodomain Adjacent To 8e-09
3gg3_A119 Crystal Structure Of The Bromodomain Of Human Pcaf 1e-08
1n72_A118 Structure And Ligand Of A Histone Acetyltransferase 1e-08
3d7c_A112 Crystal Structure Of The Bromodomain Of Human Gcn5, 1e-08
2dkw_A131 Solution Structure Of The Bromodomain Of Human Prot 2e-08
2e7o_A112 Solution Structure Of The Bromodomain From Human Br 2e-08
1f68_A103 Nmr Solution Structure Of The Bromodomain From Huma 2e-08
3u5m_A207 Crystal Structure Of Trim33 Phd-Bromo In The Free S 2e-08
3nxb_A116 Crystal Structure Of The Bromodomain Of Human Cecr2 2e-08
3dai_A130 Crystal Structure Of The Bromodomain Of The Human A 5e-07
3uv5_A265 Crystal Structure Of The Tandem Bromodomains Of Hum 1e-06
3aad_A292 Structure Of The Histone Chaperone Cia/asf1-double 1e-06
1eqf_A280 Crystal Structure Of The Double Bromodomain Module 1e-06
3rcw_A135 Crystal Structure Of The Bromodomain Of Human Brd1 1e-06
3uv4_A158 Crystal Structure Of The Second Bromodomain Of Huma 2e-06
2ktb_B121 Solution Structure Of The Second Bromodomain Of Hum 5e-06
3ljw_A120 Crystal Structure Of The Second Bromodomain Of Huma 5e-06
3hmf_A116 Crystal Structure Of The Second Bromodomain Of Huma 6e-06
3hme_A123 Crystal Structure Of Human Bromodomain Containing 9 8e-06
3hmh_A155 Crystal Structure Of The Second Bromodomain Of Huma 2e-05
3tlp_A150 Crystal Structure Of The Fourth Bromodomain Of Huma 1e-04
2i7k_A117 Solution Structure Of The Bromodomain Of Human Brd7 1e-04
3g0j_A124 Crystal Structure Of The Fifth Bromodomain Of Human 3e-04
2grc_A129 1.5 A Structure Of Bromodomain From Human Brg1 Prot 4e-04
3uvd_A124 Crystal Structure Of The Bromodomain Of Human Trans 4e-04
2h60_A128 Solution Structure Of Human Brg1 Bromodomain Length 4e-04
2d9e_A121 Solution Structure Of The Bromodomain Of Peregrin L 5e-04
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2 In Complex With The Inhibitor Jq1 Length = 114 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 204 NLGRL---FQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKA 257
           ++G+L    + C  +L+ L+  K   + W F KPVD   LGL DY+ IIKHPMDL TVK 
Sbjct: 1   SMGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKR 60
Query: 258 RLSKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKI 309
           ++    Y+  +EFA DVR+ FSN   YNP   DV  MA +L  +FE  + K+
Sbjct: 61  KMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM 112
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human Brd2 Protein Length = 112 Back     alignment and structure
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein Length = 116 Back     alignment and structure
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human Bromodomain Containing Protein 4 (Brd4) Length = 130 Back     alignment and structure
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With Nf-Kb-K310ac Peptide Length = 128 Back     alignment and structure
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein 4 (Brd4) Length = 127 Back     alignment and structure
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4 In Complex With A Quinazoline Ligand Length = 127 Back     alignment and structure
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4 Length = 131 Back     alignment and structure
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment 3,4-dihydro-3-methyl-2(1h)- Quinazolinon Length = 145 Back     alignment and structure
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated Histone H4 Peptide. Length = 120 Back     alignment and structure
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human Bromodomain Containing Protein, Testis Specific (Brdt) Length = 119 Back     alignment and structure
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4 Length = 114 Back     alignment and structure
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One Length = 154 Back     alignment and structure
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4 Length = 120 Back     alignment and structure
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2 With The Inhibitor Gw841819x Length = 153 Back     alignment and structure
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated Histone H3 Peptide Length = 126 Back     alignment and structure
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein 3 (Brd3) Length = 123 Back     alignment and structure
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Containing Protein 3 Length = 138 Back     alignment and structure
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail Length = 128 Back     alignment and structure
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4 Length = 114 Back     alignment and structure
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human Bromodomain Containing Protein 3 (Brd3) Length = 113 Back     alignment and structure
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human Bromodomain-Containing Protein 3 Length = 117 Back     alignment and structure
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In Complex With A Brd2-Interactive Compound, Bic1 Length = 128 Back     alignment and structure
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain Of Human Brd2 Length = 122 Back     alignment and structure
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp Length = 119 Back     alignment and structure
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300 Length = 124 Back     alignment and structure
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53 Peptide Length = 121 Back     alignment and structure
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Bromodomain And Wd Repeat-Containing Protein 1 Isoform A (Wdr9) Length = 123 Back     alignment and structure
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4 Et Domain Length = 90 Back     alignment and structure
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With Histone H4k12ac Peptide Length = 174 Back     alignment and structure
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e Mutant From Human Bptf In The H3(1-9)k4me2 Bound State Length = 174 Back     alignment and structure
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human Nucleosome-Remodeling Factor Subunit Bptf Length = 126 Back     alignment and structure
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide Length = 121 Back     alignment and structure
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein Length = 135 Back     alignment and structure
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form Ii Length = 115 Back     alignment and structure
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone H4k16ac - Form I Length = 115 Back     alignment and structure
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein Pf10_0328 Length = 166 Back     alignment and structure
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin Homology Domain Interacting Protein (Phip) Length = 135 Back     alignment and structure
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State Length = 184 Back     alignment and structure
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain Containing 2b (Atad2b) Length = 136 Back     alignment and structure
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State Length = 174 Back     alignment and structure
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc Finger Domain 2b (Baz2b) Length = 117 Back     alignment and structure
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf Length = 119 Back     alignment and structure
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase Bromodomain Length = 118 Back     alignment and structure
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The General Control Of Amino-Acid Synthesis Protein 5-Like 2 Length = 112 Back     alignment and structure
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein Kiaa1240 Length = 131 Back     alignment and structure
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human Bromodomain Adjacent To Zinc Finger Domain 2b Length = 112 Back     alignment and structure
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5 Length = 103 Back     alignment and structure
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State Length = 207 Back     alignment and structure
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2 Length = 116 Back     alignment and structure
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2 Length = 130 Back     alignment and structure
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 265 Back     alignment and structure
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double Bromodomain Complex Linking Histone Modifications And Site-specific Histone Eviction Length = 292 Back     alignment and structure
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From Human Tafii250 Length = 280 Back     alignment and structure
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1 Length = 135 Back     alignment and structure
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Transcription Initiation Factor Tfiid Subunit 1 (Taf1) Length = 158 Back     alignment and structure
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human Polybr Complex With An Acetylated Peptide From Histone 3 Length = 121 Back     alignment and structure
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Polybromo Length = 120 Back     alignment and structure
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 116 Back     alignment and structure
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9 Isoform 1 (Brd9) Length = 123 Back     alignment and structure
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l) Length = 155 Back     alignment and structure
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 150 Back     alignment and structure
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7 Protein Length = 117 Back     alignment and structure
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human Poly-Bromodomain Containing Protein 1 (Pb1) Length = 124 Back     alignment and structure
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A Central Atpase Of SwiSNF REMODELING COMPLEX Length = 129 Back     alignment and structure
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human Transcription Activator Brg1 (Smarca4) In Complex With N-Methyl-2-Pyrrolidone Length = 124 Back     alignment and structure
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain Length = 128 Back     alignment and structure
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 4e-48
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 2e-47
3p1f_A119 CREB-binding protein; structural genomics consorti 6e-47
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 7e-47
3fkm_X166 Signaling protein; bromodomain, malaria, structura 1e-45
4alg_A154 Bromodomain-containing protein 2; signaling protei 2e-45
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 2e-44
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 3e-44
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 2e-43
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 5e-43
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 9e-43
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 1e-42
3d7c_A112 General control of amino acid synthesis protein 5; 3e-41
3nxb_A116 CAT eye syndrome critical region protein 2; struct 5e-40
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 1e-38
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 2e-38
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 3e-38
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 2e-37
2d9e_A121 Peregrin; four-helix bundle, transcription activat 1e-36
3rcw_A135 Bromodomain-containing protein 1; transcription, s 2e-36
3dai_A130 ATPase family AAA domain-containing protein 2; anc 2e-35
3uv4_A158 Second bromodomain of human transcription initiat 1e-34
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 3e-34
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 7e-33
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 2e-28
2grc_A129 Probable global transcription activator SNF2L4; br 9e-32
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 1e-31
3aad_A292 Transcription initiation factor TFIID subunit 1; p 2e-31
3aad_A292 Transcription initiation factor TFIID subunit 1; p 3e-27
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 1e-29
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 2e-29
2dat_A123 Possible global transcription activator SNF2L2; br 5e-29
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 5e-29
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 1e-28
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 2e-27
2r0y_A311 Chromatin structure-remodeling complex protein RSC 2e-26
2r0y_A311 Chromatin structure-remodeling complex protein RSC 3e-18
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 1e-25
2r10_A361 Chromatin structure-remodeling complex protein RSC 6e-25
2r10_A361 Chromatin structure-remodeling complex protein RSC 5e-16
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 6e-21
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 5e-20
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Length = 120 Back     alignment and structure
 Score =  162 bits (413), Expect = 4e-48
 Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)

Query: 203 KNLGRLFQSCRNLLERLMKHK---FGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARL 259
             +    + C  +L+ +   K   + W F KPVDV+ LGL DY  IIKHPMD+ T+K++L
Sbjct: 5   SKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKL 64

Query: 260 SKNLYKTPREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIEAE 312
               Y+  +EF  DVR+ FSN   YNP   +V  MA +L  +FE  + K+  E
Sbjct: 65  ESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Length = 117 Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Length = 121 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Length = 174 Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 135 Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Length = 112 Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} Length = 116 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Length = 123 Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 131 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Length = 117 Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Length = 135 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Length = 130 Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Length = 158 Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Length = 120 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Length = 265 Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Length = 129 Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Length = 150 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Length = 292 Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Length = 124 Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Length = 126 Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123 Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Length = 130 Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Length = 116 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 90 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Length = 361 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.96
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.95
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.95
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.95
3d7c_A112 General control of amino acid synthesis protein 5; 99.95
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.95
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.95
3p1f_A119 CREB-binding protein; structural genomics consorti 99.95
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.94
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.94
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.94
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.94
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.94
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.94
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.94
2dat_A123 Possible global transcription activator SNF2L2; br 99.94
2grc_A129 Probable global transcription activator SNF2L4; br 99.94
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.94
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.94
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.93
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.93
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.93
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.93
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.93
3uv4_A158 Second bromodomain of human transcription initiat 99.92
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.91
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.91
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.91
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.91
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.9
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.89
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.89
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.89
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.88
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.87
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.86
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.85
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.84
2jns_A90 Bromodomain-containing protein 4; ET-domain, struc 99.82
2r10_A361 Chromatin structure-remodeling complex protein RSC 99.8
2r0y_A311 Chromatin structure-remodeling complex protein RSC 99.78
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.68
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 99.51
2lm0_A125 AF4/FMR2 family member 1/protein AF-9 chimera; int 95.11
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
Probab=99.96  E-value=3.1e-29  Score=229.58  Aligned_cols=109  Identities=40%  Similarity=0.790  Sum_probs=103.3

Q ss_pred             CChHHHHHHHHHHHHHHHcCCC---CccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhh
Q 007876          203 KNLGRLFQSCRNLLERLMKHKF---GWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFS  279 (586)
Q Consensus       203 ~~l~~~~k~c~~IL~~L~~~k~---a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~  279 (586)
                      ..+++.+++|..||..|+.+++   +|+|..|||+..+++||||+||++||||+||++||.+|.|.++.+|.+||+|||.
T Consensus        18 ~~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~   97 (130)
T 2ouo_A           18 SKVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFS   97 (130)
T ss_dssp             -CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            3568899999999999999874   8999999999988899999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 007876          280 NAMLYNPKGQDVHIMAEELSKIFEDTWKKIEA  311 (586)
Q Consensus       280 Na~~YN~~~s~V~~~A~~L~~~Fe~~~~~i~~  311 (586)
                      ||++||++++.||.+|..|+++|+.+|++++.
T Consensus        98 Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp~  129 (130)
T 2ouo_A           98 NCYKYNPPDHEVVAMARKLQDVFEMRFAKMPD  129 (130)
T ss_dssp             HHHHHSCTTSHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999999999999999999999999998764
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 586
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 5e-30
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 2e-29
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 7e-29
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 9e-29
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 7e-27
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 6e-26
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure

class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: CREB-binding protein, CBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 5e-30
 Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 208 LFQSCRNLLERLMKH-KFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKT 266
           L Q+    LE L +       F +PVD + LG+ DY+ I+K+PMDL T+K +L    Y+ 
Sbjct: 7   LRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQE 66

Query: 267 PREFAEDVRITFSNAMLYNPKGQDVHIMAEELSKIFEDTWKKIE 310
           P ++ +DV + F+NA LYN K   V+    +L+++FE     + 
Sbjct: 67  PWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVM 110
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.94
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.94
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.93
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.93
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.92
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-27  Score=206.59  Aligned_cols=100  Identities=32%  Similarity=0.568  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCccCcCCCCcCcCCCCChhhhcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHhhhhhcccCC
Q 007876          207 RLFQSCRNLLERLMKHKFGWVFNKPVDVKGLGLKDYYTIIKHPMDLGTVKARLSKNLYKTPREFAEDVRITFSNAMLYNP  286 (586)
Q Consensus       207 ~~~k~c~~IL~~L~~~k~a~~F~~PVd~~~l~~pDY~~iIK~PMDL~TIk~KL~~~~Y~s~~eF~~DvrLIf~Na~~YN~  286 (586)
                      ++...|..||..|++|+.+|+|..||++..  +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||+
T Consensus         2 ~L~~~l~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~   79 (102)
T d3d7ca1           2 QLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNP   79 (102)
T ss_dssp             HHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCccCCCCChhh--CcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHCC
Confidence            578999999999999999999999999866  999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Q 007876          287 KGQDVHIMAEELSKIFEDTWKK  308 (586)
Q Consensus       287 ~~s~V~~~A~~L~~~Fe~~~~~  308 (586)
                      ++|.++.+|..|+++|+++|++
T Consensus        80 ~~s~~~~~A~~l~~~f~~~~ke  101 (102)
T d3d7ca1          80 PDSEYCRCASALEKFFYFKLKE  101 (102)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998875
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure