Citrus Sinensis ID: 007902

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-----
Protein Sequence
MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKFL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHccEEccccccHHHHHHHHHHHHHHcccccEEEEEEccccccEEEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccEEcccHHHccccHccccccccEEEEEEEccccccccEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEccccccccccEEEEccccccccEEEEEEEEcccccEEEEEEEccccccccccccHHHHHHHc
Coil and Loop (DISEMBL)
mattvapavetsdLLQKLSLDSQtksleisehtkkpsanqygsvdsvnaaangqipsersgtpflndfmdpnmcyvpngypstafyyggydgnvgewddytryvsqdgvdmtsgvygdngslmyhhgygyapyppyspatspvptmgtdgqlygpqhyqyphyfqpitptsspyspspvaptpgdiptsvaadqkplpvestngksngvanaggvkgnngsapfkptyqpfnsnntygrgslpgrgpasgyqdprcnldgmrspipwldgpvisdarpvasntfnssiSNVNNvassrnqnyrpnshymglhhprpmsgmgaaqgfmnmnrmypnklygqygntfrsgvgfgsngydlrtngrgwlsvdgkyksrgrgngyfgygnenmdglnelnrgprakgaknqkgsapnalpvkeqnvltngtaedendkislspdrdeynkadfpeeytdAKFFVIKsyseddvhksIKYSVwastpngnkkLDAAYQEAQqksrscpvflLFSVNtsgqfvglaemagpvdfnknveywqqdkwtgcfpvkwhivkdvpnsLLKHItlennenkpvtnsrdTQEVIKFL
Flexible Loop (DISEMBL)
mattvapavetsdllqklsLDSQTKSLEisehtkkpsanqygsVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRgwlsvdgkyksrgrgNGYFGYGNENMDGLNELNRGPRAKGAknqkgsapnalpvkeqnvltngtaedendkislspdrdeynkadfpeeytDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHItlennenkpvtnsrdtqevikfl
Low Complexity Region (SEG)
MATTVAPAVEtsdllqklsldsqtkslEISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMyhhgygyapyppyspatspvptMGTDGQLYGPQHYQYPHYFQpitptsspyspspvaptpGDIPTSVAADQKPLPVESTNGKSngvanaggvkgnngSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVAsntfnssisnvnnvassrnqnYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSrgrgngyfgygnENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKFL
Disordered region (IsUnstruct)
***************************************************************FLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPY*************GQLYGPQHYQYPHYFQP**************************************************************************************************IPWLDGPVI***************************************************GFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYG******************************************************************EYTDAKFFVIKSYSEDDVHKSIKYSVWAS********************SCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITL*********************
Disordered Region (DISOPRED)
*************************************************************************CYVPNGYPSTAFYYGGYDGNVGEWD************************MYHHGY*********************************************************************************************************************************************************************************************************************************************************************************************************************************PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAG***FNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKF*
Disordered Region (DISEMBL)
*********ETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPT***********TPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGP************PNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDA*********RSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENK********QEVIKFL
Disordered Region (DISPRO)
**********************************************************RSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVIS***********************************************AAQ*****NRMYPNK*YGQYGNTFRSGVGFGSN***LRTNGRGW************************D******************************************DKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	585	2.2.26 [Sep-21-2011]
Q0VCZ3	580	YTH domain family protein	yes	no	0.230	0.232	0.615	1e-43
Q4R5D9	579	YTH domain family protein	N/A	no	0.230	0.233	0.615	1e-43
Q9Y5A9	579	YTH domain family protein	yes	no	0.230	0.233	0.615	1e-43
Q8BYK6	585	YTH domain family protein	no	no	0.234	0.234	0.6	8e-43
Q5RFL8	585	YTH domain family protein	yes	no	0.234	0.234	0.6	8e-43
Q7Z739	585	YTH domain family protein	no	no	0.234	0.234	0.6	8e-43
P59326	559	YTH domain family protein	no	no	0.294	0.307	0.5	8e-43
Q9BYJ9	559	YTH domain family protein	no	no	0.230	0.241	0.586	3e-42
Q06390	306	YTH domain-containing pro	yes	no	0.211	0.405	0.421	2e-22
Q9QY02	738	YTH domain-containing pro	no	no	0.206	0.163	0.315	2e-11

>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1

 Score =  178 bits (452), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 99/138 (71%), Gaps = 3/138 (2%)

Query: 444 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCP 503
           YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K    P
Sbjct: 399 YNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---P 455

Query: 504 VFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHIT 563
           V+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+HI 
Sbjct: 456 VYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIR 515

Query: 564 LENNENKPVTNSRDTQEV 581
           LENNENKPVTNSRDTQEV
Sbjct: 516 LENNENKPVTNSRDTQEV 533

Bos taurus (taxid: 9913)

>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 99/138 (71%), Gaps = 3/138 (2%)

Query: 444 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCP 503
           YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K    P
Sbjct: 398 YNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---P 454

Query: 504 VFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHIT 563
           V+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+HI 
Sbjct: 455 VYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIR 514

Query: 564 LENNENKPVTNSRDTQEV 581
           LENNENKPVTNSRDTQEV
Sbjct: 515 LENNENKPVTNSRDTQEV 532

Macaca fascicularis (taxid: 9541)

>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 99/138 (71%), Gaps = 3/138 (2%)

Query: 444 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCP 503
           YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K    P
Sbjct: 398 YNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---P 454

Query: 504 VFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHIT 563
           V+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+HI 
Sbjct: 455 VYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIR 514

Query: 564 LENNENKPVTNSRDTQEV 581
           LENNENKPVTNSRDTQEV
Sbjct: 515 LENNENKPVTNSRDTQEV 532

Homo sapiens (taxid: 9606)

>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2

 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 442 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 501
           + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K   
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459

Query: 502 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 561
            P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518

Query: 562 ITLENNENKPVTNSRDTQEV 581
           I LENN+NKPVTNSRDTQEV
Sbjct: 519 IRLENNDNKPVTNSRDTQEV 538

Mus musculus (taxid: 10090)

>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1

 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 442 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 501
           + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K   
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459

Query: 502 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 561
            P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518

Query: 562 ITLENNENKPVTNSRDTQEV 581
           I LENN+NKPVTNSRDTQEV
Sbjct: 519 IRLENNDNKPVTNSRDTQEV 538

Pongo abelii (taxid: 9601)

>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1

 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 101/140 (72%), Gaps = 3/140 (2%)

Query: 442 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRS 501
           + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K   
Sbjct: 402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG-- 459

Query: 502 CPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKH 561
            P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+H
Sbjct: 460 -PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRH 518

Query: 562 ITLENNENKPVTNSRDTQEV 581
           I LENN+NKPVTNSRDTQEV
Sbjct: 519 IRLENNDNKPVTNSRDTQEV 538

Homo sapiens (taxid: 9606)

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score =  175 bits (444), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/182 (50%), Positives = 114/182 (62%), Gaps = 10/182 (5%)

Query: 400 RAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFF 459
           ++ GA +   S  NA P    +V ++   E      S       YN  +F       + F
Sbjct: 340 QSGGANSDSNSVGNAQPTSAPSVESHPVLEKLKAAHS-------YNPKEFDWNLKSGRVF 392

Query: 460 VIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGL 519
           +IKSYSEDD+H+SIKYS+W ST +GNK+LD A++    K    PV+LLFSVN SG F G+
Sbjct: 393 IIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGV 449

Query: 520 AEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQ 579
           AEM  PVD+  +   W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQ
Sbjct: 450 AEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQ 509

Query: 580 EV 581
           EV
Sbjct: 510 EV 511

Mus musculus (taxid: 10090)

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1

 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 100/138 (72%), Gaps = 3/138 (2%)

Query: 444 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCP 503
           YN  +F       + F+IKSYSEDD+H+SIKYS+W ST +GNK+LD+A++    K    P
Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---P 433

Query: 504 VFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHIT 563
           V+LLFSVN SG F G+AEM  PVD+  +   W QDKW G F V+W  VKDVPN+ L+HI 
Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493

Query: 564 LENNENKPVTNSRDTQEV 581
           LENN+NKPVTNSRDTQEV
Sbjct: 494 LENNDNKPVTNSRDTQEV 511

Homo sapiens (taxid: 9606)

>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 82/128 (64%), Gaps = 4/128 (3%)

Query: 455 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 514
           +++FFVIKS S   V +S    +W+ST  GNK+L  AY++    ++   VFL FS+NTSG
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAK---VFLFFSINTSG 210

Query: 515 QFVGLAEMAGPVDFNKNVEYWQ-QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVT 573
           +F G+AEM   +  + +   W+ + K+   F V+W IV+D+ N  LK   + +NE KP+T
Sbjct: 211 RFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPIT 270

Query: 574 NSRDTQEV 581
           +SRDTQE+
Sbjct: 271 HSRDTQEI 278

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 12/133 (9%)

Query: 455 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 514
           DA+FF+IKS + ++V  +    VW++ P   KKL+ A++ A+       V L+FSV  SG
Sbjct: 357 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 410

Query: 515 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 568
           +F G A ++       +  +W            G F + W   +++P +   H+T   NE
Sbjct: 411 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470

Query: 569 NKPVTNSRDTQEV 581
           +KPV   RD QE+
Sbjct: 471 HKPVKIGRDGQEI 483

May be part of a signal transduction pathway that influences splice site selection.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
225435800	705	PREDICTED: uncharacterized protein LOC10	0.979	0.812	0.736	0.0
356525319	707	PREDICTED: uncharacterized protein LOC10	0.988	0.817	0.725	0.0
356525321	659	PREDICTED: uncharacterized protein LOC10	0.986	0.875	0.726	0.0
356512580	660	PREDICTED: uncharacterized protein LOC10	0.986	0.874	0.716	0.0
297746505	675	unnamed protein product [Vitis vinifera]	0.931	0.807	0.701	0.0
255544682	636	yth domain-containing protein, putative	0.958	0.882	0.672	0.0
449452630	704	PREDICTED: uncharacterized protein LOC10	0.981	0.815	0.711	0.0
357519269	677	YTH domain family protein [Medicago trun	0.926	0.800	0.669	0.0
118489688	615	unknown [Populus trichocarpa x Populus d	0.935	0.889	0.642	0.0
359481843	646	PREDICTED: uncharacterized protein LOC10	0.958	0.868	0.613	0.0

>gi|225435800|ref|XP_002285750.1| PREDICTED: uncharacterized protein LOC100253534 [Vitis vinifera]

 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/584 (73%), Positives = 486/584 (83%), Gaps = 11/584 (1%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERS 60
           MA    PA + ++LLQKLSLDSQTK+LEI E TKKPS NQ+G+VD  +AA       ERS
Sbjct: 1   MAAVAPPADQAAELLQKLSLDSQTKTLEIPEPTKKPSGNQFGAVDGGDAANGQNQSCERS 60

Query: 61  GTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNG 120
            TP L +FMDP++CYVPNG   +++YYGGYDG   EW+DY+RY++ +GV+M +GVYGDNG
Sbjct: 61  VTPLLQEFMDPSVCYVPNG--YSSYYYGGYDGTTNEWEDYSRYMNPEGVEMPAGVYGDNG 118

Query: 121 SLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPV 179
           SLMYHHGYGYAPY PY PA SPVPT+G DGQLYGPQHYQYP  YFQP TPTS PY+PSP 
Sbjct: 119 SLMYHHGYGYAPYGPYPPAGSPVPTVGHDGQLYGPQHYQYPAPYFQPPTPTSGPYNPSPG 178

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTY 237
           AP PG++ TSVAADQKPL VE+ NG SNG+A+ G +KGNNGSAP KPTYQ  PFNSN +Y
Sbjct: 179 APPPGEVTTSVAADQKPLSVETANGNSNGIASGGAMKGNNGSAPVKPTYQNSPFNSNGSY 238

Query: 238 GRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASS 297
           GRG+LPG  PASGYQDPR   DG+RSP+PWLDGPV SD RPV S +  SSISN NNV +S
Sbjct: 239 GRGALPGGVPASGYQDPRFAFDGLRSPLPWLDGPVFSDPRPVTSTSITSSISNANNVTAS 298

Query: 298 RNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYD 357
           RN   RP+SH+MGL HPRPMSGMG A GFMN  RMYPNKLYGQYGNT RSG+GFGSN YD
Sbjct: 299 RN--LRPHSHFMGLQHPRPMSGMGTAHGFMN--RMYPNKLYGQYGNTVRSGLGFGSNAYD 354

Query: 358 LRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPV 417
            RTNGR WL+VD KYK RGRG G+FGYGNENMDGLNELNRGPRAK +KNQKG AP  +  
Sbjct: 355 SRTNGRSWLAVDNKYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAP--VTA 412

Query: 418 KEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSV 477
           K QNV +NG+ ++E D+ S+ PDRD+YN ADFP E+T+AKFF+IKSYSEDDVHKSIKY+V
Sbjct: 413 KGQNVQSNGSNDEEKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNV 472

Query: 478 WASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ 537
           WASTPNGNKKLDAAY+EAQ+KS  CPVFL FSVNTSGQFVGLAEM G VDF+KNVEYWQQ
Sbjct: 473 WASTPNGNKKLDAAYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQ 532

Query: 538 DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           DKW GCF VKWH+VKDVPNSLLKHITLENNENKPVTNSRDTQEV
Sbjct: 533 DKWNGCFSVKWHVVKDVPNSLLKHITLENNENKPVTNSRDTQEV 576

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525319|ref|XP_003531272.1| PREDICTED: uncharacterized protein LOC100819200 isoform 1 [Glycine max]

 Score =  837 bits (2163), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/587 (72%), Positives = 483/587 (82%), Gaps = 9/587 (1%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPS-ER 59
           MAT  +PA + +DLLQKLSL++Q K LEI E TKK + NQYGSVDS NAA NGQIPS +R
Sbjct: 1   MATVASPADQATDLLQKLSLETQPKPLEIPEPTKKATGNQYGSVDSGNAA-NGQIPSYDR 59

Query: 60  SGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDN 119
           S TP L DF+DP MCY+PNGYPSTA+YYGGYDG   EWDDY+RYV+ +GV+MTSGVYGDN
Sbjct: 60  SVTPVLQDFIDPTMCYLPNGYPSTAYYYGGYDGTGNEWDDYSRYVNSEGVEMTSGVYGDN 119

Query: 120 GSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPV 179
           GSL+YHHGYGYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+TPTS+P++P+P 
Sbjct: 120 GSLLYHHGYGYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPA 179

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTY 237
               G++ TSVAADQKPLPVE+ NG SNGV+N G  KGNN +AP K   Q   F+S  + 
Sbjct: 180 VLPQGEVSTSVAADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASN 239

Query: 238 GRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVA 295
            R ++PGRGP SGYQDPR   DG+RSPIPWLD P+ SD   RPV+S T  SSIS  NN A
Sbjct: 240 ERVAMPGRGPTSGYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTA 299

Query: 296 SSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNG 355
           S R+Q +RPNS +MGLHHPRPM  MGA   F+N  RMYPNKLYGQYGNT RSG+G+G++G
Sbjct: 300 S-RSQTFRPNSQFMGLHHPRPMPAMGATHSFIN--RMYPNKLYGQYGNTVRSGMGYGTHG 356

Query: 356 YDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNAL 415
           YD R NGR WL+VD KYK+RGR  GYFGYGNEN+DGLNELNRGPRAKG KNQKG AP  L
Sbjct: 357 YDSRANGRAWLAVDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTIL 416

Query: 416 PVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKY 475
            VK QN+  +   ++E DK S  PDRD+YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY
Sbjct: 417 AVKGQNLPASLGTDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKY 476

Query: 476 SVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW 535
           +VWAST NGNKKLDAAY EAQQK   CPVFL FSVNTSGQFVGLAEM GPVDFNK+VEYW
Sbjct: 477 NVWASTQNGNKKLDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYW 536

Query: 536 QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVI 582
           QQDKW GCFP+KWH+VKDVPN+LL+HITL+NNENKPVTNSRDTQEV+
Sbjct: 537 QQDKWNGCFPLKWHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEVM 583

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525321|ref|XP_003531273.1| PREDICTED: uncharacterized protein LOC100819200 isoform 2 [Glycine max]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/586 (72%), Positives = 482/586 (82%), Gaps = 9/586 (1%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPS-ER 59
           MAT  +PA + +DLLQKLSL++Q K LEI E TKK + NQYGSVDS NAA NGQIPS +R
Sbjct: 1   MATVASPADQATDLLQKLSLETQPKPLEIPEPTKKATGNQYGSVDSGNAA-NGQIPSYDR 59

Query: 60  SGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDN 119
           S TP L DF+DP MCY+PNGYPSTA+YYGGYDG   EWDDY+RYV+ +GV+MTSGVYGDN
Sbjct: 60  SVTPVLQDFIDPTMCYLPNGYPSTAYYYGGYDGTGNEWDDYSRYVNSEGVEMTSGVYGDN 119

Query: 120 GSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPV 179
           GSL+YHHGYGYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+TPTS+P++P+P 
Sbjct: 120 GSLLYHHGYGYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPA 179

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTY 237
               G++ TSVAADQKPLPVE+ NG SNGV+N G  KGNN +AP K   Q   F+S  + 
Sbjct: 180 VLPQGEVSTSVAADQKPLPVEAANGNSNGVSNGGNAKGNNAAAPIKQANQNSSFSSKASN 239

Query: 238 GRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVA 295
            R ++PGRGP SGYQDPR   DG+RSPIPWLD P+ SD   RPV+S T  SSIS  NN A
Sbjct: 240 ERVAMPGRGPTSGYQDPRFGYDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTA 299

Query: 296 SSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNG 355
           S R+Q +RPNS +MGLHHPRPM  MGA   F+N  RMYPNKLYGQYGNT RSG+G+G++G
Sbjct: 300 S-RSQTFRPNSQFMGLHHPRPMPAMGATHSFIN--RMYPNKLYGQYGNTVRSGMGYGTHG 356

Query: 356 YDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNAL 415
           YD R NGR WL+VD KYK+RGR  GYFGYGNEN+DGLNELNRGPRAKG KNQKG AP  L
Sbjct: 357 YDSRANGRAWLAVDSKYKTRGRSGGYFGYGNENVDGLNELNRGPRAKGGKNQKGFAPTIL 416

Query: 416 PVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKY 475
            VK QN+  +   ++E DK S  PDRD+YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY
Sbjct: 417 AVKGQNLPASLGTDEEKDKTSTVPDRDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKY 476

Query: 476 SVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW 535
           +VWAST NGNKKLDAAY EAQQK   CPVFL FSVNTSGQFVGLAEM GPVDFNK+VEYW
Sbjct: 477 NVWASTQNGNKKLDAAYHEAQQKPGGCPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYW 536

Query: 536 QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           QQDKW GCFP+KWH+VKDVPN+LL+HITL+NNENKPVTNSRDTQEV
Sbjct: 537 QQDKWNGCFPLKWHVVKDVPNNLLRHITLDNNENKPVTNSRDTQEV 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512580|ref|XP_003524996.1| PREDICTED: uncharacterized protein LOC100807919 [Glycine max]

 Score =  814 bits (2103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/586 (71%), Positives = 474/586 (80%), Gaps = 9/586 (1%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPS-ER 59
           MAT   PA + +DLLQKLSL++Q K LEI E TKK + NQYGSVDS NAA NGQI S +R
Sbjct: 1   MATVANPADQATDLLQKLSLETQPKPLEIPEPTKKATGNQYGSVDSGNAA-NGQIQSYDR 59

Query: 60  SGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDN 119
           S TP L DF+DP MCY+PNGYPSTA+YYGGYDG   EWD+Y+RYV+ +GV+MTSGVYGDN
Sbjct: 60  SVTPVLQDFIDPTMCYLPNGYPSTAYYYGGYDGTGNEWDEYSRYVNSEGVEMTSGVYGDN 119

Query: 120 GSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPV 179
           GSL+YHHGYGYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+TPTS+P++P+P 
Sbjct: 120 GSLLYHHGYGYAPYGPYSPAGSPVPTMGNDGQLYGPQHYQYPPYFQPLTPTSAPFTPTPA 179

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTY 237
               G++ TSVAADQKPLPV++ NG SNGVAN G  KGNN +A  K   Q   F+S  + 
Sbjct: 180 VLPQGEVSTSVAADQKPLPVDAANGNSNGVANGGNAKGNNAAASIKQANQNSSFSSKASN 239

Query: 238 GRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVA 295
            R ++PGRGP SGYQDPR   DG+RSPIPWLD P+ SD   RPV+S T  SSIS  NN A
Sbjct: 240 ERVTMPGRGPTSGYQDPRFGFDGVRSPIPWLDAPLFSDGQPRPVSSTTITSSISGGNNTA 299

Query: 296 SSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNG 355
           S RN  +RPNS +MGLHHPRPM  MGA   F+N  RMYP+KLYGQYGNT RSG+G+G++G
Sbjct: 300 S-RNPTFRPNSQFMGLHHPRPMPAMGATHSFIN--RMYPSKLYGQYGNTVRSGMGYGTHG 356

Query: 356 YDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNAL 415
           YD RTNGR WL+VD KYK+RGR  GYFGYGNEN DGLNELNRGPRAKG KNQKG AP  L
Sbjct: 357 YDSRTNGRAWLAVDSKYKTRGRSGGYFGYGNENADGLNELNRGPRAKGGKNQKGFAPTIL 416

Query: 416 PVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKY 475
            VK Q +      ++E DK S   + D+YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY
Sbjct: 417 AVKGQTLPATLGTDEEKDKTSTILECDQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKY 476

Query: 476 SVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW 535
           +VWAST NGNKKLDAAYQEAQQK    PVFL FSVNTSGQFVGLAEM GPVDFNK+VEYW
Sbjct: 477 NVWASTQNGNKKLDAAYQEAQQKPGGTPVFLFFSVNTSGQFVGLAEMIGPVDFNKSVEYW 536

Query: 536 QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           QQDKW GCFP+KWHIVKDVPN+LL+HITL+NNENKPVTNSRDTQEV
Sbjct: 537 QQDKWNGCFPLKWHIVKDVPNNLLRHITLDNNENKPVTNSRDTQEV 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746505|emb|CBI16561.3| unnamed protein product [Vitis vinifera]

 Score =  790 bits (2041), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/582 (70%), Positives = 462/582 (79%), Gaps = 37/582 (6%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERS 60
           MA    PA + ++LLQKLSLDSQTK+LEI E TKKPS NQ+G+VD  +AA       ERS
Sbjct: 1   MAAVAPPADQAAELLQKLSLDSQTKTLEIPEPTKKPSGNQFGAVDGGDAANGQNQSCERS 60

Query: 61  GTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNG 120
            TP L +FMDP++CYVPNG   +++YYGGYDG   EW+DY+RY++ +GV+M +GVYGDNG
Sbjct: 61  VTPLLQEFMDPSVCYVPNG--YSSYYYGGYDGTTNEWEDYSRYMNPEGVEMPAGVYGDNG 118

Query: 121 SLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPV 179
           SLMYHHGYGYAPY PY PA SPVPT+G DGQLYGPQHYQYP  YFQP TPTS PY+PSP 
Sbjct: 119 SLMYHHGYGYAPYGPYPPAGSPVPTVGHDGQLYGPQHYQYPAPYFQPPTPTSGPYNPSPG 178

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGR 239
           AP PG++ TSVAADQKPL VE+ NG SNG+A+                            
Sbjct: 179 APPPGEVTTSVAADQKPLSVETANGNSNGIAS---------------------------- 210

Query: 240 GSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRN 299
           G+LPG  PASGYQDPR   DG+RSP+PWLDGPV SD RPV S +  SSISN NNV +SRN
Sbjct: 211 GALPGGVPASGYQDPRFAFDGLRSPLPWLDGPVFSDPRPVTSTSITSSISNANNVTASRN 270

Query: 300 QNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLR 359
              RP+SH+MGL HPRPMSGMG A GFMN  RMYPNKLYGQYGNT RSG+GFGSN YD R
Sbjct: 271 --LRPHSHFMGLQHPRPMSGMGTAHGFMN--RMYPNKLYGQYGNTVRSGLGFGSNAYDSR 326

Query: 360 TNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKE 419
           TNGR WL+VD KYK RGRG G+FGYGNENMDGLNELNRGPRAK +KNQKG AP  +  K 
Sbjct: 327 TNGRSWLAVDNKYKPRGRGIGFFGYGNENMDGLNELNRGPRAKSSKNQKGLAP--VTAKG 384

Query: 420 QNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWA 479
           QNV +NG+ ++E D+ S+ PDRD+YN ADFP E+T+AKFF+IKSYSEDDVHKSIKY+VWA
Sbjct: 385 QNVQSNGSNDEEKDRTSVFPDRDQYNHADFPVEHTEAKFFIIKSYSEDDVHKSIKYNVWA 444

Query: 480 STPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK 539
           STPNGNKKLDAAY+EAQ+KS  CPVFL FSVNTSGQFVGLAEM G VDF+KNVEYWQQDK
Sbjct: 445 STPNGNKKLDAAYREAQEKSAGCPVFLFFSVNTSGQFVGLAEMVGHVDFHKNVEYWQQDK 504

Query: 540 WTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           W GCF VKWH+VKDVPNSLLKHITLENNENKPVTNSRDTQEV
Sbjct: 505 WNGCFSVKWHVVKDVPNSLLKHITLENNENKPVTNSRDTQEV 546

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544682|ref|XP_002513402.1| yth domain-containing protein, putative [Ricinus communis] gi|223547310|gb|EEF48805.1| yth domain-containing protein, putative [Ricinus communis]

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/584 (67%), Positives = 450/584 (77%), Gaps = 23/584 (3%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQI-PSER 59
           MAT    A +T+DLLQ LSLDSQTK LEI E TKK S  QYG+VDS   +ANGQI P+ER
Sbjct: 1   MATVAPSAEKTADLLQNLSLDSQTKPLEIPEPTKKTSVYQYGAVDS-GVSANGQIQPTER 59

Query: 60  SGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDN 119
           S TPFL D MDP +CY+PNGYPS A+YYG Y+G   EWDDY+RY + +GV+MTSGVYGDN
Sbjct: 60  SLTPFLPDLMDPTVCYLPNGYPSPAYYYGSYNGTGSEWDDYSRYANTEGVEMTSGVYGDN 119

Query: 120 GSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPV 179
           GS+M+H+GYGYAPY PYSPA SPVPTMG DGQLYGPQHYQYP YFQP+ PTS P++P+  
Sbjct: 120 GSVMFHNGYGYAPYGPYSPAASPVPTMGNDGQLYGPQHYQYPPYFQPLNPTSGPFTPTQP 179

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGR 239
             + G+  TS A DQKP+ V++T     G+ N GGVKGNNGS P+KP YQ  +S + YGR
Sbjct: 180 TNSQGEPCTSAAPDQKPISVDATKSNCTGIVNGGGVKGNNGSTPYKPIYQN-SSLSAYGR 238

Query: 240 GSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRN 299
           G LPG  P SGYQDPR   DG                R      F+ S    NN  SS+N
Sbjct: 239 GVLPGGIPGSGYQDPRLGFDGQY--------------RSTGITPFSKS----NNTPSSKN 280

Query: 300 QNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLR 359
            N+R NS++MGL H  P+SG+G+  GF+N  RMY NK Y QYGNT+RSG+GFGS GYD R
Sbjct: 281 NNFRHNSNFMGLQHSGPISGVGSTHGFIN--RMYQNKFYSQYGNTYRSGMGFGSGGYDSR 338

Query: 360 TNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNALPVKE 419
            N  GWL+VDGKYK RGRGN YFGY NEN+DGLNELNRGPRAKG KNQKG AP  + VK 
Sbjct: 339 MNAHGWLAVDGKYKPRGRGNNYFGYRNENIDGLNELNRGPRAKGFKNQKGFAPVTIAVKG 398

Query: 420 QNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWA 479
           QN     T  +E D++S  PD ++YN+ADF E+YTDAKFF+IKSYSEDDVHKSIKY+VWA
Sbjct: 399 QNTPPIETITEEKDEMSAVPDLEQYNRADFLEDYTDAKFFIIKSYSEDDVHKSIKYNVWA 458

Query: 480 STPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDK 539
           STPNGNKKLDAAYQEAQQKS  CPVFL FSVNTSGQFVGLAEM GPVDF+KNVEYWQQDK
Sbjct: 459 STPNGNKKLDAAYQEAQQKSGGCPVFLFFSVNTSGQFVGLAEMGGPVDFHKNVEYWQQDK 518

Query: 540 WTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIK 583
           WTGCFPVKWHIVKD+PNSLLKHITLENNENKPVTNSRDTQE+++
Sbjct: 519 WTGCFPVKWHIVKDIPNSLLKHITLENNENKPVTNSRDTQEILE 562

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452630|ref|XP_004144062.1| PREDICTED: uncharacterized protein LOC101215929 [Cucumis sativus] gi|449493566|ref|XP_004159352.1| PREDICTED: uncharacterized LOC101215929 [Cucumis sativus]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/590 (71%), Positives = 480/590 (81%), Gaps = 16/590 (2%)

Query: 1   MATTVAP--AVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSE 58
           MAT  +P    + +DLLQKLSLD+Q K +EI E TKK SANQYGS+DS NAA + QIP+E
Sbjct: 1   MATVASPPSTDQAADLLQKLSLDAQAKPVEIPEPTKKQSANQYGSIDSGNAAIS-QIPNE 59

Query: 59  RSGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGD 118
           RS TPFL +FMDP+MCY+PNGYPS  +YYGG+DG   +WDDY+RY + DGV+MTSGVYGD
Sbjct: 60  RSVTPFLQEFMDPSMCYLPNGYPS--YYYGGFDGTANDWDDYSRYTNSDGVEMTSGVYGD 117

Query: 119 NGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTS--SPYSP 176
           NGSLMYHHGYGY PY PYSPA SPVP+MG DGQLYGPQHYQYP YFQP+TPTS     SP
Sbjct: 118 NGSLMYHHGYGYGPYGPYSPAASPVPSMGNDGQLYGPQHYQYPPYFQPLTPTSGPYTPSP 177

Query: 177 SPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSN 234
           + V PT GDI TS A +QKP+PVE+TN    G+ N GG KGNNGSAP K +YQ   F SN
Sbjct: 178 TTVPPTQGDISTSAATEQKPIPVETTNTNGTGLTNGGGTKGNNGSAPLKSSYQNSTFGSN 237

Query: 235 NTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISD--ARPVASNTFNSSISNVN 292
             Y RG+LPG  PASGYQDPR   DG+R+  PW DGP+ SD  +R V+S+T  SSISN N
Sbjct: 238 -AYARGALPGHIPASGYQDPRYGYDGLRNSFPWSDGPLYSDGQSRLVSSSTITSSISNAN 296

Query: 293 NVASSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFG 352
           N+ SSR+ ++RP SHY+G  HPRPMSGM   QG++N  RMYPNKLYGQ+GNT RSGVGF 
Sbjct: 297 NIPSSRSPSFRPGSHYVGFPHPRPMSGMNTTQGYIN--RMYPNKLYGQFGNTVRSGVGFA 354

Query: 353 SNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAP 412
           S+GYD R+NGR WL+VD K+K RGR  GY+GYGNENMDGLNELNRGPRAKG+KNQKG  P
Sbjct: 355 SHGYDSRSNGRVWLAVDNKFKPRGRNGGYYGYGNENMDGLNELNRGPRAKGSKNQKGFVP 414

Query: 413 NALPVKEQNVL-TNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHK 471
           + L VK Q +   N T E+E DK+S +PDRD+YNK+DFPEEY +AKFFVIKSYSEDDVHK
Sbjct: 415 SVLAVKGQLLPPMNATDEEEKDKVS-TPDRDQYNKSDFPEEYAEAKFFVIKSYSEDDVHK 473

Query: 472 SIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN 531
           SIKY+VWASTPNGNKKLDAAYQEAQ+K+  CP+FL FSVNTSGQFVGLAEM GPVDF KN
Sbjct: 474 SIKYNVWASTPNGNKKLDAAYQEAQEKAGGCPIFLFFSVNTSGQFVGLAEMIGPVDFQKN 533

Query: 532 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           +EYWQQDKW GCFPVKWH+VKDVPNSLLKHI LENNENKPVTNSRDTQEV
Sbjct: 534 LEYWQQDKWNGCFPVKWHVVKDVPNSLLKHIILENNENKPVTNSRDTQEV 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519269|ref|XP_003629923.1| YTH domain family protein [Medicago truncatula] gi|355523945|gb|AET04399.1| YTH domain family protein [Medicago truncatula]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/587 (66%), Positives = 444/587 (75%), Gaps = 45/587 (7%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPS-ER 59
           MA    PA + ++LLQK SL+SQ KSLEI E  KK + NQY   DS NA  NGQIPS ER
Sbjct: 1   MAAVANPADQAAELLQKFSLESQPKSLEIPEPNKKATGNQY---DSGNAL-NGQIPSYER 56

Query: 60  SGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDN 119
           S TP L DFMDP MCY+PNG    ++YYGGYDG   EW+    Y++ DGVD+TSGVYGDN
Sbjct: 57  SVTPVLQDFMDPAMCYLPNG--YPSYYYGGYDGTGSEWE----YLNADGVDLTSGVYGDN 110

Query: 120 GS-LMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSP 178
           GS L+YHHGYGYAPY PYSPA SPVPTMG DGQLYGPQHYQYP +FQP+TPTS P++P+ 
Sbjct: 111 GSSLVYHHGYGYAPYAPYSPAGSPVPTMGNDGQLYGPQHYQYPPFFQPLTPTSGPFTPTS 170

Query: 179 VAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYG 238
            A   GD  TSVAADQKPL VE+ NG +N   N    KG                     
Sbjct: 171 AAHPQGDNSTSVAADQKPLSVEAANGNTNAGTNGVNAKG--------------------- 209

Query: 239 RGSLPGRGPASG-YQDPRCNLDGMRSPIPWLDGPVISDA--RPVASNTFNSSISNVNNVA 295
                 R P SG YQDPR   DG RSP  WLD P+ SD   RPV+S   +SSIS+ NN  
Sbjct: 210 ------RTPTSGGYQDPRYGFDGARSPNLWLDTPIFSDGQPRPVSSTVISSSISSGNNGT 263

Query: 296 SSRNQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNG 355
           +SRNQ YRPNS YMGLHHPRP+  MGA  GF+N  RMYPN  YGQYGN+ RSG+G+G++G
Sbjct: 264 ASRNQTYRPNSQYMGLHHPRPIPAMGATPGFIN--RMYPNTRYGQYGNSVRSGMGYGTHG 321

Query: 356 YDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNAL 415
           YD RTNGR WL+VD KYK+RGR  GYFGYGNEN DGLNELNRGPRAKG KNQK   P  L
Sbjct: 322 YDSRTNGRAWLAVDNKYKTRGRNGGYFGYGNENTDGLNELNRGPRAKGGKNQKVFVPTVL 381

Query: 416 PVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKY 475
            VK QNV  N T ++E +K S +PDR++YNKADFPEEYTDAKFFVIKSYSEDD+HKSIKY
Sbjct: 382 TVKGQNVPVN-TVDEEKEKNSTTPDREQYNKADFPEEYTDAKFFVIKSYSEDDIHKSIKY 440

Query: 476 SVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW 535
           +VWAST NGNKKLDAAYQEAQQKS  CP+FLLFSVNTSGQFVGLAEM GPVDFNK++EYW
Sbjct: 441 NVWASTQNGNKKLDAAYQEAQQKSGGCPIFLLFSVNTSGQFVGLAEMTGPVDFNKSLEYW 500

Query: 536 QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVI 582
           QQDKW GCFP+KWHIVKDVPN++L+HITLENNENKPVTNSRDTQE++
Sbjct: 501 QQDKWMGCFPLKWHIVKDVPNNVLRHITLENNENKPVTNSRDTQEIM 547

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489688|gb|ABK96645.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/584 (64%), Positives = 433/584 (74%), Gaps = 37/584 (6%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERS 60
           MAT  + A +TSDLLQKLS+DSQTK+L++ E T K                    PS+RS
Sbjct: 1   MATLSSSAEQTSDLLQKLSIDSQTKTLDMPEPTNKIQ------------------PSDRS 42

Query: 61  GTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNG 120
            TP L++FMDP +CY+PNGYPS      G     GEWDDY++Y++ +GVDMTSG    NG
Sbjct: 43  VTPVLSNFMDPTVCYLPNGYPSYY---YGGYNGTGEWDDYSKYLNTEGVDMTSG----NG 95

Query: 121 SLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPV 179
           S MY HGY Y PY PYSPA SPVPTMG DGQLYGPQHYQYP  YFQP+TPTS P+ PS V
Sbjct: 96  SAMYPHGYWYGPYGPYSPAASPVPTMGNDGQLYGPQHYQYPTPYFQPLTPTSEPFIPSHV 155

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGR 239
           AP+ GD+  + AADQK LPVE+    SNG+AN G VKG NG+ P+KP YQ     N+YGR
Sbjct: 156 APSQGDLSITTAADQKSLPVETGKENSNGIANGGDVKGANGAVPYKPKYQ-----NSYGR 210

Query: 240 GSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNT-FNSSISNVNNVASSR 298
           GS     PASGY+D R   D ++  IP LD  V+SD   +  NT  +SS S  +N  SSR
Sbjct: 211 GSYTKGIPASGYKDLRSCFDRLQPDIPLLDSSVLSDG--LYRNTDISSSFSKASNAPSSR 268

Query: 299 NQNYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDL 358
           NQN+  NSH+MG  HP   SGMG+  G+MN  RMY NKLYGQYGN F+SGVGFGS GY+ 
Sbjct: 269 NQNFHQNSHFMGWQHPGLASGMGSTHGYMN--RMYSNKLYGQYGNGFKSGVGFGSGGYNA 326

Query: 359 RTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKG-AKNQKGSAPNALPV 417
             NG+GWL +D KYK +G+GNGYFG+ NEN+DGLNELNRGPRAKG  KNQKG  P+ + V
Sbjct: 327 GINGQGWLPIDSKYKPKGQGNGYFGFRNENIDGLNELNRGPRAKGYFKNQKGFVPSTVAV 386

Query: 418 KEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSV 477
           K Q+V ++    +E DK +  PDR++YNKADFP EY DAKFF+IKSYSEDDVHK IKY+V
Sbjct: 387 KGQSVPSSDANAEEKDKTTEVPDREQYNKADFPVEYVDAKFFIIKSYSEDDVHKCIKYNV 446

Query: 478 WASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ 537
           WASTPNGNKKLDAAYQEA QKS  CPVFLLFSVNTSGQFVGLAEM G VDF+K+VEYWQQ
Sbjct: 447 WASTPNGNKKLDAAYQEAGQKSGGCPVFLLFSVNTSGQFVGLAEMTGRVDFDKSVEYWQQ 506

Query: 538 DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           DKWTG FPVKWH VKDVPNSLLKHITLENNENKPVTNSRDTQEV
Sbjct: 507 DKWTGYFPVKWHFVKDVPNSLLKHITLENNENKPVTNSRDTQEV 550

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481843|ref|XP_002276915.2| PREDICTED: uncharacterized protein LOC100245287 [Vitis vinifera]

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/587 (61%), Positives = 424/587 (72%), Gaps = 26/587 (4%)

Query: 1   MATTVAPAVETSDLLQKLSLDSQTKSLEISEHTKKPSANQYGSVDSVNAAANGQIPSERS 60
           MAT   P+ + +DLLQKLSLD Q KSLE+SE  KK     + SVDS + A     P ERS
Sbjct: 1   MATVAPPSDQAADLLQKLSLDPQAKSLEVSEQAKK-----FVSVDSGDLANGLGKPFERS 55

Query: 61  GTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGDNG 120
            T    DF+DPNMCY+PNGYPST ++  GYDG + EW D        GV+M  GVYGD  
Sbjct: 56  ATHLHQDFVDPNMCYLPNGYPSTYYFAPGYDGQMNEWGD--------GVEMPPGVYGD-- 105

Query: 121 SLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPH-YFQPITPTSSPYSPSPV 179
             +YHHG+GY PY  Y P  SPVPTMG DGQLYGPQHYQYP  Y+QP  P   PY+PS V
Sbjct: 106 --IYHHGFGY-PYGTYPPPGSPVPTMGHDGQLYGPQHYQYPTPYYQPQAPNGGPYAPSQV 162

Query: 180 APTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQ--PFNSNNTY 237
               GD+ TSVA DQ PL VE+  G +N + N G V GNNG    +P++Q    +SN +Y
Sbjct: 163 TAPQGDVSTSVAPDQVPLSVEAAKGNTNNLVNGGNVNGNNGPKALRPSHQNSSLSSNGSY 222

Query: 238 GRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASS 297
           GR SLP   P+SGYQDPR   DG RS IP  D      ++ VAS  F+S +S+ NN  S 
Sbjct: 223 GRASLPTGVPSSGYQDPRFGFDGTRSLIPSADMFSEGQSKHVASVGFSSPVSHANNFPSG 282

Query: 298 RNQNYRPNSHYM--GLHHPRPMSGMGAAQGFMNMNRMYPN-KLYGQYGNTFRSGVGFGSN 354
           RNQN+RP    M  GL H R  SG+G A GFM+  RMYPN ++Y QYGN FR+G GFGSN
Sbjct: 283 RNQNFRPIPQLMSLGLQHARAASGLGQASGFMS--RMYPNNRMYDQYGNAFRTGSGFGSN 340

Query: 355 GYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNENMDGLNELNRGPRAKGAKNQKGSAPNA 414
           GYD RT+GRGWL+VD +Y+++ R N   GYGNENMDGLNELNRGPRAKG KNQKG  P  
Sbjct: 341 GYDSRTSGRGWLTVDSRYRNKSRANSVLGYGNENMDGLNELNRGPRAKGFKNQKGFGPVT 400

Query: 415 LPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIK 474
           L V+ QN+  NG   + +  ++L PD+++YN  DFPE Y+DAKFF+IKSYSEDDVHKSIK
Sbjct: 401 LAVRGQNLQLNGNNSNSDGNLTLVPDKEQYNSEDFPENYSDAKFFIIKSYSEDDVHKSIK 460

Query: 475 YSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY 534
           Y++WAST NGNKKLDAAYQEAQ KS SCP+FLLFSVN SGQFVG+AEM G VDFN+++EY
Sbjct: 461 YNMWASTANGNKKLDAAYQEAQGKSGSCPIFLLFSVNASGQFVGVAEMVGSVDFNRSLEY 520

Query: 535 WQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           WQQDKWTGCFPVKWH++KD+PNSLLKHITLENNENKPVTNSRDTQEV
Sbjct: 521 WQQDKWTGCFPVKWHVIKDIPNSLLKHITLENNENKPVTNSRDTQEV 567

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	585
TAIR|locus:2092815	667	ECT2 "evolutionarily conserved	0.960	0.842	0.517	2.3e-149
TAIR|locus:2159391	495	ECT3 "AT5G61020" [Arabidopsis	0.456	0.539	0.610	3.3e-89
TAIR|locus:2095938	428	ECT1 "evolutionarily conserved	0.452	0.619	0.531	6.6e-77
TAIR|locus:2089280	634	ECT5 "AT3G13060" [Arabidopsis	0.435	0.402	0.505	1.4e-76
TAIR|locus:2088995	595	ECT6 "AT3G17330" [Arabidopsis	0.305	0.300	0.608	1.3e-61
TAIR|locus:2207405	528	ECT8 "AT1G79270" [Arabidopsis	0.317	0.352	0.589	4.2e-61
TAIR|locus:2023807	639	ECT7 "AT1G48110" [Arabidopsis	0.311	0.284	0.578	7.8e-60
TAIR|locus:2161213	528	ECT10 "evolutionarily conserve	0.300	0.333	0.553	4.2e-59
TAIR|locus:2010494	539	ECT9 "AT1G27960" [Arabidopsis	0.247	0.269	0.705	8.8e-57
TAIR|locus:2024286	470	ECT11 "AT1G09810" [Arabidopsis	0.302	0.376	0.566	3.5e-52

TAIR|locus:2092815 ECT2 "evolutionarily conserved C-terminal region 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 303/586 (51%), Positives = 357/586 (60%)

Query:     1 MATTVAPAVEXXXXXXXXXXXXXXXXXEISEHTKKPSANQYGSVDSVNAAANGQIPS-ER 59
             MAT   PA +                 EI E  KK +  QYG VD      +GQ+PS +R
Sbjct:     1 MATVAPPADQATDLLQKLSLDSPAKASEIPEPNKKTAVYQYGGVD-----VHGQVPSYDR 55

Query:    60 SGTPFL-NDFMDPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQDGVDMTSGVYGD 118
             S TP L +D  DP++CYVPN Y +   YY  Y G+  EW DY  Y + +GVDM SG+YG+
Sbjct:    56 SLTPMLPSDAADPSVCYVPNPY-NPYQYYNVY-GSGQEWTDYPAYTNPEGVDMNSGIYGE 113

Query:   119 NGSLMXXXXXXXXXXXXXXXXXXXXXXMGTDGQLYGPQHYQYPHYFQXXXXXXXXXXXXX 178
             NG+++                      +G +GQLYG Q YQYP+YF              
Sbjct:   114 NGTVVYPQGYGYAAYPYSPATSPAPQ-LGGEGQLYGAQQYQYPNYFPNSGPYASSVATPT 172

Query:   179 XXXXXGDIPTSVAADQKPLPVESTNGKSXXXXXXXXXXXXXXSAPFKPTYQP-FN-SNNT 236
                   + P  V    K LP +S N  S              SAP KPT Q   N S+N 
Sbjct:   173 QPDLSANKPAGV----KTLPADSNNVASAAGITKGSNG----SAPVKPTNQATLNTSSNL 224

Query:   237 YGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDA-RPVAXXXXXXXXXXXXXXX 295
             YG G+ PG G A+GYQDPR   +G  +P+PW DG   SD  RPV+               
Sbjct:   225 YGMGA-PGGGLAAGYQDPRYAYEGYYAPVPWHDGSKYSDVQRPVSGSGVASSYSKSSTVP 283

Query:   296 XXXXXXYRPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNG 355
                   YR NSHY  +H P  ++G G AQG+ N  RMY NKLYGQYG+T RS +G+GS+G
Sbjct:   284 SSRNQNYRSNSHYTSVHQPSSVTGYGTAQGYYN--RMYQNKLYGQYGSTGRSALGYGSSG 341

Query:   356 YDLRTNGRGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNAL 415
             YD RTNGRGW + D KY+S             N+DGLNELNRGPRAKG KNQKG+  ++L
Sbjct:   342 YDSRTNGRGWAATDNKYRSWGRGNSYYYGNENNVDGLNELNRGPRAKGTKNQKGNLDDSL 401

Query:   416 PVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKY 475
              VKEQ   +N T   E D   + PDR++YNK DFP +Y +A FF+IKSYSEDDVHKSIKY
Sbjct:   402 EVKEQTGESNVTEVGEADNTCVVPDREQYNKEDFPVDYANAMFFIIKSYSEDDVHKSIKY 461

Query:   476 SVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW 535
             +VWASTPNGNKKL AAYQEAQQK+  CP+FL FSVN SGQFVGLAEM GPVDFN NVEYW
Sbjct:   462 NVWASTPNGNKKLAAAYQEAQQKAGGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYW 521

Query:   536 QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
             QQDKWTG FP+KWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV
Sbjct:   522 QQDKWTGSFPLKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 567

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2159391 ECT3 "AT5G61020" [Arabidopsis thaliana (taxid:3702)]

 Score = 838 (300.0 bits), Expect = 3.3e-89, Sum P(3) = 3.3e-89
 Identities = 171/280 (61%), Positives = 198/280 (70%)

Query:   303 RPNSHYMGLHHPRPMSGMGAAQGFMNMNRMYPNKLYGQYGNTFRSGVGFGSNGYDLRTNG 362
             + N  Y  L      +G G + G   M+ +Y N  YG  G  + +G G+GS GYD     
Sbjct:   119 KTNLQYQYLTQQGRSAGNGQSYGGY-MDNIYSN--YGMCG-PYTNGYGYGSYGYDSWKYM 174

Query:   363 RGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPVKEQNV 422
               W +V+  YK             EN++GLNE+NRGPRAKG  +Q GS   A+ +KEQ V
Sbjct:   175 PNWYAVNNTYKPRNGYHGYGK---ENIEGLNEMNRGPRAKGFNSQDGSKVMAVSLKEQRV 231

Query:   423 L-TNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWAST 481
               T   +ED    +SL   +D YNK DFPE YT+AKF+VIKSYSEDD+HKSIKYSVW+ST
Sbjct:   232 TETEKLSED----VSLLDPKD-YNKIDFPETYTEAKFYVIKSYSEDDIHKSIKYSVWSST 286

Query:   482 PNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWT 541
             PNGNKKLDA+Y EA+QKS  CPVFLLFSVNTSGQFVGLAEM GPVDFNK VEYWQQDKW 
Sbjct:   287 PNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWI 346

Query:   542 GCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
             GCFPVKWH VKD+PNS L+HITLENNENKPVTNSRDTQEV
Sbjct:   347 GCFPVKWHFVKDIPNSSLRHITLENNENKPVTNSRDTQEV 386

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=RCA

TAIR|locus:2095938 ECT1 "evolutionarily conserved C-terminal region 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
 Identities = 151/284 (53%), Positives = 178/284 (62%)

Query:   302 YRPNSHYMGLHH---PRPMSGMGAAQGFMNMNRMYPNK-LYGQYGNTFRSGVGFGSNGYD 357
             Y  NS++    H   P     + +       + +Y N  LYG YGN   SG  +G+ GYD
Sbjct:   102 YDRNSNHSSFSHLMNPHSSQEVPSFDQLGYNDHLYSNHGLYGLYGNVIDSGHAYGTFGYD 161

Query:   358 LRTNGRGWLSVDGKYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPV 417
                 GRGW  VDG Y+             E  D LNEL RGPR+   KN +         
Sbjct:   162 SWKLGRGWYPVDG-YRKTRSFNHGRGYSDEKADRLNELCRGPRSSDFKNPQ--------- 211

Query:   418 KEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSV 477
                 VL +   +     +S + D   YN  +FPE +  AKFFVIKSYSEDDVH  IKY  
Sbjct:   212 ----VLNSSMLDAMKQDVS-AVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIKYGA 266

Query:   478 WASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQ 537
             W+STP GNKKL+AAY EA++ S+ CPV+LLFSVN SGQFVGLAEM GPVDFNK +EYWQQ
Sbjct:   267 WSSTPTGNKKLNAAYYEAKENSQECPVYLLFSVNASGQFVGLAEMVGPVDFNKTMEYWQQ 326

Query:   538 DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
             DKW GCFPVKWHI+KD+PNSLL+HITL NNENKPVTNSRDTQEV
Sbjct:   327 DKWIGCFPVKWHIIKDIPNSLLRHITLANNENKPVTNSRDTQEV 370

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019722 "calcium-mediated signaling" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

TAIR|locus:2089280 ECT5 "AT3G13060" [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
 Identities = 143/283 (50%), Positives = 178/283 (62%)

Query:   314 PRPMSGMGAAQGFMNMNRMYPNKLYGQYG---NTFRSGV------GFGSN-GYDLRTN-- 361
             P+P+   G+    + M        YG +G   N++  G       G GSN G  L +N  
Sbjct:   254 PQPLGSYGSYGQNIPMGSQRQRSFYG-FGSGSNSYNRGYMHSGGRGQGSNYGSRLISNVG 312

Query:   362 --GRGWLSVDG-KYKSXXXXXXXXXXXXENMDGLNELNRGPRAKGAKNQKGSAPNALPVK 418
                +GW+ VD  + +                D LNE NRGPRA   K Q         V 
Sbjct:   313 MGNQGWIGVDNSRGRGRVSDPSLGGAYNGTFDILNEQNRGPRASKPKTQ---------VL 363

Query:   419 EQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVW 478
             E+  L +     +N+K S + + +E N ADF  +YT+AK F+IKSYSED+VHKSIKY+VW
Sbjct:   364 EE--LDSAADSKKNNKGS-AKEHEESNNADFVTDYTNAKLFIIKSYSEDNVHKSIKYNVW 420

Query:   479 ASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQD 538
             ASTPNGNKKLDAAY+EA+ +   CP+FLLFSVN S QF G+AEM GPVDF K+V+YWQQD
Sbjct:   421 ASTPNGNKKLDAAYREAKDEKEPCPLFLLFSVNASSQFCGVAEMVGPVDFEKSVDYWQQD 480

Query:   539 KWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEV 581
             KW+G FPVKWHI+KDVPNS  +HI LENN+NKPVTNSRDTQEV
Sbjct:   481 KWSGQFPVKWHIIKDVPNSQFRHIILENNDNKPVTNSRDTQEV 523

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2088995 ECT6 "AT3G17330" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
 Identities = 118/194 (60%), Positives = 146/194 (75%)

Query:   393 NELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEE 452
             +E NRG R + ++NQ       L VK       G A+ E + I ++PDR  YNK DF  E
Sbjct:   218 SEQNRGSRTRRSRNQ-------LIVKAYTTKA-GNADAEGN-IVINPDR--YNKEDFSIE 266

Query:   453 YTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ----QKSRSCPVFLLF 508
             Y+DA+FFVIKSYSEDDVHKSIKY VW+ST NGNKKL + Y++AQ    +KSR CP+FL F
Sbjct:   267 YSDARFFVIKSYSEDDVHKSIKYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFF 326

Query:   509 SVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 568
             SVN+SG F G+AEM GPV F++++++WQQDKW+G FPVKWHI+KDVPNS  +HI L NNE
Sbjct:   327 SVNSSGLFCGVAEMTGPVSFDRDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILHNNE 386

Query:   569 NKPVTNSRDTQEVI 582
             NKPVTNSRDTQE+I
Sbjct:   387 NKPVTNSRDTQEII 400

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2207405 ECT8 "AT1G79270" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
 Identities = 119/202 (58%), Positives = 145/202 (71%)

Query:   395 LNRGP--RAKGAKNQKGSAPNALPVKEQNVLTNGTAE------DENDK---ISLSPDRDE 443
             LNR    +AK    + G++ N L    Q+ +TNG  E      + N++   +     RD+
Sbjct:   250 LNRDETEKAKARTKENGTSMNDL-ANGQDHITNGECESCSLDAEGNERSNGVGSVIRRDQ 308

Query:   444 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQK----S 499
             YN   F  +Y +A FFVIKSYSEDD+HKSIKY+VW+ST NGNKKLD+AYQE+Q+K    S
Sbjct:   309 YNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQKKAADKS 368

Query:   500 RSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLL 559
               CPVFL FSVN SGQF G+AEM G VD+ K++E+WQQDKWTG FPVKWHI+KDVPN  L
Sbjct:   369 GKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEFWQQDKWTGYFPVKWHIIKDVPNPQL 428

Query:   560 KHITLENNENKPVTNSRDTQEV 581
             +HI LENNENKPVTNSRDTQEV
Sbjct:   429 RHIILENNENKPVTNSRDTQEV 450

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2023807 ECT7 "AT1G48110" [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 7.8e-60, Sum P(2) = 7.8e-60
 Identities = 114/197 (57%), Positives = 145/197 (73%)

Query:   390 DGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADF 449
             D + E NRG R++   NQ       L VK       G A+ E + I ++P   +YNK D 
Sbjct:   266 DTVREQNRGRRSRALGNQ-------LIVKAYTTKA-GNADAEGN-IVINPS--QYNKEDL 314

Query:   450 PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQ----QKSRSCPVF 505
               +Y++AKFFVIKSYSEDDVHKSIKY+VW+ST +GNKKL +AY++AQ    +KS  CP+F
Sbjct:   315 RIDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLHGNKKLQSAYEDAQRIATEKSCECPIF 374

Query:   506 LLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 565
             L FSVN SG F G+AEM GPV F+K++++WQQDKW+G FPVKWHI+KDVPNS  +HI L+
Sbjct:   375 LFFSVNASGLFCGMAEMTGPVSFDKDMDFWQQDKWSGSFPVKWHIIKDVPNSYFRHIILQ 434

Query:   566 NNENKPVTNSRDTQEVI 582
             NNENKPVTNSRDTQE++
Sbjct:   435 NNENKPVTNSRDTQEIM 451

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161213 ECT10 "evolutionarily conserved C-terminal region 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
 Identities = 103/186 (55%), Positives = 134/186 (72%)

Query:   396 NRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTD 455
             NRGPRA      K S+    P       T G  +  +D  +  P+   YN  +F  +Y +
Sbjct:   275 NRGPRASSRVKSKNSSK---PCS-----TIG--DSASDSSTAGPNPSLYNHPEFVTDYKN 324

Query:   456 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQ 515
             AKFF++KS+SED+VH+SIKY+VWASTP+GNKKLD AY++A++    CP+FL FSVN SGQ
Sbjct:   325 AKFFIVKSFSEDNVHRSIKYNVWASTPHGNKKLDTAYRDAEKMGGKCPIFLFFSVNASGQ 384

Query:   516 FVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNS 575
             F G++EM GPVDF K+  YWQQD+W+G FPVKWHIVKD+PN+   HI L+NN+NKPVT+S
Sbjct:   385 FCGVSEMVGPVDFEKDAGYWQQDRWSGQFPVKWHIVKDIPNNRFCHILLQNNDNKPVTHS 444

Query:   576 RDTQEV 581
             RD+QEV
Sbjct:   445 RDSQEV 450

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2010494 ECT9 "AT1G27960" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 103/146 (70%), Positives = 124/146 (84%)

Query:   437 LSPDR-DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEA 495
             +S DR D + + +   ++ DAKFFVIKSYSED+VHKSIK+ VWAST NGNKKLDAAY+EA
Sbjct:   310 ISYDRVDRFCQQELLSQFRDAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREA 369

Query:   496 QQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVP 555
             ++K  +CPVFLLFSVN S QF G+AEM GPVDFN +VEYWQQD+W+G FPV+W IVKDVP
Sbjct:   370 KKKDVACPVFLLFSVNASSQFCGVAEMVGPVDFNTSVEYWQQDRWSGHFPVQWLIVKDVP 429

Query:   556 NSLLKHITLENNENKPVTNSRDTQEV 581
             NSL +HI +E+N+NKPVTNSRDTQEV
Sbjct:   430 NSLFRHIIIESNDNKPVTNSRDTQEV 455

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016571 "histone methylation" evidence=RCA

TAIR|locus:2024286 ECT11 "AT1G09810" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 111/196 (56%), Positives = 142/196 (72%)

Query:   390 DGLNELNRGPRAKGAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADF 449
             D L EL  GPRA  AK +  S  +  P+K+            N+  +L+  R+ YN  DF
Sbjct:   180 DYLVELKCGPRAN-AKTRPPSESS--PLKQ------------NNSFALALRREMYNLPDF 224

Query:   450 PEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKS----RSCPVF 505
               +Y DAKFFVIKSYSEDDVHKSIKYSVW+ST NGNKKLDAA+++A+ K+    +  P+F
Sbjct:   225 QTDYEDAKFFVIKSYSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIF 284

Query:   506 LLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE 565
             L FSVN S QFVGLAEM G VDFNK++++WQ DKW+G FPV+WH+VKD+PN  L+HI L+
Sbjct:   285 LFFSVNASRQFVGLAEMVGYVDFNKDLDFWQVDKWSGFFPVEWHVVKDIPNWELRHIILD 344

Query:   566 NNENKPVTNSRDTQEV 581
             NNE+KPVT++RDT E+
Sbjct:   345 NNEDKPVTHTRDTHEI 360

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I0019 hypothetical protein (538 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	585
pfam04146	135	pfam04146, YTH, YT521-B-like domain	3e-63

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  203 bits (519), Expect = 3e-63
 Identities = 68/127 (53%), Positives = 88/127 (69%), Gaps = 8/127 (6%)

Query: 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 516
           +FF+IKSY+ED+VH SIKY VWAST + NKKL+ A++EA+      PV+L+FSVN SG+F
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAE------PVYLIFSVNKSGKF 54

Query: 517 VGLAEMAGPVDFNK--NVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTN 574
            G A M  P+DF+   N +     KW G F V+W  VKD+P   L+H+   NNENKPVT 
Sbjct: 55  CGYARMTSPIDFDSTANSQDSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKPVTI 114

Query: 575 SRDTQEV 581
           SRD QE+
Sbjct: 115 SRDGQEI 121

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	585
KOG1901	487	consensus Uncharacterized high-glucose-regulated p	100.0
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1902	441	consensus Putative signal transduction protein inv	100.0
PRK00809	144	hypothetical protein; Provisional	92.52

>KOG1901 consensus Uncharacterized high-glucose-regulated protein [General function prediction only]

Probab=100.00  E-value=7.4e-69  Score=570.78  Aligned_cols=416  Identities=42%  Similarity=0.628  Sum_probs=286.7

Q ss_pred             CCCCCCcccccccCCCCccCccccCCCCccee-ccCCCC--CCCCCCCCCCCCCCcCCCCCccccCCCCCCC-CCCCCCC
Q 007902           93 NVGEWDDYTRYVSQDGVDMTSGVYGDNGSLMY-HHGYGY--APYPPYSPATSPVPTMGTDGQLYGPQHYQYP-HYFQPIT  168 (585)
Q Consensus        93 ~~~eW~~y~~Yvn~dg~e~~~~vy~dn~Sl~y-~~Gygy--~pYg~Ysp~~sP~p~~g~DgQlyg~Q~y~yp-~yyq~~~  168 (585)
                      .+.+ ++|+-|.|.|++.+. ++.+.+.+++. ...+++  .||.|+++   .++++|.|++++.+|++.+. ++|-   
T Consensus         3 ~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~~~~~~~~~---   74 (487)
T KOG1901|consen    3 SGLY-TDYGVVSNSESVQPD-GGQGQESANTSYPTSLGYHSFPYNPSSY---AASSLGSDGSLGEPQQNPLYSPSYG---   74 (487)
T ss_pred             CCCc-CCccccccCcccccC-CccCCCcccccCCccccccCCCCCCCcc---cccCCCCCccccccccccccCCCcC---
Confidence            4556 899999999994333 55555555544 333343  23444433   34588999999999999997 5554   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCccCCCCCCcccccCCCCCCcccCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007902          169 PTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPA  248 (585)
Q Consensus       169 ~~~~~y~~~~~~~~q~e~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~~~~~~~~~~p~~~~~~~~gsyg~g~~~~~~p~  248 (585)
                      +...|+........++++.......   ...+..+..            .  +.+..|...   ..+.++ ..-+.+.|.
T Consensus        75 ~~s~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------~--~~~~~p~~~---~~~~~~-~~~~~~~~~  133 (487)
T KOG1901|consen   75 PVSLPTASTSGSSTFSNLTLRKAPG---FSSSGPKQG------------G--SMPSDPRGS---AQRNSS-ISASPGYPP  133 (487)
T ss_pred             cccCccccccCcccccchhhhcccc---ccccccccC------------c--CCCCCCccc---cccccc-ccCCCCCCC
Confidence            2222333333333344443322221   111111111            0  122222222   111111 122223444


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCcccccccccCCcccCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q 007902          249 SGYQDPRCNLDGMRSPIPWLDGPVISDARPVASNTFNSSISNVNNVASSRNQNYRPNSHYMGLHHPRPMSGMG-AAQGFM  327 (585)
Q Consensus       249 sgy~~~~~~~~g~~~~~~w~d~~~~s~~~~~~~~~~sss~~~~~~~~~~~nq~~~~~~~~~~~~~~~~~~~~~-~~~~~~  327 (585)
                      .+|.+|++.++.....                                 +..++..+.+++.+....+.+.++ ...+|.
T Consensus       134 ~~~~~P~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  180 (487)
T KOG1901|consen  134 LPYSAPKFASDLIPGK---------------------------------PPPPISGNTGPPTPDSKGPVSSSGHNAQGYY  180 (487)
T ss_pred             cccCCCccccccccCC---------------------------------CCCCccccCCCCCcccCCcccCCcccccccc
Confidence            5777777666641100                                 112222233333333334443332 345666


Q ss_pred             ccCcCCC-CcccCcCCCccccCCCCCCCCCCCCCCCccccccCCccccCCCCCCccCCCCC-CcccccccccCCCCCCCC
Q 007902          328 NMNRMYP-NKLYGQYGNTFRSGVGFGSNGYDLRTNGRGWLSVDGKYKSRGRGNGYFGYGNE-NMDGLNELNRGPRAKGAK  405 (585)
Q Consensus       328 ~~~~~yp-~~~y~~~g~~~~~~~~~g~~~~~~~~~~r~w~~~~~k~~~~~~~~~~~~~~~~-~~~~~~e~nrgpr~~~~~  405 (585)
                        +.++. .+.|+.+..+...+..|+...+.....+|+|..+++..+..+. .......++ ..+.++|+|||||+...+
T Consensus       181 --~~~~~~~~~~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~nrg~~s~~~~  257 (487)
T KOG1901|consen  181 --DQFSSQPGLYGSYQPTGGSGPPYGQSLYANQPKGRSPYGVDNSRPTWGI-NYPRLPSDEAGSDSLNEQNRGPRSSDSR  257 (487)
T ss_pred             --cccccCcccccCccccCCCCCccCcccccccccCCCCcccCCCcccccc-cCCCccccccccccccccccCccccccc
Confidence              45555 3456556655566788999999988999999999975554442 222223333 378899999999999999


Q ss_pred             CCCCCCCCcccccccccccCCCCcccCCcccCCCCCcCCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchh
Q 007902          406 NQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGN  485 (585)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qyN~~~f~~~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nn  485 (585)
                      ++.........+...+         ..+....++++++||+++|.+.+.++|||||||++|||||+||||+|||+|+++|
T Consensus       258 ~~~~~~~~~~~~~~~s---------~~~~~~~~~~~~~yn~~~f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GN  328 (487)
T KOG1901|consen  258 GQDINSSGPTEAGSAS---------APESNESVKRRDRYNPPDFLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGN  328 (487)
T ss_pred             CccccCCcchhccccc---------cccccccccChhhcCccccccccccceEEEEeccChhhhhhhcccceeecccCCc
Confidence            8876554333333211         1122256889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEeeCCCCCCCCchhhhcccCCCcceeeEEEeecCCCCcccccccC
Q 007902          486 KKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLE  565 (585)
Q Consensus       486 kKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM~S~Vdf~k~~~~Wqqdkw~G~F~VeWi~vkdVPf~~l~HI~N~  565 (585)
                      ||||+|||++++|.++||||||||||+||||||+|||+++|||+++++||+||||.|.|+||||+||||||..|+||+++
T Consensus       329 KkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdfn~~~~~WqQDKW~G~FpVKWhiVKDVPNs~lrHI~Le  408 (487)
T KOG1901|consen  329 KKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDFNKDMEYWQQDKWSGSFPVKWHIVKDVPNSQLRHIILE  408 (487)
T ss_pred             hhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceecccccchhhhcccceecceeeEEEeeCCccceeEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcccCCCCceec
Q 007902          566 NNENKPVTNSRDTQEVI  582 (585)
Q Consensus       566 ~NeNKPVt~SRDGQEIe  582 (585)
                      +|||||||++||+|||.
T Consensus       409 NNeNKPVTnSRDTQEV~  425 (487)
T KOG1901|consen  409 NNENKPVTNSRDTQEVP  425 (487)
T ss_pred             cCCCCCcccccccceec
Confidence            99999999999999994

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=2.1e-45  Score=337.62  Aligned_cols=124  Identities=49%  Similarity=0.878  Sum_probs=102.9

Q ss_pred             CceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEeeCCCCCCCCchh
Q 007902          455 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEY  534 (585)
Q Consensus       455 ~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM~S~Vdf~k~~~~  534 (585)
                      ++|||||||++++||++|+++|||+|+++++++|++||++++      +||||||||+|++|||||+|+++++++....+
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~------~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~   74 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESR------NVYLFFSVNGSGHFQGYARMTSPIDPDSPKPF   74 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-------EEEEEEETTTSEEEEEEEEECECCSSS----
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCC------CEEEEEeecCcceEEEEEEEccCCCCcccCcc
Confidence            589999999999999999999999999999999999999983      89999999999999999999999999988899


Q ss_pred             hh----cccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecCC
Q 007902          535 WQ----QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKF  584 (585)
Q Consensus       535 Wq----qdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~~  584 (585)
                      |.    ..+|.|.|+|+||++++|||+.++||+|++||||||+++||||||++.
T Consensus        75 w~~~~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~~  128 (140)
T PF04146_consen   75 WQQDSSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEPE  128 (140)
T ss_dssp             --SS-SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-CC
T ss_pred             ccccccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCHH
Confidence            95    369999999999999999999999999999999999999999999974

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]

Probab=100.00  E-value=2e-40  Score=339.27  Aligned_cols=136  Identities=36%  Similarity=0.608  Sum_probs=126.0

Q ss_pred             cCCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEE
Q 007902          442 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAE  521 (585)
Q Consensus       442 ~qyN~~~f~~~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~Ae  521 (585)
                      +++++...+.  ..+|||||||.|.+||.+|++.|||+|++.|++||+.||++.      ..||||||||.||||||||+
T Consensus        60 ~~~~~ss~~~--~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s------~~ViLIFSVn~SghFQG~Ar  131 (441)
T KOG1902|consen   60 DQTSKLKYVL--QDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSS------RSVILIFSVNESGHFQGFAR  131 (441)
T ss_pred             hhcccccccC--CceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhc------CcEEEEEEecccccchhhhh
Confidence            5566655555  689999999999999999999999999999999999999998      48999999999999999999


Q ss_pred             eeCCCCCCCCchhhhc-----ccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecCCC
Q 007902          522 MAGPVDFNKNVEYWQQ-----DKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKFL  585 (585)
Q Consensus       522 M~S~Vdf~k~~~~Wqq-----dkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~~~  585 (585)
                      |+|+|...+....|.+     ..|++.|+||||++++|||.++.||+|+|||||||+||||||||||.|
T Consensus       132 MsS~IG~~~~q~~W~~~~G~~a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~V  200 (441)
T KOG1902|consen  132 MSSEIGHGGSQIHWVLPAGMSAMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEV  200 (441)
T ss_pred             hcchhccCCCCccccccCCcccccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhH
Confidence            9999998888777865     679999999999999999999999999999999999999999999864

>PRK00809 hypothetical protein; Provisional

Probab=92.52  E-value=0.31  Score=46.27  Aligned_cols=93  Identities=11%  Similarity=0.219  Sum_probs=62.4

Q ss_pred             eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC------CCCCeeEEEEeeCCCCCCC
Q 007902          457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFNK  530 (585)
Q Consensus       457 RFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN------~Sg~FqG~AeM~S~Vdf~k  530 (585)
                      +|+|+=+ |+||+.++.++|||-.....-.-|.+    .    .....+||++-+      .-..|.|+|++++..-.+.
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~----M----k~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D~   72 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK----V----KPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYEDS   72 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh----C----CCCCEEEEEECCccCCCCCCceEEEEEEEecCcccCC
Confidence            6777766 99999999999999996532222221    1    234788888887      5799999999998742222


Q ss_pred             Cchhhh------cccCCCcceeeEEEeec--CCCCcc
Q 007902          531 NVEYWQ------QDKWTGCFPVKWHIVKD--VPNSLL  559 (585)
Q Consensus       531 ~~~~Wq------qdkw~G~F~VeWi~vkd--VPf~~l  559 (585)
                      + .+|.      .+.+--..+|+++.+.+  ||.+.|
T Consensus        73 t-~~~p~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L  108 (144)
T PRK00809         73 T-PIFPAEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL  108 (144)
T ss_pred             c-cCCCccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence            2 2232      12222467899998888  776655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	585
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		2e-12
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		1e-10

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 12/133 (9%)
Query: 455 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSG 514
           DA+FF+IKS + ++V  +    VW++ P   KKL+ A++ A+       V L+FSV  SG
Sbjct: 25  DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 78
Query: 515 QFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNE 568
           +F G A ++       +  +W            G F + W   +++P +   H+T   NE
Sbjct: 79  KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 138
Query: 569 NKPVTNSRDTQEV 581
           +KPV   RD QE+
Sbjct: 139 HKPVKIGRDGQEI 151

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 7/125 (5%)
Query: 457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF 516
           ++F++KS +  ++  S +  +W++TP+  +KL+ A+ E      S  V+L+FSV  SG F
Sbjct: 9   RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWE------SSIVYLVFSVQGSGHF 62
Query: 517 VGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSR 576
            G + M+  +   K+ + W      G F V+W   + +P     H+    N+NK V  SR
Sbjct: 63  QGFSRMSSEIGREKSQD-WGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISR 121
Query: 577 DTQEV 581
           D QE+
Sbjct: 122 DGQEL 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	585
2yu6_A	141	YTH domain-containing protein 2; structural genomi	1e-56
2yud_A	180	YTH domain-containing protein 1; structure genomic	1e-53
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	5e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	8e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  185 bits (472), Expect = 1e-56
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 7/130 (5%)

Query: 452 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN 511
             +  ++F++KS +  ++  S +  +W++TP+  +KL+ A+ E+        V+L+FSV 
Sbjct: 4   GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQ 57

Query: 512 TSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKP 571
            SG F G + M+  +   K+   W      G F V+W   + +P     H+    N+NK 
Sbjct: 58  GSGHFQGFSRMSSEIGREKSQ-DWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116

Query: 572 VTNSRDTQEV 581
           V  SRD QE+
Sbjct: 117 VQISRDGQEL 126

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  179 bits (456), Expect = 1e-53
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 14/150 (9%)

Query: 438 SPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQ 497
           +  +D+ +K  +     DA+FF+IKS + ++V  +    VW++ P   KKL+ A++ A+ 
Sbjct: 10  AVRKDQTSKLKYV--LQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR- 66

Query: 498 KSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIV 551
                 V L+FSV  SG+F G A ++       +  +W            G F + W   
Sbjct: 67  -----SVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICR 121

Query: 552 KDVPNSLLKHITLENNENKPVTNSRDTQEV 581
           +++P +   H+T   NE+KPV   RD QE+
Sbjct: 122 RELPFTKSAHLTNPWNEHKPVKIGRDGQEI 151

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 62/266 (23%), Positives = 87/266 (32%), Gaps = 27/266 (10%)

Query: 49   AAANGQIPSERSGTPFLNDFM-DPNMCYVPNGYPSTAFYYGGYDGNVGEWDDYTRYVSQD 107
            +        E +GTP+    M D      P+    +    GG +G  G  D      +  
Sbjct: 1471 SGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASP 1530

Query: 108  GVDMTSGVYGDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPI 167
               + S  Y    S     GYG    P YSP +SP  +         P        + P 
Sbjct: 1531 YKGVQSPGYTSPFSSAMSPGYGLTS-PSYSP-SSPGYSTSPAYMPSSPS-------YSPT 1581

Query: 168  TPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPT 227
            +P+ SP SPS    +P   PTS        P  S    S    +      +   +P  P+
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTS--------PSYSATSPSYSPTSPSYSPTSPSYSPTSPS 1633

Query: 228  YQPFNSNNTYGRGSL------PGRGPASGYQDPRCNLDGMRSPIPWLDGPVISDARPVAS 281
            Y P  ++ +Y   S       P   P S    P        SP      P  S   P  S
Sbjct: 1634 YSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691

Query: 282  NTFNSSISNVNNVASSRNQNYRPNSH 307
             T + S S  +   S  + +Y P S 
Sbjct: 1692 PT-SPSYSPTSPSYSPTSPSYSPTSP 1716

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.2 bits (114), Expect = 8e-06
 Identities = 55/274 (20%), Positives = 83/274 (30%), Gaps = 27/274 (9%)

Query: 48   NAAANGQI-----PSER--------SGTPFLNDFMDPNMCYVPNGYPSTAFYYGGYDGNV 94
             A A+ ++      SE          GT   +  +D                  G DG V
Sbjct: 1411 EAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGV 1470

Query: 95   GEWDDYTRYVSQDGVDMTSGVY--GDNGSLMYHHGYGYAPYPPYSPATSPVPTMGTDGQL 152
              + + +  V+ D       ++    +         G+  Y       +  P        
Sbjct: 1471 TPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAP 1530

Query: 153  YGPQHYQYPHYFQPITPTSSPYSPSPVAPTPGDIPTSVAADQKPLPVESTNGKSNGVANA 212
              P        F P +PT SP SP+    +P   PTS        P  S    S    + 
Sbjct: 1531 TSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTS--------PSYSPTSPSYSPTSP 1582

Query: 213  GGVKGNNGSAPFKPTYQPFNSNNTYGRGSLPGRGPASGYQDPRCNLDGMRSPIPWLDGPV 272
                 +   +P  P+Y P  ++ +Y   S P   P S    P        SP      P 
Sbjct: 1583 SYSPTSPSYSPTSPSYSP--TSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1639

Query: 273  ISDARPVASNTFNSSISNVNNVASSRNQNYRPNS 306
             S   P  S T + S S  +   S  + +Y P S
Sbjct: 1640 YSPTSPSYSPT-SPSYSPTSPAYSPTSPSYSPTS 1672

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 50/200 (25%)

Query: 419 EQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIK---- 474
            +++L+     +E D I +S D             T   F+ + S  E+ V K ++    
Sbjct: 42  PKSILSK----EEIDHIIMSKDA---------VSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 475 ------YSVWASTPNGNKKLDAAYQEAQQK-SRSCPVFLLFSVN---------------T 512
                  S   +       +   Y E + +      VF  ++V+                
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 513 SGQFVGLAEMAGPVDFNKNV---EYWQQDKWTGCFP--VKWHIVK--DVPNSLLKHI-TL 564
             + V +  + G     K     +     K        + W  +K  + P ++L+ +  L
Sbjct: 149 PAKNVLIDGVLG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 565 ENNENKPVTNSRDTQEVIKF 584
               +   T+  D    IK 
Sbjct: 206 LYQIDPNWTSRSDHSSNIKL 225

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 20/148 (13%), Positives = 30/148 (20%), Gaps = 2/148 (1%)

Query: 123 MYHHGYGYAPYPPYSPATSPVPTMGTDGQLYGPQHYQYPHYFQPITPTSSPYSPSPVAPT 182
           M HH     P        +  P        + P                 P    P    
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQ--PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQ 58

Query: 183 PGDIPTSVAADQKPLPVESTNGKSNGVANAGGVKGNNGSAPFKPTYQPFNSNNTYGRGSL 242
              +  +     + +   +T+     + N   V  N    P  P              + 
Sbjct: 59  QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118

Query: 243 PGRGPASGYQDPRCNLDGMRSPIPWLDG 270
           P  G  S              PI  L  
Sbjct: 119 PAYGQPSAAMGQNMRPMNQLYPIDLLTE 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	585
2yu6_A	141	YTH domain-containing protein 2; structural genomi	100.0
2yud_A	180	YTH domain-containing protein 1; structure genomic	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	94.79
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	91.52

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=4.4e-49  Score=362.77  Aligned_cols=126  Identities=29%  Similarity=0.538  Sum_probs=120.5

Q ss_pred             CCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCeeEEEEeeCCCCCCCC
Q 007902          452 EYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKN  531 (585)
Q Consensus       452 ~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~FqG~AeM~S~Vdf~k~  531 (585)
                      ...++|||||||+++||||+|++||||+||++||+||++||++++      +||||||||+||+|||||||++++|+ ..
T Consensus         4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~------~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~   76 (141)
T 2yu6_A            4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESS------IVYLVFSVQGSGHFQGFSRMSSEIGR-EK   76 (141)
T ss_dssp             CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSS------CEEEEEEESSSSEECEEEEECSCSSS-CC
T ss_pred             CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCC------cEEEEEEECCCCeEEEEEEEcccCCC-CC
Confidence            457899999999999999999999999999999999999999983      99999999999999999999999999 55


Q ss_pred             chhhhcccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecCC
Q 007902          532 VEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIKF  584 (585)
Q Consensus       532 ~~~Wqqdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~~  584 (585)
                      ..+|++++|+|.|+|+||+++||||+.++||+|++||||||+++||||||++.
T Consensus        77 ~~~W~~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~  129 (141)
T 2yu6_A           77 SQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ  129 (141)
T ss_dssp             CCCCSCSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTT
T ss_pred             CccccccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHH
Confidence            66799999999999999999999999999999999999999999999999974

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=4.3e-49  Score=375.66  Aligned_cols=139  Identities=32%  Similarity=0.541  Sum_probs=131.6

Q ss_pred             CCCCCcCCCCCCCCCCCCCceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCCCCe
Q 007902          437 LSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQF  516 (585)
Q Consensus       437 ~~~~~~qyN~~~f~~~~~~aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~Sg~F  516 (585)
                      ..+++++||+.++..  +++|||||||++++|||+||+||||+||++||+||++||++++      +||||||||+||+|
T Consensus         9 ~~~~~~~~~~~~~~~--~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~------~V~L~FSVn~Sg~F   80 (180)
T 2yud_A            9 RAVRKDQTSKLKYVL--QDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSAR------SVILIFSVRESGKF   80 (180)
T ss_dssp             CCCCCCSSHHHHHHT--TTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSS------CEEEEEEETTTSEE
T ss_pred             hhcchhhcccccccc--CceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCC------eEEEEEEeCCCCcE
Confidence            466789999988875  7999999999999999999999999999999999999999983      89999999999999


Q ss_pred             eEEEEeeCCCCCCCCchhhh------cccCCCcceeeEEEeecCCCCcccccccCCCCCCCcccCCCCceecC
Q 007902          517 VGLAEMAGPVDFNKNVEYWQ------QDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEVIK  583 (585)
Q Consensus       517 qG~AeM~S~Vdf~k~~~~Wq------qdkw~G~F~VeWi~vkdVPf~~l~HI~N~~NeNKPVt~SRDGQEIe~  583 (585)
                      ||||||+++++++....+|+      +++|+|.|+|+||+++||||..++||+|+|||||||+++||||||++
T Consensus        81 ~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~  153 (180)
T 2yud_A           81 QGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIEL  153 (180)
T ss_dssp             EEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECH
T ss_pred             EEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCH
Confidence            99999999999988888896      46799999999999999999999999999999999999999999986

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=94.79  E-value=0.044  Score=50.32  Aligned_cols=95  Identities=9%  Similarity=0.196  Sum_probs=62.9

Q ss_pred             eEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCC--------CCeeEEEEeeCCCCC
Q 007902          457 KFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDF  528 (585)
Q Consensus       457 RFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~S--------g~FqG~AeM~S~Vdf  528 (585)
                      +|.|+|| +.|++...++.|+|-. .+..+..-+   .-    .....+||++-+..        ..|.|++|+++..-.
T Consensus         2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr---~m----k~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~   72 (145)
T 2hd9_A            2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLS---RV----KPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYV   72 (145)
T ss_dssp             CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEE
T ss_pred             ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHH---hC----CCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcEe
Confidence            5899998 8999999999999977 544442222   11    23468888876665        899999999985432


Q ss_pred             CCCchhhhcccC-----CCcceeeEEEeecCCCCcccc
Q 007902          529 NKNVEYWQQDKW-----TGCFPVKWHIVKDVPNSLLKH  561 (585)
Q Consensus       529 ~k~~~~Wqqdkw-----~G~F~VeWi~vkdVPf~~l~H  561 (585)
                      +.+ .+|-..+|     -=...|+++.+..|++..+..
T Consensus        73 D~t-~~~~~~~~~~~~~p~rv~v~~v~~~~i~~~~l~~  109 (145)
T 2hd9_A           73 DFS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKPLIN  109 (145)
T ss_dssp             CCC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGGGGG
T ss_pred             CCC-ccCCCcccccCCeeEEEeCEEEeeccCcHHHHHh
Confidence            221 12222111     123568888888998876654

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=91.52  E-value=0.25  Score=45.34  Aligned_cols=95  Identities=12%  Similarity=0.087  Sum_probs=59.7

Q ss_pred             ceEEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEEC------CCCCeeEEEEeeCCCCCC
Q 007902          456 AKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVN------TSGQFVGLAEMAGPVDFN  529 (585)
Q Consensus       456 aRFFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN------~Sg~FqG~AeM~S~Vdf~  529 (585)
                      .+|.|+|+. ++++...++.|+|-. .+..+..-+   .-    .....+||+...      .-..|.|++|+++..-.+
T Consensus         4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~arn~lr---~M----k~GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D   74 (147)
T 2p5d_A            4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYKNTIN---KV----KVGDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD   74 (147)
T ss_dssp             CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGHHHHT---TC----CTTCEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC
T ss_pred             ccceeeecC-HHHHHHHHHcCeeec-CHHHHHHHH---hC----CCCCEEEEEEecccCCCCCCCEEEEEEEEecccccC
Confidence            479999986 677999999999966 443332222   11    234667777332      346899999999854222


Q ss_pred             -----CCchhhhc-ccCCCcceeeEEEe--ecCCCCccc
Q 007902          530 -----KNVEYWQQ-DKWTGCFPVKWHIV--KDVPNSLLK  560 (585)
Q Consensus       530 -----k~~~~Wqq-dkw~G~F~VeWi~v--kdVPf~~l~  560 (585)
                           ....+... .+| -..+|+|+..  ..||...|+
T Consensus        75 ~t~~dp~~~y~~~~~~w-~~VdV~~v~~~~~~v~L~~Lk  112 (147)
T 2p5d_A           75 SSKIFKPTPRNPNEKFP-YRVKLKEIKVFEPPINFKELI  112 (147)
T ss_dssp             CCCCSCCBTTBTTCCCC-EEEEEEEEEEEEEEEEHHHHG
T ss_pred             CcccCcCccCcCCCCCc-eEEEEEEEeecCCccCHHHHH
Confidence                 21111111 122 2678999987  888877666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	585
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	95.0

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.00  E-value=0.03  Score=49.27  Aligned_cols=91  Identities=8%  Similarity=0.180  Sum_probs=62.0

Q ss_pred             EEEEecCChhHHHHHhhcCeeecCCchhHHHHHHHHHHHhhcCCCCEEEEEEECCC--------CCeeEEEEeeCCCCCC
Q 007902          458 FFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTS--------GQFVGLAEMAGPVDFN  529 (585)
Q Consensus       458 FFVIKS~nedNIhkSIKygVWaTTp~nnkKLn~AF~ea~~k~~~~pV~LfFSVN~S--------g~FqG~AeM~S~Vdf~  529 (585)
                      |+|+=+ ++||+...++.|+|.......+.|++        -....-+||++....        ++|.|+++.++..-.+
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~r--------ikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d   73 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSR--------VKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD   73 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTT--------CCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhh--------CCCCCEEEEEeCccccCCCcccccEEEEEEEEeccceec
Confidence            555544 79999999999999997554433332        123578888875433        4799999999876443


Q ss_pred             CCchhhhcccCCC-----cceeeEEEeecCCCCc
Q 007902          530 KNVEYWQQDKWTG-----CFPVKWHIVKDVPNSL  558 (585)
Q Consensus       530 k~~~~Wqqdkw~G-----~F~VeWi~vkdVPf~~  558 (585)
                      .+ ..|...+..+     .++|+|+.+.+||++.
T Consensus        74 ~t-~i~~~~~~~~~~~P~R~~v~~~~~~ev~i~~  106 (145)
T d2hd9a1          74 FS-RIFKPHRGGKETYPYRVKIKPIKIGEINFKP  106 (145)
T ss_dssp             CC-CCSCCTTSSCCCCCEEEEEEEEEEEEEESGG
T ss_pred             cc-ccccccccCCceEEEEEEeEEeecccccHHH
Confidence            33 3465433322     3779999999999653