Citrus Sinensis ID: 007910
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M817 | 607 | Probable peptide transpor | yes | no | 0.950 | 0.915 | 0.522 | 1e-177 | |
| Q8LPL2 | 591 | Probable peptide/nitrate | no | no | 0.962 | 0.952 | 0.509 | 1e-173 | |
| Q8RX77 | 620 | Nitrate transporter 1.7 O | no | no | 0.962 | 0.908 | 0.385 | 1e-118 | |
| Q9SX20 | 596 | Probable nitrite transpor | no | no | 0.909 | 0.892 | 0.400 | 1e-107 | |
| Q9M9V7 | 587 | Probable peptide/nitrate | no | no | 0.912 | 0.909 | 0.368 | 1e-107 | |
| Q9LV10 | 616 | Probable peptide/nitrate | no | no | 0.960 | 0.912 | 0.349 | 1e-105 | |
| Q9LYD5 | 481 | Putative peptide/nitrate | no | no | 0.794 | 0.966 | 0.396 | 1e-103 | |
| Q944G5 | 636 | Probable peptide/nitrate | no | no | 0.935 | 0.860 | 0.362 | 1e-102 | |
| Q9LFX9 | 576 | Nitrate transporter 1.6 O | no | no | 0.945 | 0.960 | 0.357 | 1e-99 | |
| P46032 | 585 | Peptide transporter PTR2 | no | no | 0.887 | 0.887 | 0.367 | 1e-97 |
| >sp|Q9M817|PTR6_ARATH Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 295/565 (52%), Positives = 397/565 (70%), Gaps = 9/565 (1%)
Query: 2 ETNTNQEMT---KSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGAN 58
ET Q T K KGG+ TMPFIIANEAFEKVA GL NMI YLI +Y +G N
Sbjct: 7 ETEAKQIQTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTN 66
Query: 59 VLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118
VLF+W A SNF P++GA +SDS+LGRF I++ + ++ LGM+LLWLTA++P +P C+P
Sbjct: 67 VLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDP 126
Query: 119 FI--EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176
C ++ QL L+S+F L+SIG+GGIRPCSLAFGADQ N +NP NER+L++FF
Sbjct: 127 TAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFF 186
Query: 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKV 236
WYYAS ++ + + T IVYIQ+ GW +GFGVP LML + ++F+L S LY+ K
Sbjct: 187 GWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKS 246
Query: 237 LFTGFGQVISAAWKNRHLPLPPTDA--DRWYYYKGSKLTAPTEKLRFLNRACVVQNREKE 294
LFTG Q I AA+K R L LP D +Y+ K S++ AP++KLRFLN+AC++ NRE+E
Sbjct: 247 LFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEE 306
Query: 295 LDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHI- 353
+ DG A+ PW+LCT +VEELKA+IKV+PIWS+GIM+++ SQ +F LQA SMDR +
Sbjct: 307 IGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLS 366
Query: 354 -FSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISC 412
++P GSFG+F I+ L +WV +YDR V+PL SK RP LS + R+G+GL +S
Sbjct: 367 RHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSF 426
Query: 413 VAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYY 472
+AMA++A+VE RR AI +G A+N VV ++AMWLVPQ L GLAEA AIGQ EF+Y
Sbjct: 427 LAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFY 486
Query: 473 SQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYW 532
++FPK+MSSI +L LGMAV +L+ S+++ +N +T GK SWVS N+N+ HY+YYYW
Sbjct: 487 TEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYW 546
Query: 533 ILCILSVVNFFYFIACSWAYGSCED 557
+L I+S +N Y++ CSW+YG D
Sbjct: 547 VLAIMSFINVIYYVICSWSYGPLVD 571
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis thaliana GN=At3g16180 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 610 bits (1572), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/573 (50%), Positives = 400/573 (69%), Gaps = 10/573 (1%)
Query: 6 NQEMTKSK-KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWG 64
Q +T+ + KGGL TMPFIIANE FEKVA GL NMI YL+ +Y + +G VLF+W
Sbjct: 15 QQPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWV 74
Query: 65 AISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEI-C 123
A +NF+P++GA +SDS+LGRF I + + ++LLGM++LWLTA++P +P C C
Sbjct: 75 AATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNC 134
Query: 124 PAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASV 183
+A QL L+++F L+SIG+GGIRPCSLAFGADQ N +NP NER+L++FF WYYAS
Sbjct: 135 SSATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASS 194
Query: 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQ 243
++ + + T+IVYIQD GW +GFG+P LML + +F+ S LY+K +K LFTG Q
Sbjct: 195 SVAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQ 254
Query: 244 VISAAWKNRHLPLPPTDADRWYYY--KGSKLTAPTEKLRFLNRACVVQNREKELDLDGKA 301
V++AA+ R+L LP R YY K S+L AP++KLRFLN+AC + NR+++L DG A
Sbjct: 255 VVAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDGLA 314
Query: 302 IEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEK-LKI 360
+ W+LCT QVE+LKA++KV+P+WS+GIM+++ +SQ +F LQAKSMDR + S +I
Sbjct: 315 LNQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQI 374
Query: 361 PPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAAL 420
P GSFG+F I+ L WV +YDR ++PL SK RP ++ + R+G+GL IS +AMAV+A
Sbjct: 375 PAGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSAT 434
Query: 421 VERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMS 480
VE RR AI +GLA++ V+++AMWLVPQ L GLAEA IGQ EF+Y++FPK+MS
Sbjct: 435 VEHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMS 494
Query: 481 SIGVALLSLGMAVGNLVGSLIVTILNRVTGSG--GKVSWVSTNVNRAHYDYYYWILCILS 538
SI +L LGMAV N++ S+ ILN V S G VSW+ N+N+ HYDYYYW+L ILS
Sbjct: 495 SIAASLFGLGMAVANILASV---ILNAVKNSSKQGNVSWIEDNINKGHYDYYYWVLAILS 551
Query: 539 VVNFFYFIACSWAYGSCEDIKVWDEGEAMKEHE 571
VN Y++ CSW+YG D D+ M++ E
Sbjct: 552 FVNVIYYVVCSWSYGPTVDQVRNDKVNGMRKEE 584
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX77|PTR21_ARATH Nitrate transporter 1.7 OS=Arabidopsis thaliana GN=NRT1.7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 225/584 (38%), Positives = 342/584 (58%), Gaps = 21/584 (3%)
Query: 6 NQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGA 65
+ E + K GG R + FI+ NE E++ +GL AN + YL +H+ + ANV+ +W
Sbjct: 44 DAEKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSG 103
Query: 66 ISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEI-CP 124
+N P++GA ISD+++GRF+ IA +F LLG+I + LTA P P CN + C
Sbjct: 104 FTNLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCG 163
Query: 125 AAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERI--LQTFFNWYYAS 182
Q+G L +S+G+GGIRPCS+ FG DQF D E + + +FFNWYY +
Sbjct: 164 GPNKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQF---DQRTEEGVKGVASFFNWYYMT 220
Query: 183 VGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFG 242
+ + + T++VYIQD+ W++GF +P GLM + VMF G Y+ K +F+G
Sbjct: 221 FTVVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIA 280
Query: 243 QVISAAWKNRHLPLPPTDADRWYYY----KGSKLTA--PTEKLRFLNRACVVQNREKELD 296
QVI AA K R L LP D YY K S L+ + + R L++A VV E +L
Sbjct: 281 QVIVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLT 338
Query: 297 LDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIM-IAVTISQYTFPQLQAKSMDRHIFS 355
+G + W+LC+V++VEE+K +I+++PIWS+GI+ +A +Q TF QA MDR++
Sbjct: 339 PEGPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNL-G 397
Query: 356 EKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAM 415
K +IP GS V ++LT+ I++ YDRV VP + + T G++ QRIG G+ + +M
Sbjct: 398 PKFEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSM 457
Query: 416 AVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF 475
VA +VER RR +I G +P G+ ++ WL PQ L+GL EAFN IGQIEF+ SQF
Sbjct: 458 IVAGIVERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQF 514
Query: 476 PKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILC 535
P+ M SI +L SL A + + S +VT++++ +G + W++ N+N DY+Y+++
Sbjct: 515 PEHMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIA 574
Query: 536 ILSVVNFFYFIACS--WAYGSCEDIKVWDEGEAMKEHEMPPTKE 577
+L VVN YF C+ + Y I+ ++E ++ + EM K
Sbjct: 575 VLGVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSKKS 618
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Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in phloem loading and nitrate remobilization from the older leaves to other tissues. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX20|PTR18_ARATH Probable nitrite transporter At1g68570 OS=Arabidopsis thaliana GN=At1g68570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust.
Identities = 220/549 (40%), Positives = 325/549 (59%), Gaps = 17/549 (3%)
Query: 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPII 73
KGGL TMPFI ANE EK+A VG HANMI YL + H+ + AN L + S+ P++
Sbjct: 24 KGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLL 83
Query: 74 GASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGF 133
GA I+DSF GRF I + +GM LL ++AIIP RPP C E+C A QL
Sbjct: 84 GAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKG-EEVCVVADTAQLSI 142
Query: 134 LFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITL 193
L+ + +L ++G+GGIRPC +AFGADQF D PN +FNWYY +G + + ++T+
Sbjct: 143 LYVALLLGALGSGGIRPCVVAFGADQFDESD-PNQTTKTWNYFNWYYFCMGAAVLLAVTV 201
Query: 194 IVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRH 253
+V+IQD GW +G G+P M S + F+ G LY FT QV AA++ R
Sbjct: 202 LVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSPFTRLIQVGVAAFRKRK 261
Query: 254 LPLPPTDADRWYYYK--------GSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPW 305
L + +D Y+ G KLT T+ + FL++A +V E++ G+ W
Sbjct: 262 LRMV-SDPSLLYFNDEIDAPISLGGKLTH-TKHMSFLDKAAIVT--EEDNLKPGQIPNHW 317
Query: 306 KLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQY-TFPQLQAKSMDRHIFSEKLKIPPGS 364
+L TV +VEELK++I++ PI +SGI++ +Q TF QAK+M+RH+ + +IP GS
Sbjct: 318 RLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHL-TNSFQIPAGS 376
Query: 365 FGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERK 424
VF + + + YDRV V + KFT RG+++ R+GIG IS +A VA VE K
Sbjct: 377 MSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVEVK 436
Query: 425 RRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGV 484
R+S AI GL D P +V ++ +WL+PQ L G+AEAF +IG +EF+Y Q P++M S
Sbjct: 437 RKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRSTAT 496
Query: 485 ALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWV-STNVNRAHYDYYYWILCILSVVNFF 543
AL + +++GN V +L+VT++++ + +W+ N+NR +Y+YW++ +L VN
Sbjct: 497 ALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVNLV 556
Query: 544 YFIACSWAY 552
Y++ C+ Y
Sbjct: 557 YYLWCAKIY 565
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May act as an efflux-type nitrite transporter. Not regulated by the PII protein involved in the regulation of nitrite uptake into higher plant chloroplasts. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9V7|PTR8_ARATH Probable peptide/nitrate transporter At1g18880 OS=Arabidopsis thaliana GN=At1g18880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/545 (36%), Positives = 323/545 (59%), Gaps = 11/545 (2%)
Query: 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGA 75
G + MPFII NE FEK+ VG +N++ YL ++M A V+ ++G SNF I+ A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 76 SISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI-EICPAAKPRQLGFL 134
+ DS+ GR++ ++ LG + + LTA+I P +C I +C Q+ FL
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 135 FSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194
+ VL+ IGAGGIRPC+L FGADQF +P +R +++FFNWY+ + + M S+TLI
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQF-DPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLI 200
Query: 195 VYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHL 254
VY+Q W +G +P LML ++F GS LY+K KA+ +VI A K R L
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 255 -PLPPTDADRWYY--YKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVK 311
P+ P + + +K SKL TE+ RFL+++ + Q ++ +L+ DG ++ WKLC+++
Sbjct: 261 KPVGPNELYNYIASDFKNSKL-GHTEQFRFLDKSAI-QTQDDKLNKDGSPVDAWKLCSMQ 318
Query: 312 QVEELKAIIKVLPIW-SSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAI 370
QVEE+K +I+VLP+W S+ + I Q T+ Q+ DR + +IP GS+ VF +
Sbjct: 319 QVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLM 378
Query: 371 LTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAI 430
L +TI++ IYDRV+VP L K+T R G++ QR+G GL + +M V+A+VE+ RR A+
Sbjct: 379 LGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVAL 438
Query: 431 RE---GLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL 487
+ GLA + +++ MWL+PQ L+G+A+A +GQ+EFYY QFP+ M S +L
Sbjct: 439 TKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLY 498
Query: 488 SLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIA 547
G+ + + + + +++ ++ T SW+ ++N+ +Y+Y+++ + +N YF+
Sbjct: 499 YCGIGLASYLSTFLLSAVHDTTEGFSGGSWLPEDLNKGRLEYFYFLVAGMMTLNLAYFLL 558
Query: 548 CSWAY 552
S Y
Sbjct: 559 VSHWY 563
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LV10|PTR53_ARATH Probable peptide/nitrate transporter At5g62680 OS=Arabidopsis thaliana GN=At5g62680 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/578 (34%), Positives = 332/578 (57%), Gaps = 16/578 (2%)
Query: 7 QEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAI 66
Q K G + MPFII NE FEK+ +G +N++ YL +++ A ++ +
Sbjct: 37 QNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGT 96
Query: 67 SNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIE-ICPA 125
NF + A + D++ GR++ +++ LG ++ LTA +P P C + IC
Sbjct: 97 INFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNG 156
Query: 126 AKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185
Q+ FL + +GAGGIRPC+LAFGADQF NP + + +R + +FFNWY+ +
Sbjct: 157 PSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQF-NPKSESGKRGIDSFFNWYFFTFTF 215
Query: 186 SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVI 245
+ + S+TL+VY+Q W +G +P LM + ++F G LY+K KA+ G QVI
Sbjct: 216 AQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVI 275
Query: 246 SAAWKNRHLP---LPPTDADRWY--YYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGK 300
+ A K R L P + +Y Y SKL T++ RFL++A ++ +K L DGK
Sbjct: 276 AVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKY-TDQFRFLDKAAILTPEDK-LQPDGK 333
Query: 301 AIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLK 359
+PWKLCT++QVEE+K I++VLPIW + + +TI+Q T+P QA DR + S
Sbjct: 334 PADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFV 393
Query: 360 IPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAA 419
IP ++ VF + +T+++ +YDRV+VP + + T G++ QRIG G+ + ++ VA
Sbjct: 394 IPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAG 453
Query: 420 LVERKRRSAAIRE---GLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFP 476
VE +RR+ A+ + G+A + +++AMWL+PQ L G+AEAF AIGQ+EFYY QFP
Sbjct: 454 FVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFP 513
Query: 477 KTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCI 536
+ M S ++ +G V + +GS ++ ++R T + +W++ ++N+ D +Y+++
Sbjct: 514 ENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAG 573
Query: 537 LSVVNFFYFIACSWAY---GSCEDIKVWDEGEAMKEHE 571
+ VNF YF+ S Y GS +++ ++ E + + +
Sbjct: 574 ILAVNFAYFLVMSRWYRYKGSDDEVTTYETNENIIKQQ 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYD5|PTR48_ARATH Putative peptide/nitrate transporter At5g11570 OS=Arabidopsis thaliana GN=At5g11570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (965), Expect = e-103, Method: Compositional matrix adjust.
Identities = 216/545 (39%), Positives = 299/545 (54%), Gaps = 80/545 (14%)
Query: 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPII 73
K G+ T+PFI+A++A EK+A GL NMI +L +EY M E AN+LFLW A +NF P++
Sbjct: 14 KRGIPTIPFILASQALEKLAYFGLVPNMILFLTVEYGMGTAEAANILFLWSAATNFFPLV 73
Query: 74 GASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGF 133
GA I+DS+ GRF +I G+ +L GM+LLWLT II P+C+ +C +
Sbjct: 74 GAFIADSYTGRFPLIGFGSSISLTGMVLLWLTTIIR----PECDKLTNVCQPTTLLKSVL 129
Query: 134 LFSSFVLMSIGAGGIRPCSLAFGADQFH-NPDNPNNERILQTFFNWYYASVGLSYMASIT 192
L+S F L +IGAGG+R LAF ADQ N + L+T FNWYY SV ++ S +
Sbjct: 130 LYSFFALTAIGAGGVRSSCLAFAADQLQPNQTSRVTTSSLETLFNWYYFSVMVACFLSQS 189
Query: 193 LIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNR 252
L+V++Q GW +GFGV V M S +F S
Sbjct: 190 LLVFVQTTYGWQIGFGVSVAAMALSVALFFAASP-------------------------- 223
Query: 253 HLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQ 312
YY + K PT R PWKLC V+Q
Sbjct: 224 ------------YYVRFQK---PTRNSR----------------------NPWKLCRVQQ 246
Query: 313 VEELKAIIKVLPIWSSGIMIA-VTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAIL 371
VE+LK++I V+PIWS+GI+++ VT Q +F LQAK+MDRH F + +IPPGS+G+F ++
Sbjct: 247 VEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFIQGFEIPPGSYGIFLVI 306
Query: 372 TLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIR 431
+ +++ +YD V+VPLLS P L R+ G IS + ++ A E RR A
Sbjct: 307 SFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCISALAATEYARRKTA-- 364
Query: 432 EGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGM 491
E L+AMWL+P L G+AEA N I Q EF+YS+ PKTMSS+ L SL M
Sbjct: 365 -----RDESGTKLSAMWLLPYMILGGIAEALNTIAQNEFFYSELPKTMSSVATTLSSLNM 419
Query: 492 AVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWA 551
A +L+ S I+TI++ VT G SW++ N++ H DYYYW+L LS++N YF+ C +
Sbjct: 420 AAASLISSWIITIVD-VTTYG---SWITENIDEGHLDYYYWLLVGLSLLNVLYFVWCKKS 475
Query: 552 YGSCE 556
YG C
Sbjct: 476 YGKCS 480
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q944G5|PTR44_ARATH Probable peptide/nitrate transporter At3g47960 OS=Arabidopsis thaliana GN=At3g47960 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 371 bits (953), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/566 (36%), Positives = 330/566 (58%), Gaps = 19/566 (3%)
Query: 6 NQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGA 65
+E K G + MPFII NE FEK+ +G +N++ YL +++ A ++ +
Sbjct: 54 EEEQRKIVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTSVFNLKSYTAATIINAFSG 113
Query: 66 ISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPA 125
NF I A + D++ GR++ +++ LG ++ LTA IP+ P C I C
Sbjct: 114 TINFGTFIAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAIPSLHPVACGNKIS-CEG 172
Query: 126 AKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185
Q+ FL + +GAGGIRPC+LAFGADQF NP + + ++ + +FFNWY+ +
Sbjct: 173 PSVGQILFLLMGLGFLVVGAGGIRPCNLAFGADQF-NPKSESGKKGINSFFNWYFFTFTF 231
Query: 186 SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVI 245
+ + S+T +VYIQ W +G +PV LM + V+F G LY+K KA+ G +VI
Sbjct: 232 AQIISLTAVVYIQSNVSWTIGLIIPVALMFLACVIFFAGDRLYVKVKASGSPLAGIARVI 291
Query: 246 SAAWKNRHL-PLPPTDADRWYY----YKGSKLTAPTEKLRFLNRACVVQNREKELDLDGK 300
+AA K R L P+ + + + Y + L T++ RFL++A ++ EK L+ DG
Sbjct: 292 AAAIKKRGLKPVKQPWVNLYNHIPSNYANTTLKY-TDQFRFLDKAAIMTPEEK-LNSDGT 349
Query: 301 AIEPWKLCTVKQVEELKAIIKVLPIW--SSGIMIAVTISQYTFPQLQAKSMDRHIFSEKL 358
A +PWKLCT++QVEE+K I++V+PIW S+ +A+TI Q T+P QA DR + S
Sbjct: 350 ASDPWKLCTLQQVEEVKCIVRVIPIWFASTIYYLAITI-QMTYPVFQALQSDRRLGSGGF 408
Query: 359 KIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVA 418
+IP ++ VF + +T+++ YDRV+VP L + T G+S QRIG G + +++ V+
Sbjct: 409 RIPAATYVVFLMTGMTVFIIFYDRVLVPSLRRVTGLETGISLLQRIGAGFTFAIMSLLVS 468
Query: 419 ALVERKRRSAAIRE---GLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF 475
+E +RR+ A+ + G+A + +++A+WL+PQ L G+AEAF AIGQ+EFYY QF
Sbjct: 469 GFIEERRRNFALTKPTLGMAPRTGEISSMSALWLIPQLTLAGIAEAFAAIGQMEFYYKQF 528
Query: 476 PKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILC 535
P+ M S ++ +G V + + S +++ ++R T +W++ ++N+A DY+Y++L
Sbjct: 529 PENMKSFAGSIFYVGAGVSSYLASFLISTVHRTTAHSPSGNWLAEDLNKAKLDYFYFMLT 588
Query: 536 ILSVVNFFYFIACSWAY----GSCED 557
L VVN YF+ + Y G+ ED
Sbjct: 589 GLMVVNMAYFLLMARWYRYKGGNDED 614
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFX9|PTR13_ARATH Nitrate transporter 1.6 OS=Arabidopsis thaliana GN=NRT1.6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 363 bits (933), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 210/588 (35%), Positives = 338/588 (57%), Gaps = 35/588 (5%)
Query: 6 NQEMTKSKK-GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWG 64
N+++ KK GG R + FI+ NE EK+ +G+ AN + YL +HM E NV +LW
Sbjct: 6 NRKILPEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWM 65
Query: 65 AISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPA-ARPPKCNPFIEIC 123
++NF P++GA ISD+++GRF+ IA + ++LG++ + LTA +P PP NP + C
Sbjct: 66 GLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDEC 125
Query: 124 PAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASV 183
QLG LF +SIG+GGIRPCS+ FG DQF + + + +FFNWYY ++
Sbjct: 126 DDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQF-DQRTEQGLKGVASFFNWYYLTL 184
Query: 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQ 243
+ + S T++VY+Q WV+GF +P LM + V+F +G Y+ K +F+G +
Sbjct: 185 TMVLIFSHTVVVYLQ-TVSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIAR 243
Query: 244 VISAAWKNRHLPLPPTDADRWYYYKG-------SKLTAPTEKLRFLNRACVVQNREKELD 296
VI AA K R L + D YY+ SKL T++ +FL++A V+ + +L
Sbjct: 244 VIVAARKKRDLKISLVDDGTEEYYEPPVKPGVLSKLPL-TDQFKFLDKAAVI--LDGDLT 300
Query: 297 LDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIM-IAVTISQYTFPQLQAKSMDRHIFS 355
+G W+LC++++VEE+K +I+V+P+WS+GI+ I +Q TF QA MDRH+
Sbjct: 301 SEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHM-G 359
Query: 356 EKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAM 415
+IP S V + +T+ IWV IY+ ++VP L + R ++ QR+GIG+ + ++M
Sbjct: 360 PHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIVFAILSM 417
Query: 416 AVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF 475
A VE RR+ A + ++ WL L+GL E+FN IG IEF+ SQF
Sbjct: 418 FTAGFVEGVRRTRATE---------MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQF 468
Query: 476 PKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILC 535
P+ M SI +L L A N + SL+VT +++V+G+ W++ +++R DY+Y+++
Sbjct: 469 PEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIA 528
Query: 536 ILSVVNFFYFIACS--WAYGSCEDIKVWDEGEAM------KEHEMPPT 575
+L VVN YF C+ + Y + I+ ++E +++ + H+ P+
Sbjct: 529 VLGVVNLVYFWYCAHRYQYKAGSQIEDFNEEKSLLDIEPNQRHDQSPS 576
|
Low-affinity proton-dependent nitrate transporter. Not involved in dipeptides transport. Involved in delivering nitrate for seed development. Arabidopsis thaliana (taxid: 3702) |
| >sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 199/541 (36%), Positives = 306/541 (56%), Gaps = 22/541 (4%)
Query: 11 KSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFL 70
K K G + PFI+ NE E++A G+ N+I YL + H A + W
Sbjct: 39 KEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLT 98
Query: 71 PIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQ 130
P+IGA ++D++ GR+ IA + +GM L L+A +PA +P +C + CP+A P Q
Sbjct: 99 PLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC--IGDFCPSATPAQ 156
Query: 131 LGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ-TFFNWYYASVGLSYMA 189
F L+++G GGI+PC +FGADQF + D+ ER+ + +FFNW+Y S+ + +
Sbjct: 157 YAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDS--RERVRKASFFNWFYFSINIGALV 214
Query: 190 SITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAW 249
S +L+V+IQ+ GW +GFG+P M + F G+ LY K T QV+ A++
Sbjct: 215 SSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPITRISQVVVASF 274
Query: 250 KNRHLPLPPTDADRWYYYK-------GSKLTAPTEKLRFLNRACVVQNREKELDLDGKAI 302
+ + +P DA Y + GS+ T+ ++L++A V+ E + G
Sbjct: 275 RKSSVKVPE-DATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEESK---SGDYS 330
Query: 303 EPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYT--FPQLQAKSMDRHIFSEKLKI 360
W+LCTV QVEELK +I++ PIW+SGI+ + +Q + F Q Q ++M+ I S ++
Sbjct: 331 NSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQ-QGRAMNCKIGS--FQL 387
Query: 361 PPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAAL 420
PP + G F ++ IWV +YDR +VPL KFT +G + QR+GIGL +S + MA AA+
Sbjct: 388 PPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAI 447
Query: 421 VERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMS 480
VE R A GL ++ V ++ +W +PQ ++G AE F IGQ+EF+Y Q P M
Sbjct: 448 VEIIRLHMANDLGLVESG-APVPISVLWQIPQYFILGAAEVFYFIGQLEFFYDQSPDAMR 506
Query: 481 SIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVV 540
S+ AL L A+GN + SLI+T++ T G+ W+S N+N H DY++W+L LS+V
Sbjct: 507 SLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLV 566
Query: 541 N 541
N
Sbjct: 567 N 567
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| 255546425 | 595 | nitrate transporter, putative [Ricinus c | 0.953 | 0.937 | 0.669 | 0.0 | |
| 224121814 | 567 | predicted protein [Populus trichocarpa] | 0.941 | 0.971 | 0.665 | 0.0 | |
| 449467453 | 582 | PREDICTED: probable peptide transporter | 0.967 | 0.972 | 0.596 | 0.0 | |
| 449529325 | 582 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.967 | 0.972 | 0.596 | 0.0 | |
| 225442569 | 584 | PREDICTED: probable peptide transporter | 0.988 | 0.989 | 0.563 | 0.0 | |
| 297743243 | 622 | unnamed protein product [Vitis vinifera] | 0.976 | 0.918 | 0.568 | 0.0 | |
| 356511367 | 573 | PREDICTED: probable peptide transporter | 0.947 | 0.966 | 0.605 | 0.0 | |
| 356523840 | 573 | PREDICTED: probable peptide transporter | 0.947 | 0.966 | 0.577 | 0.0 | |
| 255549914 | 612 | nitrate transporter, putative [Ricinus c | 0.977 | 0.934 | 0.531 | 0.0 | |
| 359476042 | 583 | PREDICTED: probable peptide transporter | 0.962 | 0.965 | 0.542 | 0.0 |
| >gi|255546425|ref|XP_002514272.1| nitrate transporter, putative [Ricinus communis] gi|223546728|gb|EEF48226.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/565 (66%), Positives = 455/565 (80%), Gaps = 7/565 (1%)
Query: 2 ETNTNQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLF 61
+T +E+ K +KGGLRTMPFIIANEAFEKVAGVGLHANMI YL EY++S GA +LF
Sbjct: 7 DTKKTREI-KRQKGGLRTMPFIIANEAFEKVAGVGLHANMIVYLQNEYNLSSATGATILF 65
Query: 62 LWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF-- 119
LW AIS F PI+GA +SDS+LGRF VI LGT ++LG+ILLWLTAIIP+ARPP C+
Sbjct: 66 LWLAISYFTPILGAFVSDSYLGRFLVIVLGTLISILGIILLWLTAIIPSARPPHCDQIDG 125
Query: 120 -IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178
++ C + QL FL S+F LM+IGAGGIRPCSLAFGADQF NP+NP NE+ LQ+FFNW
Sbjct: 126 NLQGCASPNAAQLLFLLSAFALMAIGAGGIRPCSLAFGADQFDNPNNPRNEKTLQSFFNW 185
Query: 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLF 238
YYASVG+S M S+ IV IQD AGWV+GFGVPVG ML S MFL+GSS YIK KA+K L
Sbjct: 186 YYASVGISVMVSVIFIVAIQDAAGWVIGFGVPVGFMLLSITMFLMGSSRYIKLKADKSLL 245
Query: 239 TGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLD 298
+GF QVI+A WK ++L L P D+D+WYY+KGSK PTEKL FLN+ACV++N +KELD D
Sbjct: 246 SGFAQVIAATWKKKNLSLAPYDSDKWYYHKGSKFIVPTEKLSFLNKACVIRNPDKELDSD 305
Query: 299 GKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKL 358
G A++PW LCTVKQVEELKA++KVLPIWS+GIMI+VT+SQ FP LQA++MDR F K
Sbjct: 306 GLAVDPWNLCTVKQVEELKALMKVLPIWSTGIMISVTLSQQAFPVLQAETMDRR-FIGKA 364
Query: 359 KIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVA 418
KIP GSFGVF ILTLTIWVAIYD+V+VP ++K T RPRGL+ +QR+G+GLA+SC+A A+A
Sbjct: 365 KIPAGSFGVFTILTLTIWVAIYDQVLVPRIAKITKRPRGLTNKQRMGMGLALSCLATAMA 424
Query: 419 ALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKT 478
VE +RR+ A+ EGLAD P+G V ++AMWLVPQ+CL GLAEA NAIGQIEFYYSQFPKT
Sbjct: 425 GAVEHQRRATALNEGLADKPKGQVNMSAMWLVPQHCLTGLAEALNAIGQIEFYYSQFPKT 484
Query: 479 MSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGG-KVSWVSTNVNRAHYDYYYWILCIL 537
M+SIGVAL SLGMA GNLVGSLIV +L+ T + KVSWVS N+N+ HYDYYYW+L L
Sbjct: 485 MTSIGVALFSLGMAFGNLVGSLIVGVLSHATSNNDEKVSWVSNNLNKGHYDYYYWLLSGL 544
Query: 538 SVVNFFYFIACSWAYGSCEDIKVWD 562
SVVN FY++ CS AYGS ED ++ D
Sbjct: 545 SVVNLFYYLICSRAYGS-EDRRISD 568
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121814|ref|XP_002318679.1| predicted protein [Populus trichocarpa] gi|222859352|gb|EEE96899.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/556 (66%), Positives = 449/556 (80%), Gaps = 5/556 (0%)
Query: 1 METNTNQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVL 60
+ NT + +T +KKGGLRTMPFIIANE FEKVAGVGL ANMI YL EY++S GA +L
Sbjct: 14 INQNTTRTVT-AKKGGLRTMPFIIANETFEKVAGVGLQANMILYLRNEYNLSNASGAYIL 72
Query: 61 FLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKC---N 117
LWGAIS F+PI+GA ISDS+LGRF VIA GT +LLGMI+LWLTA+IP ARPP C +
Sbjct: 73 SLWGAISYFMPILGAFISDSYLGRFSVIAYGTVISLLGMIVLWLTALIPHARPPHCAQTD 132
Query: 118 PFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177
++ C + K Q LFSSF L++IGAGGIRPCSLAFGA+Q NP NP N+R LQTFFN
Sbjct: 133 DDLKDCVSPKLGQFLLLFSSFALLAIGAGGIRPCSLAFGANQIDNPTNPKNQRTLQTFFN 192
Query: 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVL 237
WYYASVG+S M S+ +IV IQD AGWVVGFGV VG ML ST+ F LGSSLY+K KANK L
Sbjct: 193 WYYASVGISIMISVLVIVAIQDAAGWVVGFGVAVGFMLLSTIFFFLGSSLYVKVKANKSL 252
Query: 238 FTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDL 297
GF QV AAWK ++L LPP + WY++KGSKL APTEKLRFLN+ACV+ N EK+LD
Sbjct: 253 VAGFAQVTVAAWKKKNLALPPMEYAAWYHHKGSKLVAPTEKLRFLNKACVIGNPEKDLDC 312
Query: 298 DGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEK 357
DG AI+PW+LCTVKQVEELK++IKVLPI S+GIMIAVT++Q+ FP LQA +MDRH +
Sbjct: 313 DGLAIDPWRLCTVKQVEELKSLIKVLPICSTGIMIAVTLNQHAFPVLQATTMDRHFIGNQ 372
Query: 358 LKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAV 417
K+P GS+GVF IL LTIWVA+YDR++VPLL+KFTNRP+GLS +QR+GIG+ ISC+A A
Sbjct: 373 -KLPAGSYGVFTILALTIWVAVYDRLLVPLLAKFTNRPQGLSNKQRMGIGIVISCIATAT 431
Query: 418 AALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPK 477
A VE KRR+ A+R+GLAD+P VV ++A WL+PQ CL+GL EAF+A+GQI+F+YSQFPK
Sbjct: 432 AGAVENKRRATALRQGLADHPRDVVDMSANWLIPQYCLVGLGEAFSAVGQIDFFYSQFPK 491
Query: 478 TMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCIL 537
TM+SI VAL SLGMAVGNLV SLI+ I++ VT GGKVSWVS N+N+ HYDYYYW+L +L
Sbjct: 492 TMTSIAVALFSLGMAVGNLVASLIIGIVDDVTRRGGKVSWVSDNLNKGHYDYYYWLLSLL 551
Query: 538 SVVNFFYFIACSWAYG 553
S+VNFFY++ CSWA+G
Sbjct: 552 SLVNFFYYLLCSWAFG 567
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467453|ref|XP_004151437.1| PREDICTED: probable peptide transporter At1g52190-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/577 (59%), Positives = 442/577 (76%), Gaps = 11/577 (1%)
Query: 1 METNTNQEM-----TKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPE 55
ME +++M + KKGGLRTMPFIIANE FEK++ VGLHANMIFYL+ EYH+ +
Sbjct: 1 MENQNSEKMETTQKVERKKGGLRTMPFIIANEIFEKISNVGLHANMIFYLMNEYHLDSAK 60
Query: 56 GANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPK 115
GA VLFLW A++N LPI GA +SDS+LGRF+VIA+GT L+GM++LWLTAI P ARPP
Sbjct: 61 GAIVLFLWSALTNLLPIGGAFLSDSYLGRFKVIAMGTVVTLVGMVVLWLTAIFPKARPPH 120
Query: 116 CNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175
C P E C +A QL L+ +F+LM+ GAGGIRPCSLAFGADQ NP NP N+R +Q+F
Sbjct: 121 CTPAGEFCVSANTAQLMLLYFAFLLMAAGAGGIRPCSLAFGADQLENPGNPRNQRTMQSF 180
Query: 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANK 235
FNWYYASVG+S S+ +VY+Q+ GWVVGFGVPVGLMLFST MF LGSSLY+K ANK
Sbjct: 181 FNWYYASVGISVTISVVFMVYLQNATGWVVGFGVPVGLMLFSTAMFFLGSSLYVKLMANK 240
Query: 236 VLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKEL 295
L + QVI AAW+NRHL PP +D+W+Y+KGSKL PT KLRFLN+AC+++N E +L
Sbjct: 241 SLLSSLTQVIVAAWRNRHLEFPPQASDKWFYHKGSKLVTPTPKLRFLNKACIIRNIETDL 300
Query: 296 DLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFS 355
D +G A PW+L T+++VEELKA+I+VLPIWS+GI+I+ TI+Q+TF LQA +MDRHI +
Sbjct: 301 DSNGMAKFPWRLSTIQRVEELKAVIRVLPIWSTGIVISATINQFTFYSLQASTMDRHI-T 359
Query: 356 EKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAM 415
+ P SF VF ILTLTIWVAIYD+++VPLL+KFT + GL+ +QR+GIGL ISC+A
Sbjct: 360 PHFQFPAASFAVFTILTLTIWVAIYDQIIVPLLAKFTKKSNGLTLKQRMGIGLVISCLAS 419
Query: 416 AVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF 475
V+A +ERKRR+ AI EGLA+ P G+V L+AMWLVPQ+CL GLAEA NAIGQI+F+YSQ
Sbjct: 420 IVSAEIERKRRNRAIHEGLANVPGGIVQLSAMWLVPQHCLAGLAEALNAIGQIQFFYSQL 479
Query: 476 PKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILC 535
P++M+SI VAL SLGM G+LV +L V+++ + T GK W+S N+N+ HYDYYYW+L
Sbjct: 480 PRSMASIAVALFSLGMGGGSLVAALTVSVVKKRTKKNGK-GWLSNNLNQGHYDYYYWVLS 538
Query: 536 ILSVVNFFYFIACSWAYGS----CEDIKVWDEGEAMK 568
++ V N Y++ CSW YG E ++WD+ EA++
Sbjct: 539 LMGVANLLYYLICSWFYGDEKEGMEQSRIWDDKEAIE 575
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529325|ref|XP_004171650.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide transporter At1g52190-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/577 (59%), Positives = 441/577 (76%), Gaps = 11/577 (1%)
Query: 1 METNTNQEM-----TKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPE 55
ME +++M + KKGGLRTMPFIIANE FEK++ VGLHANMIFYL+ EYH+ +
Sbjct: 1 MENQNSEKMETTQKVERKKGGLRTMPFIIANEIFEKISNVGLHANMIFYLMNEYHLDSAK 60
Query: 56 GANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPK 115
GA VLFLW A++N LPI GA +SDS+LGRF+VIA+GT L+GM+ LWLTAI P ARPP
Sbjct: 61 GAIVLFLWSALTNLLPIGGAFLSDSYLGRFKVIAMGTVVTLVGMVXLWLTAIFPKARPPH 120
Query: 116 CNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175
C P E C +A QL L+ +F+LM+ GAGGIRPCSLAFGADQ NP NP N+R +Q+F
Sbjct: 121 CTPAGEFCVSANTAQLMLLYFAFLLMAAGAGGIRPCSLAFGADQLENPGNPRNQRTMQSF 180
Query: 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANK 235
FNWYYASVG+S S+ +VY+Q+ GWVVGFGVPVGLMLFST MF LGSSLY+K ANK
Sbjct: 181 FNWYYASVGISVTISVVFMVYLQNATGWVVGFGVPVGLMLFSTAMFFLGSSLYVKLMANK 240
Query: 236 VLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKEL 295
L + QVI AAW+NRHL PP +D+W+Y+KGSKL PT KLRFLN+AC+++N E +L
Sbjct: 241 SLLSSLTQVIVAAWRNRHLEFPPQASDKWFYHKGSKLVTPTPKLRFLNKACIIRNIETDL 300
Query: 296 DLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFS 355
D +G A PW+L T+++VEELKA+I+VLPIWS+GI+I+ TI+Q+TF LQA +MDRHI +
Sbjct: 301 DSNGMAKFPWRLSTIQRVEELKAVIRVLPIWSTGIVISATINQFTFYSLQASTMDRHI-T 359
Query: 356 EKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAM 415
+ P SF VF ILTLTIWVAIYD+++VPLL+KFT + GL+ +QR+GIGL ISC+A
Sbjct: 360 PHFQFPAASFAVFTILTLTIWVAIYDQIIVPLLAKFTKKSNGLTLKQRMGIGLVISCLAS 419
Query: 416 AVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF 475
V+A +ERKRR+ AI EGLA+ P G+V L+AMWLVPQ+CL GLAEA NAIGQI+F+YSQ
Sbjct: 420 IVSAEIERKRRNRAIHEGLANVPGGIVQLSAMWLVPQHCLAGLAEALNAIGQIQFFYSQL 479
Query: 476 PKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILC 535
P++M+SI VAL SLGM G+LV +L V+++ + T GK W+S N+N+ HYDYYYW+L
Sbjct: 480 PRSMASIAVALFSLGMGGGSLVAALTVSVVKKRTKKNGK-GWLSNNLNQGHYDYYYWVLS 538
Query: 536 ILSVVNFFYFIACSWAYGS----CEDIKVWDEGEAMK 568
++ V N Y++ CSW YG E ++WD+ EA++
Sbjct: 539 LMGVANLLYYLICSWFYGDEKEGMEQSRIWDDKEAIE 575
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442569|ref|XP_002279092.1| PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/582 (56%), Positives = 429/582 (73%), Gaps = 4/582 (0%)
Query: 1 METNTNQ-EMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANV 59
+E N+ Q +M++ KGGL TMPFIIANEAFE+VA GL NMI YLI +YH+ +G N+
Sbjct: 3 VEANSEQRKMSQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLGVAKGTNI 62
Query: 60 LFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF 119
LFLW A +NFLP++GA +SDS+LGRF I LG+ T+LLGMILLWLTA+IP +PP C+
Sbjct: 63 LFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTKPPHCDLL 122
Query: 120 IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179
+ C A Q L+SSF LMSIGAGG+RPCSLAFGADQ DNP NER+L++FF+WY
Sbjct: 123 TQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNERVLESFFSWY 182
Query: 180 YASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFT 239
YAS LS + ++T IVYIQ GW VGFGVP LM F+ ++F L S YIK KA++ L T
Sbjct: 183 YASAALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYIKQKASRSLLT 242
Query: 240 GFGQVISAAWKNRHLPLPPTDADRWYYY-KGSKLTAPTEKLRFLNRACVVQNREKELDLD 298
GF QV+ A+KNR L PP + D WY+Y K SKL PT++LRFLN+AC++++ E++++ D
Sbjct: 243 GFVQVLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACIIRSPERDINSD 302
Query: 299 GKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKL 358
G A PW LCTV QVEELKA+IKV+P+WS+GIM+++ S +FP LQA SMDRH+FS
Sbjct: 303 GLASNPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANSMDRHVFSS-F 361
Query: 359 KIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVA 418
+IP GS+ +F ++ L +WVA+YDRV++PL SK + L +QR+GIGL +SC+ M VA
Sbjct: 362 QIPAGSYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLFLSCLGMVVA 421
Query: 419 ALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKT 478
A+VE RR AIR+GL +NP+ +V ++AMWLVPQ CL GLAEAFNAIGQ EFYYS+FPK+
Sbjct: 422 AIVENVRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTEFYYSEFPKS 481
Query: 479 MSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILS 538
MSSI AL LGMAV NL+ S+I++ +N +T GGK SWVS N+N+ HYD YYW+L I+S
Sbjct: 482 MSSIAAALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDNYYWLLAIMS 541
Query: 539 VVNFFYFIACSWAYGSCEDIKVWDEGEAMK-EHEMPPTKESP 579
+N Y++ CS+ YG C + DE E +K E E+ ++SP
Sbjct: 542 AINLLYYLVCSYFYGPCVEQGTKDEVEGLKDEEELSKLRQSP 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743243|emb|CBI36110.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/577 (56%), Positives = 430/577 (74%), Gaps = 6/577 (1%)
Query: 1 METNTNQ-EMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANV 59
+E N+ Q +M++ KGGL TMPFIIANEAFE+VA GL NMI YLI +YH+ +G N+
Sbjct: 3 VEANSEQRKMSQRAKGGLITMPFIIANEAFERVASYGLLPNMILYLIQDYHLGVAKGTNI 62
Query: 60 LFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF 119
LFLW A +NFLP++GA +SDS+LGRF I LG+ T+LLGMILLWLTA+IP +PP C+
Sbjct: 63 LFLWSAATNFLPVVGAFLSDSYLGRFLTIGLGSITSLLGMILLWLTAMIPKTKPPHCDLL 122
Query: 120 IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179
+ C A Q L+SSF LMSIGAGG+RPCSLAFGADQ DNP NER+L++FF+WY
Sbjct: 123 TQSCKAPTAAQFILLYSSFALMSIGAGGVRPCSLAFGADQLDKRDNPKNERVLESFFSWY 182
Query: 180 YASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFT 239
YAS LS + ++T IVYIQ GW VGFGVP LM F+ ++F L S YIK KA++ L T
Sbjct: 183 YASAALSVVIALTGIVYIQVHLGWRVGFGVPAILMFFAALLFFLASPFYIKQKASRSLLT 242
Query: 240 GFGQVISAAWKNRHLPLPPTDADRWYYY-KGSKLTAPTEKLRFLNRACVVQNREKELDLD 298
GF QV+ A+KNR L PP + D WY+Y K SKL PT++LRFLN+AC++++ E++++ D
Sbjct: 243 GFVQVLVVAYKNRKLAFPPRNTDGWYHYSKDSKLVVPTDRLRFLNKACIIRSPERDINSD 302
Query: 299 GKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKL 358
G A PW LCTV QVEELKA+IKV+P+WS+GIM+++ S +FP LQA SMDRH+FS
Sbjct: 303 GLASNPWSLCTVDQVEELKALIKVIPMWSTGIMMSINTSNSSFPVLQANSMDRHVFSS-F 361
Query: 359 KIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVA 418
+IP GS+ +F ++ L +WVA+YDRV++PL SK + L +QR+GIGL +SC+ M VA
Sbjct: 362 QIPAGSYAMFLVIVLFLWVALYDRVILPLASKVRGKRVRLGVKQRMGIGLFLSCLGMVVA 421
Query: 419 ALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKT 478
A+VE RR AIR+GL +NP+ +V ++AMWLVPQ CL GLAEAFNAIGQ EFYYS+FPK+
Sbjct: 422 AIVENVRRRKAIRQGLLNNPQTLVGMSAMWLVPQYCLYGLAEAFNAIGQTEFYYSEFPKS 481
Query: 479 MSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILS 538
MSSI AL LGMAV NL+ S+I++ +N +T GGK SWVS N+N+ HYD YYW+L I+S
Sbjct: 482 MSSIAAALFGLGMAVANLLASVILSAVNHLTSRGGKESWVSNNINKGHYDNYYWLLAIMS 541
Query: 539 VVNFFYFIACSWAYGSC--EDIKVWDEGEAMK-EHEM 572
+N Y++ CS+ YG C + KV DEG++M+ E+E+
Sbjct: 542 AINLLYYLVCSYFYGPCVEQGTKVSDEGKSMEGENEL 578
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511367|ref|XP_003524398.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/563 (60%), Positives = 423/563 (75%), Gaps = 9/563 (1%)
Query: 1 METNTNQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVL 60
ME E+ + KKGG RT+PFIIANE FEKVA VGLH NMI YL+ EYH GA ++
Sbjct: 6 MEQKKATELVERKKGGYRTIPFIIANETFEKVANVGLHVNMILYLLQEYHFDPATGAIII 65
Query: 61 FLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI 120
FLW A+SNF PI GA +SDS+LGRFRVIALG L+G+++LWLTAI ARP +C+ +
Sbjct: 66 FLWNALSNFFPIFGAFLSDSWLGRFRVIALGIVIDLVGLVVLWLTAIFRHARP-QCD--V 122
Query: 121 EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180
E C QL FLFSS LM++GAGGIRPC+LAF ADQ +NP+NP+NER +++ FNWYY
Sbjct: 123 EPCANPTTLQLLFLFSSLALMALGAGGIRPCTLAFTADQINNPENPHNERTMKSLFNWYY 182
Query: 181 ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTG 240
ASVG+S S+T IVYIQ KAGWVVGFG+PV LM FS +MF LGS LY K K NK L T
Sbjct: 183 ASVGISVTVSMTFIVYIQVKAGWVVGFGIPVALMTFSAIMFFLGSCLYKKVKPNKSLLTS 242
Query: 241 FGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGK 300
QVI AAWKNRHLP+ P ++D WY++ GS L PT K RFLN+AC+++NREK+LD
Sbjct: 243 LAQVIVAAWKNRHLPMSPKNSDIWYFHNGSNLVQPTGKARFLNKACMMKNREKDLDSGEM 302
Query: 301 AIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKI 360
I+PW LCTV+QVEELKAIIKVLPIWS+GI++A +ISQ +F +QA++M+R +F + I
Sbjct: 303 PIDPWSLCTVRQVEELKAIIKVLPIWSTGIILATSISQQSFSIVQAQTMNRVVF--HMTI 360
Query: 361 PPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAAL 420
PP +F F ILTLTIWV +YDR++VPL K R L+ +QR+GIGL ISC+A VAAL
Sbjct: 361 PPTNFAAFIILTLTIWVVVYDRILVPLFPK----ERVLTVKQRMGIGLLISCLATLVAAL 416
Query: 421 VERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMS 480
VERKRR+ AI+EG DNP+GVV ++AMWLVPQ CL GLAE N IGQIEFYYSQFPKTMS
Sbjct: 417 VERKRRNEAIKEGFIDNPKGVVNMSAMWLVPQYCLYGLAEGLNIIGQIEFYYSQFPKTMS 476
Query: 481 SIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVV 540
SI V+L +LG+ +GN++GSLIV ++ T GG+ SW+++N+NR HYDYYY +L IL++V
Sbjct: 477 SIAVSLCALGIGMGNVLGSLIVKVVKDGTKRGGEASWLASNINRGHYDYYYALLFILNLV 536
Query: 541 NFFYFIACSWAYGSCEDIKVWDE 563
N F S YGS DIK W+E
Sbjct: 537 NLLCFFIWSRIYGSTCDIKNWEE 559
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523840|ref|XP_003530542.1| PREDICTED: probable peptide transporter At1g52190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/563 (57%), Positives = 415/563 (73%), Gaps = 9/563 (1%)
Query: 1 METNTNQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVL 60
ME E+ + KKGG RTMPFIIANE FEKVA VGL NMI YL+ EYH G ++
Sbjct: 5 MEQKKATELLERKKGGWRTMPFIIANETFEKVAVVGLRVNMILYLLQEYHFDPATGTIIM 64
Query: 61 FLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI 120
FLW A++N LPI A +SDS LGRFRVIA+GT L+G+++LWLT II ARP +C+
Sbjct: 65 FLWNALTNLLPIFCAFLSDSCLGRFRVIAMGTVIHLVGLVVLWLTTIIRHARP-QCDT-- 121
Query: 121 EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180
E C QL LFSS LM++GA GIR C+LAF ADQ +NP+NP NER +++FFNWYY
Sbjct: 122 EPCANPTVPQLLILFSSLTLMALGASGIRSCTLAFTADQIYNPENPQNERTMKSFFNWYY 181
Query: 181 ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTG 240
SV +S S+ IVYIQ KAGWVVGFG+ +G++ S +MF LG+S+Y+K K NK L TG
Sbjct: 182 LSVAISVTISMAFIVYIQVKAGWVVGFGISMGIVSLSAIMFFLGTSIYVKVKPNKSLLTG 241
Query: 241 FGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGK 300
F QVI AAWKNRHLPLPP ++D WY+ GS L PT K+RFLN+AC+++NREK+LD +G+
Sbjct: 242 FAQVIVAAWKNRHLPLPPKNSDIWYFRNGSNLVQPTNKVRFLNKACIIKNREKDLDYEGR 301
Query: 301 AIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKI 360
EPW LCTV+QVEELKAIIKVLPIWS+GI++A T+SQ F +QA +MDR +F + I
Sbjct: 302 PNEPWSLCTVRQVEELKAIIKVLPIWSTGIILATTVSQQQFFIVQAGTMDRMVFG--IDI 359
Query: 361 PPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAAL 420
P +F +F +LTLT+WV +YDR++VP+L R L+ + R+GIGL ISC+A VA L
Sbjct: 360 PATNFALFMMLTLTMWVIVYDRILVPILPN----QRILTVKLRMGIGLVISCLATLVATL 415
Query: 421 VERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMS 480
VE+KRR+ AI EG DNP+GVV ++AMWLVP CL GLA+ F IGQIEF+YSQFPKTMS
Sbjct: 416 VEKKRRNQAISEGFIDNPKGVVNMSAMWLVPSYCLFGLAQGFTVIGQIEFFYSQFPKTMS 475
Query: 481 SIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVV 540
++ V+L +L + VGNLVGSLI+ ++ T GG+ SW+++N+NR HYDYYY +L IL++V
Sbjct: 476 TVAVSLSTLNIGVGNLVGSLIIKVVKDGTRRGGRASWLASNINRGHYDYYYGLLFILNLV 535
Query: 541 NFFYFIACSWAYGSCEDIKVWDE 563
N F+ S AYGS +DIK WDE
Sbjct: 536 NLVCFLVWSRAYGSTQDIKDWDE 558
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255549914|ref|XP_002516008.1| nitrate transporter, putative [Ricinus communis] gi|223544913|gb|EEF46428.1| nitrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/576 (53%), Positives = 409/576 (71%), Gaps = 4/576 (0%)
Query: 1 METNTNQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVL 60
M + Q KS+KGGL TMPFIIANEAFEKV+ GL NMIFYL+ +Y + +GAN++
Sbjct: 16 MASTHQQHTPKSRKGGLITMPFIIANEAFEKVSSYGLLPNMIFYLMKDYGLGVAKGANII 75
Query: 61 FLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI 120
FLW A +NF+P++GA ISDS+LGR+ I LG+ +LLG +LLWLT +IP ++PP C+
Sbjct: 76 FLWNAATNFMPLLGAFISDSYLGRYLTIGLGSIFSLLGTVLLWLTTMIPQSKPPLCDLMT 135
Query: 121 EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180
+ C + Q+ L SS +SIGAGGIRPCSLAFGADQ N NP NERIL+++F WYY
Sbjct: 136 QNCKSPTAGQITMLLSSMAFISIGAGGIRPCSLAFGADQLDNKSNPKNERILESYFGWYY 195
Query: 181 ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTG 240
AS +S + ++T IVYIQD GW VGFGVP L+ S +F + S LY+K KA+K L G
Sbjct: 196 ASTAISVLIALTGIVYIQDHHGWRVGFGVPAILVFLSAFLFFIASPLYLKQKASKSLLAG 255
Query: 241 FGQVISAAWKNRHLPLPPTDADRWYY-YKGSKLTAPTEKLRFLNRACVVQNREKELDLDG 299
F QV+ A+KNR +P PPT++D Y+ K S+ PTE +RFLN+AC+++N E++L DG
Sbjct: 256 FAQVLVVAYKNRKIPFPPTNSDSKYHRRKNSEYITPTENIRFLNKACIIRNAEQDLAPDG 315
Query: 300 KAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLK 359
A PW LCT++QVEELKA+I+V+PIWS+GIM+++ +SQ +F LQA SMDRH+ S K +
Sbjct: 316 SASNPWSLCTIEQVEELKALIRVIPIWSTGIMMSINVSQGSFQVLQASSMDRHL-SSKFQ 374
Query: 360 IPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAA 419
+P GSF F ++++ IW+ +YDR ++PL +K +P L + R+GIGL +SC+ M VA
Sbjct: 375 VPAGSFATFVVISMAIWIVLYDRAILPLATKIKGKPVRLGVKLRMGIGLFLSCMGMVVAG 434
Query: 420 LVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTM 479
+VE RR AI EG +NP VV ++A WL PQ CL G AEA NAIGQ EFYY++FPK+M
Sbjct: 435 IVENVRRRKAIHEGYLNNPNAVVQMSAFWLAPQYCLNGFAEALNAIGQTEFYYTEFPKSM 494
Query: 480 SSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSV 539
SSI AL LGMAV NL+ ++I++++N +T GGKV WV +N+N+ HYD YYW+L I+S
Sbjct: 495 SSIAGALFGLGMAVANLLATVILSLVNNITSKGGKVGWVPSNINQGHYDNYYWLLAIMSA 554
Query: 540 VNFFYFIACSWAYGSCED--IKVWDEGEAMKEHEMP 573
VN YF+ CSW YG C++ KV DEG K E P
Sbjct: 555 VNLLYFLICSWGYGPCKEQITKVSDEGNGFKHEEEP 590
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476042|ref|XP_002281400.2| PREDICTED: probable peptide transporter At1g52190-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/568 (54%), Positives = 413/568 (72%), Gaps = 5/568 (0%)
Query: 11 KSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFL 70
+S+ GG RTMPFII NE FE+++ +GL NMI YL+ Y+M +G+NVLF+W A+++ L
Sbjct: 19 ESRLGGFRTMPFIIVNEVFERISSLGLMPNMILYLMRGYNMKAVDGSNVLFIWSAVTHAL 78
Query: 71 PIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQ 130
I GA +SD++LGRFRVIALG+F++L GMILLW TA+IP +P C F + C A P Q
Sbjct: 79 AIFGAFLSDAYLGRFRVIALGSFSSLTGMILLWFTAVIPGMKPQPCEQFKDDCNPATPAQ 138
Query: 131 LGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMAS 190
L LFSSF L+SIGAG IRPCS+AFGADQ + +NP++ERIL +FFNWYYAS +S + S
Sbjct: 139 LAVLFSSFGLISIGAGCIRPCSMAFGADQL-DKENPDSERILDSFFNWYYASSAMSTVIS 197
Query: 191 ITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWK 250
+T+IVYIQD GW GFGVP LM FS +MFL GSSLY+K K + LFTGF QV A+K
Sbjct: 198 LTIIVYIQDHLGWNFGFGVPAILMFFSALMFLFGSSLYVKEKPSSSLFTGFVQVPFVAFK 257
Query: 251 NRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTV 310
NRHL PP D+D +Y++ K PT +LR+LNRAC++++ ++L DG W +C+V
Sbjct: 258 NRHLN-PPCDSDEYYHHSHDKKLTPTNQLRWLNRACMIRDPGRDLSSDGSDPNSWSICSV 316
Query: 311 KQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAI 370
+QVE LK +++++PIWS+GIMI V++ Q +F LQA +MDR++ + KIP SF V +
Sbjct: 317 EQVESLKTLLRLIPIWSTGIMILVSMGQTSFTTLQANTMDRYL-TPNFKIPAASFAVSTV 375
Query: 371 LTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAI 430
+ LTIW+ IYD V+VP+L+++T PRGLS + R+GIGL +SCVAMAV A+ E RR A
Sbjct: 376 VVLTIWIPIYDIVLVPILARYTGCPRGLSMKFRMGIGLVLSCVAMAVGAITESVRRRIAN 435
Query: 431 REGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLG 490
+GL + P + ++AMWL+PQ L G AEAF+AIGQIEFYYSQF K+MSSI VAL ++G
Sbjct: 436 EQGLDEQPAATLNMSAMWLLPQFILFGFAEAFSAIGQIEFYYSQFSKSMSSIAVALFTVG 495
Query: 491 MAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSW 550
+A NLVGSL+V ++N VT GGK SW+S+N+N+ H DYYYW++ IL ++N YF+ C W
Sbjct: 496 IAGSNLVGSLLVNVVNSVTSKGGKESWLSSNLNKGHLDYYYWLITILCLINIIYFLVCCW 555
Query: 551 AYGSCEDIK--VWDEGEAMKEHEMPPTK 576
+YG ED K + DEGEA E+ P+
Sbjct: 556 SYGPFEDEKPGISDEGEANIEYRALPSS 583
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| TAIR|locus:2037452 | 607 | AT1G52190 [Arabidopsis thalian | 0.950 | 0.915 | 0.523 | 9.3e-162 | |
| TAIR|locus:2093442 | 591 | AT3G16180 [Arabidopsis thalian | 0.960 | 0.950 | 0.510 | 1.3e-157 | |
| TAIR|locus:2196800 | 620 | NRT1.7 "nitrate transporter 1. | 0.957 | 0.903 | 0.387 | 7.8e-110 | |
| TAIR|locus:2026884 | 596 | AT1G68570 [Arabidopsis thalian | 0.905 | 0.889 | 0.402 | 9.5e-105 | |
| TAIR|locus:2144281 | 481 | AT5G11570 [Arabidopsis thalian | 0.411 | 0.501 | 0.458 | 8.3e-104 | |
| TAIR|locus:2035005 | 587 | NRT1.9 "nitrate transporter 1. | 0.905 | 0.902 | 0.375 | 2.3e-101 | |
| TAIR|locus:2172249 | 616 | GTR2 "AT5G62680" [Arabidopsis | 0.950 | 0.902 | 0.356 | 6.2e-101 | |
| TAIR|locus:2205719 | 576 | NRT1.6 "nitrate transporter 1. | 0.938 | 0.953 | 0.365 | 1.3e-98 | |
| TAIR|locus:2018032 | 590 | PTR6 "peptide transporter 6" [ | 0.887 | 0.879 | 0.388 | 2.1e-93 | |
| TAIR|locus:2041125 | 585 | PTR2 "peptide transporter 2" [ | 0.916 | 0.916 | 0.362 | 2.7e-93 |
| TAIR|locus:2037452 AT1G52190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1575 (559.5 bits), Expect = 9.3e-162, P = 9.3e-162
Identities = 296/565 (52%), Positives = 399/565 (70%)
Query: 2 ETNTNQEMT---KSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGAN 58
ET Q T K KGG+ TMPFIIANEAFEKVA GL NMI YLI +Y +G N
Sbjct: 7 ETEAKQIQTNEGKKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTN 66
Query: 59 VLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118
VLF+W A SNF P++GA +SDS+LGRF I++ + ++ LGM+LLWLTA++P +P C+P
Sbjct: 67 VLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDP 126
Query: 119 FI--EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176
C ++ QL L+S+F L+SIG+GGIRPCSLAFGADQ N +NP NER+L++FF
Sbjct: 127 TAAGSHCGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFF 186
Query: 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKV 236
WYYAS ++ + + T IVYIQ+ GW +GFGVP LML + ++F+L S LY+ K
Sbjct: 187 GWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFILASPLYVTRGVTKS 246
Query: 237 LFTGFGQVISAAWKNRHLPLPPT-DA-DRWYYYKGSKLTAPTEKLRFLNRACVVQNREKE 294
LFTG Q I AA+K R L LP D+ D +Y+ K S++ AP++KLRFLN+AC++ NRE+E
Sbjct: 247 LFTGLAQAIVAAYKKRKLSLPDHHDSFDCYYHMKDSEIKAPSQKLRFLNKACLISNREEE 306
Query: 295 LDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHI- 353
+ DG A+ PW+LCT +VEELKA+IKV+PIWS+GIM+++ SQ +F LQA SMDR +
Sbjct: 307 IGSDGFALNPWRLCTTDKVEELKALIKVIPIWSTGIMMSINTSQSSFQLLQATSMDRRLS 366
Query: 354 -FSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISC 412
++P GSFG+F I+ L +WV +YDR V+PL SK RP LS + R+G+GL +S
Sbjct: 367 RHGSSFQVPAGSFGMFTIIALALWVILYDRAVIPLASKIRGRPFRLSVKLRMGLGLFMSF 426
Query: 413 VAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYY 472
+AMA++A+VE RR AI +G A+N VV ++AMWLVPQ L GLAEA AIGQ EF+Y
Sbjct: 427 LAMAISAMVESFRRKKAISQGYANNSNAVVDISAMWLVPQYVLHGLAEALTAIGQTEFFY 486
Query: 473 SQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYW 532
++FPK+MSSI +L LGMAV +L+ S+++ +N +T GK SWVS N+N+ HY+YYYW
Sbjct: 487 TEFPKSMSSIAASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYW 546
Query: 533 ILCILSVVNFFYFIACSWAYGSCED 557
+L I+S +N Y++ CSW+YG D
Sbjct: 547 VLAIMSFINVIYYVICSWSYGPLVD 571
|
|
| TAIR|locus:2093442 AT3G16180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1536 (545.8 bits), Expect = 1.3e-157, P = 1.3e-157
Identities = 292/572 (51%), Positives = 400/572 (69%)
Query: 7 QEMTKSK-KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGA 65
Q +T+ + KGGL TMPFIIANE FEKVA GL NMI YL+ +Y + +G VLF+W A
Sbjct: 16 QPITRRRTKGGLLTMPFIIANEGFEKVASYGLLQNMILYLMSDYRLGLVKGQTVLFMWVA 75
Query: 66 ISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEI-CP 124
+NF+P++GA +SDS+LGRF I + + ++LLGM++LWLTA++P +P C C
Sbjct: 76 ATNFMPLVGAFLSDSYLGRFLTIVIASLSSLLGMVVLWLTAMLPQVKPSPCVATAGTNCS 135
Query: 125 AAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVG 184
+A QL L+++F L+SIG+GGIRPCSLAFGADQ N +NP NER+L++FF WYYAS
Sbjct: 136 SATSSQLALLYTAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSS 195
Query: 185 LSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQV 244
++ + + T+IVYIQD GW +GFG+P LML + +F+ S LY+K +K LFTG QV
Sbjct: 196 VAVLIAFTVIVYIQDHLGWKIGFGIPAILMLLAGFLFVFASPLYVKRDVSKSLFTGLAQV 255
Query: 245 ISAAWKNRHLPLPPTDADRWYYY--KGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAI 302
++AA+ R+L LP R YY K S+L AP++KLRFLN+AC + NR+++L DG A+
Sbjct: 256 VAAAYVKRNLTLPDHHDSRDCYYRLKDSELKAPSDKLRFLNKACAISNRDEDLGSDGLAL 315
Query: 303 EPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEK-LKIP 361
W+LCT QVE+LKA++KV+P+WS+GIM+++ +SQ +F LQAKSMDR + S +IP
Sbjct: 316 NQWRLCTTDQVEKLKALVKVIPVWSTGIMMSINVSQNSFQLLQAKSMDRRLSSNSTFQIP 375
Query: 362 PGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALV 421
GSFG+F I+ L WV +YDR ++PL SK RP ++ + R+G+GL IS +AMAV+A V
Sbjct: 376 AGSFGMFTIIALISWVVLYDRAILPLASKIRGRPVRVNVKIRMGLGLFISFLAMAVSATV 435
Query: 422 ERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSS 481
E RR AI +GLA++ V+++AMWLVPQ L GLAEA IGQ EF+Y++FPK+MSS
Sbjct: 436 EHYRRKTAISQGLANDANSTVSISAMWLVPQYVLHGLAEALTGIGQTEFFYTEFPKSMSS 495
Query: 482 IGVALLSLGMAVGNLVGSLIVTILNRVTGSG--GKVSWVSTNVNRAHYDYYYWILCILSV 539
I +L LGMAV N++ S+I LN V S G VSW+ N+N+ HYDYYYW+L ILS
Sbjct: 496 IAASLFGLGMAVANILASVI---LNAVKNSSKQGNVSWIEDNINKGHYDYYYWVLAILSF 552
Query: 540 VNFFYFIACSWAYGSCEDIKVWDEGEAMKEHE 571
VN Y++ CSW+YG D D+ M++ E
Sbjct: 553 VNVIYYVVCSWSYGPTVDQVRNDKVNGMRKEE 584
|
|
| TAIR|locus:2196800 NRT1.7 "nitrate transporter 1.7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
Identities = 225/581 (38%), Positives = 341/581 (58%)
Query: 8 EMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAIS 67
E + K GG R + FI+ NE E++ +GL AN + YL +H+ + ANV+ +W +
Sbjct: 46 EKVEKKPGGWRAVSFILGNETLERLGSIGLLANFMVYLTKVFHLEQVDAANVINIWSGFT 105
Query: 68 NFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEI-CPAA 126
N P++GA ISD+++GRF+ IA +F LLG+I + LTA P P CN + C
Sbjct: 106 NLTPLVGAYISDTYVGRFKTIAFASFATLLGLITITLTASFPQLHPASCNSQDPLSCGGP 165
Query: 127 KPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERI--LQTFFNWYYASVG 184
Q+G L +S+G+GGIRPCS+ FG DQF D E + + +FFNWYY +
Sbjct: 166 NKLQIGVLLLGLCFLSVGSGGIRPCSIPFGVDQF---DQRTEEGVKGVASFFNWYYMTFT 222
Query: 185 LSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQV 244
+ + + T++VYIQD+ W++GF +P GLM + VMF G Y+ K +F+G QV
Sbjct: 223 VVLIITQTVVVYIQDQVSWIIGFSIPTGLMALAVVMFFAGMKRYVYVKPEGSIFSGIAQV 282
Query: 245 ISAAWKNRHLPLPPTDADRWYYY----KGSKLTA--PTEKLRFLNRACVVQNREKELDLD 298
I AA K R L LP D YY K S L+ + + R L++A VV E +L +
Sbjct: 283 IVAARKKRKLKLPAEDDGTVTYYDPAIKSSVLSKLHRSNQFRCLDKAAVVI--EGDLTPE 340
Query: 299 GKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIM-IAVTISQYTFPQLQAKSMDRHIFSEK 357
G + W+LC+V++VEE+K +I+++PIWS+GI+ +A +Q TF QA MDR++ K
Sbjct: 341 GPPADKWRLCSVQEVEEVKCLIRIVPIWSAGIISLAAMTTQGTFTVSQALKMDRNL-GPK 399
Query: 358 LKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAV 417
+IP GS V ++LT+ I++ YDRV VP + + T G++ QRIG G+ + +M V
Sbjct: 400 FEIPAGSLSVISLLTIGIFLPFYDRVFVPFMRRITGHKSGITLLQRIGTGIVFAIFSMIV 459
Query: 418 AALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPK 477
A +VER RR +I G +P G+ ++ WL PQ L+GL EAFN IGQIEF+ SQFP+
Sbjct: 460 AGIVERMRRIRSINAG---DPTGMTPMSVFWLSPQLILMGLCEAFNIIGQIEFFNSQFPE 516
Query: 478 TMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCIL 537
M SI +L SL A + + S +VT++++ +G + W++ N+N DY+Y+++ +L
Sbjct: 517 HMRSIANSLFSLSFAGSSYLSSFLVTVVHKFSGGHDRPDWLNKNLNAGKLDYFYYLIAVL 576
Query: 538 SVVNFFYFIACS--WAYGSCEDIKVWDEGEAMKEHEMPPTK 576
VVN YF C+ + Y I+ ++E ++ + EM K
Sbjct: 577 GVVNLVYFWYCARGYRYKVGLPIEDFEEDKSSDDVEMTSKK 617
|
|
| TAIR|locus:2026884 AT1G68570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 222/551 (40%), Positives = 327/551 (59%)
Query: 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPII 73
KGGL TMPFI ANE EK+A VG HANMI YL + H+ + AN L + S+ P++
Sbjct: 24 KGGLITMPFIFANEICEKLAVVGFHANMISYLTTQLHLPLTKAANTLTNFAGTSSLTPLL 83
Query: 74 GASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGF 133
GA I+DSF GRF I + +GM LL ++AIIP RPP C E+C A QL
Sbjct: 84 GAFIADSFAGRFWTITFASIIYQIGMTLLTISAIIPTLRPPPCKGE-EVCVVADTAQLSI 142
Query: 134 LFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITL 193
L+ + +L ++G+GGIRPC +AFGADQF D PN +FNWYY +G + + ++T+
Sbjct: 143 LYVALLLGALGSGGIRPCVVAFGADQFDESD-PNQTTKTWNYFNWYYFCMGAAVLLAVTV 201
Query: 194 IVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLY--IKPKANKVLFTGFGQVISAAWKN 251
+V+IQD GW +G G+P M S + F+ G LY + P + FT QV AA++
Sbjct: 202 LVWIQDNVGWGLGLGIPTVAMFLSVIAFVGGFQLYRHLVPAGSP--FTRLIQVGVAAFRK 259
Query: 252 RHLPLPPTDADRWYYYK--------GSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIE 303
R L + +D Y+ G KLT T+ + FL++A +V E L G+
Sbjct: 260 RKLRMV-SDPSLLYFNDEIDAPISLGGKLTH-TKHMSFLDKAAIV-TEEDNLK-PGQIPN 315
Query: 304 PWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQY-TFPQLQAKSMDRHIFSEKLKIPP 362
W+L TV +VEELK++I++ PI +SGI++ +Q TF QAK+M+RH+ + +IP
Sbjct: 316 HWRLSTVHRVEELKSVIRMGPIGASGILLITAYAQQGTFSLQQAKTMNRHL-TNSFQIPA 374
Query: 363 GSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVE 422
GS VF + + + YDRV V + KFT RG+++ R+GIG IS +A VA VE
Sbjct: 375 GSMSVFTTVAMLTTIIFYDRVFVKVARKFTGLERGITFLHRMGIGFVISIIATLVAGFVE 434
Query: 423 RKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSI 482
KR+S AI GL D P +V ++ +WL+PQ L G+AEAF +IG +EF+Y Q P++M S
Sbjct: 435 VKRKSVAIEHGLLDKPHTIVPISFLWLIPQYGLHGVAEAFMSIGHLEFFYDQAPESMRST 494
Query: 483 GVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWV-STNVNRAHYDYYYWILCILSVVN 541
AL + +++GN V +L+VT++++ + +W+ N+NR +Y+YW++ +L VN
Sbjct: 495 ATALFWMAISIGNYVSTLLVTLVHKFSAKPDGSNWLPDNNLNRGRLEYFYWLITVLQAVN 554
Query: 542 FFYFIACSWAY 552
Y++ C+ Y
Sbjct: 555 LVYYLWCAKIY 565
|
|
| TAIR|locus:2144281 AT5G11570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 8.3e-104, Sum P(2) = 8.3e-104
Identities = 116/253 (45%), Positives = 164/253 (64%)
Query: 304 PWKLCTVKQVEELKAIIKVLPIWSSGIMIA-VTISQYTFPQLQAKSMDRHIFSEKLKIPP 362
PWKLC V+QVE+LK++I V+PIWS+GI+++ VT Q +F LQAK+MDRH F + +IPP
Sbjct: 238 PWKLCRVQQVEDLKSLINVIPIWSTGIILSLVTACQVSFIVLQAKTMDRHTFIQGFEIPP 297
Query: 363 GSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVE 422
GS+G+F +++ +++ +YD V+VPLLS P L R+ G IS + ++ A E
Sbjct: 298 GSYGIFLVISFLLFLGLYDLVIVPLLSWALREPFRLGVMVRMWAGYVISVLCISALAATE 357
Query: 423 RKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSI 482
RR A R+ E L+AMWL+P L G+AEA N I Q EF+YS+ PKTMSS+
Sbjct: 358 YARRKTA-RD------ESGTKLSAMWLLPYMILGGIAEALNTIAQNEFFYSELPKTMSSV 410
Query: 483 GVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNF 542
L SL MA +L+ S I+TI++ VT G SW++ N++ H DYYYW+L LS++N
Sbjct: 411 ATTLSSLNMAAASLISSWIITIVD-VTTYG---SWITENIDEGHLDYYYWLLVGLSLLNV 466
Query: 543 FYFIACSWAYGSC 555
YF+ C +YG C
Sbjct: 467 LYFVWCKKSYGKC 479
|
|
| TAIR|locus:2035005 NRT1.9 "nitrate transporter 1.9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 205/546 (37%), Positives = 327/546 (59%)
Query: 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGA 75
G + MPFII NE FEK+ VG +N++ YL ++M A V+ ++G SNF I+ A
Sbjct: 22 GWKVMPFIIGNETFEKLGIVGSSSNLVIYLTTVFNMKSITAAKVVNIYGGTSNFGTIVAA 81
Query: 76 SISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI-EICPAAKPRQLGFL 134
+ DS+ GR++ ++ LG + + LTA+I P +C I +C Q+ FL
Sbjct: 82 FLCDSYFGRYKTLSFAMIACFLGSVAMDLTAVIHPLHPAQCAKEIGSVCNGPSIGQIMFL 141
Query: 135 FSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194
+ VL+ IGAGGIRPC+L FGADQF +P +R +++FFNWY+ + + M S+TLI
Sbjct: 142 AGAMVLLVIGAGGIRPCNLPFGADQF-DPKTKEGKRGIESFFNWYFFTFTFAQMVSLTLI 200
Query: 195 VYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHL 254
VY+Q W +G +P LML ++F GS LY+K KA+ +VI A K R L
Sbjct: 201 VYVQSNVSWSIGLAIPAILMLLGCIIFFAGSKLYVKVKASGSPIHSITRVIVVAIKKRRL 260
Query: 255 -PLPPTDADRWYY--YKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVK 311
P+ P + + +K SKL TE+ RFL+++ + Q ++ +L+ DG ++ WKLC+++
Sbjct: 261 KPVGPNELYNYIASDFKNSKL-GHTEQFRFLDKSAI-QTQDDKLNKDGSPVDAWKLCSMQ 318
Query: 312 QVEELKAIIKVLPIW-SSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAI 370
QVEE+K +I+VLP+W S+ + I Q T+ Q+ DR + +IP GS+ VF +
Sbjct: 319 QVEEVKCVIRVLPVWLSAALFYLAYIQQTTYTIFQSLQSDRRLGPGSFQIPAGSYTVFLM 378
Query: 371 LTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAI 430
L +TI++ IYDRV+VP L K+T R G++ QR+G GL + +M V+A+VE+ RR A+
Sbjct: 379 LGMTIFIPIYDRVLVPFLRKYTGRDGGITQLQRVGAGLFLCITSMMVSAIVEQYRRKVAL 438
Query: 431 RE---GLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL 487
+ GLA + +++ MWL+PQ L+G+A+A +GQ+EFYY QFP+ M S +L
Sbjct: 439 TKPTLGLAPRKGAISSMSGMWLIPQLVLMGIADALAGVGQMEFYYKQFPENMRSFAGSLY 498
Query: 488 SLGMAVGNLVGSLIVTILNRVT-G-SGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYF 545
G+ + + + + +++ ++ T G SGG SW+ ++N+ +Y+Y+++ + +N YF
Sbjct: 499 YCGIGLASYLSTFLLSAVHDTTEGFSGG--SWLPEDLNKGRLEYFYFLVAGMMTLNLAYF 556
Query: 546 IACS-W 550
+ S W
Sbjct: 557 LLVSHW 562
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| TAIR|locus:2172249 GTR2 "AT5G62680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
Identities = 204/572 (35%), Positives = 331/572 (57%)
Query: 7 QEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAI 66
Q K G + MPFII NE FEK+ +G +N++ YL +++ A ++ +
Sbjct: 37 QNQKKVVYRGWKVMPFIIGNETFEKLGIIGTLSNLLVYLTAVFNLKSITAATIINAFSGT 96
Query: 67 SNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIE-ICPA 125
NF + A + D++ GR++ +++ LG ++ LTA +P P C + IC
Sbjct: 97 INFGTFVAAFLCDTYFGRYKTLSVAVIACFLGSFVILLTAAVPQLHPAACGTAADSICNG 156
Query: 126 AKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185
Q+ FL + +GAGGIRPC+LAFGADQF NP + + +R + +FFNWY+ +
Sbjct: 157 PSGGQIAFLLMGLGFLVVGAGGIRPCNLAFGADQF-NPKSESGKRGIDSFFNWYFFTFTF 215
Query: 186 SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVI 245
+ + S+TL+VY+Q W +G +P LM + ++F G LY+K KA+ G QVI
Sbjct: 216 AQILSLTLVVYVQSNVSWTIGLTIPAVLMFLACLIFFAGDKLYVKIKASGSPLAGIAQVI 275
Query: 246 SAAWKNRHL-PLPPTDADRW-YY---YKGSKLTAPTEKLRFLNRACVVQNREKELDLDGK 300
+ A K R L P + + YY Y SKL T++ RFL++A ++ +K L DGK
Sbjct: 276 AVAIKKRGLKPAKQPWLNLYNYYPPKYANSKLKY-TDQFRFLDKAAILTPEDK-LQPDGK 333
Query: 301 AIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQY-TFPQLQAKSMDRHIFSEKLK 359
+PWKLCT++QVEE+K I++VLPIW + + +TI+Q T+P QA DR + S
Sbjct: 334 PADPWKLCTMQQVEEVKCIVRVLPIWFASSIYYLTITQQMTYPVFQALQSDRRLGSGGFV 393
Query: 360 IPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAA 419
IP ++ VF + +T+++ +YDRV+VP + + T G++ QRIG G+ + ++ VA
Sbjct: 394 IPAATYVVFLMTGMTVFIVVYDRVLVPTMRRITGLDTGITLLQRIGTGIFFATASLVVAG 453
Query: 420 LVERKRRSAAIRE---GLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFP 476
VE +RR+ A+ + G+A + +++AMWL+PQ L G+AEAF AIGQ+EFYY QFP
Sbjct: 454 FVEERRRTFALTKPTLGMAPRKGEISSMSAMWLIPQLSLAGVAEAFAAIGQMEFYYKQFP 513
Query: 477 KTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCI 536
+ M S ++ +G V + +GS ++ ++R T + +W++ ++N+ D +Y+++
Sbjct: 514 ENMRSFAGSIFYVGGGVSSYLGSFLIATVHRTTQNSSGGNWLAEDLNKGRLDLFYFMIAG 573
Query: 537 LSVVNFFYFIACS-W-AY-GSCEDIKVWDEGE 565
+ VNF YF+ S W Y GS +++ ++ E
Sbjct: 574 ILAVNFAYFLVMSRWYRYKGSDDEVTTYETNE 605
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| TAIR|locus:2205719 NRT1.6 "nitrate transporter 1.6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 211/578 (36%), Positives = 337/578 (58%)
Query: 6 NQEMTKSKK-GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWG 64
N+++ KK GG R + FI+ NE EK+ +G+ AN + YL +HM E NV +LW
Sbjct: 6 NRKILPEKKLGGWRAITFILGNETLEKLGSIGVSANFMLYLRNVFHMEPVEAFNVYYLWM 65
Query: 65 AISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCN-PFIEIC 123
++NF P++GA ISD+++GRF+ IA + ++LG++ + LTA +P PP CN P + C
Sbjct: 66 GLTNFAPLLGALISDAYIGRFKTIAYASLFSILGLMTVTLTACLPQLHPPPCNNPHPDEC 125
Query: 124 PAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASV 183
QLG LF +SIG+GGIRPCS+ FG DQF + + +FFNWYY ++
Sbjct: 126 DDPNKLQLGILFLGLGFLSIGSGGIRPCSIPFGVDQFDQRTEQGLKGVA-SFFNWYYLTL 184
Query: 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQ 243
+ + S T++VY+Q WV+GF +P LM + V+F +G Y+ K +F+G +
Sbjct: 185 TMVLIFSHTVVVYLQT-VSWVIGFSIPTSLMACAVVLFFVGMRFYVYVKPEGSVFSGIAR 243
Query: 244 VISAAWKNRHLPLPPTDADRWYYYK-----G--SKLTAPTEKLRFLNRACVVQNREKELD 296
VI AA K R L + D YY+ G SKL T++ +FL++A V+ + +L
Sbjct: 244 VIVAARKKRDLKISLVDDGTEEYYEPPVKPGVLSKLPL-TDQFKFLDKAAVIL--DGDLT 300
Query: 297 LDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTIS-QYTFPQLQAKSMDRHIFS 355
+G W+LC++++VEE+K +I+V+P+WS+GI+ V ++ Q TF QA MDRH+
Sbjct: 301 SEGVPANKWRLCSIQEVEEVKCLIRVVPVWSAGIISIVAMTTQATFMVFQATKMDRHM-G 359
Query: 356 EKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAM 415
+IP S V + +T+ IWV IY+ ++VP L + R ++ QR+GIG+ + ++M
Sbjct: 360 PHFEIPAASITVISYITIGIWVPIYEHLLVPFLWRM--RKFRVTLLQRMGIGIVFAILSM 417
Query: 416 AVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF 475
A VE RR+ A + ++ WL L+GL E+FN IG IEF+ SQF
Sbjct: 418 FTAGFVEGVRRTRATE---------MTQMSVFWLALPLILMGLCESFNFIGLIEFFNSQF 468
Query: 476 PKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILC 535
P+ M SI +L L A N + SL+VT +++V+G+ W++ +++R DY+Y+++
Sbjct: 469 PEHMRSIANSLFPLSFAAANYLSSLLVTTVHKVSGTKDHPDWLNKDLDRGKLDYFYYLIA 528
Query: 536 ILSVVNFFYFIACS--WAYGSCEDIKVWDEGEAMKEHE 571
+L VVN YF C+ + Y + I+ ++E +++ + E
Sbjct: 529 VLGVVNLVYFWYCAHRYQYKAGSQIEDFNEEKSLLDIE 566
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| TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
Identities = 215/553 (38%), Positives = 318/553 (57%)
Query: 10 TKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNF 69
+K K G + PFI+ NE E++A G+ N+I Y E H S A+ + +W
Sbjct: 49 SKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAASDVMIWQGTCYI 108
Query: 70 LPIIGASISDSFLGRFRVIALGTFTAL--LGMILLWLTAIIPAARPPKC-NPFIEICPAA 126
P+IGA I+DS+ GR+ IA +F+A+ +GM LL L+A +P +P C +C A
Sbjct: 109 TPLIGAVIADSYWGRYWTIA--SFSAIYFIGMALLTLSASLPVLKPAACAGVAAALCSPA 166
Query: 127 KPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ-TFFNWYYASVGL 185
Q F+ L+++G GGI+PC +FGADQF + D P ER+ + +FFNW+Y S+ +
Sbjct: 167 TTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTD-PR-ERVRKASFFNWFYFSINI 224
Query: 186 SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVI 245
S TL+V++Q+ GW +GF +P M S F +G+ LY K T QV+
Sbjct: 225 GSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQKPGGSPITRVCQVL 284
Query: 246 SAAWKNRHLPLPPTDADRWYYYK-------GSKLTAPTEKLRFLNRACVVQNREKELDLD 298
AA++ L LP D Y + GS+ T+ +FL++A V+ E +
Sbjct: 285 VAAYRKLKLNLPE-DISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISEYESK---S 340
Query: 299 GKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYT--FPQLQAKSMDRHIFSE 356
G PWKLCTV QVEE+K +I++ PIW+SGI+ +V SQ + F Q Q +SM+R I S
Sbjct: 341 GAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQ-QGRSMNRIIRS- 398
Query: 357 KLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMA 416
+IPP SFGVF L + I + IYDR +VP + +FT P+GL+ QR+GIGL +S +++A
Sbjct: 399 -FEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVLSIA 457
Query: 417 VAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFP 476
AA+VE +R LA + VA++ W +PQ L+G+AE F IG++EF+Y + P
Sbjct: 458 AAAIVE------TVRLQLAQD---FVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDESP 508
Query: 477 KTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCI 536
M S+ AL L AVG+ + SLI+T++ T GGK WV ++N+ H DY++W+L
Sbjct: 509 DAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLLVS 568
Query: 537 LSVVNF-FYFIAC 548
L +VN Y + C
Sbjct: 569 LGLVNIPVYALIC 581
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| TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 203/560 (36%), Positives = 315/560 (56%)
Query: 1 METNTNQEMTKSKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVL 60
++ N N + K K G + PFI+ NE E++A G+ N+I YL + H A +
Sbjct: 30 VDFNGNPPL-KEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNV 88
Query: 61 FLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI 120
W P+IGA ++D++ GR+ IA + +GM L L+A +PA +P +C
Sbjct: 89 TTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAEC--IG 146
Query: 121 EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ-TFFNWY 179
+ CP+A P Q F L+++G GGI+PC +FGADQF + D+ ER+ + +FFNW+
Sbjct: 147 DFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDS--RERVRKASFFNWF 204
Query: 180 YASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFT 239
Y S+ + + S +L+V+IQ+ GW +GFG+P M + F G+ LY K T
Sbjct: 205 YFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQKPGGSPIT 264
Query: 240 GFGQVISAAWKNRHLPLPPTDADRWYYYK-------GSKLTAPTEKLRFLNRACVVQNRE 292
QV+ A+++ + +P DA Y + GS+ T+ ++L++A V+ E
Sbjct: 265 RISQVVVASFRKSSVKVPE-DATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAVISEEE 323
Query: 293 KELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYT--FPQLQAKSMD 350
+ G W+LCTV QVEELK +I++ PIW+SGI+ + +Q + F Q Q ++M+
Sbjct: 324 SK---SGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQ-QGRAMN 379
Query: 351 RHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAI 410
I S ++PP + G F ++ IWV +YDR +VPL KFT +G + QR+GIGL +
Sbjct: 380 CKIGS--FQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFV 437
Query: 411 SCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEF 470
S + MA AA+VE R A GL ++ V ++ +W +PQ ++G AE F IGQ+EF
Sbjct: 438 SVLCMAAAAIVEIIRLHMANDLGLVESG-APVPISVLWQIPQYFILGAAEVFYFIGQLEF 496
Query: 471 YYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYY 530
+Y Q P M S+ AL L A+GN + SLI+T++ T G+ W+S N+N H DY+
Sbjct: 497 FYDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYF 556
Query: 531 YWILCILSVVNF-FYFIACS 549
+W+L LS+VN YF + +
Sbjct: 557 FWLLAGLSLVNMAVYFFSAA 576
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M817 | PTR6_ARATH | No assigned EC number | 0.5221 | 0.9504 | 0.9159 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.XII.1357.1 | hypothetical protein (567 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 585 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 1e-59 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 7e-18 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 4e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-05 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 2e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.001 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 0.001 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 202 bits (516), Expect = 1e-59
Identities = 125/410 (30%), Positives = 185/410 (45%), Gaps = 43/410 (10%)
Query: 85 FRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIG 144
F+ I LG+ +G +LL L AI P+ P Q+ + L+++G
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAI---------------PPSLSPVQVALFYIGLYLIALG 45
Query: 145 AGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWV 204
GGI+P AFGADQF + + FF+W+Y S+ + + + Y+Q G+
Sbjct: 46 TGGIKPNVSAFGADQF----DETQDPRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYP 101
Query: 205 VGFGVPVGLMLFSTVMFLLGSSLYIK--PKANKVLFTGFGQVISAAWKNRHLPLPPTDAD 262
+GFG+P ML + ++FLLGS Y K P +I+AA KNR L LP
Sbjct: 102 LGFGLPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLP--KDS 159
Query: 263 RWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKL-CTVKQVEELKAIIK 321
W Y+ R +++ V + + W L V L+AI+
Sbjct: 160 HWLYW-----ALEKYNKRSISQTKVHTR---VAVIFIPLPKFWALFDQQGSVWLLQAILL 211
Query: 322 VLPIWSSGIMIAVTISQY-TFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIY 380
+LPIW+ I+ +Q T Q +MDR I+ +IPP SF F L + I + I
Sbjct: 212 MLPIWAFWILPDQMWTQLATLIVRQVPTMDRIIYP-LFEIPPASFQSFNPLAVLILLPIL 270
Query: 381 DRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEG 440
D +V PLL RGL+ QR G+G+ I VA +AA+VE KR A GL
Sbjct: 271 DFLVYPLL----RLKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGW- 325
Query: 441 VVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLG 490
V L +W +P+ + G+ A G +EF P +M S+ L +
Sbjct: 326 TVPLFILWSLPELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAA 371
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 7e-18
Identities = 96/418 (22%), Positives = 157/418 (37%), Gaps = 91/418 (21%)
Query: 36 GLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95
G+ ++ YL+ + N+ + + P+IGA I+DS+LG+F+ I +
Sbjct: 5 GMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSLVY 64
Query: 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAF 155
++G L L A+ P L + + + ++G GGI+PC AF
Sbjct: 65 VVGHALASLGAVPSLGHPLH-------------DALSLVGLALI--ALGTGGIKPCVSAF 109
Query: 156 GADQFHNPDNPNNERILQTFFNWYYASVGLSYMAS--ITLIVYIQ--------DKAGWVV 205
G DQF ER L F ++ S T+I I + + +
Sbjct: 110 GGDQF-------EERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPL 162
Query: 206 GFGVPVGLMLFSTVMFLLGSSLYIK--PKANKVLFTGFGQVISAAW-------KNRHLPL 256
FGVP LM + ++F +GS +Y K P N V +V+ + R
Sbjct: 163 AFGVPGILMTLALIVFSMGSKMYKKKPPVGNIV-----SKVMKCIVFALKKRFRTRSEDW 217
Query: 257 PPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEEL 316
P W + AP +R +
Sbjct: 218 PRL---HWLDW-----AAPKYLIRM-------------------------------IRST 238
Query: 317 KAIIKVLPIWSSGIMI-AVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTI 375
K +++VL ++ M A+ Q + LQA MD + I P L + I
Sbjct: 239 KRLLRVLFLFIPLPMFWALFDQQGSRWTLQATRMDGDVGL--FPIQPDQMQAVNPLLVLI 296
Query: 376 WVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREG 433
V I+D VV P L+K R L +++ +G+ ++ +A AVAAL++ K E
Sbjct: 297 LVPIFDYVVYPALAKCGTRFTSL---RKMAVGMLLAALAFAVAALLQNKINPTLPEEP 351
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 4e-17
Identities = 88/561 (15%), Positives = 177/561 (31%), Gaps = 104/561 (18%)
Query: 1 METNTNQEMTKSKKGGL---RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMS---GP 54
M T +E T + R + I E +E+ + G+ A +I YL +
Sbjct: 1 MSLPTEEENTTLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDE 60
Query: 55 EGANVLF-LWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARP 113
A LF +G++ PIIG ++D LG R I LG +G ++L ++++
Sbjct: 61 THATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVS----- 115
Query: 114 PKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173
G L+ L+ +G G +P + + + P ++
Sbjct: 116 ----------------GPGGLYIGLALIIVGTGLFKPNISSLLGELY-----PKDDPRRD 154
Query: 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF------LLGSSL 227
F +Y + + + + + + GW VGFG+ M+ V+F + G
Sbjct: 155 GGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGG 214
Query: 228 YIKP------KANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRF 281
P VL +++A + +
Sbjct: 215 VPDPNPLSFNFLLPVLGGLVVMILAALLTLLLN------QNTFSGVLLVISILIAIIY-- 266
Query: 282 LNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YT 340
+E + ++ +P++ ++ Q +
Sbjct: 267 -----------------FAEAFRSPKVF----DERRRLLAAIPLFLFAVIFWALYEQMGS 305
Query: 341 FPQLQAKSM-DRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLS 399
L A +R IF ++PP F ++ ++ ++ L +K + S
Sbjct: 306 SLNLYADRNVNRQIFG--FEVPPAWFQSLN----PFFIILFSPILAALWTKLGRGNKQPS 359
Query: 400 YRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLA 459
+ +GL ++ + + L + ++ WLV L
Sbjct: 360 TPIKFALGLILAGLGFLILLLAGIWFGGPSGL------------VSVWWLVLSYVLQSFG 407
Query: 460 EAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVS 519
E F + + P + S +A+ L +A G +G V L VT
Sbjct: 408 ELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGG-QVAGLTAVTDPA------- 459
Query: 520 TNVNRAHYDYYYWILCILSVV 540
+ + ++++V
Sbjct: 460 --YTAFIEGRVFGTIGVVAIV 478
|
Length = 498 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 31/191 (16%)
Query: 33 AGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGT 92
GL + + L + +S + ++ + ++ +SD F GR RV+ LG
Sbjct: 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGL 71
Query: 93 FTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCS 152
LG +LL + + L L+ +G G + P +
Sbjct: 72 LLFALGSLLLAFASSLW-----------------------LLLVGRFLLGLGGGALYPAA 108
Query: 153 LAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVG 212
A A+ F P ER + A GL + L + + GW F +
Sbjct: 109 AALIAEWF-----PPKER--GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161
Query: 213 LMLFSTVMFLL 223
L L ++ L
Sbjct: 162 LGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 43/211 (20%), Positives = 86/211 (40%), Gaps = 33/211 (15%)
Query: 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASI 77
R + +++A + +E + G+ A +I YL + + + ++ PI+G +
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 78 SDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSS 137
+D LG + LG +G ++L + I P+ FL+ S
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVLGASEIHPS----------------------FLYLS 106
Query: 138 FVLMSIGAGGIR---PCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194
++ G G + C L + + P +P + F+ YA+ + + +
Sbjct: 107 LAIIVCGYGLFKSNVSCLLG----ELYEPTDPRRD----GGFSLMYAAGNVGSIIAPIAC 158
Query: 195 VYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225
Y Q++ W +GFG+ M+ V+FL G+
Sbjct: 159 GYAQEEYSWAMGFGLAAVGMIAGLVIFLCGN 189
|
Length = 493 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 45/210 (21%), Positives = 65/210 (30%), Gaps = 31/210 (14%)
Query: 41 MIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100
+ YL + +S E +L + + +SD F GR RV+ +G LG++
Sbjct: 19 LPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRF-GRRRVLLIGLLLFALGLL 77
Query: 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQF 160
LL + L L VL +G G + P + A AD F
Sbjct: 78 LLLFAS-----------------------SLWLLLVLRVLQGLGGGALFPAAAALIADWF 114
Query: 161 HNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVM 220
P ER A GL L + GW F + L L + V+
Sbjct: 115 -----PPEERGR--ALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVL 167
Query: 221 FLLGSSLYIKPKANKVLFTGFGQVISAAWK 250
L + AWK
Sbjct: 168 AALLLPRPPPESKRPKPAEEAPAPLVPAWK 197
|
Length = 346 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 28/156 (17%), Positives = 49/156 (31%), Gaps = 27/156 (17%)
Query: 70 LPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPR 129
L +G D G + + LG +LG +L A
Sbjct: 64 LTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFML-----------------------AMSI 100
Query: 130 QLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMA 189
+F +++G+G + + + D P F +Y S+ +
Sbjct: 101 YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP----RRDGGFTLFYMSINIGSFI 156
Query: 190 SITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225
S L I + G+ VGF + M+ + F G
Sbjct: 157 SPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.93 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.92 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.92 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.91 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.91 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.91 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.91 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.91 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.91 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.91 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.9 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.9 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.9 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.9 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.9 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.9 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.9 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.9 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.9 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.89 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.89 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.89 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.89 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.88 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.88 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.88 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.88 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.88 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.88 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.87 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.87 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.87 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.86 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.86 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.86 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.86 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.86 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.86 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.85 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.85 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.85 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.85 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.84 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.84 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.83 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.83 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.82 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.81 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.8 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.8 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.8 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.79 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.79 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.77 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.77 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.75 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.75 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.74 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.74 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.74 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.73 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.72 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.72 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.72 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.71 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.7 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.69 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.68 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.68 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.67 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.66 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.66 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.64 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.64 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.61 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.57 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.46 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.46 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.41 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.38 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.38 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.37 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.37 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.36 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.34 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.34 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.34 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.31 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.31 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.31 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.3 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.29 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.29 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.26 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.26 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.25 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.25 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.24 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.24 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.24 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.24 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.24 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.22 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.21 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.2 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.2 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.19 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.18 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.18 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.17 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.17 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.16 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.16 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.16 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.15 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.12 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.1 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.09 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.08 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.07 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.07 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.06 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.05 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.04 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.04 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.02 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.02 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.02 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.02 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.02 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.01 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.01 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.0 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.96 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.94 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.92 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.91 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.9 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.9 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.89 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.88 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.87 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.87 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.87 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.86 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.86 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.85 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.85 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.84 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.83 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.78 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.76 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.73 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.69 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.68 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.67 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.64 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.63 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.63 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.61 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.59 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.57 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.57 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.55 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.53 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.51 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.5 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.5 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.48 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.43 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.38 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.34 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.33 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.33 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.29 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.28 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.28 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.28 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.27 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.27 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.25 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.23 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.22 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.09 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.99 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.96 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 97.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.94 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.9 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.9 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.88 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.83 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.82 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.7 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.7 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.69 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.65 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 97.6 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.58 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.55 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.36 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.25 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.19 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.0 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.83 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.54 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.52 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.42 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.38 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.08 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.98 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.46 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.33 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.23 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 94.92 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.9 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.77 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 93.45 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 93.45 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 93.4 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 93.21 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 93.08 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 92.27 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 91.92 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.36 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.06 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 90.78 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 90.33 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 89.53 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 88.57 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 87.92 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 86.24 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.7 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 85.52 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 84.18 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 83.79 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 82.05 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=410.49 Aligned_cols=530 Identities=41% Similarity=0.739 Sum_probs=471.0
Q ss_pred cCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHH
Q 007910 13 KKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGT 92 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 92 (585)
++..|+.+..++..+.++++++|++..++..|+++.+|.+...+.-....|.......++.+++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCC---cccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcch
Q 007910 93 FTALLGMILLWLTAIIPAARPPKCNPF---IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNE 169 (585)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 169 (585)
++..+|..++.++..+|.+.++.| .+ ++.|..........++.++.++++|.|+..|+..++.+|+++..++.++
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~- 189 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEV- 189 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchh-
Confidence 999999999999998999998887 22 2346666666778999999999999999999999999999996655555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHH
Q 007910 170 RILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAW 249 (585)
Q Consensus 170 ~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (585)
..+.+.|+|+|+..+.|..++..+..++.++.||.+.|.++.+.+++++++++...+.++.+++.++++..+.+++..+.
T Consensus 190 ~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~ 269 (571)
T KOG1237|consen 190 KGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAA 269 (571)
T ss_pred hCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHH
Confidence 66779999999999999999999999999999999999999999999999999999988888899999999999999999
Q ss_pred hhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 007910 250 KNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSG 329 (585)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (585)
++++...+..+..+....+......+++.++++|++++..+.+. .++....+|+.|+.+.+|+.|.+++.++++.+.
T Consensus 270 ~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~---~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~ 346 (571)
T KOG1237|consen 270 FKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDL---KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTT 346 (571)
T ss_pred HHHhccCCCcchhccccccccccccCCcccchhhHhhccCCccc---ccccccCCccCCCceehhhhhhhhhhhHHHHHH
Confidence 99987776553333111112223344678889999999876433 455556789999999999999999999999999
Q ss_pred HHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHH
Q 007910 330 IMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGL 408 (585)
Q Consensus 330 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~ 408 (585)
+.++..+.| .+++..|...||+..++. +++|++.++.+..+...+..|++|++..|+.+|+++++++++..+++.+|+
T Consensus 347 i~~~~~~aq~~t~~v~Q~~~mdr~~~~~-f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~ 425 (571)
T KOG1237|consen 347 IIYSTVYAQMVTFFVLQATTMDRHLGSN-FKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGL 425 (571)
T ss_pred HHHHHHHHhhhhheehhhhhcCCCCCCC-eEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccc
Confidence 999999999 999999999999988754 899999999999999999999999999999999999877789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHH
Q 007910 409 AISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLS 488 (585)
Q Consensus 409 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~ 488 (585)
++..+++...+..+.+|++.+.. ..+..++++.+|++++++++|++|.+.+++.+++.|+++|++||+.+++++.
T Consensus 426 ~~si~sm~~aa~vE~krl~~~~~-----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l 500 (571)
T KOG1237|consen 426 VLSILSMAVAGIVEAKRLKTAVS-----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWL 500 (571)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhh-----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHH
Confidence 99999999999999999887655 1122357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccccc-cCcccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 489 LGMAVGNLVGSLIVTILNRVTGSGGKVSWVS-TNVNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 489 ~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
+..++|+.++.+++..+...++. ..+|+. +++|.++++++||+++.+..+....+..+.++++-+
T Consensus 501 ~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~ 566 (571)
T KOG1237|consen 501 LTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYK 566 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeec
Confidence 99999999999999998877754 468999 999999999999999999999999988888877654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=349.21 Aligned_cols=462 Identities=17% Similarity=0.261 Sum_probs=351.3
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhC----CChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHH
Q 007910 12 SKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYH----MSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRV 87 (585)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~----~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~ 87 (585)
+.-+|+|.++.++.+|++||++|||+...+..|+..+++ ++++++..+.++|...-+..+++|||+|||++|+||+
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 345789999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCc
Q 007910 88 IALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPN 167 (585)
Q Consensus 88 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 167 (585)
++.|.+++++|.+.++.+. ......++++.+++++|.|+++|+..++++|++|+.|+
T Consensus 95 I~lGail~~iGh~~L~~~~---------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-- 151 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS---------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-- 151 (498)
T ss_pred HHHHHHHHHHHHHHHhccc---------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc--
Confidence 9999999999999998752 01456799999999999999999999999999999776
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCC--c------ch
Q 007910 168 NERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKV--L------FT 239 (585)
Q Consensus 168 ~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~------~~ 239 (585)
+ |..+|+++|++.|+|+.++|.+.+++.+++||+..|..+++.+.++++.+.++++.......... + ..
T Consensus 152 --r-rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 152 --R-RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred --c-cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 3 78899999999999999999999999999999999999999999999998888876543321111 1 11
Q ss_pred hHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhh-hhhhhccccccccccCCCCCCCccccchhhHHHHHH
Q 007910 240 GFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFL-NRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKA 318 (585)
Q Consensus 240 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (585)
....++....... .+... ..+..+.. ...++....-. -.....+ ++.. +++|+
T Consensus 229 ~~~~~~~~~~~~~----------~~~~l-------~~~~~~~~~~~~~i~~~~~~-----~~~~~~~---~~~~-~er~r 282 (498)
T COG3104 229 VLGGLVVMILAAL----------LTLLL-------NQNTFSGVLLVISILIAIIY-----FAEAFRS---PKVF-DERRR 282 (498)
T ss_pred hHHHHHHHHHHHH----------HHHHH-------HHHHHHHHHHHHHHHHHHHH-----HHHHhcc---CccH-HHHHH
Confidence 1111111111100 00000 00000000 00000000000 0000001 1123 78999
Q ss_pred HHHHHHHHHHHHHHHHhhcc--cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCC
Q 007910 319 IIKVLPIWSSGIMIAVTISQ--YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPR 396 (585)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~ 396 (585)
.+..+++++..++||+.+.| +++..+..+..+++..| ++++++++|++|++.++++.|+.+.+.+|+.++. +
T Consensus 283 ~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g--~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~ 356 (498)
T COG3104 283 LLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFG--FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----K 356 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccc--eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----C
Confidence 99999999999999999999 55544445556666455 8899999999999999999999988877766664 3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCC
Q 007910 397 GLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFP 476 (585)
Q Consensus 397 ~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P 476 (585)
+++.+.++..|+++++.+++.+....... + ++ ...++.+|++++++++++||.+++|...+++++.+|
T Consensus 357 ~ps~~~KFalGl~l~g~~fl~l~~~~~~~-------~---~~--~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP 424 (498)
T COG3104 357 QPSTPIKFALGLILAGLGFLILLLAGIWF-------G---GP--SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAP 424 (498)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHhh-------c---CC--CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhCh
Confidence 38999999999999999999988774221 0 00 234688999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007910 477 KTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYG 553 (585)
Q Consensus 477 ~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~ 553 (585)
+.+.+..+|+|.+.+..++.++..+.+.... ++ +..+..++..+|+.++...++..+......++.+
T Consensus 425 ~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~ 491 (498)
T COG3104 425 PALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-TD---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLN 491 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhceecccccc-cc---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999998887663110 00 0112234567788888888777776666655544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=333.45 Aligned_cols=459 Identities=13% Similarity=0.181 Sum_probs=328.7
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
++|||.++.+++++++|+++||+....+..|+++++|+++.+++++.+.+....++..+++|+++||++||||+++++.+
T Consensus 10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~ 89 (489)
T PRK10207 10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAI 89 (489)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999994499999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
++.+++++++++.+ ....++++|+++|+|.|++.|+..++++|++|+++ ++|+
T Consensus 90 ~~~~g~~~~~~~~~----------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~-----~~~~ 142 (489)
T PRK10207 90 VLAIGYFMTGMSLL----------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD-----PRLD 142 (489)
T ss_pred HHHHHHHHHHHhcc----------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc-----hhhh
Confidence 99999999987651 12335689999999999999999999999998843 3457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCcccccc--CCCCCcchhHHHHHH-----
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKP--KANKVLFTGFGQVIS----- 246 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~----- 246 (585)
++++++|++.|+|..+||.+++++.++.|||+.|+++.+.++++++.+.+.++.+++. ++++++.+ ..+.+.
T Consensus 143 ~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~~~~~ 221 (489)
T PRK10207 143 GAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMS-FSKLLLVLLGS 221 (489)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchh-hhhHHHHHHHH
Confidence 7899999999999999999999999999999999997766666655555555443322 22222221 111100
Q ss_pred ----HHHhhcCCCCCCCcccccccccCCCcCCCCchhhhh-hhhhhccccccccccCCCCCCCccccchhhHHHHHHHHH
Q 007910 247 ----AAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFL-NRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIK 321 (585)
Q Consensus 247 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (585)
........ .. . ..... ....+.... .-.++..+.+ ..++++.+.
T Consensus 222 ~~~~~~~~~~~~-~~-~------------------~~~~~~~~~~~i~~~----------~f~~~~~~~~-~~~r~r~~~ 270 (489)
T PRK10207 222 VVMIFVCAWLMH-NV-E------------------VANLVLIVLSIVVTI----------IFFREAFKLD-KTGRNKMFV 270 (489)
T ss_pred HHHHHHHHHHHh-hh-h------------------HHHHHHHHHHHHHHH----------HHHHHHhcCC-HHHHHHHHH
Confidence 00000000 00 0 00000 000000000 0000000111 123445555
Q ss_pred HHHHHHHHHHHHHhhcc--cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCC
Q 007910 322 VLPIWSSGIMIAVTISQ--YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLS 399 (585)
Q Consensus 322 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~ 399 (585)
.+.++....++|..+.| ..+.++.....+....| +.+++.+++++|++.+++..|+.+ ++.+|+++|+..++
T Consensus 271 ~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G--~~i~~~~~~~~n~~~iii~~pl~~----~l~~rl~~r~~~~~ 344 (489)
T PRK10207 271 AFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILG--FSINPVSFQALNPFWVVVASPILA----GIYTHLGSKGKDLS 344 (489)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccc--eEECHHHHHhHhHHHHHHHHHHHH----HHHHHHhhCCCCCC
Confidence 66667778889999999 33333333345555545 778899999999999999999965 45667766655588
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcch
Q 007910 400 YRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTM 479 (585)
Q Consensus 400 ~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 479 (585)
+..++.+|+++.+++++.+...... . .+. ....+.+++++.+++.++||.+.+|..++++++.+|+++
T Consensus 345 ~~~k~~~G~~l~~~~~~~~~~~~~~-----~----~~~---~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~ 412 (489)
T PRK10207 345 MPMKFTLGMFLCSLGFLTAAAAGMW-----F----ADA---QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHL 412 (489)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHh-----h----cCC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHH
Confidence 9999999999999887765433210 0 000 013567889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 480 SSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 480 rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
+|.++|++++..++|+.+|..+...+.. .. ...++. ..+++|..+|..++++.++..++++++.++.++.
T Consensus 413 ~g~~~g~~~l~~~ig~~lg~~l~~~~~~-~~-~~~~~~----~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~ 482 (489)
T PRK10207 413 MGFILGMWFLTQAAAFLLGGYVATFTAV-PD-NITDPL----ETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRM 482 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc-ccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988766431 00 000010 0123467888888888888888777777666543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=323.61 Aligned_cols=466 Identities=15% Similarity=0.174 Sum_probs=327.3
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
.+|+|.++.++.+++++++++|++...++.|+++++|+++.+++.+.+.+.+..+++++++|+++||++||||+++++.+
T Consensus 5 ~~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~i 84 (493)
T PRK15462 5 ASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGAL 84 (493)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999996699999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+..++.+++.... .+...++++..+..+|.|...++.+++++|++|+++ ++|+
T Consensus 85 l~~lg~lll~~~~----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~-----~~R~ 137 (493)
T PRK15462 85 LMAIGHVVLGASE----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD-----PRRD 137 (493)
T ss_pred HHHHHHHHHHHhh----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC-----cccc
Confidence 9999987665422 012335556666778888889999999999999843 3678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCC-CCCcchh--HHHH------
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKA-NKVLFTG--FGQV------ 244 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~------ 244 (585)
++++++|...|+|+.++|.+++++.++.||++.|.++++.++++++.++..++.+.+..+ .+++.++ ....
T Consensus 138 sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (493)
T PRK15462 138 GGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLL 217 (493)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHH
Confidence 899999999999999999999999999999999999877777766666555544322111 1111110 0000
Q ss_pred HHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhh-hhhccccccccccCCCCCCCccccchhhHHHHHHHHHHH
Q 007910 245 ISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNR-ACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVL 323 (585)
Q Consensus 245 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (585)
+....... .... . . .++.....-. .++.... --.+......+.+|+|++...+
T Consensus 218 ~~~~~~~~----------~~~~-~----~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~er~r~~~~~ 271 (493)
T PRK15462 218 VLLVATPA----------LITV-L----F-WKEWSVYALIVATIIGLG----------VLAKIYRKAENQKQRKELGLIV 271 (493)
T ss_pred HHHHHHHH----------HHHH-H----H-HHHHHHHHHHHHHHHHHH----------HHHHHHHhcCCHHHHhhHHHHH
Confidence 00000000 0000 0 0 0000000000 0000000 0000000012346788888899
Q ss_pred HHHHHHHHHHHhhcc--cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCch
Q 007910 324 PIWSSGIMIAVTISQ--YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYR 401 (585)
Q Consensus 324 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~ 401 (585)
.+++..++||+.|.| +++.++...++|++++| +++|++++|++|++.++++.|+...+ ..|+.+|++.++..
T Consensus 272 ~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g--~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~~~~~s~~ 345 (493)
T PRK15462 272 TLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFG--YTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAGNRTVRIW 345 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcc--eeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcCCCCCCcH
Confidence 999999999999999 66667777789988877 89999999999999999999997653 34443333347899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhh
Q 007910 402 QRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSS 481 (585)
Q Consensus 402 ~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 481 (585)
.|+..|+++++++++++...... . + ++ ..++.+|++..++++++||.+.+|..++.+.+.+|++.+|
T Consensus 346 ~Kfa~g~~~~g~~f~~l~~~~~~----~------~-~~--~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g 412 (493)
T PRK15462 346 GKFALGLGLMSAGFCILTLSARW----S------A-MY--GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTG 412 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh----c------C-CC--CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHH
Confidence 99999999999999888765411 0 0 11 1368888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHH--HHHHHHHhcccCcc
Q 007910 482 IGVALLSLGM-AVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVN--FFYFIACSWAYGSC 555 (585)
Q Consensus 482 ~~~g~~~~~~-~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~--~~~~~~~~~~~~~~ 555 (585)
+.+|++.+.. .+|+.++..+......... .+-...+-...+|..+|..++.+.++. ++.+....+..|.|
T Consensus 413 ~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (493)
T PRK15462 413 VLTGIYMLLSGAIANYLAGVIADQTSQASF----DASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKFR 485 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccC----CccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998744 6888888777665421100 000000001124677888887766655 33334444444433
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=324.97 Aligned_cols=452 Identities=13% Similarity=0.177 Sum_probs=328.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHH--hCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILE--YHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALG 91 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~ 91 (585)
.+++|..+.+++.++++++++|++.++++.|++++ +|++..+++++.+.+.+...++++++|+++||++||||+++++
T Consensus 6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 46788899999999999999999999999999988 9999999999999999999999999999999944999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhh
Q 007910 92 TFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERI 171 (585)
Q Consensus 92 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (585)
.++.+++.++++++. +.+.++++|.+.|+|.|+..|+..++++|++|++++ ++
T Consensus 86 ~~~~~~g~~~~~~~~-----------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~----~~ 138 (475)
T TIGR00924 86 GIVLMLGHFMLAMSI-----------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDM----PR 138 (475)
T ss_pred HHHHHHHHHHHHhcc-----------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCc----cc
Confidence 999999998888754 556788899999999999999999999999998543 35
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchh----HHH----
Q 007910 172 LQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTG----FGQ---- 243 (585)
Q Consensus 172 r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~---- 243 (585)
|+++++++|++.|+|.++||.+++++.++.||++.|+++++.++++.+.+++.++.+++.++++++.++ ..+
T Consensus 139 r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 139 RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLA 218 (475)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHH
Confidence 788999999999999999999999999989999999998876666665555555443322211111110 000
Q ss_pred ---HHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHH
Q 007910 244 ---VISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAII 320 (585)
Q Consensus 244 ---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (585)
.+....+............ ........++.+...+. . .. +.....++++..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~----~---~~-----~~~~~~~~~~~~ 272 (475)
T TIGR00924 219 LLAALALVFFCAWLMHHVVIAN--------------ILLMTVTLAVIIFFFRL----A---FK-----PRLDAVARNKMY 272 (475)
T ss_pred HHHHHHHHHHHHHHHhccHHHH--------------HHHHHHHHHHHHHHHHH----H---Hh-----ccCCHHHHhHHH
Confidence 0000000000000000000 00000000001000000 0 00 000112234444
Q ss_pred HHHHHHHHHHHHHHhhcc--cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCC
Q 007910 321 KVLPIWSSGIMIAVTISQ--YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGL 398 (585)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~ 398 (585)
..+.+++...++|+.+.| +++.+++...++...++ +++++++++++|++.+++..|+.+.+ ..|+++|.+.+
T Consensus 273 ~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~--~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~~~ 346 (475)
T TIGR00924 273 AYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLG--MSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGKDP 346 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccc--eEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCCCC
Confidence 577888888999999999 55666666667777665 78899999999999999999997653 33444433336
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcc
Q 007910 399 SYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKT 478 (585)
Q Consensus 399 ~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~ 478 (585)
+...++.+|+++.++++..++.... .. ++ ....+++|+++++++.++||.+..|..++++++.+|++
T Consensus 347 ~~~~k~~~G~~l~~~~~~~~~~~~~----~~------~~---~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~ 413 (475)
T TIGR00924 347 TTPLKFTLGMLFCGASFLTFAASIW----FA------DA---GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR 413 (475)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh----hc------CC---CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH
Confidence 7777899999999999888776531 10 00 12468889999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007910 479 MSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYG 553 (585)
Q Consensus 479 ~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~ 553 (585)
.||+++|++.+...+|+.+++.+.+..... .++..+|..++.+.++..++++...++.+
T Consensus 414 ~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 414 LMGQMLGMWFLAQAMGSLLGGYLATFGAVP----------------QGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887764321 12356677777777777777677666554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=313.90 Aligned_cols=459 Identities=17% Similarity=0.211 Sum_probs=323.6
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
.+++|.++.++++++++++++|++..+++.|+++++|+++.+++++.+.+....+...+++|+++||++|||++++++.+
T Consensus 17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~ 96 (500)
T PRK09584 17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAI 96 (500)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 36678899999999999999999999999999999999999999999888888888888999999993399999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+++++..++.++. .+.+.++++|+++|+|.|...++..++++|++|+++ ++|+
T Consensus 97 ~~~ig~~l~~~~~----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~-----~~~~ 149 (500)
T PRK09584 97 VLAIGYALVAWSG----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD-----PRLD 149 (500)
T ss_pred HHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc-----hhhh
Confidence 9999988887753 134567788999999999999999999999998732 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCcccccc--CCCCCcchhH------HHHH
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKP--KANKVLFTGF------GQVI 245 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~i 245 (585)
++++++|++.|+|..+||.+++++.++.|||+.|++.++..+++++.+++.++..++. ++++++.+.. ...+
T Consensus 150 ~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (500)
T PRK09584 150 GAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVV 229 (500)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHH
Confidence 6789999999999999999999999999999999998876666655544444333222 1221222111 0011
Q ss_pred HHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHH
Q 007910 246 SAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPI 325 (585)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (585)
........ .+.+.+ .....-.......... .++.....+..++++.+..+.+
T Consensus 230 ~~~~~~~~---------~~~~~~------~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 281 (500)
T PRK09584 230 ALIAIATW---------LLHNQE------IARMALGVVALGIVVI-------------FGKEAFAMKGAARRKMIVAFIL 281 (500)
T ss_pred HHHHHHHH---------HHhcch------HHHHHHHHHHHHHHHH-------------HHHHHhhcCHHHHHHHHHHHHH
Confidence 11110000 000000 0000000000000000 0000000112345566666777
Q ss_pred HHHHHHHHHhhcc-cchhhhhh-cccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHH
Q 007910 326 WSSGIMIAVTISQ-YTFPQLQA-KSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQR 403 (585)
Q Consensus 326 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~ 403 (585)
++..+++|+.+.| ++....+. ...+....+ +.+++++++++|++.+++..|+.+. +.+|+++| .+..++
T Consensus 282 ~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g--~~i~~~~~~s~n~i~iil~~p~~~~----~~~~l~~r---~~~~~~ 352 (500)
T PRK09584 282 MLEAIIFFVLYSQMPTSLNFFAIRNVEHSILG--IAVEPEQYQALNPFWIMIGSPILAA----IYNKMGDR---LPMPHK 352 (500)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccccccc--eEECHHHHHHHhHHHHHHHHHHHHH----HHHHhCcC---CCcHHH
Confidence 7888999999999 55544443 335555545 6788999999999999999999765 34566666 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHH
Q 007910 404 IGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIG 483 (585)
Q Consensus 404 ~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~ 483 (585)
+.+|+++++++++.+..... ..+++ ..++.+++++.+++.++||++.+|..++++++.+|+++||++
T Consensus 353 ~~~G~~l~~l~f~~l~~~~~----~~~~~---------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~ 419 (500)
T PRK09584 353 FAIGMVLCSGAFLVLPLGAK----FANDA---------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFI 419 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCC---------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHH
Confidence 99999999999998776541 11111 246777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 484 VALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 484 ~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
+|++.+...+|+.++..+...+.. ......+. ...++|..+|..+++++++..++.+...++.++.
T Consensus 420 ~g~~~l~~a~g~~~~g~~~~~~~~--~~~~~~~~----~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~ 485 (500)
T PRK09584 420 MGSWFLTTAGAALIAGYVANLMAV--PDNVTDPL----MSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRM 485 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--ccccccch----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888764321 00000000 0112467888888888777776666666665543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-28 Score=265.98 Aligned_cols=332 Identities=25% Similarity=0.442 Sum_probs=271.2
Q ss_pred HHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007910 32 VAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAA 111 (585)
Q Consensus 32 ~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~ 111 (585)
++|||+...+..|+.+.+|++++++..+.+.+....++.++++|+++|+++||+|++.++.++..+|..++.++. .|..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a-~~~~ 79 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGA-IPSS 79 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc-Cccc
Confidence 478999999999999999999999999999999999999999999999999999999999999999998888754 2210
Q ss_pred CCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH
Q 007910 112 RPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASI 191 (585)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 191 (585)
. ...+....+++..++++|.|++.|+..++.+|+++++++ ++|.++|+++|+++|+|+++++
T Consensus 80 ~--------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~----~~~~s~F~~fY~~iNiGSlis~ 141 (654)
T TIGR00926 80 G--------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL----SLRSRFFSFFYFAINAGSLIST 141 (654)
T ss_pred c--------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch----hHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011345577889999999999999999999999986432 5689999999999999999999
Q ss_pred HHHHHhhccc-------chhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCccccc
Q 007910 192 TLIVYIQDKA-------GWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRW 264 (585)
Q Consensus 192 ~~~~~l~~~~-------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 264 (585)
.+.+++.++. +|...|.+++++++++++++...++.++..++.+++...+.+++..+.+++....++.
T Consensus 142 ~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~~----- 216 (654)
T TIGR00926 142 IITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSEH----- 216 (654)
T ss_pred HHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCcc-----
Confidence 9999998543 6999999999999999888888887776666666666667777777776543221110
Q ss_pred ccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhh
Q 007910 265 YYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTFPQ 343 (585)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 343 (585)
.+.+|.|++.... ..+.++++|++++.+.+++...++|..+.| .+.+.
T Consensus 217 ------------~~~~~ld~a~~~~-------------------~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~ 265 (654)
T TIGR00926 217 ------------WPLHWLDYAKDKH-------------------DIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWT 265 (654)
T ss_pred ------------cchhHHHHhcccc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 1133444432211 224578889999999999999999999999 77768
Q ss_pred hhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007910 344 LQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVER 423 (585)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~ 423 (585)
.|...++...++ +.+++.+++.+|++.++++.|+++..++|..+|.+.+ +++.+++.+|+++.++++++++..+.
T Consensus 266 ~qa~~m~~~l~g--~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~ 340 (654)
T TIGR00926 266 LQATRMDGDVGG--FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQL 340 (654)
T ss_pred HHHHHhcCccCC--EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777655 7789999999999999999999998888888887655 78999999999999999988887653
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-24 Score=225.30 Aligned_cols=376 Identities=11% Similarity=0.004 Sum_probs=248.2
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
.+.++....+++..++..++.......++.|+.+++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~ 89 (399)
T PRK05122 11 LRLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLC 89 (399)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHH
Confidence 34456677777788888888888888899999999999999999999999999999999999999997 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+..++.+.+.++..... ....+...+++.|+++|++.+...+...+++.|.+|+ ++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~ 147 (399)
T PRK05122 90 GCALSGLLYLLAGLLAA---------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGA-------LHTG 147 (399)
T ss_pred HHHHHHHHHHHhhhhhc---------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcCh-------hhhc
Confidence 88887766655331100 0011466789999999999999999999999999988 7788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcC
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRH 253 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (585)
+.++++..+.++|..+|+.+++++.+.+||+..+++..+..++..... ++ .++.++++++
T Consensus 148 ~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~---------------- 207 (399)
T PRK05122 148 RVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RP-RPAVPPVKGE---------------- 207 (399)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hc-CCCCCCCCcc----------------
Confidence 999999999999999999999999998999998876555433322221 11 1110000000
Q ss_pred CCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHH-HHHHHHHHH
Q 007910 254 LPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVL-PIWSSGIMI 332 (585)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 332 (585)
+.+ + .+..|+..... ........+
T Consensus 208 ------------------------~~~------------------------~-------~~~~~~~~~~~~~~~~~~~~~ 232 (399)
T PRK05122 208 ------------------------RLP------------------------F-------RRVLGRVWPYGMGLALASIGF 232 (399)
T ss_pred ------------------------chh------------------------H-------HHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00001111110 111111111
Q ss_pred HHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHH
Q 007910 333 AVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAIS 411 (585)
Q Consensus 333 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~ 411 (585)
...... +.+ .. ..+.+ ..+.......+..++...+ ..++.+|.++| +.+..+..+.
T Consensus 233 ~~~~~~~~~~-~~-~~~~~----------~~~~~~~~~~~~~~~~~~~----~g~l~~r~~~~-------~~~~~~~~~~ 289 (399)
T PRK05122 233 GTIATFITLY-YA-ARGWD----------GAALALTLFGVAFVGARLL----FGNLINRLGGL-------RVAIVSLLVE 289 (399)
T ss_pred HHHHHHHHHH-HH-Hcccc----------cchHHHHHHHHHHHHHHHH----HHHHHHHhccH-------HHHHHHHHHH
Confidence 111111 111 11 11110 0111111222233333233 34455665544 5666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHH
Q 007910 412 CVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGM 491 (585)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~ 491 (585)
++++....... +.+.+++..++.|++.....+.......+..|++.||+++|+++...
T Consensus 290 ~~~~~~~~~~~----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 347 (399)
T PRK05122 290 ILGLLLLWLAP----------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFL 347 (399)
T ss_pred HHHHHHHHHhc----------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 66665544322 33345566788899888888888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 007910 492 AVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIAC 548 (585)
Q Consensus 492 ~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~ 548 (585)
.+|..+++.+.+.+.+.. +++..|++.+++.+++++..+..
T Consensus 348 ~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 348 DLSLGITGPLAGLVASWF----------------GYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred HHHHHHHHHHHHHHHHHc----------------CHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888765432 25677888887777776665544
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=221.88 Aligned_cols=373 Identities=10% Similarity=0.042 Sum_probs=242.1
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
++|...+.+.+..++.....|. ...+...+.+++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||++..+.++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~ 83 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFV-PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL 83 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHH-HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 3444455555555554444443 33334567889999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
..++.+.+.++. +++.+++.|+++|++.+...+...+++.|.+|+ ++|++
T Consensus 84 ~~~~~~~~~~~~-----------------------~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~ 133 (390)
T PRK03545 84 FIASHVLSALAW-----------------------NFTVLLISRIGIAFAHAIFWSITASLAIRVAPA-------GKKAQ 133 (390)
T ss_pred HHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-------hhhhh
Confidence 999998888866 788899999999999999999999999999998 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCC
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHL 254 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (585)
.++++..+.++|..++|.+++.+.+..|||+.|++.+++.++.....+...++.+ ++++ .+ .+..
T Consensus 134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~----~~~~-~~-~~~~--------- 198 (390)
T PRK03545 134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP----SEHS-GS-LKSL--------- 198 (390)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCc-ch-HHHH---------
Confidence 9999999999999999999999999899999999877766555444333222211 0000 00 0000
Q ss_pred CCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHH-HHHHHHHHH
Q 007910 255 PLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLP-IWSSGIMIA 333 (585)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 333 (585)
... .++ +.+..... .+......+
T Consensus 199 ------------------------------~~~-------------------------~~~-~~~~~~~~~~~~~~~~~~ 222 (390)
T PRK03545 199 ------------------------------PLL-------------------------FRR-PALVSLYLLTVVVVTAHF 222 (390)
T ss_pred ------------------------------HHH-------------------------HhC-cHHHHHHHHHHHHHHHHH
Confidence 000 000 01111111 111111111
Q ss_pred Hhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHH
Q 007910 334 VTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISC 412 (585)
Q Consensus 334 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~ 412 (585)
..+.. +.+ .....+++... .+.+.....+..++...+ ..++.+|.++| .+.++..+..
T Consensus 223 ~~~~~~~~~-l~~~~g~s~~~--------~~~~~~~~~~~~~~g~~~----~g~l~dr~~~~--------~~~~~~~~~~ 281 (390)
T PRK03545 223 TAYSYIEPF-VQQVAGLSENF--------ATLLLLLFGGAGIIGSVL----FSRLGNRHPSG--------FLLIAIALLL 281 (390)
T ss_pred HHHHHHHHH-HHHhcCCCccH--------HHHHHHHHHHHHHHHHHH----HHHHhhccchh--------HHHHHHHHHH
Confidence 11111 211 11111111110 112222223333333333 33444554332 3444555444
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHH
Q 007910 413 VAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMA 492 (585)
Q Consensus 413 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 492 (585)
++........ .+...+++..++.|++.....+....++.+..| +.|++++|+++....
T Consensus 282 ~~~~~l~~~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~ 339 (390)
T PRK03545 282 VCLLLLLPAA---------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFN 339 (390)
T ss_pred HHHHHHHHHh---------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 4443332222 133445566778888888778888888888877 588999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007910 493 VGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACS 549 (585)
Q Consensus 493 ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~ 549 (585)
+|..+|+.+.+.+.+.. +++..|++.+.+.+++++..+...
T Consensus 340 ~g~~~G~~~~G~~~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 340 IGIGAGALLGNQVSLHL----------------GLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHhcc----------------ChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999998876443 256778888888888887766554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=221.94 Aligned_cols=175 Identities=15% Similarity=0.064 Sum_probs=148.5
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
+++|....+.++..+++.+..+...... ..+.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 88 (406)
T PRK11551 11 SRLALTIGLCFLVALLEGLDLQSAGVAA-PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVA 88 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHH
Confidence 3556666666677777777666654444 455678999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+..++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|+
T Consensus 89 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~ 138 (406)
T PRK11551 89 LFGLFSLATAQAW-----------------------DFPSLLVARLLTGVGLGGALPNLIALTSEAVGP-------RLRG 138 (406)
T ss_pred HHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCH-------HHHH
Confidence 8888887777655 678899999999999999999999999999998 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (585)
+.+++.+.+.++|..+++.+++.+.+..+|++.|++.+++.++..++
T Consensus 139 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK11551 139 TAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL 185 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888889999998876554444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-23 Score=226.27 Aligned_cols=398 Identities=14% Similarity=0.065 Sum_probs=241.1
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
|..+..+++..++..+....+...++ .+.+++|.+..+.+|+.+.+.++..++.++.|+++||+ |||++++.+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 34445555566666655555545444 45788999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++.+++++++ +.+.++++|+++|+|.++..|.....+.+.++++ ++|++++
T Consensus 83 ~~~~~~~~a~-----------------------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~------~~r~~~~ 133 (495)
T PRK14995 83 LASLAAAFSP-----------------------TASWLIATRALLAIGAAMIVPATLAGIRATFTEE------KQRNMAL 133 (495)
T ss_pred HHHHHHHHcC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHH
Confidence 9999999876 7888999999999999999988888887877432 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHH--------HHHH
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQV--------ISAA 248 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------i~~~ 248 (585)
+++....++|..+||.+++++.+++|||+.|++...+.++.+++.....++.++++ .++.+..... +...
T Consensus 134 g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~ 211 (495)
T PRK14995 134 GVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYS 211 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887766665555444444322111 1111111110 0111
Q ss_pred HhhcCCCCCCCcccccccccCCCcCCCCchhhhh-hhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHH
Q 007910 249 WKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFL-NRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWS 327 (585)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (585)
.++..... .+........ ..... -...+..+ . . ...+..+++.++. |.+........
T Consensus 212 ~~~~~~~~-~~~~~~~~~~----------~~~~~~l~~f~~~e--~--~-~~~p~~~~~lf~~------~~~~~~~~~~~ 269 (495)
T PRK14995 212 AKTALKGF-LSLWVTSLTL----------LTGALLLGLFIRTQ--L--A-ASRPMIDMRLFTH------RIILSGVVMAM 269 (495)
T ss_pred HHhccccC-CchHHHHHHH----------HHHHHHHHHHHHHH--h--c-CCCCCcCHHHhCC------cccHHHHHHHH
Confidence 11110000 0000000000 00000 00000000 0 0 0000011111111 11111111111
Q ss_pred HHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHH
Q 007910 328 SGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGI 406 (585)
Q Consensus 328 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~ 406 (585)
.....+..+.. .+.++....+.+.. ..+.......+...+..++ ..++.+|+++| +.+..
T Consensus 270 ~~~~~~~~~~~~~~~~lq~v~g~s~~--------~ag~~~~~~~~~~~~~~~~----~g~l~~r~g~~-------~~~~~ 330 (495)
T PRK14995 270 TAMITLVGFELLMAQELQFVHGLSPL--------EAGMFMLPVMVASGFSGPI----AGILVSRLGLR-------LVATG 330 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHH--------HHHHHHHHHHHHHHHHHHH----HHHHHHHcCch-------HHHHH
Confidence 11111111111 11111111111111 1122222223333444443 44566776655 56677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHH
Q 007910 407 GLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVAL 486 (585)
Q Consensus 407 g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~ 486 (585)
|+.+.+++...+.... ...+.+......++.|+|.+...++....+.+..|++.++.+.++
T Consensus 331 g~~~~~~~~~~l~~~~-------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~ 391 (495)
T PRK14995 331 GMALSALSFYGLAMTD-------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAI 391 (495)
T ss_pred HHHHHHHHHHHHHHhc-------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHH
Confidence 7777777765554332 011333345567888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007910 487 LSLGMAVGNLVGSLIVTILNR 507 (585)
Q Consensus 487 ~~~~~~ig~~ig~~l~~~i~~ 507 (585)
++...++|+.+|+.+.+.+..
T Consensus 392 ~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 392 ETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888753
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-23 Score=223.99 Aligned_cols=178 Identities=10% Similarity=0.029 Sum_probs=152.6
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+..+.+++..++..+..+.+...++.+. +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||+++.+.+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~ 87 (471)
T PRK10504 10 WQLWIVAFGFFMQSLDTTIVNTALPSMA-QSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHH
Confidence 3466667777787888887777777765 56999999999999999999999999999999996 999999999999888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+.+++.++. +.+.+++.|+++|++.+...|...+++.|.+|+ ++|+++++
T Consensus 88 ~~~~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 137 (471)
T PRK10504 88 GSLFCALSG-----------------------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPR-------EQYMAAMT 137 (471)
T ss_pred HHHHHHHhC-----------------------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 888777654 677889999999999999999999999999998 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCcc
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSL 227 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (585)
......++|..+||.+++++.++.|||+.|++......+..++.....++
T Consensus 138 ~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 138 FVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999998776666555555444443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-23 Score=218.25 Aligned_cols=373 Identities=12% Similarity=0.047 Sum_probs=241.8
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
.+..+.+.+..++..++.+...+.++.|+.+++|+|..+.+++.+.+.+...++.++.|+++||+ ||||+++.+.+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (392)
T PRK12382 14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACG 92 (392)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHH
Confidence 34555666677777777777778888899999999999999999999999999999999999996 99999999888777
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++.+........+. ....+++.++++|+++|++.+...+...+++.|.+|+ ++|++++
T Consensus 93 ~~~~~~~~~~~~~~---------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~a~ 150 (392)
T PRK12382 93 LAGLAYLLAAILPV---------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGP-------KHSGKVM 150 (392)
T ss_pred HHHHHHHhhhcccc---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc-------cccchhh
Confidence 66544333211111 0012678899999999999999889888999999998 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCC
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPL 256 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (585)
++++.+.++|..++|.+++++.+..||++.+.+..+..++.. .+.+ +.++.+++++..
T Consensus 151 ~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~------------------ 208 (392)
T PRK12382 151 SWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNG-TVRKVPAHAGER------------------ 208 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHH-hccCCCCCcccC------------------
Confidence 999999999999999999999888899987665443322221 1111 111100000000
Q ss_pred CCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHH-HHHHHHHHHHHHHh
Q 007910 257 PPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIK-VLPIWSSGIMIAVT 335 (585)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 335 (585)
+ ++ .+..|.+.. ..........+...
T Consensus 209 --------------------~--------------------------~~-------~~~~~~~~~~~~~~~l~~~~~~~~ 235 (392)
T PRK12382 209 --------------------P--------------------------SL-------WSVVGLIWKPGLGLALQGVGFAVI 235 (392)
T ss_pred --------------------c--------------------------hH-------HHHHHHHHHhHHHHHHHHHHHhHH
Confidence 0 00 000010100 00111111111111
Q ss_pred hcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHH
Q 007910 336 ISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVA 414 (585)
Q Consensus 336 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~ 414 (585)
... +.+ ..+ .+.+ ..+.......+..++..++ ..++.+|+++| +.+..+..+.+++
T Consensus 236 ~~~~~~~-~~~-~~~~----------~~~~~~~~~~~~~~~~~~~----~g~l~~r~g~~-------~~~~~~~~~~~~~ 292 (392)
T PRK12382 236 GTFVSLY-FAS-KGWA----------MAGFTLTAFGGAFVLMRVL----FGWMPDRFGGV-------KVAIVSLLVETVG 292 (392)
T ss_pred HHHHHHH-HHh-cCCc----------hhHHHHHHHHHHHHHHHHH----HHHHHHhcCCC-------eehHHHHHHHHHH
Confidence 111 111 111 1110 0111112222233333333 34455666555 5566666666666
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHH
Q 007910 415 MAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVG 494 (585)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig 494 (585)
++...... +.....+..++.+++.+...+.......+.+|++.||++.|+++....+|
T Consensus 293 ~~~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g 350 (392)
T PRK12382 293 LLLLWLAP----------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIA 350 (392)
T ss_pred HHHHHHcc----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 55544322 33345556778888888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 007910 495 NLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIAC 548 (585)
Q Consensus 495 ~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~ 548 (585)
+.+++.+.+.+.+.. +|+..|.+.+++.+++.++.+..
T Consensus 351 ~~ig~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 351 YGVSGPLAGMLATSF----------------GYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHhh
Confidence 999999998876443 24677888888877777665543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=219.93 Aligned_cols=176 Identities=15% Similarity=0.135 Sum_probs=153.9
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
+.+|..+.++...++...+++.+.++++.|+++++|+++.+.+++.+.+.+...++.++.|+++||+ |||++++++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3456677777888999999999999999999999999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
..++.+++.+.+ +.+.+++.|.+.|.+.+...++..++..|.+|+ ++|++
T Consensus 83 ~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~ 132 (395)
T PRK10054 83 FASGFIAIPLVN-----------------------NVTLVVLFFALINCAYSVFSTVLKAWFADNLSS-------TSKTK 132 (395)
T ss_pred HHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------hHHHH
Confidence 888888887765 667777888888888788888899999999998 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
++++.+...++|..+||.+++++.+ .+|+..|++.+++.++..++..
T Consensus 133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~ 179 (395)
T PRK10054 133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQ 179 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 7899999987776666544443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-23 Score=217.42 Aligned_cols=346 Identities=14% Similarity=0.106 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
++++..+++..++.+.+.+.++.|+.+++|+|..+.+.+.+.+.+...+..+++|+++||+ |||+++.++.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6667888999999999999999999999999999999999999999999999999999996 999999999999999998
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
++.+.+ +.+.+++.|++.|++.+...|...+++.|.+|+ ++|++++++.+
T Consensus 92 ~~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~ 141 (400)
T PRK11646 92 TMAIAH-----------------------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRP-------HQRGRFFSLLM 141 (400)
T ss_pred HHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHH
Confidence 887755 677889999999999998889999999999998 88999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCc
Q 007910 181 ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTD 260 (585)
Q Consensus 181 ~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 260 (585)
...++|..+||.+++++. .+||++.|++.++..++..++.....++.+. ++..+ +..
T Consensus 142 ~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-~~~~~---~~~------------------ 198 (400)
T PRK11646 142 MQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-STVRT---PVR------------------ 198 (400)
T ss_pred HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-cccch---hhH------------------
Confidence 999999999999999998 6799999998776655544333332221100 00000 000
Q ss_pred ccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-c
Q 007910 261 ADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-Y 339 (585)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 339 (585)
+ .++ +..++ +.+...... ...++....+ .
T Consensus 199 ----------------~--------------------------~~~----~~~~~-~~~~~~~~~---~~~~~~~~~~~~ 228 (400)
T PRK11646 199 ----------------E--------------------------GMT----RVLRD-KRFVTYVLT---LTGYYMLAVQVM 228 (400)
T ss_pred ----------------H--------------------------HHH----HHHcC-chHHHHHHH---HHHHHHHHHHHH
Confidence 0 000 00000 111111111 1111111111 1
Q ss_pred c-hhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHH
Q 007910 340 T-FPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVA 418 (585)
Q Consensus 340 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~ 418 (585)
. .+.+. ....+. ....+.....+.+........ ..+..+| | .+..+.+..++.+.+++++.+
T Consensus 229 ~~~p~~~----~~~~~~---~~~~g~l~~~~~~~~~~~~~~----~~~~~~~---r---~~~~~~~~~~~~~~~~~~~~l 291 (400)
T PRK11646 229 LMLPIMV----NDIAGS---PSAVKWMYAIEACLSLTLLYP----IARWSEK---R---FRLEHRLMAGLLIMSLSMFPI 291 (400)
T ss_pred HhhhhhH----HhhcCC---chHHHHHHHHHHHHHHHHHHH----HHHHHHH---h---cchhHHHHHHHHHHHHHHHHH
Confidence 0 11110 011100 001111222222222221111 1222222 2 233355667777777776655
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHH
Q 007910 419 ALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVG 498 (585)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig 498 (585)
+... +...++...++.++++....|...+++.+.+|++.||+++|++++...+|..+|
T Consensus 292 ~~~~----------------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig 349 (400)
T PRK11646 292 GMVS----------------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIG 349 (400)
T ss_pred HHhh----------------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhc
Confidence 5433 233344455677888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 007910 499 SLIVTILNRVT 509 (585)
Q Consensus 499 ~~l~~~i~~~~ 509 (585)
+.+.+.+.+.+
T Consensus 350 ~~l~G~l~~~~ 360 (400)
T PRK11646 350 YIGGGWLFDLG 360 (400)
T ss_pred ccchHHHHHHH
Confidence 99999887654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-23 Score=218.10 Aligned_cols=384 Identities=13% Similarity=-0.010 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMIL 101 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~ 101 (585)
.++..+++..++.......++.+ .++++.++.+.+++.+.+.+...++.++.|+++||+ |||+++..+.++.+++...
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~~ 98 (417)
T PRK10489 21 AVFIARFISIFGLGLLGVAVPVQ-IQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFIG 98 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHHH
Confidence 33444555555555455555555 456788999999999999999999999999999996 9999999988888777766
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
..+..... ..+++.+++.|++.|++.+...+...+++.|.+|+ ++|+++.++.+.
T Consensus 99 ~~~~~~~~------------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 153 (417)
T PRK10489 99 LALNAFLP------------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGR-------ENLMQAGAITML 153 (417)
T ss_pred HHHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCH-------HHHHHHHHHHHH
Confidence 54321000 11567788999999999988888889999999998 788999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcc
Q 007910 182 SVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDA 261 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 261 (585)
..++|..+||.+++++.+..+|++.|++.++..++..++.+..++. ++++++...
T Consensus 154 ~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~--------------------- 208 (417)
T PRK10489 154 TVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPAL----PPPPQPREH--------------------- 208 (417)
T ss_pred HHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCC----CCCCccccc---------------------
Confidence 9999999999999999888899999988766655554443332211 010000000
Q ss_pred cccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Q 007910 262 DRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YT 340 (585)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (585)
+..+..+. + +.....+.+........+.......... +.
T Consensus 209 ---------------~~~~~~~~--------------------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 248 (417)
T PRK10489 209 ---------------PLRSLLAG--------------------F-----RFLLASPVVGGIALLGGLLTMASAVRVLYPA 248 (417)
T ss_pred ---------------chHHHHHH--------------------H-----HHHHcChHHHHHHHHHHHHHHHHhHHHhhHH
Confidence 00000000 0 0000001111111111111111111111 11
Q ss_pred hhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 007910 341 FPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAAL 420 (585)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~ 420 (585)
+ ..+..+.+.. ..+.+.....+..++...+.. ++.+|. ++.+.+..+.++.++++..+..
T Consensus 249 ~-~~~~~g~~~~--------~~g~~~~~~~~g~~ig~~~~~----~l~~~~-------~~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T PRK10489 249 L-ADEVWQMGAA--------QIGLLYAAVPLGAALGALTSG----WLAHSA-------RPGLLMLLSTLGSFLAVGLFGL 308 (417)
T ss_pred H-HHhccCCChh--------HhHHHHHHHHHHHHHHHHHHH----Hhhhcc-------CcchHHHHHHHHHHHHHHHHHc
Confidence 1 1111111111 122223333334444433322 223332 2224556666666666554433
Q ss_pred HHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 007910 421 VERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSL 500 (585)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~ 500 (585)
.. ++.......++.+++.+...+...+++.+..|++.||+++|+++....+|..+|+.
T Consensus 309 ~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~ 366 (417)
T PRK10489 309 MP----------------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAA 366 (417)
T ss_pred cc----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHH
Confidence 22 33445556677788887777777888889999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 501 IVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 501 l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
+.+.+.+..+ +...++..++..++..++.+...++++++
T Consensus 367 l~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (417)
T PRK10489 367 LLGGLGAMMT----------------PVASASASGFGLLIIGVLLLLVLGELRRF 405 (417)
T ss_pred HHHHHHHHhc----------------hhhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9998775433 23456666665555555555555666655
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-22 Score=223.83 Aligned_cols=157 Identities=11% Similarity=0.067 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007910 37 LHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKC 116 (585)
Q Consensus 37 ~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 116 (585)
....+..++.+++|++..+.+++.+++.++..++.+++|+++||+ |||++++++.++++++.++++++.
T Consensus 185 ~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~---------- 253 (742)
T TIGR01299 185 VVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQ---------- 253 (742)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 345566777889999999999999999999999999999999996 999999999999999998888766
Q ss_pred CCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 117 NPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVY 196 (585)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 196 (585)
+++.++++|++.|+|.|+..++..++++|.+|+ +.|++.+++...+..+|.++++.++.+
T Consensus 254 -------------s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~-------~~Rg~~~g~~~~~~~iG~ila~~la~~ 313 (742)
T TIGR01299 254 -------------GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQ-------EKRGEHLSWLCMFWMIGGIYAAAMAWA 313 (742)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999 899999999999999999999887766
Q ss_pred hhcc-------------cchhHHHHHHHHHHHHHHHHHHHh
Q 007910 197 IQDK-------------AGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 197 l~~~-------------~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
+... .+||+.|++.++..++.+++.++.
T Consensus 314 il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l 354 (742)
T TIGR01299 314 IIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM 354 (742)
T ss_pred HHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc
Confidence 5532 358898888777666655554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=216.14 Aligned_cols=382 Identities=11% Similarity=0.051 Sum_probs=242.0
Q ss_pred CCcch-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhh-----HHHHHHHHHHHHHHHhhHhHHhhhcccCchHHH
Q 007910 15 GGLRT-MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPE-----GANVLFLWGAISNFLPIIGASISDSFLGRFRVI 88 (585)
Q Consensus 15 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~-----~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l 88 (585)
.+|+. ....+...++..++++.....++.|+ +++|++..+ .+++.+++.+...++.++.|+++||+ |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~ 87 (408)
T PRK09874 10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYV-EQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIML 87 (408)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHH
Confidence 34444 44455677777777777777788887 458888665 37888899999999999999999996 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcc
Q 007910 89 ALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNN 168 (585)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 168 (585)
+.+.++..++.+++.+.. +.+.+++.|++.|++.+ ..+...+++.|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~------ 137 (408)
T PRK09874 88 LRSALGMGIVMVLMGLAQ-----------------------NIWQFLILRALLGLLGG-FVPNANALIATQVPR------ 137 (408)
T ss_pred HHHHHHHHHHHHHHHHHh-----------------------hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCH------
Confidence 999998888888777655 67889999999999865 457778889999988
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHH
Q 007910 169 ERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAA 248 (585)
Q Consensus 169 ~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 248 (585)
++|++..++...+.++|..++|.+++.+.+..+|++.|++.+++.++..+..+...++... +.+++...
T Consensus 138 -~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-------- 206 (408)
T PRK09874 138 -NKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVSKKEML-------- 206 (408)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhhh--------
Confidence 7889999999999999999999999999988899999988777665554444333322110 00000000
Q ss_pred HhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHH
Q 007910 249 WKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSS 328 (585)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (585)
+..+..... + +.+.....+..
T Consensus 207 -------------------------------~~~~~~~~~--------------------~-----~~~~~~~~~~~--- 227 (408)
T PRK09874 207 -------------------------------HMREVVTSL--------------------K-----NPKLVLSLFVT--- 227 (408)
T ss_pred -------------------------------HHHHHHHhC--------------------c-----CCchHHHHHHH---
Confidence 000000000 0 00001111111
Q ss_pred HHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHH
Q 007910 329 GIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIG 407 (585)
Q Consensus 329 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g 407 (585)
.......... .+....+.......... .....+.+.....+..++..++ ..++.+|+++| +.+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~l~~~~~~~~----~g~l~dr~g~~-------~~~~~~ 294 (408)
T PRK09874 228 TLIIQVATGSIAPILTLYVRELAGNVSN--IAFISGMIASVPGVAALLSAPR----LGKLGDRIGPE-------KILITA 294 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHhccccc-------hhHHHH
Confidence 1111111111 11111000000000000 0000111112222333333333 33456666555 556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHH
Q 007910 408 LAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL 487 (585)
Q Consensus 408 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 487 (585)
+.+..++++...... +.+.+.+..++.+++.+...+...+.+.+..|++.+|+.++++
T Consensus 295 ~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 352 (408)
T PRK09874 295 LIFSVLLLIPMSFVQ----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYN 352 (408)
T ss_pred HHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHH
Confidence 665555544433222 2334555667789999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007910 488 SLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACS 549 (585)
Q Consensus 488 ~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~ 549 (585)
+....+|..+|+.+.+.+.+.. +|+..|.+.+++.+++.+..+...
T Consensus 353 ~~~~~~g~~~gp~~~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 353 QSFRDIGNVTGPLMGAAISANY----------------GFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred HHHHHHHHHhhHHHHHHHHhhc----------------chhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765332 356778888888888777655544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-23 Score=222.12 Aligned_cols=154 Identities=11% Similarity=0.062 Sum_probs=124.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCCCCCCcccCCCCCc
Q 007910 50 HMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAII-PAARPPKCNPFIEICPAAKP 128 (585)
Q Consensus 50 ~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 128 (585)
|.++.+.+++.+++.++..+++++.|+++||+ ||||+++++.+++.++.+..++.... .....+ ..
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~------------~~ 117 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFTSIGPD------------NT 117 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhcccccccccc------------ch
Confidence 88999999999999999999999999999996 99999999999999888777653200 000000 01
Q ss_pred chhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--------cc
Q 007910 129 RQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ--------DK 200 (585)
Q Consensus 129 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~--------~~ 200 (585)
.....++++|+++|++.|...+...++++|++|+ ++|++++++...+..+|.++++.++..+. +.
T Consensus 118 ~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~-------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPA-------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred hHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCCh-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 1356788999999999999999999999999999 88999999999999999999887766543 35
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 007910 201 AGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 201 ~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
.|||+.|++.++..++..+..++
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred CChHHHHHHHHHHHHHHHHHHHc
Confidence 68999999877666555444433
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-21 Score=201.66 Aligned_cols=376 Identities=10% Similarity=0.028 Sum_probs=253.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHH
Q 007910 13 KKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGT 92 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 92 (585)
++..|..++.+.+..|.....=+.. ..+..-+.+++|+|..++|+.+++|.++..++.|+-..+.||+ .||++++...
T Consensus 8 ~~~~~~~l~aLa~~~F~igttEfv~-~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l 85 (394)
T COG2814 8 RKPMWLALLALALAAFAIGTTEFVP-VGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLL 85 (394)
T ss_pred cccchHHHHHHHHHHHHHHhHHHHH-HhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHH
Confidence 3455666666666666555444444 4455667899999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 93 FTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
++++++.++++++. |++.++++|++.|+..|.+++...++..+..|+ ++|
T Consensus 86 ~lFi~~n~l~alAp-----------------------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp-------~~~ 135 (394)
T COG2814 86 ALFIVSNLLSALAP-----------------------SFAVLLLARALAGLAHGVFWSIAAALAARLVPP-------GKR 135 (394)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cch
Confidence 99999999999988 899999999999999999999999999999999 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCC-CcchhHHHHHHHHHhh
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANK-VLFTGFGQVISAAWKN 251 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~ 251 (585)
+++.+....+..++.++|..++.++.|.+|||..|+..+.+.++.++..+...| .++.+++. .+..+..+
T Consensus 136 ~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~-------- 206 (394)
T COG2814 136 GRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLR-------- 206 (394)
T ss_pred hhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHH--------
Confidence 999999999999999999999999999999999999888877777776666555 00111100 00000000
Q ss_pred cCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHH
Q 007910 252 RHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIM 331 (585)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (585)
.+++ .+.........+....
T Consensus 207 -------------------------------------------------------~l~~-----p~v~~~l~~t~l~~~g 226 (394)
T COG2814 207 -------------------------------------------------------LLRR-----PGVLLGLLATFLFMTG 226 (394)
T ss_pred -------------------------------------------------------HhcC-----chHHHHHHHHHHHHcc
Confidence 0000 0111111222222333
Q ss_pred HHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHH
Q 007910 332 IAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAI 410 (585)
Q Consensus 332 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l 410 (585)
.+..|.+ ..+ +.+..+++.. ..++.-....+..+++..+ ..++.|| + .++.+...+.+
T Consensus 227 ~F~~ftYi~P~-L~~v~g~s~~--------~vs~~Ll~~Gv~~~~Gn~~----gGrl~dr-~-------~~~~l~~~~~l 285 (394)
T COG2814 227 HFALYTYIRPF-LESVAGFSVS--------AVSLVLLAFGIAGFIGNLL----GGRLADR-G-------PRRALIAALLL 285 (394)
T ss_pred hhhhHHhHHHH-HHHccCCCHh--------HHHHHHHHHHHHHHHHHHH----Hhhhccc-c-------chhHHHHHHHH
Confidence 3344444 222 2222222211 1223333444444554444 3344454 2 22555566566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCC--cchhhHHHHHHH
Q 007910 411 SCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFP--KTMSSIGVALLS 488 (585)
Q Consensus 411 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P--~~~rg~~~g~~~ 488 (585)
+++.++.+.+.. .+....+...++.+++ ..+..+.+..+.++ ++.++.+.+++.
T Consensus 286 ~a~~~l~l~~~~---------------------~~~~~~~~~~~~wg~a---~~~~~~~~~~~~a~~~p~~~~~a~sl~~ 341 (394)
T COG2814 286 LALALLALTFTG---------------------ASPALALALLFLWGFA---FSPALQGLQTRLARLAPDAADLAGSLNV 341 (394)
T ss_pred HHHHHHHHHHhc---------------------chHHHHHHHHHHHHHH---hhhhhhHHHHHhcccCCCchHHHHHHHH
Confidence 666666554433 1223333333443443 34455555555544 578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 007910 489 LGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSW 550 (585)
Q Consensus 489 ~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~ 550 (585)
...++|..+|..+.+.+.+.. +|....++.+.+.+.+++..+...+
T Consensus 342 aa~nlgia~GA~lGG~v~~~~----------------g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 342 AAFNLGIALGAALGGLVLDAL----------------GYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999877543 3567788888888887776555444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=218.20 Aligned_cols=152 Identities=21% Similarity=0.135 Sum_probs=127.7
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q 007910 41 MIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI 120 (585)
Q Consensus 41 ~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 120 (585)
....+.+++|++..+.+++.+.+.+...++.++.|+++||+ |||++++.+.++..++.++++++.
T Consensus 41 ~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~-------------- 105 (455)
T TIGR00892 41 FFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS-------------- 105 (455)
T ss_pred hHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh--------------
Confidence 33455788999999999999999999999999999999996 999999999999999888887765
Q ss_pred ccCCCCCcchhHHHHH-HHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 121 EICPAAKPRQLGFLFS-SFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQD 199 (585)
Q Consensus 121 ~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 199 (585)
+.+.+++ .|++.|++.+...+...+++.+.++ ++|+++.++.+.+.++|..++|.+++++.+
T Consensus 106 ---------~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~--------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~ 168 (455)
T TIGR00892 106 ---------NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY--------RRRPLANGLAMAGSPVFLSTLAPLNQYLFE 168 (455)
T ss_pred ---------hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH--------hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 5555654 5688999998876777788888884 568999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 200 KAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 200 ~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
.+|||+.|++.+++.++..++.++.
T Consensus 169 ~~gwr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 169 SFGWRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999887666554444433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-22 Score=210.42 Aligned_cols=368 Identities=12% Similarity=0.015 Sum_probs=233.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLT 105 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~ 105 (585)
+....+..++.+.. +...+.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++++++.++++++
T Consensus 17 ~~~~~~~~~~~~~~-~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a 94 (393)
T PRK09705 17 IGLNMRPLLTSVGP-LLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY 94 (393)
T ss_pred HHHHcchhhhccch-hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC
Confidence 33333444444444 44556789999999999999999999999999999999997 99999999999999999999987
Q ss_pred hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007910 106 AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185 (585)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 185 (585)
+ +++.++++|+++|+|.+...+..+.++.+.+| ++|++.++.+..+.+.
T Consensus 95 ~-----------------------~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~~~~~ 143 (393)
T PRK09705 95 P-----------------------QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ--------QRTPLVMGLWSAALMG 143 (393)
T ss_pred c-----------------------chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc--------ccchhHHHHHHHHHHH
Confidence 7 67789999999999999999999999999886 3468899999999999
Q ss_pred HHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCccccc
Q 007910 186 SYMASITLIVYIQDKA-GWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRW 264 (585)
Q Consensus 186 g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 264 (585)
|..+|+.+++++.++. +||..+.+.++..++.....+...++ ++++++ + ++.
T Consensus 144 g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------~----~~~----- 196 (393)
T PRK09705 144 GGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAR----EVASSH--------------K----TTT----- 196 (393)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcC----CCcccc--------------C----CCc-----
Confidence 9999999999988765 89988766544433333322222111 111000 0 000
Q ss_pred ccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhh
Q 007910 265 YYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTFPQ 343 (585)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 343 (585)
+. ...+ . +.+.+...+........++....+ +.+ +
T Consensus 197 ------------~~-----------------------~~~l---~-----~~~~~~l~~~~~~~~~~~~~~~~~lp~~-l 232 (393)
T PRK09705 197 ------------TP-----------------------VRVV---F-----TPRAWTLGVYFGLINGGYASLIAWLPAF-Y 232 (393)
T ss_pred ------------CC-----------------------cccc---c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 00 0000 0 001111111111111222222222 333 1
Q ss_pred hhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007910 344 LQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVER 423 (585)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~ 423 (585)
.+ .+.+.. ..+.......+..++...+ ..++.+|.++| +.+.+++.+.+++...+....
T Consensus 233 ~~-~g~s~~--------~ag~~~~~~~i~~i~g~~~----~g~l~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~- 291 (393)
T PRK09705 233 IE-IGASAQ--------YSGSLLALMTLGQAAGALL----MPAMARHQDRR-------KLLMLALVLQLVGFCGFIWLP- 291 (393)
T ss_pred HH-cCCChh--------hhhHHHHHHHHHHHHHHHH----HHHHHhhccch-------HHHHHHHHHHHHHHHHHHHcc-
Confidence 11 122111 1222333333444444443 34555665544 566667666666655443222
Q ss_pred HHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcC-CcchhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 424 KRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF-PKTMSSIGVALLSLGMAVGNLVGSLIV 502 (585)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~g~~~~~~~ig~~ig~~l~ 502 (585)
. +.... ..++.+++.+...|.......+.. |++.+|+.+|+.+....++..+++.+.
T Consensus 292 -------------------~-~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~ 349 (393)
T PRK09705 292 -------------------L-QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFS 349 (393)
T ss_pred -------------------c-hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111 123456676677777776666776 468899999999999999999999999
Q ss_pred HHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 503 TILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 503 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
+.+.+..| +|...|.+.++..++..+..+.+.+|++.+
T Consensus 350 G~l~~~~g---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 350 GVLRSISG---------------NYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHHHHhC---------------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 98876553 235567777777777777767776666554
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-22 Score=207.09 Aligned_cols=155 Identities=12% Similarity=-0.002 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007910 37 LHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKC 116 (585)
Q Consensus 37 ~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 116 (585)
........+.+++|+|+.+.+++.+.+.+++.++.++.|+++||+ |||++++.+.+....+.. .....
T Consensus 9 ~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~---------- 76 (368)
T TIGR00903 9 TFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP---------- 76 (368)
T ss_pred HHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh----------
Confidence 345556667889999999999999999999999999999999997 999987765555544432 22221
Q ss_pred CCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 117 NPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVY 196 (585)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 196 (585)
.++..+++.|+++|+|.+. .+.....++|++|+ ++|++++++.+.+.++|..+++.++++
T Consensus 77 ------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~-------~~r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 77 ------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIRE-------ERRDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred ------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1678899999999999986 45556667999998 899999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 197 IQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+.+++|||+.|++.+++.++..+++++
T Consensus 137 l~~~~gWr~~f~~~~~l~~~~~~~~~~ 163 (368)
T TIGR00903 137 IYTAGGLQLLIIPIAAVAAAGIILVLA 163 (368)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998866655544444433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-21 Score=209.08 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=136.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLT 105 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~ 105 (585)
.+++..+....+.+.++. +.+++|.++.+.++..+.+.++..++.++.|+++||+ ||||+++.+.++..++.++...+
T Consensus 21 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~ 98 (406)
T PRK15402 21 FEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLA 98 (406)
T ss_pred HHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443 5678999999999999999999999999999999996 99999999999998888887775
Q ss_pred hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007910 106 AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185 (585)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 185 (585)
. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|.+..++......+
T Consensus 99 ~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~ 148 (406)
T PRK15402 99 Q-----------------------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEE-------ADAIKITALMANVALL 148 (406)
T ss_pred c-----------------------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhCh-------hHHHHHHHHHHHHHHH
Confidence 5 677889999999999999888899999999998 7788888888888889
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 186 SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 186 g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
|..++|.+++++.++.+|++.|++.++..++..+..+
T Consensus 149 ~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~ 185 (406)
T PRK15402 149 APLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLW 185 (406)
T ss_pred HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999887766665554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=211.35 Aligned_cols=164 Identities=12% Similarity=0.067 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMIL 101 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~ 101 (585)
..++..++..+..+.....+ ..+.+++|+|..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAM-PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhh-HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHH
Confidence 33334444333334443444 444667999999999999999999999999999999996 9999999999999999988
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
+.++. +++.+++.|++.|++.|...+...+++.|++|+ ++|++.+++++.
T Consensus 105 ~~~~~-----------------------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~-------~~rg~~~~~~~~ 154 (434)
T PRK11663 105 FGFSS-----------------------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSR-------TERGGWWAIWNT 154 (434)
T ss_pred HHHHh-----------------------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence 88766 678888999999999999999999999999998 889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 007910 182 SVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~ 217 (585)
+.++|..++|.+++++.+.+|||+.|++.++..++.
T Consensus 155 ~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 155 AHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 999999999999999999899999998876655443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-22 Score=206.13 Aligned_cols=357 Identities=11% Similarity=0.003 Sum_probs=230.5
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
++...++..++.......++.|.. +++.++.+.+++.+++.++..++.++.|+++||+ ||||+++.+.++..++.++.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 345566666666666666777764 5799999999999999999999999999999996 99999999998888887777
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
.+....+ ..+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+..
T Consensus 82 ~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 136 (365)
T TIGR00900 82 PFVALLG------------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPE-------EQLTQANSLSQAV 136 (365)
T ss_pred HHHHHcC------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHHHHHhHHHHH
Confidence 6654111 12678899999999999999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCccc
Q 007910 183 VGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDAD 262 (585)
Q Consensus 183 ~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 262 (585)
.++|..+||.+++++.+..||++.|++.++..++..+..+..+.+... ++++++.+.
T Consensus 137 ~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------------------- 193 (365)
T TIGR00900 137 RSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELA-ASEIQALSN---------------------- 193 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCC-Cccccccch----------------------
Confidence 999999999999999988999999988766555554444333221100 000000000
Q ss_pred ccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHH-HHHHHHHhhcc-cc
Q 007910 263 RWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWS-SGIMIAVTISQ-YT 340 (585)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~ 340 (585)
+...+..+ .+ +.....+.+........ ........... .+
T Consensus 194 -------------~~~~~~~~--------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (365)
T TIGR00900 194 -------------AVLRDTRE--------------------GI-----KFVLKNPLLRTLLLLALLFNLVFAPAIVALFP 235 (365)
T ss_pred -------------hHHHHHHh--------------------HH-----HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 00000000 00 00000011111111111 11111111111 11
Q ss_pred hhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 007910 341 FPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAAL 420 (585)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~ 420 (585)
.+..+..+.+.. ..+.......+..++...+. .++.+|.+++ +.+..+..+.+++++....
T Consensus 236 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 296 (365)
T TIGR00900 236 YVQSKYLGRGST--------HYGWVLAAFGLGALLGALLL----GLLGRYFKRM-------ALMTGAIFVIGLAILVVGL 296 (365)
T ss_pred HHHHHHhCCchH--------HHHHHHHHHHHHHHHHHHHH----HHHHHHhchh-------HHHHHHHHHHHHHHHHHHh
Confidence 211111111111 11222233333344443332 3344554443 5566666666666555443
Q ss_pred HHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHH
Q 007910 421 VERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSL 500 (585)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~ 500 (585)
.. + +.+.+.+..++.+++.....+....+..+..|++.||+++|+.+....++..+++.
T Consensus 297 ~~--------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 355 (365)
T TIGR00900 297 TP--------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI 355 (365)
T ss_pred hc--------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 1 24456667788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 007910 501 IVTILNR 507 (585)
Q Consensus 501 l~~~i~~ 507 (585)
+.+.+.+
T Consensus 356 ~~g~l~~ 362 (365)
T TIGR00900 356 LAGPLAD 362 (365)
T ss_pred HHHHHHH
Confidence 9887654
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-21 Score=206.69 Aligned_cols=175 Identities=10% Similarity=0.115 Sum_probs=148.6
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHH
Q 007910 12 SKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALG 91 (585)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~ 91 (585)
..++.|+....+....++.....|.....++. +.+++|+++.+.++..+++.++..++.++.|+++||+ ||||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~ 91 (394)
T PRK10213 14 ITRPNWSAVFSVAFCVACLIIVEFLPVSLLTP-MAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILF 91 (394)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHH
Confidence 34556776666555555555555555554444 5678999999999999999999999999999999996 999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhh
Q 007910 92 TFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERI 171 (585)
Q Consensus 92 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (585)
.++.+++.+++.+++ +++.+++.|+++|++.+...+...+++.|++|+ ++
T Consensus 92 ~~~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~-------~~ 141 (394)
T PRK10213 92 AVLLTLSCLLVSFAN-----------------------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPP-------RT 141 (394)
T ss_pred HHHHHHHHHHHHHHC-----------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCH-------hH
Confidence 999999988887765 788999999999999999999999999999998 88
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 007910 172 LQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFST 218 (585)
Q Consensus 172 r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~ 218 (585)
|+++.++...+.++|..++|.+++++.+.+|||+.|++.+++.++..
T Consensus 142 ~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 142 VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765554433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=215.19 Aligned_cols=183 Identities=13% Similarity=0.045 Sum_probs=135.9
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILE-----YHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIAL 90 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~ 90 (585)
+++.+.+..+..+++.+....+....+ .+..+ .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.+
T Consensus 14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~ 91 (502)
T TIGR00887 14 HFRAIVIAGVGFFTDSYDLFCISLVTK-MLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence 334444444455555444433333233 33332 245566778999999999999999999999996 99999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchh
Q 007910 91 GTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNER 170 (585)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 170 (585)
+.+++.++.++++++.+.. ...+...++++|++.|++.|+..+..+.+++|.+|+ +
T Consensus 92 ~~~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~-------~ 147 (502)
T TIGR00887 92 ELIIMIIATVASGLSPGSS-----------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATK-------K 147 (502)
T ss_pred HHHHHHHHHHHHHHccCcc-----------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCh-------h
Confidence 9999999988887754100 001367899999999999999999999999999999 8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----------------------ccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 171 ILQTFFNWYYASVGLSYMASITLIVYIQD-----------------------KAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 171 ~r~~~~~~~~~~~~ig~~~g~~~~~~l~~-----------------------~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
+|+++.++.+....+|..+++.++.++.. +.+||+.|.+.++..++..+..++.
T Consensus 148 ~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~l 224 (502)
T TIGR00887 148 WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTI 224 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888765432 2479999988776666554444333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=218.68 Aligned_cols=157 Identities=13% Similarity=0.051 Sum_probs=128.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 007910 40 NMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF 119 (585)
Q Consensus 40 ~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 119 (585)
.....+.+++|++..+.+++.+++.+++.++.+++|+++||+ |||+++..+.++..++.++.++...
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------------ 116 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLG------------ 116 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHh------------
Confidence 345567889999999999999999999999999999999997 9999999888887777766654210
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 120 IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQD 199 (585)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 199 (585)
....+.+.+++.|++.|++.+...|...++++|++|+ ++|+++++++..+.++|.++++.+..++.+
T Consensus 117 ------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 117 ------SGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPR-------RKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred ------cccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCc-------cceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 0012788899999999999999999999999999999 888999999999999999999988877665
Q ss_pred cc---chhHHHHHHHHHHHHHHHHHH
Q 007910 200 KA---GWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 200 ~~---g~~~~f~~~~~~~~i~~~~~~ 222 (585)
.. +|+..|.+.+++.++..+..+
T Consensus 184 ~~~~~~~~~~f~~~g~~~~~~~i~~~ 209 (467)
T PRK09556 184 YFFDGHVIGMFIFPSIIALIIGFIGL 209 (467)
T ss_pred hhccCcchhHHHHHHHHHHHHHHHHH
Confidence 43 588888776655544433333
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-21 Score=213.12 Aligned_cols=176 Identities=13% Similarity=0.088 Sum_probs=129.7
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhh-HHH-----HHHHHHHHHHHHhhHhHHhhhcccCchHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPE-GAN-----VLFLWGAISNFLPIIGASISDSFLGRFRVIAL 90 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~-~~~-----i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~ 90 (585)
++......+..+++.+.+. +..+...++.++++.+..+ ..+ +.++..++..+++++.|+++||+ |||+++.+
T Consensus 15 ~~~~~~~~~g~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~ 92 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFG-VYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI 92 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence 3445555566677665544 3456667888888644322 122 24666788889999999999997 99999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchh
Q 007910 91 GTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNER 170 (585)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 170 (585)
+.+++.++.++++++.+..++. ......+++.|+++|+|.|+..+...++++|++|+ +
T Consensus 93 ~~~l~~i~~~~~a~~~~~~~~g---------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~-------~ 150 (490)
T PRK10642 93 TIVIMSISTFCIGLIPSYATIG---------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPD-------R 150 (490)
T ss_pred HHHHHHHHHHHHHhcccHHHHH---------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCC-------C
Confidence 9999999999999876211100 00012488999999999999999999999999999 7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHH
Q 007910 171 ILQTFFNWYYASVGLSYMASITLIVYIQ--------DKAGWVVGFGVPVGLMLF 216 (585)
Q Consensus 171 ~r~~~~~~~~~~~~ig~~~g~~~~~~l~--------~~~g~~~~f~~~~~~~~i 216 (585)
+|++..++...+..+|..+|+.+...+. .++|||+.|++.++..++
T Consensus 151 ~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 151 KRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 7888888888888888888876654432 257999999987654443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-22 Score=207.58 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
+....++.+++|+++.+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++..++.++.
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 80 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAG------------ 80 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHc------------
Confidence 3444567889999999999999999999999999999999996 999999999999999998888766
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.....++|..++|.+++++.
T Consensus 81 -----------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 142 (399)
T TIGR00893 81 -----------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPA-------SERATAVSIFNSAQGLGGIIGGPLVGWIL 142 (399)
T ss_pred -----------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCH-------HHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999 89999999999999999999999999998
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 007910 199 DKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 199 ~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+..+|++.|++.++..++..++.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLK 167 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhh
Confidence 8899999998877665555444433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=210.51 Aligned_cols=169 Identities=13% Similarity=0.165 Sum_probs=145.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHH
Q 007910 13 KKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGT 92 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 92 (585)
++.+|+......+..+.+.+..+.. .++..++.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~ 90 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSI 90 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHH
Confidence 3445555555556666665555543 4555677889999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 93 FTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
++.+++.+++.++. +.+.+++.|++.|+|.+...+...+++.|.+|+ ++|
T Consensus 91 ~~~~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~-------~~r 140 (426)
T PRK12307 91 VAYSVGTGLSGLAS-----------------------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPK-------HLK 140 (426)
T ss_pred HHHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCH-------hHh
Confidence 99999998888876 788899999999999999999999999999999 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGL 213 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~ 213 (585)
+++.+++..+.++|.++++.+.+.+.+..+||+.|++.+..
T Consensus 141 ~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 141 SKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred hHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 99999999999999999999999998889999999875443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-22 Score=211.01 Aligned_cols=176 Identities=15% Similarity=0.039 Sum_probs=145.8
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
+|+..+.+++..+++......+ ......+.+++|+++.+.+++.+++.++..++.++.|+++||+ |||+++..+.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 4554444444444433333333 4455688999999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.++..++++++ +.+.+++.|+++|++.+...|...+++.|++|+ ++|++.
T Consensus 84 ~~~~~~~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~rg~~ 133 (412)
T TIGR02332 84 GIASTATMFAT-----------------------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPA-------YFRARA 133 (412)
T ss_pred HHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCH-------HHHHHH
Confidence 99999998876 678899999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHH
Q 007910 176 FNWYYASVGLSYMASITLIVYIQD------KAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~------~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
.++++.+.++|..+++.+++++.+ ..|||+.|++.++..++..++.++
T Consensus 134 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 134 NALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998864 369999999877665554444433
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=214.42 Aligned_cols=168 Identities=10% Similarity=0.115 Sum_probs=145.7
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
+.+|+....+++..++..+..+... .+..++.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~ 93 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLIT-LVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence 4455656666666666666665554 455667789999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+.+++.+++.++. +++.+++.|++.|++.+...+...+++.|.+|+ ++|+
T Consensus 94 ~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~ 143 (496)
T PRK03893 94 LFSVGTLACGFAP-----------------------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPK-------HLRN 143 (496)
T ss_pred HHHHHHHHHHHHh-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHH
Confidence 9999998888765 778899999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGL 213 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~ 213 (585)
+.+++++.+.++|..++|.+.+++.+.++||+.|++.++.
T Consensus 144 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~ 183 (496)
T PRK03893 144 KASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP 183 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=207.59 Aligned_cols=153 Identities=18% Similarity=0.096 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007910 38 HANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCN 117 (585)
Q Consensus 38 ~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 117 (585)
.+.+..++.+++|+++.+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+++.++.
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~----------- 89 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIAD----------- 89 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHH-----------
Confidence 34567788899999999999999999999999999999999996 999999999999999999888876
Q ss_pred CCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 118 PFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYI 197 (585)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 197 (585)
+.+.+++.|++.|++.+...+.....+.+++|+ +|++..+++..+.++|..+++.+.+.+
T Consensus 90 ------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~ 149 (377)
T TIGR00890 90 ------------SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD--------KRGLASGIIIGGYGLGSFILSPLITSV 149 (377)
T ss_pred ------------HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc--------ccHHHHHHHHHhcchhHhHHHHHHHHH
Confidence 788899999999999998888888888888864 478889999999999988766676777
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHH
Q 007910 198 QDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
.+..|||+.|++.++..++..+..+
T Consensus 150 ~~~~~~~~~f~~~~~~~~~~~~~~~ 174 (377)
T TIGR00890 150 INLEGVPAAFIYMGIIFLLVIVLGA 174 (377)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHH
Confidence 7778999999987776655544443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-22 Score=215.01 Aligned_cols=389 Identities=14% Similarity=0.107 Sum_probs=238.0
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
..+++..++..+..... ......+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.+++.++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 5 IVLMLGTFMAVLDSTIV-NVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHHH
Confidence 33444555554544433 4445566788999999999999999999999999999999996 999999999999999998
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
++.++. +.+.+++.|+++|++.+...+...+++.|.+|+ ++|++++++++
T Consensus 83 ~~~~~~-----------------------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~ 132 (485)
T TIGR00711 83 LCGVAP-----------------------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPP-------EKRGRAMAIWG 132 (485)
T ss_pred HHhCcC-----------------------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCH-------HHHHHHHHHHH
Confidence 888765 678899999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHH--------HHHHhhc
Q 007910 181 ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVI--------SAAWKNR 252 (585)
Q Consensus 181 ~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------~~~~~~~ 252 (585)
....+|..+||.+++++.++.+||+.|++.+.+.++..++.++..++.++ ..++..+.....+ .....+.
T Consensus 133 ~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~ 210 (485)
T TIGR00711 133 LTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEG 210 (485)
T ss_pred HHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998776665555544443332111 1111111111000 0001110
Q ss_pred CCCCCCCcccccccccCCCcCCCCchhhhh--hh-----hhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHH
Q 007910 253 HLPLPPTDADRWYYYKGSKLTAPTEKLRFL--NR-----ACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPI 325 (585)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (585)
... .+.. .+..... .. ..+..+ . . ...+..+++.++ +++.....+..
T Consensus 211 ~~~-------~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~--~-~~~~~~~~~~~~-----~~~~~~~~~~~ 264 (485)
T TIGR00711 211 PER-------GWFD---------SNEILILSITGLVAIIAFVVWE--L--T-DDNPLVDLRLFK-----YRNFTIGCVYM 264 (485)
T ss_pred CCC-------CCCC---------chHHHHHHHHHHHHHHHHHHHH--H--c-CCCCccCHHHHc-----CCChHHHHHHH
Confidence 000 0000 0000000 00 000000 0 0 000000110011 11111111111
Q ss_pred HHHHHHHHHhhcccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHH
Q 007910 326 WSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIG 405 (585)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~ 405 (585)
+.....++......+.+.....+.+.. ..+.......+..++..++. .++.+|.++| +.+.
T Consensus 265 ~~~~~~~~~~~~~~p~~~~~~~g~s~~--------~~g~~~~~~~~~~~~~~~~~----g~l~~r~~~~-------~~~~ 325 (485)
T TIGR00711 265 SLLGLGLYGSFYLLPLYLQQVLGYTAL--------QAGLHILPVGLAPMLSSPIA----GRMGDKIDPR-------KLVT 325 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHHHHHHHHHHHH----HHHHhhcCcH-------HHHH
Confidence 111111111111111111111111111 12223333444445555443 3455665544 6677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHH
Q 007910 406 IGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVA 485 (585)
Q Consensus 406 ~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g 485 (585)
++..+.+++..++.... .+..+....+...++.++|.+...++......+..|++.+|+++|
T Consensus 326 ~g~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~ 387 (485)
T TIGR00711 326 IGLILYAVGFYWRAFTF------------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSS 387 (485)
T ss_pred HHHHHHHHHHHHHhccC------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHH
Confidence 77777777766554211 012234445566788899999988888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007910 486 LLSLGMAVGNLVGSLIVTILN 506 (585)
Q Consensus 486 ~~~~~~~ig~~ig~~l~~~i~ 506 (585)
+++..+.+|+.+|+.+.+.+.
T Consensus 388 ~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 388 LSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=207.13 Aligned_cols=174 Identities=10% Similarity=0.097 Sum_probs=150.1
Q ss_pred cCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHH
Q 007910 13 KKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGT 92 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 92 (585)
++.+|+......+..+++.+..+..... ...+.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||++++++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~ 84 (405)
T TIGR00891 7 TRAQWNAFSAAWLGWLLDAFDFFLVALV-LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSI 84 (405)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHH
Confidence 4567777777777888888777665444 4566789999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 93 FTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
++..++.+++.++. +++.+++.|++.|++.+...+...+++.|.+|+ ++|
T Consensus 85 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~~ 134 (405)
T TIGR00891 85 VLFSAGTLACGFAP-----------------------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPK-------HLR 134 (405)
T ss_pred HHHHHHHHHHHHhc-----------------------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCCh-------hhh
Confidence 99999988887765 678899999999999999999999999999998 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHHH
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAG--WVVGFGVPVGLMLFST 218 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~i~~ 218 (585)
+++.++.+.+.++|..+++.+++.+.+..+ ||+.|++.++..++.+
T Consensus 135 ~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~ 182 (405)
T TIGR00891 135 NKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFAL 182 (405)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887665 9999987655444433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-21 Score=205.35 Aligned_cols=169 Identities=11% Similarity=0.114 Sum_probs=125.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhC---CChhhHHHHHHHH---HHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYH---MSGPEGANVLFLW---GAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~---~s~~~~~~i~~~~---~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
+..+++.+.... .+.+..++.++++ .+..+.+.+.+++ .++..++.+++|+++||+ ||||++.++.+++.++
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 345555555443 4666778888874 5555444444444 444448999999999997 9999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
.++++++++..+. ...+...+++.|+++|+|.|+..|...++++|.+|+ ++|+++.+.
T Consensus 107 ~~~~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~-------~~rg~~~~~ 164 (432)
T PRK10406 107 SLVIACLPGYETI---------------GTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVE-------GRKGFYASF 164 (432)
T ss_pred HHHHhhcCCchhH---------------HHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCC-------CcccHHHHH
Confidence 9998876521110 001345688999999999999999999999999999 778888998
Q ss_pred HHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQ--------DKAGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~--------~~~g~~~~f~~~~~~~~i~ 217 (585)
.+.+.+.|..+++.+...+. +.+|||+.|++.++..++.
T Consensus 165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 88888888888877655543 2579999998876655443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-21 Score=201.74 Aligned_cols=172 Identities=10% Similarity=0.064 Sum_probs=146.6
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+..+.+....++.....+...+.++ .+.+++|++..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLT-ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChH-HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 3455556666666666666655554 45788999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+.+++.++. +++.+++.|++.|++.+...+....++.|.+|+ ++|++.++
T Consensus 81 ~~~l~~~~~-----------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 130 (382)
T PRK10091 81 GNAMFTLSS-----------------------SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKP-------GKVTAAVA 130 (382)
T ss_pred HHHHHHHhC-----------------------cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCh-------HHhhHHHH
Confidence 999888866 788899999999999999888888899999988 77889999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
.+..+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus 131 ~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 131 GMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998999999998776655444433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-21 Score=201.07 Aligned_cols=168 Identities=17% Similarity=0.110 Sum_probs=134.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHH-HHHHHHHHHHHHH
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIAL-GTFTALLGMILLW 103 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~-~~~~~~~g~~~~~ 103 (585)
+..++..++.....+.++.|+.+++|.|+.+.+++.+.+.+...+..++.|+++||+ ||||.++. +.++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHHH
Confidence 456677777788888899999999999999999999999999999999999999996 99987655 4455555666666
Q ss_pred HhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh--HHHHHHHH
Q 007910 104 LTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ--TFFNWYYA 181 (585)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~ 181 (585)
+++ +++.+++.|+++|.+.+...|...++..|..|+ ++|. ...+....
T Consensus 83 ~~~-----------------------~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 132 (375)
T TIGR00899 83 WNR-----------------------NYFLLLVLGVLLSSFASTANPQLFALAREHADR-------TGREAVMFSSVMRA 132 (375)
T ss_pred hcc-----------------------hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh-------cchhhHHHHHHHHH
Confidence 544 677788889998888888888888888888765 3333 33677777
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 182 SVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+.++|..+||.+++++.+..|||+.|++.++..++..+..++
T Consensus 133 ~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~ 174 (375)
T TIGR00899 133 QISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL 174 (375)
T ss_pred HHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999899999999887766555444433
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=210.67 Aligned_cols=176 Identities=12% Similarity=0.045 Sum_probs=134.4
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
+++.......+.++..+..+.+.. +..++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~ 111 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAP-LLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 334444444455555555555443 44567889999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.++.++.+++. +.+.+++.|+++|++.+... ....+++|++|+ ++|+++
T Consensus 112 ~~~~~~~~~~~-----------------------s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~-------~~rg~a 160 (476)
T PLN00028 112 APAVFCMSLVS-----------------------SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNG-------KIVGTA 160 (476)
T ss_pred HHHHHHHHHhc-----------------------CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcCh-------hheeHH
Confidence 98888887765 66778899999999988654 456678999998 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----c-----ccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 176 FNWYYASVGLSYMASITLIVYIQ----D-----KAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~----~-----~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
+++.+...++|..+++.+.+.+. + ..|||+.|++.+++.++..++.++.
T Consensus 161 ~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 161 NGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988777888877766665442 2 2489999998777665554444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.9e-21 Score=205.28 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=128.2
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHh--CCChhhHHHHH-----HHHHHHHHHHhhHhHHhhhcccCchH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEY--HMSGPEGANVL-----FLWGAISNFLPIIGASISDSFLGRFR 86 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--~~s~~~~~~i~-----~~~~~~~~~~~~~~G~laD~~~Grr~ 86 (585)
..++|.....++..++|.+.........+.++.+++ +.++.+ +++. ++..++..++.++.|+++||+ |||+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~ 95 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKR 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHH
Confidence 344555555555666665555443333444556655 677663 4443 234455667888899999996 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 007910 87 VIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNP 166 (585)
Q Consensus 87 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 166 (585)
++.++.+++.++.++++++++..+. .......+++.|+++|++.|+..+....++.|.+|+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~---- 156 (438)
T PRK09952 96 MLMLTVWMMGIATALIGLLPSFSTI---------------GWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPK---- 156 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHH---------------HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCC----
Confidence 9999999999999999886621100 000122588899999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHHHHH
Q 007910 167 NNERILQTFFNWYYASVGLSYMASITLIVYIQ--------DKAGWVVGFGVPVGLML 215 (585)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~--------~~~g~~~~f~~~~~~~~ 215 (585)
++|++..+..+.+..+|..++..+..++. +.+|||+.|++.++..+
T Consensus 157 ---~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l 210 (438)
T PRK09952 157 ---NKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL 210 (438)
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence 77888888888888999888877766654 25799999988766543
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-20 Score=199.03 Aligned_cols=176 Identities=15% Similarity=0.085 Sum_probs=146.8
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
+++..+...+..++..++.....+.+ ..+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~ 80 (385)
T TIGR00710 3 AKAFALLLGCLSILGPLGIDMYLPAF-PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIF 80 (385)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHH
Confidence 33444444445555555554444444 456788999999999999999999999999999999996 9999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.++.+++.++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.
T Consensus 81 ~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 130 (385)
T TIGR00710 81 ALSSLGLALSN-----------------------NIETLLVLRFVQAFGASAGSVISQALVRDIYPG-------EELSRI 130 (385)
T ss_pred HHHHHHHHHHc-----------------------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCc-------HHHHHH
Confidence 99988888765 678899999999999999999999999999998 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+++.+...++|..++|.+++++.+..+|++.|++.++..++..+..++
T Consensus 131 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (385)
T TIGR00710 131 YSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999899999998877665555444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-21 Score=201.82 Aligned_cols=176 Identities=7% Similarity=0.026 Sum_probs=144.5
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
.+|+|..+..++..++.....+..-. +...+.+++|+|..+.+++.+.+.++..++.+++|+++||+ ||||++..+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~ 80 (394)
T PRK03699 3 SNRIKLTWISFLSYALTGALVIVTGM-VMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA 80 (394)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 45667777666666666555444433 44456788999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+..++.+++.+++ +.+.+++.|+++|++.+...+...+++.|.+|+ ++|+
T Consensus 81 ~~~i~~~l~~~~~-----------------------~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~-------~~r~ 130 (394)
T PRK03699 81 LMILAVAGLMFSH-----------------------SLALFSIAMFVLGVVSGITMSIGTFLITHVYEG-------KQRG 130 (394)
T ss_pred HHHHHHHHHHHcc-----------------------hHHHHHHHHHHHHHhhHhhccchhHHhhhhccc-------chHH
Confidence 9999988888755 678899999999999999999999999999988 7788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHH
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQD-KAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~-~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
+..+..+...++|..++|.+.+++.. ..|||+.|.+.+++.++..++.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 131 SRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 88888888888999999988887754 5799999987766555444433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-21 Score=200.03 Aligned_cols=345 Identities=17% Similarity=0.208 Sum_probs=252.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMIL 101 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~ 101 (585)
.+.+..++..+..+......+.|. +++|.++.+.+++.+...++..++.++.|+++||+ |||+.+..+.++..++.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 344566677777777777777765 56799999999999999999999999999999996 9999999999999999988
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
..+.. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+.
T Consensus 81 ~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 130 (352)
T cd06174 81 LAFAS-----------------------SLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP-------KERGRALGLFSA 130 (352)
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHcccccccHhHHHHHHHhCCc-------cchhhhhhHHHH
Confidence 88765 678899999999999999999999999999999 889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcc
Q 007910 182 SVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDA 261 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 261 (585)
..++|..++|.+++.+.+..+|++.|++.++..++..+...+..+.
T Consensus 131 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 176 (352)
T cd06174 131 GFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRL---------------------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------
Confidence 9999999999999999998899999988777666555544332200
Q ss_pred cccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cc
Q 007910 262 DRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YT 340 (585)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (585)
+................+.. .+
T Consensus 177 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 199 (352)
T cd06174 177 ---------------------------------------------------------LLLLALAFFLLSFGYYGLLTYLP 199 (352)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 00000111111111111111 11
Q ss_pred hhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchH-HHHHHHHHHHHHHHHHH
Q 007910 341 FPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQ-RIGIGLAISCVAMAVAA 419 (585)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~-~~~~g~~l~~i~~~~~~ 419 (585)
.+..+..+.+. ...+.......+...+..++ ..++.+|.++| + .+..+..+..++.....
T Consensus 200 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 200 LYLQEVLGLSA--------AEAGLLLSLFGLGGILGALL----GGLLSDRLGRR-------RLLLLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHH
Confidence 11111101111 11233344445555555555 34556777666 5 67777777777776665
Q ss_pred HHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHH
Q 007910 420 LVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGS 499 (585)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~ 499 (585)
... +.....+..++.+++.....+....++.+..|++.|++.+|+.+...++++.+++
T Consensus 261 ~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 318 (352)
T cd06174 261 LAP----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGP 318 (352)
T ss_pred Hhc----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3455677888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 500 LIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFI 546 (585)
Q Consensus 500 ~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~ 546 (585)
.+.+.+.+.. +++..|.+.+++.+++.+.++
T Consensus 319 ~i~g~l~~~~----------------~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 319 LLAGLLLDTG----------------GYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHhccc----------------CcchHHHHHHHHHHHHHHHhe
Confidence 9988865321 245667777777777766543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=210.96 Aligned_cols=153 Identities=15% Similarity=0.227 Sum_probs=129.0
Q ss_pred HHHHHHhCCC--------hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007910 43 FYLILEYHMS--------GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPP 114 (585)
Q Consensus 43 ~yl~~~l~~s--------~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 114 (585)
..+..+++++ ..+.+++.+++.++..++.++.|+++||+ |||++++++.+++.++.+++.+..+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~------- 123 (481)
T TIGR00879 52 ALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF------- 123 (481)
T ss_pred hcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3445556665 89999999999999999999999999996 9999999999999999888876441
Q ss_pred CCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 115 KCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194 (585)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 194 (585)
..+.+.++++|+++|+|.+...+...++++|.+|+ ++|++++++++.+.++|..+++.++
T Consensus 124 -------------~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 -------------ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPK-------ALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred -------------ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCCh-------hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11456899999999999999999999999999999 8899999999999999999999998
Q ss_pred ---HHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 195 ---VYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 195 ---~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
....+..+||+.|++.++..++..+..++
T Consensus 184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~ 215 (481)
T TIGR00879 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFF 215 (481)
T ss_pred HHhhcCCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 66667789999999866655555444433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=220.56 Aligned_cols=364 Identities=34% Similarity=0.504 Sum_probs=233.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCC
Q 007910 85 FRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPD 164 (585)
Q Consensus 85 r~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~ 164 (585)
.|+++++.+++.+|.+++.++. .|... .+..+.+.++++..++++|.|+..|+..++++|++++++
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~-~~~~~-------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~ 66 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSA-IPPSL-------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD 66 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHH-TSSSC-------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT
T ss_pred CHhhhHHHHHHHHHHHHhHHHH-hcchh-------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc
Confidence 4789999999999999988876 44322 112356789999999999999999999999999999864
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCcccccc-CCCCCcchh-HH
Q 007910 165 NPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKP-KANKVLFTG-FG 242 (585)
Q Consensus 165 ~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 242 (585)
+ ++|.++|+++|++.|+|+.+++.+.+++.++.||.+.|.++.+.++++++.++..++.+... ++.+++..+ ..
T Consensus 67 ~----~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~ 142 (372)
T PF00854_consen 67 D----SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIK 142 (372)
T ss_dssp T----THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SH
T ss_pred h----hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHH
Confidence 3 78899999999999999999999999999999999999999999999999999888887766 555666555 44
Q ss_pred HHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccc-cchhhHHHHHHHHH
Q 007910 243 QVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKL-CTVKQVEELKAIIK 321 (585)
Q Consensus 243 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 321 (585)
.+.....+++....+....+..............+.......+.+.... ...|+. ++.+.+++.|.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~k~~~~ 212 (372)
T PF00854_consen 143 LVLVAAFKKRKLAVPKGSSWLDWALFQYSERSIFGIIVFIRAAVIFFPE----------IFFWALFCQVQRVEELKALIR 212 (372)
T ss_dssp HHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC----------HHHHTTTSSTTTHHHCCHHHC
T ss_pred HHHHHHHHHhhcccccchHHHHHhhhhhhhhhhhhhhhhccchhhhhhh----------hhhcccCCccceeeeeeeeee
Confidence 4445555555444332111111100000000000000000001111000 001110 22344556666667
Q ss_pred HHHHHHHHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCc
Q 007910 322 VLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSY 400 (585)
Q Consensus 322 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~ 400 (585)
.+..+.+.+.++..+.+ ......+...++...++. +++|+.+++.+|.+.++++.|++|++.+|+.+ .+++ .+.
T Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~~~~---~~~ 287 (372)
T PF00854_consen 213 FLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGL-FGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-RGIQ---PSP 287 (372)
T ss_dssp HHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS-------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T---------
T ss_pred ccccCeEEEEeeehhhhhhhHHHHhccccccccccc-cccccchhhhHHHHHHHHHHHHHHHHHhHHhh-hccc---chh
Confidence 77776667777777777 666677777776555432 67899999999999999999999999999998 3333 789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchh
Q 007910 401 RQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMS 480 (585)
Q Consensus 401 ~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 480 (585)
..++.+|++++.++++..+..+..|.....+++ ..+..+.++.+++..++|.+..+...+.+++.+|++..
T Consensus 288 ~~k~~~G~~~~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p 358 (372)
T PF00854_consen 288 PQKFGIGMVFAILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAP 358 (372)
T ss_dssp HHHHHHH-HHHHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-S
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhh
Confidence 999999999999999988877765554433332 23446777999999999999999999977777666666
Q ss_pred hHHHHHHHHH
Q 007910 481 SIGVALLSLG 490 (585)
Q Consensus 481 g~~~g~~~~~ 490 (585)
+..+|++...
T Consensus 359 ~~m~~~~~~~ 368 (372)
T PF00854_consen 359 SSMMGIWFAL 368 (372)
T ss_dssp SSSTHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-22 Score=206.65 Aligned_cols=167 Identities=23% Similarity=0.267 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHH
Q 007910 24 IANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLW 103 (585)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~ 103 (585)
++..++..++.......++.++.+++|.++.+.+++.+++.+...++.++.|+++||+ ||||++..+.++.+++..+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4455666666666666666588899999999999999999999999999999999996 999999999999999955555
Q ss_pred HhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 007910 104 LTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASV 183 (585)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 183 (585)
++. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.....
T Consensus 81 ~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~ 130 (352)
T PF07690_consen 81 FAS-----------------------NFWLLLIARFLLGIGSGFFSPASNALIADWFPP-------EERGRAFGILSAGF 130 (352)
T ss_dssp HHC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT-------CCHHHHHHHHHHHH
T ss_pred hhh-----------------------hHHHHhhhccccccccccccccccccccccchh-------hhhhhccccccchh
Confidence 543 566899999999999999999999999999999 78999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 184 ~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
++|..++|.+++++.+..+||+.|++.+++.++..++.
T Consensus 131 ~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~ 168 (352)
T PF07690_consen 131 SLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILF 168 (352)
T ss_dssp HHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhcccchhhhhhhccccccccccccchhhhhhhhH
Confidence 99999999999999988999999999888777766543
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-20 Score=204.10 Aligned_cols=155 Identities=12% Similarity=0.069 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
+....|+.++ |++..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.++...
T Consensus 49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~---------- 116 (452)
T PRK11273 49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA---------- 116 (452)
T ss_pred HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence 3455677777 99999999999999999999999999999996 99999999999999888877764310
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHH-HHHHHHHHh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYM-ASITLIVYI 197 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~-~g~~~~~~l 197 (585)
..+.+.+++.|++.|++.+...+.....+.|++|+ ++|++++++++.+.++|.. .+|..+..+
T Consensus 117 ---------~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~l~~~~~ 180 (452)
T PRK11273 117 ---------TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGLPPLLFLLGM 180 (452)
T ss_pred ---------cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCCh-------HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 11567788999999999999988888889999998 8899999999999999874 556544333
Q ss_pred hcccchhHHHHHHHHHHHHHHHHH
Q 007910 198 QDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
....+||+.|++.+++.++..++.
T Consensus 181 ~~~~gw~~~f~i~~~~~~~~~~l~ 204 (452)
T PRK11273 181 AWFNDWHAALYMPAFAAILVALFA 204 (452)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHH
Confidence 334589999988776555544433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-21 Score=202.03 Aligned_cols=174 Identities=14% Similarity=0.072 Sum_probs=143.2
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
+|+.....++..+......+ .......++.+++|+++.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~ 92 (398)
T TIGR00895 15 QWRAIILSFLIMLMDGYDLA-AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF 92 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence 34444444444444444443 334455667788999999999999999999999999999999996 9999999999998
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.++.++..+.. +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.
T Consensus 93 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~ 142 (398)
T TIGR00895 93 SVFTLLCALAT-----------------------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPK-------RFRGTA 142 (398)
T ss_pred HHHHHHHHHcc-----------------------chHHHHHHHHHHhcccccchhhHHHHHHHHcCH-------Hhhchh
Confidence 88888877655 677889999999999999999999999999998 889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
+++...+.++|..+++.+++++.+..||+..|++.++..++..++.
T Consensus 143 ~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 188 (398)
T TIGR00895 143 VGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLL 188 (398)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHH
Confidence 9999999999999999999999998999999988754444433333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-20 Score=197.64 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=138.8
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
.|..+.+++..++..++...+.+.++.|+. ++|.|+.+++++.+.+.++..++.++.|+++||+ ||||++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 345777788888888888888888888865 6899999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++...+.+++ +++.+++.|++.|++.+...+...+.+.+..++ ++|++.+
T Consensus 83 ~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 132 (381)
T PRK03633 83 AGCAGLGLMV-----------------------GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS-------RNRGRLL 132 (381)
T ss_pred HHHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHH
Confidence 9988888765 778899999999999999988888888888887 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGF 207 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f 207 (585)
+.+..+.++|..+||.+++++.+...++..+
T Consensus 133 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~ 163 (381)
T PRK03633 133 AAYMMVYYLGTVLGQLLVSKVSTELMSVLPW 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHH
Confidence 9999999999999999999987754444333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-20 Score=195.69 Aligned_cols=171 Identities=10% Similarity=0.106 Sum_probs=141.3
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
-+.||.+....+.+++..++.+....+++.++ +++|+++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 45667788888888888888877778888887 67899999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+..++.+++.... .. ..+.+.+++.|++.|+|.+...+...+.+.+.+|+ ++|+
T Consensus 87 ~~~~~~~~~~~~~-~~------------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~-------~~~g 140 (402)
T TIGR00897 87 LWCVGHAAFIVFG-LG------------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQ-------DNLS 140 (402)
T ss_pred HHHHHHHHHHHHh-cc------------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCH-------HHHH
Confidence 9888876553211 00 01567788899999999988888888888899998 8899
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHH
Q 007910 174 TFFNWYYASVGLSY-MASITLIVYIQDKAGWVVGFGVPVG 212 (585)
Q Consensus 174 ~~~~~~~~~~~ig~-~~g~~~~~~l~~~~g~~~~f~~~~~ 212 (585)
++.++++.+.++|. .++|.+++++.+.+||+..++....
T Consensus 141 ~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~ 180 (402)
T TIGR00897 141 SAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA 180 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 99999999999996 5899999998888887666554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-20 Score=195.28 Aligned_cols=163 Identities=19% Similarity=0.198 Sum_probs=134.1
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
..+.++..+++..++.......++. +.+++|.++.+.+++.+.+.+...++.+++|+++||+ ||||+++++.++++++
T Consensus 4 ~f~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 4 GFYAIMAAQFFSALADNALLFAAIA-LLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLLG 81 (393)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHHH
Confidence 3455566666766655444443443 4678899999999999999999999999999999997 9999999999999988
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
.+++.+.. + .++.|+++|++.++..|+..+++.|++|+ ++|+++.++
T Consensus 82 ~~~~~~~~-----------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~-------~~~~~a~~~ 128 (393)
T PRK11195 82 CLLMLFGI-----------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPG-------EKLVKANGW 128 (393)
T ss_pred HHHHHHHH-----------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHH
Confidence 88776644 3 37789999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~ 217 (585)
.....++|..+||.+++++.+. .|+..+.+.+...+++
T Consensus 129 ~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~ 166 (393)
T PRK11195 129 MEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLA 166 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999885 4777766555444333
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-20 Score=195.08 Aligned_cols=175 Identities=14% Similarity=0.090 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHH-HHHHHhhHhHHhhhcccCchHHHH-HHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGA-ISNFLPIIGASISDSFLGRFRVIA-LGTFTA 95 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~-~~~~~~ 95 (585)
+..+..+...++.+++.....+.++.|+.+++|.++++.+++.+...+ ...+.++++|+ +||+ ||||.++ .+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence 445566667888899988889999999999999999999999876655 44455555666 9997 9998754 445555
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.++..+..++. +++.+++.+.+.+...+...|...++..|..+++ + +..+..
T Consensus 93 ~~~~~~~~~~~-----------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~ 144 (393)
T PRK15011 93 VLACTLFAWNR-----------------------NYFVLLFVGVFLSSFGSTANPQMFALAREHADKT----G-REAVMF 144 (393)
T ss_pred HHHHHHHHHhh-----------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhc----c-chHHHH
Confidence 56666666554 5666655555544444566777778777766541 1 123455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
.+..+.+.++|.++||.+++++.+++|||..|++.++..++..+...
T Consensus 145 ~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 145 SSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999989999999887765555444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-19 Score=193.05 Aligned_cols=148 Identities=14% Similarity=0.093 Sum_probs=131.5
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCC
Q 007910 45 LILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICP 124 (585)
Q Consensus 45 l~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (585)
+.+++|.+..+.++..+++.++..++.++.|+++||+ |||++++.+.+++.++.+++.+++
T Consensus 42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~------------------ 102 (413)
T PRK15403 42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTT------------------ 102 (413)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcC------------------
Confidence 5678999999999999999999999999999999996 999999999999999998888765
Q ss_pred CCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 007910 125 AAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWV 204 (585)
Q Consensus 125 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~ 204 (585)
+.+.++++|+++|++.+...+...+++.|.+|+ ++|++.++++....++|..+||.+++++.++.|||
T Consensus 103 -----~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~ 170 (413)
T PRK15403 103 -----SMTQFLIARFIQGTSICFIATVGYVTVQEAFGQ-------TKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK 170 (413)
T ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 778899999999999987777777889999998 78899999999999999999999999999888999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007910 205 VGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~ 223 (585)
+.|++.++..++..+..++
T Consensus 171 ~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 171 VLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999877766665544333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=203.25 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=129.6
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCC
Q 007910 48 EYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAK 127 (585)
Q Consensus 48 ~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (585)
++|++..+.+++.+.+.+++.++.+++|+++||+ |||+++..+.++..++.++..++..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~-------------------- 128 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG-------------------- 128 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH--------------------
Confidence 6899999999999999999999999999999996 9999999999988888877655430
Q ss_pred cchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHH
Q 007910 128 PRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK-AGWVVG 206 (585)
Q Consensus 128 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~-~g~~~~ 206 (585)
.+...+++.|+++|++.+...|....+++|++|+ ++|+++.++++.+.++|..++|.+++++.+. .|||+.
T Consensus 129 -~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 129 -GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP-------KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred -cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 1456789999999999999999999999999999 8999999999999999999999999999988 499999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007910 207 FGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 207 f~~~~~~~~i~~~~~~~~ 224 (585)
|++.++..++..++++..
T Consensus 201 f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 201 FYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred hhhhhHHHHHHHHHHHHH
Confidence 998877665555544443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-19 Score=190.65 Aligned_cols=364 Identities=10% Similarity=-0.024 Sum_probs=224.0
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHH----HHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIA----LGTFT 94 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~----~~~~~ 94 (585)
....+.+..++...++....++++.|+ +++|+|..+.+++.+++.+...++.++.|.++||+ ||++... ++.++
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l-~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWL-KGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 344445555555555555667788887 56899999999999999999999999999999996 9854332 22222
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
+.+ .....++ +.+.+++.|++++.+.+...|...++..+. . ++|++
T Consensus 83 ~~~--~~~~~~~-----------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~-------~~~~~ 128 (382)
T TIGR00902 83 FAA--AFSAGAH-----------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--Q-------KQFGL 128 (382)
T ss_pred HHH--HHHHhhh-----------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--H-------HHcCC
Confidence 221 1122222 678888999999999888888888876543 3 55677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCC
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHL 254 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 254 (585)
.++......++|.+++|.+++++.+++|||..|++.....++.+ +.+...++. +++++..+
T Consensus 129 ~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~--------------- 189 (382)
T TIGR00902 129 DYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKDAIPE--------------- 189 (382)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCccccc---------------
Confidence 88999999999999999999999999999999887654433222 222222211 01000000
Q ss_pred CCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHH-HHHHHHHHH
Q 007910 255 PLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLP-IWSSGIMIA 333 (585)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 333 (585)
+ + ..+. ..++ +-.++ |++...+. .++......
T Consensus 190 ---~---------~------~~~~------------------------~~~~----~~l~~-~~~~~~l~~~~l~~~~~~ 222 (382)
T TIGR00902 190 ---D---------E------SQGD------------------------SAFI----ALLKN-PMNLRFLAAVCLIQGAHA 222 (382)
T ss_pred ---c---------c------cccc------------------------hhHH----HHHcC-hHHHHHHHHHHHHHHHHH
Confidence 0 0 0000 0000 00001 12211111 111111111
Q ss_pred HhhcccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHH
Q 007910 334 VTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCV 413 (585)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i 413 (585)
..+...+.++ +..+.+... .+.......+..++. ..+.+|+.+| ++.++.+.++.+...+
T Consensus 223 ~~~~~~~~~l-~~~g~s~~~--------~g~l~~~~~~~~i~~--------~~~~~~l~~r---~g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 223 AYYGFSAIYW-QAAGISASA--------TGLLWGIGVLAEIII--------FAFSNKLFQN---CSARDLLLISAIACVG 282 (382)
T ss_pred HHHHHHHHHH-HHCCCCHhH--------HHHHHHHHHHHHHHH--------HHHhHHHHhh---CCHHHHHHHHHHHHHH
Confidence 1111111111 111111111 112222222333332 3333444444 5666888889888888
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHH-HHHH
Q 007910 414 AMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLS-LGMA 492 (585)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ 492 (585)
.+..++..+ +.+.++...++.++.++...+....++.+. |++.|++++++++ +..+
T Consensus 283 ~~~~~~~~~----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g 339 (382)
T TIGR00902 283 RWAIIGAIE----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMG 339 (382)
T ss_pred HHHHHHhHh----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHH
Confidence 877776544 555566678999999999999999999988 9999999999987 5678
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHH
Q 007910 493 VGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFY 544 (585)
Q Consensus 493 ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~ 544 (585)
+|..+++.+.|.+.+..+ ...|+..+++.++++++
T Consensus 340 ~g~~~g~~~~G~l~~~~g-----------------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 340 GLIAIFTAFAGFIYPTLG-----------------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHhcc-----------------HHHHHHHHHHHHHHHHH
Confidence 999999999998765432 24577778877766543
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=204.14 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=128.6
Q ss_pred HHHHHhCCC---hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCc
Q 007910 44 YLILEYHMS---GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI 120 (585)
Q Consensus 44 yl~~~l~~s---~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 120 (585)
-+.+++|++ +.+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.++.+++.
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~-------------- 178 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSP-------------- 178 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 356689998 89999999999999999999999999996 999999999999999988888766
Q ss_pred ccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007910 121 EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK 200 (585)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~ 200 (585)
+++.+++.|++.|++.++..+...+++.|.+|+ ++|++..+++..+..+|.+++|.++..+.+
T Consensus 179 ---------~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 241 (505)
T TIGR00898 179 ---------NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPK-------KQRAIVGTLIQVFFSLGLVLLPLVAYFIPD- 241 (505)
T ss_pred ---------cHHHHHHHHHHHHhhccchHHHHHHHhheecCh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-
Confidence 788899999999999999999999999999999 888999999999999999999988766653
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 007910 201 AGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 201 ~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
||+.|++.++..++..+..++.
T Consensus 242 --wr~~~~~~~i~~~~~~~~~~~~ 263 (505)
T TIGR00898 242 --WRWLQLAVSLPTFLFFLLSWFV 263 (505)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988777666555554443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-20 Score=199.39 Aligned_cols=391 Identities=9% Similarity=-0.004 Sum_probs=222.4
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+..+.+....++..++++...+.++.|+.+++|+|+.+.+.+.+++.+...+++++.|+++||+ ||||++.++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~ 88 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV 88 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 4566666777777888888899999999999999999999999999999999999999999996 999999887666555
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+..........+. -....+.+..+.++..+...+.....+.++.+. .. +++++.++
T Consensus 89 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~g~~~g 144 (420)
T PRK09528 89 LFGPFFIYVFAPL-------------------LQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-VS----RRSGFEYG 144 (420)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-HH----hhccccch
Confidence 4432221110000 000011222222333333333323333333221 01 34566777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCC
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLP 257 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 257 (585)
..+...++|..++|.+++++.+ .+|+..|++.++..++..++.+...++.++++..++ + +
T Consensus 145 ~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~----~ 204 (420)
T PRK09528 145 RARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVAN---------------A----L 204 (420)
T ss_pred hhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhcc---------------c----h
Confidence 7788889999999999999876 589999988776665555554443322111000000 0 0
Q ss_pred CCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 258 PTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTIS 337 (585)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (585)
+. + .++.+..+......+ +.+.............+..+.
T Consensus 205 ~~--------~-------~~~~~~~~~~~~l~~--------------------------~~~~~l~l~~~~~~~~~~~~~ 243 (420)
T PRK09528 205 GA--------N-------ASAVSLKDALALLKL--------------------------PKFWFLVLYVIGVACFYDVFD 243 (420)
T ss_pred hc--------c-------cccccHHHHHHHccC--------------------------CCeEeehHHHHHHHHHHHHHH
Confidence 00 0 000000000000000 000011111111111111122
Q ss_pred -c-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHH
Q 007910 338 -Q-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAM 415 (585)
Q Consensus 338 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~ 415 (585)
+ +.+.. +.. .+..... ...+.+..++.+...+..++ ..++.+|+++| +.+..+..+.+++.
T Consensus 244 ~~~~~~~~-~~~-~~~~~~~----~~~g~~~~~~~~~~~~~~~~----~g~l~dr~g~~-------~~~~~~~~l~~~~~ 306 (420)
T PRK09528 244 QQFPNFFA-SFF-ATPEQGT----RVFGYLNSFQVFLEALIMFF----APFIINRIGAK-------NALLLAGTIMAVRI 306 (420)
T ss_pred HHHHHHHH-HHH-hccCcch----HHHHHHHHHHHHHHHHHHHH----HHHHHHHhCcc-------hhhHHHHHHHHHHH
Confidence 2 22211 110 0111100 00122233333333343333 44566777666 56667777777766
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHH-HHHHHHHH
Q 007910 416 AVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVAL-LSLGMAVG 494 (585)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig 494 (585)
+..++.. +.+.++...++.+++.....+....++.+..|++.+++..++ ++....+|
T Consensus 307 ~l~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg 364 (420)
T PRK09528 307 IGSGFAT----------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLG 364 (420)
T ss_pred HHHHhcc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHH
Confidence 6655433 344556667778888878888888899899999999988765 67788899
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007910 495 NLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACS 549 (585)
Q Consensus 495 ~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~ 549 (585)
..+++.+.+.+.+..| |+..|.+.+++.++..++.+...
T Consensus 365 ~~ig~~~~G~l~~~~G----------------~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 365 AVFLSTLAGNLYDSIG----------------FQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred HHHHHHHHHHHHHhhC----------------chHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888765432 46778877777776665555443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=203.13 Aligned_cols=181 Identities=13% Similarity=0.138 Sum_probs=161.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
+..++.+.++++++.+++.--|.+.. ...-+++.+|++++..+++..++.+...+++|+.|+++||| .||+++.+|..
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iag-v~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAG-VLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHH
Confidence 34456677788899999888887766 33445778999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
++.++.++..++. .+|.+.+.|.+.|+|.+.+.|.++++++|.||. ++|+
T Consensus 107 iW~~Av~~~~fs~-----------------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-------~~Rs 156 (493)
T KOG1330|consen 107 IWTLAVFASGFSN-----------------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPD-------DKRS 156 (493)
T ss_pred HHHHHHHHHHHHH-----------------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcc-------hhhh
Confidence 9999999999986 889999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+.++++|+.+++|..+|...+..+.+..+ |||.|++.+++.++..++.++..+
T Consensus 157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhcc
Confidence 99999999999999999999999887665 999999998888777776665544
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-20 Score=196.70 Aligned_cols=174 Identities=13% Similarity=0.064 Sum_probs=126.2
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHH-HHHHH-----HHHHHhhHhHHhhhcccCchHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVL-FLWGA-----ISNFLPIIGASISDSFLGRFRVI 88 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~-~~~~~-----~~~~~~~~~G~laD~~~Grr~~l 88 (585)
.+++.....++..+++.+....+ ......+.++++.++.+.+... +.... ...++.++.|+++||+ ||||++
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l 89 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGL 89 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHH
Confidence 34445544555555555544443 4555677889999887765433 22222 2236788999999996 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcc
Q 007910 89 ALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNN 168 (585)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 168 (585)
+.+.+++.++.++++++.+..... ......++++|+++|++.+...+....+++|++|+
T Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~------ 148 (434)
T PRK15075 90 IVTLSIMASGTLLIAFVPGYATIG---------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP------ 148 (434)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHH---------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc------
Confidence 999999999999998865211000 00012468999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhh--------cccchhHHHHHHHH
Q 007910 169 ERILQTFFNWYYASVGLSYMASITLIVYIQ--------DKAGWVVGFGVPVG 212 (585)
Q Consensus 169 ~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~--------~~~g~~~~f~~~~~ 212 (585)
++|++..+++..+.++|..+++.+++.+. +.+|||+.|++.+.
T Consensus 149 -~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 149 -GRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 88899999988888888888887776652 46799999987543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=192.01 Aligned_cols=173 Identities=13% Similarity=0.114 Sum_probs=143.9
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
+.+|..+...++.++..+..+...+.+ .++.+++|+|+.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~ 82 (394)
T PRK11652 5 RNVNLLFMLVLLVAVGQMAQTIYVPAI-ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI 82 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence 355666666666666666555444444 455688999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
..++.+++.++. +.+.+++.|++.|++.+...+....+..|.++. ++|++
T Consensus 83 ~~~~~~~~~~~~-----------------------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~ 132 (394)
T PRK11652 83 FILGTLVALFAH-----------------------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEG-------TQLRH 132 (394)
T ss_pred HHHHHHHHHHHc-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCH-------HHHHH
Confidence 998888877755 678899999999999988888888888898887 77888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~ 219 (585)
..+.+..+..+|..++|.+++++.+..|||+.|++.++..++..+
T Consensus 133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999888999999887665544433
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-19 Score=187.83 Aligned_cols=167 Identities=14% Similarity=0.068 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
.+...+....+.+.....+ ..+.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||+.++.+.+++.++..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~l-p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~~~ 85 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGL-PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASLLC 85 (392)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHHHH
Confidence 3344555555555444444 445678999999999999999999999999999999996 99999999999999998888
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
..+. +.+.+++.|+++|++.+...+...+++.|.+|+ ++|++..++.+..
T Consensus 86 ~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~ 135 (392)
T PRK10473 86 SLAE-----------------------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDD-------RRRAKVLSLLNGI 135 (392)
T ss_pred HHhC-----------------------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHH
Confidence 7655 667788999999999999899999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 183 VGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 183 ~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
.++|..++|.+++++.+..+|++.|++.++..++..++.
T Consensus 136 ~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~ 174 (392)
T PRK10473 136 TCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS 174 (392)
T ss_pred HHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888899999988776655544443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=197.60 Aligned_cols=402 Identities=12% Similarity=0.083 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHH
Q 007910 57 ANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFS 136 (585)
Q Consensus 57 ~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (585)
+.+++++.+++++++.++|+++||+ |||+.+.++.++..++.+++.++...+ +..++++
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~~--------------------~~e~li~ 121 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSAP--------------------SFEMLIL 121 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhh--------------------hHHHHHH
Confidence 4567889999999999999999997 999999999999999888888765222 6789999
Q ss_pred HHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH-H-hhcccchhHHHHHHHHHH
Q 007910 137 SFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIV-Y-IQDKAGWVVGFGVPVGLM 214 (585)
Q Consensus 137 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~-~-l~~~~g~~~~f~~~~~~~ 214 (585)
+|++.|+..|......+.++.|..|+ +.||..-.....+..+|.+++..++. . +...-.|++.+....+..
T Consensus 122 GR~i~Gl~~gl~~~~~pmyl~E~sP~-------~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~ 194 (485)
T KOG0569|consen 122 GRLIVGLACGLSTGLVPMYLTEISPK-------NLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPA 194 (485)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhcChh-------hhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999 89999888999999999999976652 2 334456999988888877
Q ss_pred HHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccc
Q 007910 215 LFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKE 294 (585)
Q Consensus 215 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 294 (585)
++.+++..++++..+..--+++..++ . ..++|.-+ ...+++ ++.+..++..-..
T Consensus 195 ~~~l~~l~~~PESPk~Ll~~k~~~~~-A---~~sl~~y~-----------G~~~~~------~~~e~~~~e~~~~----- 248 (485)
T KOG0569|consen 195 LLQLALLPFLPESPKYLLIKKGDEEE-A---RKALKFYR-----------GKEDVE------AEIEEMLREIEEE----- 248 (485)
T ss_pred HHHHHHHhcCCCCcchHHHHcCCHHH-H---HHHHHHHh-----------CCCcch------hHHHHHHHHHHHh-----
Confidence 77777766655432110000000000 0 11111110 000000 0000000000000
Q ss_pred cccCCCCCCCc-cccchhhHHHHHHHHHHHHHHHHHHHHHHh--hcccchhhhhhcccccccCCcccccCCCcccchhHH
Q 007910 295 LDLDGKAIEPW-KLCTVKQVEELKAIIKVLPIWSSGIMIAVT--ISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAIL 371 (585)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (585)
+.+......+ +.++.+. .++..+..+.+...+.+.... ..+++. +....++.... -...+.....++.+
T Consensus 249 -~~~~~~~~sl~~~~~~~~--lR~~~~i~~~v~~~qq~sGi~ai~~Yst~-i~~~aG~~~~~----a~~an~~~g~v~~~ 320 (485)
T KOG0569|consen 249 -ELEKKKQISLRQLLKNPT--LRRPLLIGIVVSFAQQFSGINAIFFYSTS-IFKTAGFTPEE----AQYANLGIGIVNLL 320 (485)
T ss_pred -ccccccCCcHHHHhcCcc--hhHHHHHHHHHHHHHHhcCcceeHHHHHH-HHHHcCCCHHH----HHHHHHHHHHHHHH
Confidence 0000001111 1111110 112211111111111110000 000111 11111111110 00111112222233
Q ss_pred HHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhh--hH
Q 007910 372 TLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAM--WL 449 (585)
Q Consensus 372 ~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 449 (585)
..++ ...+++|+||| ..+..++.++.+..+++.......... . +|. ..
T Consensus 321 ~t~~--------~~~lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~--------------~-~~~~y~~ 370 (485)
T KOG0569|consen 321 STLV--------SPFLIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSF--------------G-SWLSYLC 370 (485)
T ss_pred HHHH--------HHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHh--------------h-hHHHHHH
Confidence 3333 34556798888 677777777777666665554221100 0 111 12
Q ss_pred HHHHHHHHHHHHH-HhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhH
Q 007910 450 VPQNCLIGLAEAF-NAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYD 528 (585)
Q Consensus 450 i~~~~l~g~g~~~-~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~ 528 (585)
+...++..+...+ ..|..+-+..|.+|++.|+.++++...++++++++.....+.+....| +
T Consensus 371 i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~ 433 (485)
T KOG0569|consen 371 IAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------P 433 (485)
T ss_pred HHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence 3344444444433 356666777788999999999999999999999999998888876665 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcccCCcccchhhhh
Q 007910 529 YYYWILCILSVVNFFYFIACSWAYGSCEDIKVWDEGEAM 567 (585)
Q Consensus 529 ~~f~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (585)
++|+.+.+.+++..++.+...+|+|+|+..|..++-+++
T Consensus 434 ~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 434 YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 568888999999999999999999999776666555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-19 Score=188.62 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=129.8
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCC
Q 007910 45 LILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICP 124 (585)
Q Consensus 45 l~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (585)
+.+++|.++.+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++.+++.++.
T Consensus 32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------------ 92 (401)
T PRK11043 32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVE------------------ 92 (401)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 6788999999999999999999999999999999996 999999999999888888887755
Q ss_pred CCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchh
Q 007910 125 AAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWV 204 (585)
Q Consensus 125 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~ 204 (585)
+.+.+++.|++.|++.+...+...+++.|.+|+ +++.+.++......++|..++|.+++++.+..|||
T Consensus 93 -----~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~ 160 (401)
T PRK11043 93 -----SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPA-------QKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQ 160 (401)
T ss_pred -----CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Confidence 678899999999999888888888999999998 77788888888888999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007910 205 VGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~ 223 (585)
+.|++..+..++..++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (401)
T PRK11043 161 AIFATLFAITLLLILPTLR 179 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998877666555444433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=189.81 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHhHhHH---HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLH---ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~---~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
-+-++...++.-.+||.+- ....+++.++.++|.+|.+.+.+.+++.+.++-.+.|.++||. +.|+.+-.++++.+
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLilsa 105 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHHHH
Confidence 3445556666677777654 3455788899999999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
+..+++++++ +.+.+.+..++.|+..|+-+|.+...++.+||. +|||+..
T Consensus 106 i~nil~Gfs~-----------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr-------~eRG~~~ 155 (448)
T COG2271 106 IVNILFGFSP-----------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSR-------KERGTWW 155 (448)
T ss_pred HHHHHHhhhh-----------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCc-------cccCceE
Confidence 9999999987 778888999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHH--HHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 177 NWYYASVGLSYMASITLI--VYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~--~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
++++.+-|+|+.+.|.+. +++..+.+||..|++++++.++..++.++..+
T Consensus 156 siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~r 207 (448)
T COG2271 156 SIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLR 207 (448)
T ss_pred EEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999 99999899999999998877655555444333
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=193.35 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=127.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 007910 40 NMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF 119 (585)
Q Consensus 40 ~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 119 (585)
....++.+ +|+++.+.+++.+++.++..++.++.|+++||+ |||+.+..+.++..++.+++.+..+..
T Consensus 48 ~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 115 (438)
T TIGR00712 48 LAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWAT---------- 115 (438)
T ss_pred hhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhcccccc----------
Confidence 34456665 599999999999999999999999999999996 999999999888888887766532111
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Q 007910 120 IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ- 198 (585)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~- 198 (585)
.+...+++.|++.|++.+...+.....+.|++|+ ++|++++++++.+.++|..+++.+.+.+.
T Consensus 116 ---------~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~-------~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~ 179 (438)
T TIGR00712 116 ---------SSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQ-------SERGTIVSIWNCAHNIGGGIPPLLVLLGMA 179 (438)
T ss_pred ---------chHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCc-------ccchhHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 1566778899999999999999899999999998 88999999999999999999887776544
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 007910 199 DKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 199 ~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+..+||..|++.+++.++..++.++
T Consensus 180 ~~~~w~~~f~~~~~~~~i~~~~~~~ 204 (438)
T TIGR00712 180 WFNDWHAALYFPAICAIIVALFAFA 204 (438)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999877766654444333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-18 Score=187.05 Aligned_cols=380 Identities=13% Similarity=0.048 Sum_probs=240.9
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
....+...+.+.+++.......++-++ .++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+-++.++.
T Consensus 11 ~Fr~lw~a~~iS~lG~~~~~va~~wlv-~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~~ 88 (524)
T PF05977_consen 11 NFRRLWIAQLISNLGDWMQTVALAWLV-TQLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRALV 88 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHH
Confidence 444455566666666554444444444 35677899999999999999999999999999997 9999999999888776
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
.+.+++.... +..+.+.+++.-++.|++.++..|+-++++.|+.|+ ++..++.++
T Consensus 89 ~~~L~~l~~~------------------~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~-------~~L~~A~al 143 (524)
T PF05977_consen 89 ALLLAVLAFF------------------GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPK-------EDLPAANAL 143 (524)
T ss_pred HHHHHHHHHh------------------CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-------hhHHHHHHH
Confidence 6665543311 122678888888999999999999999999999999 888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCC
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPP 258 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 258 (585)
.....|+.-.+||.++|.+...+|-.+.|.+.++..++.++++...++... ++..+.+...+.+...++
T Consensus 144 ~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~e~~~~~l~~G~r-------- 212 (524)
T PF05977_consen 144 NSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSSLPRERFFSALREGLR-------- 212 (524)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccccchhhhhhhHHHHHH--------
Confidence 999999999999999999988888889998887766665554443332211 111010000000000000
Q ss_pred CcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHH-HHHHHHHHhhc
Q 007910 259 TDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIW-SSGIMIAVTIS 337 (585)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 337 (585)
+ +.+-+.+...+... ++.........
T Consensus 213 ----------------------y-------------------------------v~~~~~l~~~l~~~~~~~l~~~a~~a 239 (524)
T PF05977_consen 213 ----------------------Y-------------------------------VRSSPPLRSVLLRSFLFNLFASAVWA 239 (524)
T ss_pred ----------------------H-------------------------------HhcchHHHHHHHHHHHHHHhhhHHHH
Confidence 0 00001111111110 01110000000
Q ss_pred ccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 007910 338 QYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAV 417 (585)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~ 417 (585)
...++..+..+.+.. .-+.+.....++.+++..+. .|+.++ .+..+.+..+.++.+++++.
T Consensus 240 LlPl~a~~~l~~~a~--------~yGll~a~~gvGai~Gal~~--------~~l~~~---~~~~~lv~~~~~~~a~~~~~ 300 (524)
T PF05977_consen 240 LLPLFARDVLGGGAS--------GYGLLLAAFGVGAILGALLL--------PRLRRR---LSSRRLVLLASLLFALALLL 300 (524)
T ss_pred hhhHHHHHHhCCcHH--------HHHHHHHHHHHHHHHHHHHH--------HHhhcc---cCcchhhHHHHHHHHHHHHH
Confidence 011111111111110 01122222233333333221 233233 44446777777777777776
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHH
Q 007910 418 AALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLV 497 (585)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~i 497 (585)
+++.. +.+...+..++.|.+.....+..++.+....|+++||+.+|++......+..+
T Consensus 301 lal~~----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~l 358 (524)
T PF05977_consen 301 LALSP----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPL 358 (524)
T ss_pred Hhcch----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHH
Confidence 66544 45556677888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 498 GSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFI 546 (585)
Q Consensus 498 g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~ 546 (585)
|..+.|.+.+..| ....+.+.++..+++.++.+
T Consensus 359 Gsll~G~la~~~g----------------~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 359 GSLLWGFLADHFG----------------VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHhC----------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999998775543 24456555555555554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=191.60 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=134.5
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
.....++.+++|+++.+.+++.+++.++..++.++.|+++||+ |||++++++.++..++.+++.++.
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~------------ 81 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFST------------ 81 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhh------------
Confidence 4445678889999999999999999999999999999999996 999999999999999998888866
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH-HHHHHh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASI-TLIVYI 197 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~-~~~~~l 197 (585)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++++++...+.++|..++| .+++.+
T Consensus 82 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (379)
T TIGR00881 82 -----------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSR-------SERGTWVSFWNCSHNVGGGLLPPLVLFGI 143 (379)
T ss_pred -----------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCH-------hhheeeEeehhccchhHHHHHHHHHHHHH
Confidence 678899999999999999999999999999998 8889999999999999999999 577777
Q ss_pred hcccchhHHHHHHHHHHHHHHHHHH
Q 007910 198 QDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 198 ~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
.+..+|++.|++.+++.++..++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (379)
T TIGR00881 144 AELYSWHWVFIVPGIIAIIVSLICF 168 (379)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHh
Confidence 7788999999887765555444433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=196.49 Aligned_cols=373 Identities=17% Similarity=0.164 Sum_probs=236.8
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCC
Q 007910 48 EYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAK 127 (585)
Q Consensus 48 ~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (585)
+++++..+-+++.+.+..++.++.+++|+++||+ |-|+++..+.++.+++.++.+++..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~-------------------- 125 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS-------------------- 125 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 5789999999999999999999999999999997 9999999999999999999998772
Q ss_pred cchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhHH
Q 007910 128 PRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK-AGWVVG 206 (585)
Q Consensus 128 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~-~g~~~~ 206 (585)
.+++.+++.|+++|++.|...|+...+.+.++|+ .||++..++.+.+..+|.+++..++|++.++ +||+++
T Consensus 126 -~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~-------~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si 197 (466)
T KOG2532|consen 126 -IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP-------NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI 197 (466)
T ss_pred -hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence 2345789999999999999999999999999999 9999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhh
Q 007910 207 FGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRAC 286 (585)
Q Consensus 207 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (585)
|++.+.+.++..+++++...+.+.+++.-+.. +++++++..
T Consensus 198 fY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~---------------------------------------El~~I~~~k 238 (466)
T KOG2532|consen 198 FYVFGIVGLIWFILWFLFYSDSPSKHPNISEK---------------------------------------ELKYIEKGK 238 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCCCCCHH---------------------------------------HHHHHHhcc
Confidence 99988877776666655544332222211110 001111100
Q ss_pred hccccccccccCCCCCCCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCc
Q 007910 287 VVQNREKELDLDGKAIEPWKL-CTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGS 364 (585)
Q Consensus 287 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (585)
.... .......||+. +++. ..+...+..+.....++...++ +++ +.+...++... .+.
T Consensus 239 ~~~~------~~~~~~vP~~~i~ts~-----~vwai~~~~f~~~~~~~~l~~y~PtY-~~~VL~f~v~~--------~G~ 298 (466)
T KOG2532|consen 239 SEAH------VKKKPPVPYKAILTSP-----PVWAIWISAFGGNWGFYLLLTYLPTY-LKEVLGFDVRE--------TGF 298 (466)
T ss_pred cccc------cCCCCCCCHHHHHcCH-----HHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHhCCChhh--------hhH
Confidence 0000 00002345531 1211 1111112222223333344444 555 45555555433 344
Q ss_pred ccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccc
Q 007910 365 FGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRI--GIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVV 442 (585)
Q Consensus 365 ~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~--~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (585)
+..+.-+...+...+...+.+.+..| +-. ....+++ .+++...++.++.+++.. .+
T Consensus 299 ~salP~l~~~~~k~~~g~lsD~l~~~-~ls---~t~~rkifn~i~~~~~ai~l~~l~~~~--------------~~---- 356 (466)
T KOG2532|consen 299 LSALPFLAMAIVKFVAGQLSDRLTFR-ILS---ETTVRKIFNTIAFGGPAVFLLVLAFTS--------------DE---- 356 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cCc---hHhHHHHHHhHHHHHHHHHHHeeeecC--------------CC----
Confidence 45555444444444444334444443 211 1222233 344444444444444333 00
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhHHHhh---hcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q 007910 443 ALTAMWLVPQNCLIGLAEAFNAIGQIEFYY---SQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVS 519 (585)
Q Consensus 443 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~---~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~ 519 (585)
+.. .+.+++.++.++.......+.. +.+ +++.+..+|+.++...+.++++|.+++.+.. .
T Consensus 357 --~~~---~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~---------- 419 (466)
T KOG2532|consen 357 --HRL---LAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D---------- 419 (466)
T ss_pred --cch---HHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C----------
Confidence 111 1222223333332222222322 224 5889999999999999999999999877542 1
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007910 520 TNVNRAHYDYYYWILCILSVVNFFYFIACS 549 (585)
Q Consensus 520 ~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~ 549 (585)
+ +...++.+|++.+++.+++.++|.++.
T Consensus 420 -~-t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 420 -N-TREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred -C-CHHHHHHHHHHHHHHHHHhchheeEee
Confidence 1 223458999999999999998777665
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-19 Score=187.29 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=132.4
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHH-HhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLIL-EYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
|.++...+. +...+....+.+.+...+.+ ++|+|++|.+++.+++.+.+.++.++.|++.||+ |.|+++.++.++..
T Consensus 34 r~l~~s~~~-f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~ 111 (462)
T PRK15034 34 RNLWISVSC-LLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHH
Confidence 434443333 34444444445556666655 7999999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
+..++..++...+ ..+++.+++.|++.|++ +...+.....++++||+ ++|++++
T Consensus 112 i~~~~~~~a~~~~------------------~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~-------~~rG~A~ 165 (462)
T PRK15034 112 IPCVWLGIAVQNP------------------NTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK-------AKQGSAL 165 (462)
T ss_pred HHHHHHHHHHccc------------------CCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH-------hHhHHHH
Confidence 9888888751000 01688999999999998 66888899999999999 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-----c-------------ccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 177 NWYYASVGLSYMASITLIVYIQ-----D-------------KAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~-----~-------------~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
+++....|+|..+++.+.+.+. . ..+|+..+++..++.++..++.++.
T Consensus 166 Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 166 GINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998777888877666654432 2 2336666656555555554444443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-18 Score=183.39 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007910 37 LHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKC 116 (585)
Q Consensus 37 ~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 116 (585)
..+.++.+ .+++|+++.+.+++.+++.++..++.++.|+++||+ |||+++..+.++..++..++.+..
T Consensus 10 ~~p~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~---------- 77 (377)
T PRK11102 10 YLPALPVI-AADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQ---------- 77 (377)
T ss_pred HhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHc----------
Confidence 34555555 467999999999999999999999999999999996 999999999999999998888765
Q ss_pred CCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 117 NPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVY 196 (585)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 196 (585)
+.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.+++.+...++|..++|.++++
T Consensus 78 -------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (377)
T PRK11102 78 -------------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPK-------EEFSRMMSFVTLVMTIAPLLAPIIGGW 137 (377)
T ss_pred -------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999998 889999999999999999999999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 197 IQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 197 l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+.+..+|++.|++.++..++..++..+
T Consensus 138 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 138 LLVWFSWHAIFWVLALAAILAAALVFF 164 (377)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 999889999998877666555444433
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.3e-19 Score=186.89 Aligned_cols=387 Identities=10% Similarity=0.004 Sum_probs=227.0
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
..+......++...++....+.++.|+++++|+++.+.+++.+.+.+...++.++.|+++||+ ||||.++.+.+..+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~ 81 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLVL 81 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 345555667777777778888999999999999999999999999999999999999999996 9999998877766655
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
..........+.. .......+++.+++.|++.+...+....+..|..++ ++..++.
T Consensus 82 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---------~~~~~g~ 137 (396)
T TIGR00882 82 FAPFFIYVFGPLL---------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN---------SNFEYGK 137 (396)
T ss_pred HHHHHHHHhhhHH---------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh---------cccccch
Confidence 4433221100000 000233456778888888888888887777664222 2345666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCC
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPP 258 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 258 (585)
.....++|..+||.+++.+.+ .+|+..|++.+.+.++..++.+...++. ++++... +. .+. +
T Consensus 138 ~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------~~-~~~-~ 199 (396)
T TIGR00882 138 ARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA----PSSATVA-----------NA-LGA-N 199 (396)
T ss_pred hhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC----chhhhhh-----------cc-ccc-c
Confidence 777789999999999998865 5999999887766655544443322211 1000000 00 000 0
Q ss_pred CcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 007910 259 TDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTIS- 337 (585)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 337 (585)
. + ..+.. +...+ .++ |.+...+.........+....
T Consensus 200 ~--------~------~~~~~---~~~~~-------------------------l~~-~~~~~~~l~~~~~~~~~~~~~~ 236 (396)
T TIGR00882 200 A--------S------AFSLK---LALEL-------------------------FRQ-RKFWMFVLYVVGVACVYDVFDQ 236 (396)
T ss_pred c--------C------CCCHH---HHHHH-------------------------HcC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00000 00000 000 111111111111111111111
Q ss_pred c-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 007910 338 Q-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMA 416 (585)
Q Consensus 338 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~ 416 (585)
+ +.+ ... .......+ . ...+.......+...+...+ ..++.+|.++| +.+.++..+.++++.
T Consensus 237 ~~~~y-~~~--~~~~~~~~--~-~~~g~~~~~~~i~~~~~~~~----~g~l~~r~g~~-------~~l~~~~~l~~l~~~ 299 (396)
T TIGR00882 237 QFANF-FTS--FFATPQQG--T-RVFGYVTTMGELLNALIMFC----APLIINRIGAK-------NALLIAGTIMSVRII 299 (396)
T ss_pred HHHHH-HHH--hccccccc--h-HHHHHHHHHHHHHHHHHHHH----HHHHHHHhccc-------hhHHHHHHHHHHHHH
Confidence 1 222 111 11110000 0 00122222233333333332 34566776665 566777776666655
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHH-HHHHHHHHH
Q 007910 417 VAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVAL-LSLGMAVGN 495 (585)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ig~ 495 (585)
...... +.+++.+..++.+++..........+..+..|++.+++..+. ++....+|+
T Consensus 300 ~~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~ 357 (396)
T TIGR00882 300 GSSFAT----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAM 357 (396)
T ss_pred HHHhcC----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHH
Confidence 433322 334455566777877776666777778788899999887776 678899999
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 496 LVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFI 546 (585)
Q Consensus 496 ~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~ 546 (585)
.+++.+.+.+.+.. +|+..|.+.+++.++.+++..
T Consensus 358 ~~~~~l~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~ 392 (396)
T TIGR00882 358 IFLSTLAGNMYDSI----------------GFQGAYLVLGCIVLLFTLISV 392 (396)
T ss_pred HHHHHhHHHHHHhc----------------ccHHHHHHHHHHHHHHHHHHH
Confidence 99999988877543 256778888888777766543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-18 Score=185.09 Aligned_cols=397 Identities=11% Similarity=0.070 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCc-hHHHHHHHHHHHHHHH
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGR-FRVIALGTFTALLGMI 100 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-r~~l~~~~~~~~~g~~ 100 (585)
.+.+..++..+++-...++++.|+.+++|++..+.+++.+++.++..+++++.|+++||+ || |+++.++.++.+++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~ 84 (418)
T TIGR00889 6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF 84 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence 345556666667777779999999999999999999999999999999999999999996 65 7788887777777776
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCC-CCcchhhhhHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPD-NPNNERILQTFFNWY 179 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~ 179 (585)
+..+.. +.+.+++.|++.+++.+...+...++..+...+.. +..+...|.+.++
T Consensus 85 ~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G-- 139 (418)
T TIGR00889 85 FAAQVT-----------------------TPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG-- 139 (418)
T ss_pred HHHHhc-----------------------CHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh--
Confidence 666544 56778888888888877776666555332221000 0000011223332
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCC
Q 007910 180 YASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPT 259 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 259 (585)
.+|.++||.+++.+.....|. +|++.++..++..++.+. .++.++.+.+++ .+..+ .
T Consensus 140 ----~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~--~~~~~--------~------- 196 (418)
T TIGR00889 140 ----TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTAK--MSIKV--------M------- 196 (418)
T ss_pred ----hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCccccc--cCHHH--------H-------
Confidence 478888898888874433344 455555444443333222 222111000000 00000 0
Q ss_pred cccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-
Q 007910 260 DADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ- 338 (585)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 338 (585)
.+. +...+.. +.+.....+..++........+..
T Consensus 197 -----------------~~~---~~~~~~k-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (418)
T TIGR00889 197 -----------------LGL---DAFILFK-------------------------NKRMAIFFFFSMLLGAPLQITNIFG 231 (418)
T ss_pred -----------------hhh---hHHHHhc-------------------------CCCeeeHHHHHHHHHhHHHHHHHhH
Confidence 000 0000000 000000011111111111111111
Q ss_pred cchhhhhhcccccccCCcccc-cCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 007910 339 YTFPQLQAKSMDRHIFSEKLK-IPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAV 417 (585)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~ 417 (585)
+.+ ... .+.+.....+ +. ...+....+..+..++...+ ..++.+|+++| +.+.++.++.++++..
T Consensus 232 ~~~-~~~-~g~~~~~~~~-~~~~~~g~~~~~~~i~~i~~~~~----~g~l~dr~g~r-------~~l~~~~~~~~v~~~l 297 (418)
T TIGR00889 232 NGF-LHE-FGRNPEFADS-FVVKNASIWMSLSQFSEIFFILT----IPFFLKRFGIK-------KVMLLSLVAWALRFGF 297 (418)
T ss_pred HHH-HHH-hcccccccch-hhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHhCcH-------HHHHHHHHHHHHHHHH
Confidence 111 111 0111000000 00 00112222233333333333 44566776655 7778888777777655
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHH-HHHHHHHH
Q 007910 418 AALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLS-LGMAVGNL 496 (585)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~ 496 (585)
+..... ...+...++...++.++++++..+....++.+.+|++.||+++|+.+ ...++|..
T Consensus 298 ~~~~~~------------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~ 359 (418)
T TIGR00889 298 FAYGDP------------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSL 359 (418)
T ss_pred HHHcCc------------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHH
Confidence 544220 01123345556788899999999999999999999999999999997 67889999
Q ss_pred HHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 007910 497 VGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYGS 554 (585)
Q Consensus 497 ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~ 554 (585)
+|+.+.+.+.+..+..+. .+|+..|.+.+++.+++++.++++.++.++
T Consensus 360 iGp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 360 LGYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999988765542111 135778888888888888887877765543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-18 Score=185.21 Aligned_cols=178 Identities=11% Similarity=0.066 Sum_probs=138.2
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhccc-----CchHH-
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFL-----GRFRV- 87 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-----Grr~~- 87 (585)
+.++|+.+.+++..+...+..+.....++.++.+ .|.+..+.+....+. .. +++.++.|.++|| + ||||.
T Consensus 8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr-~~~~~~Grrr~~ 83 (491)
T PRK11010 8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDR-YTPPFLGRRRGW 83 (491)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHc-ccccCCCCchHH
Confidence 4456667777777777777777777778888654 599998888762222 22 3688999999999 5 99986
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCc
Q 007910 88 IALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPN 167 (585)
Q Consensus 88 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 167 (585)
+.++.+...++...+++.. | ..+.+.+.+.+++.+++.+...+...++..|++|+
T Consensus 84 ll~~~i~~~~~~~~~a~~~--~------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~----- 138 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLE--P------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPA----- 138 (491)
T ss_pred HHHHHHHHHHHHHHHHHcC--C------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----
Confidence 5566666666666666543 1 12677888899999999999999999999999998
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHHH
Q 007910 168 NERILQTFFNWYYASVGLSYMASITLIVYIQD-KAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 168 ~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~-~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
++|+++.++...+.++|.++++.+++++.+ ..|||..|++.+++.++..+..+
T Consensus 139 --~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~ 192 (491)
T PRK11010 139 --EERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL 192 (491)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988 57999999987766655544433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=186.96 Aligned_cols=354 Identities=12% Similarity=0.133 Sum_probs=213.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc---cCchH-HHHHHHHHHHHHHHHHHH
Q 007910 29 FEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF---LGRFR-VIALGTFTALLGMILLWL 104 (585)
Q Consensus 29 ~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~-~l~~~~~~~~~g~~~~~~ 104 (585)
...+.+..+..+++.|+++++|+++.+++.+..+..+...+..|+.|+++||. +|||| .++.+...+.++.+++..
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~ 89 (437)
T TIGR00792 10 GNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT 89 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh
Confidence 34455556667899999999999999999999999999999999999999982 38855 566777777777777765
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVG 184 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (585)
..+... ......+++.+++.+++.+...+...++..|..+++ ++|++..++...+.+
T Consensus 90 ~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~R~~~~~~~~~~~~ 146 (437)
T TIGR00792 90 TPDFSA-----------------TGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP------RERESLSTFRRFGAT 146 (437)
T ss_pred CCCCCc-----------------chHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH------HHHHHHHHHHHHHHH
Confidence 331110 113566777788888888888888888899988642 788899999888888
Q ss_pred HHHHHHHHHHHHhh-------cccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCC
Q 007910 185 LSYMASITLIVYIQ-------DKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLP 257 (585)
Q Consensus 185 ig~~~g~~~~~~l~-------~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 257 (585)
+|..+++.+.+.+. +..+|++.+.+.+++.++.....+...++.+++.+.+++
T Consensus 147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~-------------------- 206 (437)
T TIGR00792 147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIE-------------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccc--------------------
Confidence 88877766655543 245799888777666555544433322221100000000
Q ss_pred CCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 258 PTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTIS 337 (585)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (585)
++.+..+. + +.....|.+...+.. ..+.+..+.
T Consensus 207 -------------------~~~~~~~~--------------------~-----~~l~~~~~~~~~~~~---~~~~~~~~~ 239 (437)
T TIGR00792 207 -------------------KKLSLKQI--------------------F-----KALFKNDQLLILCLA---YLFYNLAFN 239 (437)
T ss_pred -------------------cCCCHHHH--------------------H-----HHHhCCHHHHHHHHH---HHHHHHHHH
Confidence 00000000 0 000000112111111 111111111
Q ss_pred c-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 007910 338 Q-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMA 416 (585)
Q Consensus 338 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~ 416 (585)
. .....+... ...+.. ...+.+.....+..++..++ ..++.+|+++| +.+.++..+.+++++
T Consensus 240 ~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~i~~ii~~~~----~~~l~~r~g~~-------~~~~~~~~~~~~~~~ 302 (437)
T TIGR00792 240 IKNGVQVYYFT---YVLGDP---ELFSYMGSIAIVAGLIGVLL----FPRLVKKFGRK-------ILFAGGILLMVLGYL 302 (437)
T ss_pred HHcchhheeEe---eecCCh---HHHHHHHHHHHHHHHHHHHH----HHHHHHHhCcH-------HHHHHHHHHHHHHHH
Confidence 1 111111110 001100 00112223334444444444 34556676655 667777777766665
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCC-------cchhhHHHHHHHH
Q 007910 417 VAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFP-------KTMSSIGVALLSL 489 (585)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~~ 489 (585)
.+.... .+...+++..++.+++.+...+..++++.+..| ++.+|.+.|++++
T Consensus 303 ~~~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 361 (437)
T TIGR00792 303 IFFFAG---------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTF 361 (437)
T ss_pred HHHHcc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHH
Confidence 544322 122334556677788888888888888877655 5678999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 007910 490 GMAVGNLVGSLIVTILNRVTG 510 (585)
Q Consensus 490 ~~~ig~~ig~~l~~~i~~~~~ 510 (585)
...+|..+++.+.+.+.+..|
T Consensus 362 ~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 362 VRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999877655
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=209.19 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=126.5
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChh--hHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGP--EGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~--~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
.+.....++..++..++..+....+..++...++.+.. ..+++.+++.+...++.+++|+++||+ |||++++++.++
T Consensus 8 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~ 86 (1146)
T PRK08633 8 IIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLF 86 (1146)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHH
Confidence 34555556666666666666666666777666776543 468888999999999999999999997 999999998877
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
.+++.++..++.. ..+++.+++.|+++|++.+...++..+++.|++|+ ++|++
T Consensus 87 ~~~~~~~~~~~~~--------------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~ 139 (1146)
T PRK08633 87 EVGLTLLIVLAYY--------------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK-------ENLSR 139 (1146)
T ss_pred HHHHHHHHHHHHH--------------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc-------ccchh
Confidence 6666655544320 01578899999999999999999999999999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDK 200 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~ 200 (585)
++++...+.++|.++|+.+++++.+.
T Consensus 140 ~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 140 ANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998775
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=184.79 Aligned_cols=144 Identities=12% Similarity=0.073 Sum_probs=115.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLT 105 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~ 105 (585)
.-++..+... ....+...+++++|+++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++++++.+++..+
T Consensus 34 ~~~~~~~~~~-~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~~l~~~~ 111 (438)
T PRK10133 34 LFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGAALFWPA 111 (438)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 334444556899999999999999999999999999999999997 99999999999999999776422
Q ss_pred hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007910 106 AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185 (585)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 185 (585)
. . ..+++.++++|+++|+|.|...+..++++.|..|+ ++|.+..+.+.....+
T Consensus 112 ~-~-------------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~-------~~~~~~~s~~~~~~~~ 164 (438)
T PRK10133 112 A-E-------------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------SSGHFRLNLAQTFNSF 164 (438)
T ss_pred H-h-------------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCh-------hhHHHHHHHHHHHHHH
Confidence 1 0 11688899999999999999999999999987655 5555567888888889
Q ss_pred HHHHHHHHHHHhh
Q 007910 186 SYMASITLIVYIQ 198 (585)
Q Consensus 186 g~~~g~~~~~~l~ 198 (585)
|..+||.+++.+.
T Consensus 165 G~~~g~~~g~~l~ 177 (438)
T PRK10133 165 GAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876543
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-18 Score=179.66 Aligned_cols=354 Identities=11% Similarity=0.026 Sum_probs=207.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCch----HHHHHHHHHHHHHHHHHHH
Q 007910 29 FEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRF----RVIALGTFTALLGMILLWL 104 (585)
Q Consensus 29 ~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr----~~l~~~~~~~~~g~~~~~~ 104 (585)
...+++....+.++.|+ +++|.|..+.+++.+++.+...++.++.|.++||+ ||+ +.+.++.++.. ......
T Consensus 15 ~~~~~~g~~~p~l~~~l-~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~--~~~~~~ 90 (382)
T PRK11128 15 GYFFAYGVFLPFWSVWL-KGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLFA--VAFWFG 90 (382)
T ss_pred HHHHHHHHHhhhHHHHH-HhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHHH--HHHHHh
Confidence 33445555667788888 55799999999999999999999999999999996 984 33322222211 111111
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVG 184 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (585)
. ++.+.+++.|++.|++.+...|...++..+. . ++|++.++......+
T Consensus 91 ~-----------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~-------~~~~~a~~~~~~~~~ 138 (382)
T PRK11128 91 A-----------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--Q-------KQIGLDYGKVRLWGS 138 (382)
T ss_pred c-----------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--H-------hhccCCcchHHHHHH
Confidence 1 2678888999999999999999888877765 2 334556777777889
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCccccc
Q 007910 185 LSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRW 264 (585)
Q Consensus 185 ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 264 (585)
+|..+||.+++++.+++|||..|++.++..++..+..+ ..++ .++++++.+ +.
T Consensus 139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~-----------------~~------ 191 (382)
T PRK11128 139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPT---IMPQGESRQ-----------------QE------ 191 (382)
T ss_pred HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCC---CCCcccccc-----------------cc------
Confidence 99999999999999999999999876654443333222 2211 111100000 00
Q ss_pred ccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHH-HHHHHHHHHHhhcccchhh
Q 007910 265 YYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLP-IWSSGIMIAVTISQYTFPQ 343 (585)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 343 (585)
.+.. ..+ +.....|.+...+. .++........+.....+.
T Consensus 192 ----------~~~~------------------------~~~-----~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 232 (382)
T PRK11128 192 ----------SAGW------------------------PAW-----KALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW 232 (382)
T ss_pred ----------cccc------------------------chH-----HHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 0000 000 00000011211111 1111111111111111111
Q ss_pred hhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 007910 344 LQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVER 423 (585)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~ 423 (585)
.+ .+.+.. ..+.....+.+..++...+ ..++.+|+ +.++.+..+.++.+++++.+...+
T Consensus 233 ~~-~g~s~~--------~~g~~~~~~~~~~~~~~~~----~g~l~~r~-------~~~~~l~~~~~~~~~~~~~~~~~~- 291 (382)
T PRK11128 233 QA-AGYSAS--------TIGYLWSLGVVAEVLIFAF----SNRLFRRW-------SARDLLLLSAICGVVRWGLMGSTT- 291 (382)
T ss_pred HH-CCCCHh--------HHHHHHHHHHHHHHHHHHH----HHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 11 111110 1122222333333333222 23344454 444777778777777766554433
Q ss_pred HHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHH-HHHHHHHHHHHHHH
Q 007910 424 KRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLS-LGMAVGNLVGSLIV 502 (585)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~ig~~l~ 502 (585)
+.+.+++..++.++++....+....+..+. |++.+++.+++++ +...+|..+|+.+.
T Consensus 292 ---------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~ 349 (382)
T PRK11128 292 ---------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLS 349 (382)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566678888999999999999998887 5556789999886 65677888999998
Q ss_pred HHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHH
Q 007910 503 TILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFY 544 (585)
Q Consensus 503 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~ 544 (585)
|.+.+..+ + ..|+..+++.++++++
T Consensus 350 G~l~~~~g----------------~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 350 GFLYQHLG----------------A-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHhcc----------------H-HHHHHHHHHHHHHHHH
Confidence 88765432 1 3466666666655443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-18 Score=191.69 Aligned_cols=416 Identities=13% Similarity=0.097 Sum_probs=241.0
Q ss_pred hHHHHHHHHHHHHh-----CCCh--hhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 007910 36 GLHANMIFYLILEY-----HMSG--PEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAII 108 (585)
Q Consensus 36 ~~~~~~~~yl~~~l-----~~s~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~ 108 (585)
+..+.+..++.+.. ..+. .+.+++.++..++..++.++.|+++|++ |||++++++.+++.+|.++++++.
T Consensus 64 g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~-- 140 (513)
T KOG0254|consen 64 GGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAP-- 140 (513)
T ss_pred ccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhh--
Confidence 55566666665532 2222 3458999999999999999999999996 999999999999999999999987
Q ss_pred CCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 007910 109 PAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYM 188 (585)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 188 (585)
+..+++++|++.|+|.|+...+.+.+++|..|+ +.|+...+.+++..++|..
T Consensus 141 ---------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~-------~~RG~l~~~~~l~~~~Gi~ 192 (513)
T KOG0254|consen 141 ---------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAPA-------HIRGTLVSLYQLFITIGIL 192 (513)
T ss_pred ---------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCCh-------hhhHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHHhC--ccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccc
Q 007910 189 ASITLIVYIQDK-AGWVVGFGVPVGLMLFSTVMFLLGS--SLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWY 265 (585)
Q Consensus 189 ~g~~~~~~l~~~-~g~~~~f~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 265 (585)
++..++....+. .+||..+.+..+..++..+.+++.+ |++..+ ++ ...+..+. ....+... ..+
T Consensus 193 ~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~--~g-~~~~a~~~-l~~l~g~~---~~~------ 259 (513)
T KOG0254|consen 193 LGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIE--KG-RLEEAKRS-LKRLRGLS---PED------ 259 (513)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHH--cC-ChHHHHHH-HHHHhCCC---Ccc------
Confidence 996554444332 4899888887776666555543322 221111 11 11111111 11111100 000
Q ss_pred cccCCCcCCCCchhhhhh-h-hhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 007910 266 YYKGSKLTAPTEKLRFLN-R-ACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQ 343 (585)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~-~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (585)
..+..+... . .......++ ...|+.+.. ...+|+....+.+..++.+ ..++...+
T Consensus 260 ---------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~--~~~~~~~~i~~~l~~fqq~--tG~~~~~~-- 316 (513)
T KOG0254|consen 260 ---------VEVELELLKIKLLVEAEVAEG--------KASWGELFS--PKVRKRLIIGLLLQLFQQL--TGINYVFY-- 316 (513)
T ss_pred ---------hHHHHHHHHHHHHHhhhcccc--------cccHHHhcC--cchHHHHHHHHHHHHHHHH--hCCceEEe--
Confidence 000000000 0 000000000 001111111 1122333322332222221 22221000
Q ss_pred hhhcccccccCCcccccCC----CcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHH
Q 007910 344 LQAKSMDRHIFSEKLKIPP----GSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAA 419 (585)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~ 419 (585)
+....++. .+ ++.+. .....++.+..++ ...+.+|.||| ..+..|...+.+++.+++
T Consensus 317 Y~~~if~~-~g---~~~~~~~~~~~~~~v~~~~t~~--------~~~lvd~~gRr-------~lll~s~~~m~~~~~~~~ 377 (513)
T KOG0254|consen 317 YSTTIFKS-AG---LKSDTFLASIILGVVNFLGTLV--------ATYLVDRFGRR-------KLLLFGAAGMSICLVILA 377 (513)
T ss_pred ehHHHHHh-cC---CCCchHHHHHHHHHHHHHHHHH--------HHHHHHHhccH-------HHHHHhHHHHHHHHHHHH
Confidence 11111111 11 11111 1122222222222 24566787887 788888888888888777
Q ss_pred HHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHH
Q 007910 420 LVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGS 499 (585)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~ 499 (585)
........ +. + ......+..++...++...-.....+..+.+..+..|.+.|+.+.++....+++.+.+-.
T Consensus 378 ~~~~~~~~----~~---~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~ 448 (513)
T KOG0254|consen 378 VVGVFALY----YP---N--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS 448 (513)
T ss_pred HHHHHhcc----CC---C--cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence 65421100 00 0 001122222333333333333445555566777889999999999999999998888876
Q ss_pred HHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHH-HHHHHhcccCcccCCcccc
Q 007910 500 LIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFF-YFIACSWAYGSCEDIKVWD 562 (585)
Q Consensus 500 ~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~-~~~~~~~~~~~~~~~~~~~ 562 (585)
.....+....+ ....|+.++++..+... +.+.+.+|+|+++.+|..+
T Consensus 449 ~~~~~~~~~~~----------------~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~ 496 (513)
T KOG0254|consen 449 FFFPFITEALG----------------IGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINE 496 (513)
T ss_pred HHHHHHHHhcc----------------ccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHH
Confidence 66555442211 12456667777777766 7788899999986555444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-18 Score=205.20 Aligned_cols=136 Identities=10% Similarity=0.113 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH--HHHHHHHHHH-HhhhcCCCCCCCCCCCcccCCCCCcch
Q 007910 54 PEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF--TALLGMILLW-LTAIIPAARPPKCNPFIEICPAAKPRQ 130 (585)
Q Consensus 54 ~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~--~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (585)
...+++.+++.+...++.+++|+++||+ |||+++..... +...+..+.. ... +
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~~-----------------------s 107 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHLN-----------------------S 107 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------h
Confidence 3467778889999999999999999997 99998643222 2222222222 222 6
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 007910 131 LGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVP 210 (585)
Q Consensus 131 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~ 210 (585)
++.++++|+++|++.++..|+..+++.|++|+ ++|++++++.+.+.++|.++||.+++++.+..+|++.|...
T Consensus 108 ~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~-------~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 108 VPLLFAALFLMGIHSALFGPIKYSILPDHLNK-------DELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHhhHhhcCc-------cccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 78899999999999999999999999999999 78899999999999999999999999999999999998444
Q ss_pred HHHHHHHHHH
Q 007910 211 VGLMLFSTVM 220 (585)
Q Consensus 211 ~~~~~i~~~~ 220 (585)
++..++++++
T Consensus 181 ~~~~~~~~~~ 190 (1140)
T PRK06814 181 MGIAVLGWLA 190 (1140)
T ss_pred HHHHHHHHHH
Confidence 4444443333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-18 Score=178.45 Aligned_cols=156 Identities=12% Similarity=0.107 Sum_probs=115.6
Q ss_pred HHHHHHHHHhC--CChhhHHHHHHHH-----HHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 007910 40 NMIFYLILEYH--MSGPEGANVLFLW-----GAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAAR 112 (585)
Q Consensus 40 ~~~~yl~~~l~--~s~~~~~~i~~~~-----~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~ 112 (585)
....++.+++. .++.+.+.+.+.. .+...++.++.|+++||+ ||||+++++.++..++.+++.++.+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~- 91 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATI- 91 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhh-
Confidence 45566666643 4455555444332 223346789999999996 99999999999999999888876522110
Q ss_pred CCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 007910 113 PPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASIT 192 (585)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 192 (585)
.......+++.|+++|++.+...+..+++++|.+|+ ++|++..+..+.+..+|..+++.
T Consensus 92 --------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~ 150 (394)
T TIGR00883 92 --------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP-------GKRGFYGSFQQVGAPVGLLLAAL 150 (394)
T ss_pred --------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc-------ccchHHHHHHHHHHHHHHHHHHH
Confidence 000123588999999999999999999999999998 78899999999999999999988
Q ss_pred HHHHhh--------cccchhHHHHHHHHHHHHHH
Q 007910 193 LIVYIQ--------DKAGWVVGFGVPVGLMLFST 218 (585)
Q Consensus 193 ~~~~l~--------~~~g~~~~f~~~~~~~~i~~ 218 (585)
++..+. +..+||+.|++.++..++..
T Consensus 151 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 184 (394)
T TIGR00883 151 TVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL 184 (394)
T ss_pred HHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence 776653 35689999987766554443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-18 Score=171.47 Aligned_cols=391 Identities=13% Similarity=0.036 Sum_probs=257.1
Q ss_pred cCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHH
Q 007910 13 KKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGT 92 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~ 92 (585)
++.++|.+++.... +...+....+.+.+..++.+++|+|+.|.+++..+-.+...+..++-|.+.||+ |.|+....+.
T Consensus 9 k~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~ 86 (417)
T COG2223 9 KRIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSM 86 (417)
T ss_pred ccchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHH
Confidence 34555655555443 333455555667888899999999999999999999999999999999999996 9999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 93 FTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
++..+-.+..+++...| +++.+++.+.++|++.+- .....++++.+||+ +++
T Consensus 87 ~l~~IP~~~~~~a~~~~--------------------~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~-------~~q 138 (417)
T COG2223 87 LLLLIPCLGLAFAVTYP--------------------STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPK-------EKQ 138 (417)
T ss_pred HHHHHHHHHHHHHccCC--------------------chHHHHHHHHHHhcccce-ehcccccccccCCh-------hhh
Confidence 99999988888877333 457899999999998766 56778899999999 788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHH
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAG---WVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAW 249 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (585)
+.+.+++. ..|+|..+..++++++....+ |+..-.+..+.+++..++.++..++.++.+++.++...
T Consensus 139 G~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~--------- 208 (417)
T COG2223 139 GLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLP--------- 208 (417)
T ss_pred hHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccch---------
Confidence 99999999 999999999999999999888 99888888777777667666665543322111111000
Q ss_pred hhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 007910 250 KNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSG 329 (585)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (585)
++ .+.+...|+......+....
T Consensus 209 ---------------------------~~-------------------------------~~~v~~~~~~W~lsllY~~t 230 (417)
T COG2223 209 ---------------------------AQ-------------------------------LKAVFSNKDTWLLSLLYFAT 230 (417)
T ss_pred ---------------------------hH-------------------------------HHHHhcCcchHHHHHHHHHH
Confidence 00 00001011122222233333
Q ss_pred HHHHHhhcc--cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHH
Q 007910 330 IMIAVTISQ--YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIG 407 (585)
Q Consensus 330 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g 407 (585)
...++.+.. +.++..+ ...+. ...+.+....++...+.-|+ -..+.||+|.+ +.+.+.
T Consensus 231 FG~Fvgfs~~l~~~~~~~-fg~~~--------~~Ag~~a~~f~~~g~l~Rp~----GG~LsDR~Gg~-------rv~~~~ 290 (417)
T COG2223 231 FGGFVGFSAYLPMYLVTQ-FGLSP--------VTAGLIAFLFPLIGALARPL----GGWLSDRIGGR-------RVTLAV 290 (417)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCCh--------hhHHHHHHHHHHHHHHHHhc----cchhhhhccch-------hHHHHH
Confidence 333333333 2221111 11111 12233444445555555555 45567777666 677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHH
Q 007910 408 LAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL 487 (585)
Q Consensus 408 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 487 (585)
+..++++....+..... +. ...+....+..++.+++..+.-.-+++..+....|+ +.|...|+.
T Consensus 291 f~~~~~~~~~l~~~~~~------------~~---~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~v 354 (417)
T COG2223 291 FVGMALAAALLSLFLTG------------FG---HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIV 354 (417)
T ss_pred HHHHHHHHHHHHccccc------------cc---cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHH
Confidence 77777776666554300 00 112333333334444444444445555666666654 678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 007910 488 SLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAY 552 (585)
Q Consensus 488 ~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~ 552 (585)
....++|+++-|...+...+.+| .+...|+++....+++.+..+....+.
T Consensus 355 ga~G~lGGf~lp~~~g~~~~~tg---------------~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 355 GAIGGLGGFFLPLAFGVSLDLTG---------------SYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred HHhccccccchhHHHHHHHHhcc---------------cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888898888888887765554 356778888888888888777765433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-18 Score=178.31 Aligned_cols=159 Identities=13% Similarity=0.069 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+..+...++.....+...+.++.++.+++|+|+.+.+++.+++.++..++.++.|+++||+ |||+.++++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence 34455555555666666666666678999999999999999999999999999999999996 99999999999999998
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
+++.++. .+++.+++.|+++|++.+. .+...++++|.+|+ ++|++..+++
T Consensus 82 ~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~-------~~r~~~~~~~ 131 (366)
T TIGR00886 82 LWAGLAV----------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPK-------KIQGTALGLA 131 (366)
T ss_pred HHHHHHh----------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCH-------hhhhHHHHHH
Confidence 8887653 0467788999999999665 45678899999998 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc----------ccchhHHHHH
Q 007910 180 YASVGLSYMASITLIVYIQD----------KAGWVVGFGV 209 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~----------~~g~~~~f~~ 209 (585)
....++|..+++.+++.+.. ..+||+.|++
T Consensus 132 ~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 132 AGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 88888888888777766554 2489999844
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=174.93 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=123.9
Q ss_pred HhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 007910 33 AGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAAR 112 (585)
Q Consensus 33 ~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~ 112 (585)
.++.....+...+.+++|+++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++.+++.+.. ...
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~------ 85 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAP------ 85 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhc------
Confidence 3333344555667889999999999999999999999999999999996 99999999998888777665 433
Q ss_pred CCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 007910 113 PPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASIT 192 (585)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 192 (585)
+.+.+++.|++.|+|.+...+..+.++.|.+| ++|+++++.++.+.++|..+++.
T Consensus 86 -----------------~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~g~~i~~~ 140 (355)
T TIGR00896 86 -----------------GTALLFAGTALIGVGIAIINVLLPSLIKRDFP--------QRVGLMTGLYSMALMGGAALAAA 140 (355)
T ss_pred -----------------cHHHHHHHHHHHHHHHHHHhccchHHHHHhCc--------chhhHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999988888888888875 45788999999999999999999
Q ss_pred HHHHhhccc--chhHHHHHHHHHHH
Q 007910 193 LIVYIQDKA--GWVVGFGVPVGLML 215 (585)
Q Consensus 193 ~~~~l~~~~--g~~~~f~~~~~~~~ 215 (585)
+++.+.+.. +||+.|.+.++..+
T Consensus 141 ~~~~l~~~~~~~w~~~f~~~~~~~~ 165 (355)
T TIGR00896 141 ATVPLAQHSGGHWQQALAWWALPAL 165 (355)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 988887754 38988876554433
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-16 Score=165.29 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=125.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc----cCchH-HHHHHHHHHHHHHHHH
Q 007910 28 AFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF----LGRFR-VIALGTFTALLGMILL 102 (585)
Q Consensus 28 ~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~----~Grr~-~l~~~~~~~~~g~~~~ 102 (585)
+...+.+......++.|+++ .|+|.++.+++..+... .+..++.|+++||+ +|||| .+.++.++.+++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l 85 (402)
T PRK11902 9 FASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM 85 (402)
T ss_pred HHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence 33444445555778888875 49999999998766665 69999999999994 17776 6777777777777766
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
.+.. + ..+.+.+++..++.++..+...++..+++.|.+|+ ++|+++.++...+
T Consensus 86 ~~~~--~------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~-------~~r~~~~~~~~~g 138 (402)
T PRK11902 86 AFCP--P------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP-------EERGAGAAVKVLG 138 (402)
T ss_pred HhcC--c------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-------hhhhHHHHHHHHH
Confidence 6542 0 11456677777778888888899999999999998 8899999999999
Q ss_pred HHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHH
Q 007910 183 VGLSYMASITLIVYIQDK-AGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 183 ~~ig~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~i~~~ 219 (585)
.++|..+++.+++++.+. .|||..|++.++..++..+
T Consensus 139 ~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l 176 (402)
T PRK11902 139 YRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGAL 176 (402)
T ss_pred HHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999888875 5999999987766554443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-16 Score=170.00 Aligned_cols=155 Identities=12% Similarity=0.090 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007910 36 GLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPK 115 (585)
Q Consensus 36 ~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 115 (585)
++...+...+++++|+++.+.+++.+.+.++..++.++.|++.||+ |||++++++.++++++.+++..+..
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~l~~~~~~-------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAFLFWPAAE-------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 4555666777999999999999999999999999999999999996 9999999999999999877654330
Q ss_pred CCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007910 116 CNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIV 195 (585)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 195 (585)
..+++.+++.|++.|+|.|...+..++++.+..|+ ++|++..++.+...++|..+||.+++
T Consensus 91 ------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 91 ------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPE-------STATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred ------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12678899999999999999999999999999888 67788889999999999999999988
Q ss_pred Hhhcc--------------------------cchhHHHHHHHHHHHHHH
Q 007910 196 YIQDK--------------------------AGWVVGFGVPVGLMLFST 218 (585)
Q Consensus 196 ~l~~~--------------------------~g~~~~f~~~~~~~~i~~ 218 (585)
.+... .+||++|++.+++.++..
T Consensus 152 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 152 QLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76422 369999987666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=5e-16 Score=166.69 Aligned_cols=438 Identities=12% Similarity=-0.009 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhh----cccCchHHHHHH-HHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISD----SFLGRFRVIALG-TFTA 95 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Grr~~l~~~-~~~~ 95 (585)
..+..+.+-..+++-...++++.|+ +++|++..+.+.+..+..+...+..|+.|+++| |+ ||||.++++ ....
T Consensus 7 i~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~~~ 84 (477)
T TIGR01301 7 LRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHHHH
Confidence 3344444444566555566666664 789999999999999999999999999999999 56 999998875 5555
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCC-CcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAA-KPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
.++..+++++.+........ ..+. .....+.++++..+..++.....+...++++|.+|+++ ++++.
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~-------~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~-----~~~~~ 152 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDN-------LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDA-----RRTRI 152 (477)
T ss_pred HHHHHHHHhCchhhhhcccc-------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchh-----HHHHH
Confidence 55666666544222110000 0000 00011344555556667888888888999999999831 23367
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hccc-------------chhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcch
Q 007910 175 FFNWYYASVGLSYMASITLIVYI--QDKA-------------GWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFT 239 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l--~~~~-------------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
++++.....++|+.+|+.++++. .+.+ +.+..|++.+++.++...+..+..++.+..++++...+
T Consensus 153 a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~ 232 (477)
T TIGR01301 153 ANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS 232 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh
Confidence 89999999999999999988764 2211 56888988887777766665554443221110000000
Q ss_pred hHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHH
Q 007910 240 GFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAI 319 (585)
Q Consensus 240 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (585)
+. +..++ ..+. ..++.+-+.....=|.+
T Consensus 233 ---------------~~--------~~~~~-----~~~~------------------------~~~~~i~~~~~~mP~~m 260 (477)
T TIGR01301 233 ---------------EA--------APPSK-----HGEE------------------------AFFGELFGAFKYLPRPV 260 (477)
T ss_pred ---------------hc--------ccccc-----cchh------------------------hhHHHHHHHHHHCCHHH
Confidence 00 00000 0000 00000000000000122
Q ss_pred HHHHHHHHHHHHHHHhhcc-cchhhhhhcc-cccccCCcccccC---CCcccchhHHHHHHHHHHhhhhhhhccccccCC
Q 007910 320 IKVLPIWSSGIMIAVTISQ-YTFPQLQAKS-MDRHIFSEKLKIP---PGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNR 394 (585)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r 394 (585)
.+.+....+..+-|..+.. .|-++-+.-. -+... ...++-- ..+....+.+... +...+..++.+|.++|
T Consensus 261 ~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~-~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g~~ 335 (477)
T TIGR01301 261 WILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQ-GAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWGAG 335 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcc-hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccc
Confidence 2333333333333333333 2322221100 00000 0000000 0111222233323 2233345556666543
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC--ccccch-hhhHHHHHHHHHHHHHHHhhhhHHHh
Q 007910 395 PRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPE--GVVALT-AMWLVPQNCLIGLAEAFNAIGQIEFY 471 (585)
Q Consensus 395 ~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~i~~~~l~g~g~~~~~~~~~~~~ 471 (585)
+..-.++.++.++++....+... .+...+-.|+.+ -.++.. .+..+..+.++|++-+.....+++.+
T Consensus 336 ------k~~~~~s~~~~~~~l~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~ 405 (477)
T TIGR01301 336 ------KRLWGIVNIILAICLAATVLVTY----VAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALA 405 (477)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHh----hhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHH
Confidence 13336777777777777665441 000000000000 001111 35566778899999999999999999
Q ss_pred hhcCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007910 472 YSQFPK--TMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACS 549 (585)
Q Consensus 472 ~~~~P~--~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~ 549 (585)
.+..|+ +..|..+|+.|....+...+.....+.+....|++ -...+.+.++..+++.+..++..
T Consensus 406 s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~--------------~~~~~~~~gv~~~~aa~~~~~~~ 471 (477)
T TIGR01301 406 SIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGG--------------NLPAFVVGAVAAFVSGLLALILL 471 (477)
T ss_pred HHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCC--------------CeeHHHHHHHHHHHHHHHHHHhC
Confidence 999995 45599999999999999999988777766555421 13456677777777777777766
Q ss_pred cccC
Q 007910 550 WAYG 553 (585)
Q Consensus 550 ~~~~ 553 (585)
++.+
T Consensus 472 ~~~~ 475 (477)
T TIGR01301 472 PRPR 475 (477)
T ss_pred CCCC
Confidence 6554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.7e-17 Score=169.14 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc----cCchHHH-HHHHHHHHHHHHHHHHhhhcCC
Q 007910 36 GLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF----LGRFRVI-ALGTFTALLGMILLWLTAIIPA 110 (585)
Q Consensus 36 ~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~----~Grr~~l-~~~~~~~~~g~~~~~~~~~~~~ 110 (585)
++.......+.+++|+|.++.++.... .+...+ .++.|.++||+ +||||.+ +.+.++..+....+.+...
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~--- 79 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP--- 79 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---
Confidence 344545555677889999999988655 333333 88999999995 3899975 5566666666555554320
Q ss_pred CCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 007910 111 ARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMAS 190 (585)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 190 (585)
..+.+.+....++.+++.+...+...+++.|++|+ ++|+++.++...+.++|.+++
T Consensus 80 -----------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~-------~~r~~~~~~~~~~~~~G~~~~ 135 (356)
T TIGR00901 80 -----------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSD-------EELGYGSTIYIVGYRAGMLLS 135 (356)
T ss_pred -----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhchHHHHHHHHHHHHHHHH
Confidence 11455666677778888888889999999999998 889999999999999999999
Q ss_pred HHHHHHhhcccc--------hhHHHHHHHHHHHHHHHHHH
Q 007910 191 ITLIVYIQDKAG--------WVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 191 ~~~~~~l~~~~g--------~~~~f~~~~~~~~i~~~~~~ 222 (585)
+.+++++....+ ||..|++.++..++.....+
T Consensus 136 ~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 136 GSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999988888 99999888776665544433
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-17 Score=170.00 Aligned_cols=157 Identities=14% Similarity=0.071 Sum_probs=137.6
Q ss_pred hHHHHHHHHHHHHhCCChhh-HHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007910 36 GLHANMIFYLILEYHMSGPE-GANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPP 114 (585)
Q Consensus 36 ~~~~~~~~yl~~~l~~s~~~-~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 114 (585)
...+++..|+.+++|+++.+ .+.+.+++..++.++.+++|+++||+ |.|+++.++.+.+.+..++.+++.
T Consensus 43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~-------- 113 (511)
T TIGR00806 43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGT-------- 113 (511)
T ss_pred chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHH--------
Confidence 34466788999999999999 99999999999999999999999996 999999999999999999999877
Q ss_pred CCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 115 KCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194 (585)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 194 (585)
+...+.+.|++.|++.|... +...++..++|+ ++|+++.+++..+.++|.++++.++
T Consensus 114 ---------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~-------kER~ratsi~~sg~~vG~~Ia~~L~ 170 (511)
T TIGR00806 114 ---------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP-------SRYQRAAAYSRAAVLLGVFLSSVLG 170 (511)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999 999999999999 9999999999999999999999999
Q ss_pred HHhhcccchhHHHH---HHHHHHHHHHHHHHHhC
Q 007910 195 VYIQDKAGWVVGFG---VPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 195 ~~l~~~~g~~~~f~---~~~~~~~i~~~~~~~~~ 225 (585)
+++ .++||++-+. +......+++++.++.+
T Consensus 171 qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 171 QLL-VTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 994 4678886443 44455555655555544
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-15 Score=165.27 Aligned_cols=150 Identities=11% Similarity=0.146 Sum_probs=102.2
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc---cCchHHH-HHHHHHHHHHHH
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF---LGRFRVI-ALGTFTALLGMI 100 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~l-~~~~~~~~~g~~ 100 (585)
+.++.....+.....++..|+++.+|++..+++.+.....+...+..++.|+++||. +||||.. +++.+...+...
T Consensus 15 ~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~ 94 (448)
T PRK09848 15 LGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSV 94 (448)
T ss_pred cchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHH
Confidence 355566666666777888999999999999999999999999999999999999993 2777755 455554444443
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
++.. . |.-. .........++..++.+++.++..+...++..+..+++ ++|.+..++..
T Consensus 95 ~~~~-~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~~r~~~~~~r~ 152 (448)
T PRK09848 95 LVFW-V--PTDW-------------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQP------QSRARLGAARG 152 (448)
T ss_pred HHHh-C--cCCC-------------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCH------HHHHHHHHHHH
Confidence 3321 1 1100 00112344555667788888888888888888877763 56777766655
Q ss_pred HHH-----HHHHHHHHHHHHH
Q 007910 181 ASV-----GLSYMASITLIVY 196 (585)
Q Consensus 181 ~~~-----~ig~~~g~~~~~~ 196 (585)
++. +++..++|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~p~i~~~ 173 (448)
T PRK09848 153 IAASLTFVCLAFLIGPSIKNS 173 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 443 4555566666554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-16 Score=166.99 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=108.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhh----cccCchHH-HHHHHHHHHHHHH
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISD----SFLGRFRV-IALGTFTALLGMI 100 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Grr~~-l~~~~~~~~~g~~ 100 (585)
..+...+.+..+..+++.|+++.+|+++..++.+..+.-+...+..|+.|+++| |+ ||||- ++++.+..+++..
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSVVLF 92 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHHHHH
Confidence 344455666667788999999999999999999999999999999999999999 65 99555 5556666666655
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
++... |... .......+++..++.+++..+......++.+|+.+++ ++|.+..++..
T Consensus 93 llf~~---p~~~--------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~------~eR~~l~~~~~ 149 (473)
T PRK10429 93 LLFSA---HLFE--------------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDK------REREQLVPYPR 149 (473)
T ss_pred HHHcC---CCCC--------------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCH------HHHHHHHHHHH
Confidence 55432 2100 0113445566666778888888888899999998653 88899888877
Q ss_pred HHHHHHHHHHHHHHHH
Q 007910 181 ASVGLSYMASITLIVY 196 (585)
Q Consensus 181 ~~~~ig~~~g~~~~~~ 196 (585)
...++|+.+.+.+...
T Consensus 150 ~~~~ig~~~~~~~~~~ 165 (473)
T PRK10429 150 FFASLAGFVTAGFTLP 165 (473)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7778876666555443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.75 E-value=5e-15 Score=156.83 Aligned_cols=386 Identities=16% Similarity=0.148 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
+....++..+.+-...++++.|+++ .|+|..|+|.+.++..+...+.+++.|+++||...+||.+.+..++.++...+.
T Consensus 7 Ls~~~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~ 85 (400)
T PF03825_consen 7 LSLMYFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLL 85 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666888899865 589999999999999999999999999999997456777777666666555444
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
.... +++.+++..++..+......|...++.-+.....+. -++-....
T Consensus 86 ~~~~-----------------------~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~~---------~YG~iRlw 133 (400)
T PF03825_consen 86 AFSS-----------------------SFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRGK---------DYGRIRLW 133 (400)
T ss_pred HHhc-----------------------cHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccC---------CCCcchhh
Confidence 4433 455566666667777777777777776666553211 13333334
Q ss_pred HHHHHHHHHHH-HHHhhcccc---hhHHHHHHHHHHHHHHHHHHHhCcccc-ccCCCCCcchhHHHHHHHHHhhcCCCCC
Q 007910 183 VGLSYMASITL-IVYIQDKAG---WVVGFGVPVGLMLFSTVMFLLGSSLYI-KPKANKVLFTGFGQVISAAWKNRHLPLP 257 (585)
Q Consensus 183 ~~ig~~~g~~~-~~~l~~~~g---~~~~f~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 257 (585)
+++|..++... ++++....+ ....+++.+...++.....+. .|+.+ +++.+++..+..
T Consensus 134 GSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~~~~~~~~---------------- 196 (400)
T PF03825_consen 134 GSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAKESVKKLL---------------- 196 (400)
T ss_pred hhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccCCCccccc----------------
Confidence 44555544322 222322222 234455544433322222222 22211 110000000000
Q ss_pred CCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHH-HHHHHHHHHHHHhh
Q 007910 258 PTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKV-LPIWSSGIMIAVTI 336 (585)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 336 (585)
..+. ++.+++ |++... +..++........+
T Consensus 197 -----------------------~~~~--------------------~~llk~------~~~~~Fll~~~l~~~~~~~~~ 227 (400)
T PF03825_consen 197 -----------------------GLDA--------------------LKLLKN------PRFLVFLLAAFLIGISHAAYY 227 (400)
T ss_pred -----------------------chHH--------------------HHHhcC------ccHHHHHHHHHHHHHHHHHHH
Confidence 0000 000000 111111 11111111112222
Q ss_pred cccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHH
Q 007910 337 SQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMA 416 (585)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~ 416 (585)
+..+.++.+..+.... ..+....+..+. |.....+.+|+-+| ++..+.+.++.+..++=..
T Consensus 228 ~f~~~yl~~~gg~~~~--------~~g~~~~l~~~a--------Ei~~f~~~~~~~~r---~g~~~ll~~a~~~~~vR~~ 288 (400)
T PF03825_consen 228 TFFSIYLQELGGYSGS--------TIGILWALGVVA--------EIPFFFFSGRFLKR---FGIKWLLLLALVAYAVRWL 288 (400)
T ss_pred HHHHHHHHHcccchhh--------HHHHHHHHHHHH--------HHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHH
Confidence 2222212111111111 011112222222 22222333444444 5666889999888888887
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHH-HHHHHH
Q 007910 417 VAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSL-GMAVGN 495 (585)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~-~~~ig~ 495 (585)
+++... | | ....+....+...+.|+..++...+...|+.+.+|++.|++++++++. ..++|+
T Consensus 289 l~a~~~-------------~-~---~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~ 351 (400)
T PF03825_consen 289 LYAYFS-------------D-P---WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGG 351 (400)
T ss_pred HHHHhc-------------C-C---cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHH
Confidence 777653 0 0 001112233344678999999999999999999999999999999874 578999
Q ss_pred HHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007910 496 LVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYG 553 (585)
Q Consensus 496 ~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~ 553 (585)
.+|..+.|.+.+..|..... .+..+|.+.+++.++..+++++..|+.+
T Consensus 352 ~iG~~igG~l~~~~g~~~~~----------~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 352 AIGSLIGGWLYDAFGARGMF----------DWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHHHHHHhcchhhh----------hHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999987665532111 2345677778888888887777765543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-15 Score=161.66 Aligned_cols=168 Identities=12% Similarity=0.153 Sum_probs=119.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhc----ccCchHH-HHHHHHHHHHHHH
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDS----FLGRFRV-IALGTFTALLGMI 100 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~----~~Grr~~-l~~~~~~~~~g~~ 100 (585)
..+...+.+..+..++..|+++.+|++..+++.+..+..+...+..|+.|+++|| + ||||- ++.+.+...+...
T Consensus 17 g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~~i~~~ 95 (444)
T PRK09669 17 GDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPFGVVCL 95 (444)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHHHHHHH
Confidence 3344455555666788999999999999999999999999999999999999999 5 88655 4456666666665
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
++... |... .......+++..++.+.+.........++.+|+.+++ ++|.+..++..
T Consensus 96 l~f~~---p~~~--------------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~------~eR~~l~~~r~ 152 (444)
T PRK09669 96 LTFYT---PDFG--------------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDP------RERHSLQSWRF 152 (444)
T ss_pred HHHhC---CCCC--------------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCH------HHHHHHHHHHH
Confidence 54432 2110 0124566666667777777777778889999998663 77888888888
Q ss_pred HHHHHHHHHHHHHHHHhhc-------ccchhHHHHHHHHHHHHH
Q 007910 181 ASVGLSYMASITLIVYIQD-------KAGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 181 ~~~~ig~~~g~~~~~~l~~-------~~g~~~~f~~~~~~~~i~ 217 (585)
.+.++|..+++.+...+.. ..+|+..+.+.+++.++.
T Consensus 153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~ 196 (444)
T PRK09669 153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVL 196 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHH
Confidence 8888888887765544332 235666665555444433
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-15 Score=160.30 Aligned_cols=152 Identities=16% Similarity=0.156 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
.....++..++|-+ ....|+...+.+...+..++.|.++|.+ |||..++.+.++..+|.+.++.+.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~------------ 129 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQ------------ 129 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCC------------
Confidence 56667889999865 5567889999999999999999999996 999999999999999999998766
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
+...++.+..+.|+|.|... .....++|..|. +.|..+..+......+....++.++..+.
T Consensus 130 -----------~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~-------k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 130 -----------NMNTFIAGMVLYGVGAGVQE-LAALAISELVPN-------KWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred -----------cHHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc-------chhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 67789999999999987765 456668999998 67777776666655555566777777776
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Q 007910 199 DKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 199 ~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
.+.+|||.|++..+...+++++.++
T Consensus 191 ~~~~WRw~~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 191 AHSGWRWIFYIFIIWSGIALVLIFF 215 (599)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHH
Confidence 6779999999988876666554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-15 Score=166.12 Aligned_cols=140 Identities=14% Similarity=-0.036 Sum_probs=125.5
Q ss_pred HHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCC
Q 007910 47 LEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAA 126 (585)
Q Consensus 47 ~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (585)
+..+.+.....+..+++.++..+++++.|.++||+ |||++++++.++..++.++.+++.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~-------------------- 169 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAP-------------------- 169 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhC--------------------
Confidence 56677888889999999999999999999999995 999999999999999999999887
Q ss_pred CcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Q 007910 127 KPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVG 206 (585)
Q Consensus 127 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~ 206 (585)
+++.+++.|++.|++.++...+...+++|.+++ +.|+.+.++ ......++..++..++++.. +||+.
T Consensus 170 ---~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~-------~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~ 236 (521)
T KOG0255|consen 170 ---NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP-------KQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWL 236 (521)
T ss_pred ---cHHHHHHHHHHHHhhccchhHHhHhhheeecCc-------chhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHH
Confidence 889999999999999999999999999999999 888998888 77777778888888888887 79999
Q ss_pred HHHHHHHHHHHHHH
Q 007910 207 FGVPVGLMLFSTVM 220 (585)
Q Consensus 207 f~~~~~~~~i~~~~ 220 (585)
+++..+..++.++.
T Consensus 237 ~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 237 FWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHHH
Confidence 99877766655555
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.8e-16 Score=172.95 Aligned_cols=204 Identities=15% Similarity=0.189 Sum_probs=153.5
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
..+|.+++.++..++....+.+........+.++++++..+.+++.+.+.+++.++.++.|+++||+ ||||.+.++.++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll 107 (633)
T TIGR00805 29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI 107 (633)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence 3345554555555666666667777788888999999999999999999999999999999999996 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCC----------------CCC-----CCc-c----cCCCCC--cchhHHHHHHHHHHHHhcc
Q 007910 95 ALLGMILLWLTAIIPAARPP----------------KCN-----PFI-E----ICPAAK--PRQLGFLFSSFVLMSIGAG 146 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~----------------~~~-----~~~-~----~~~~~~--~~~~~~~~~~~~l~g~g~g 146 (585)
+.+|.++.++...+..-++. -|. +.. + .|.... ...+..++++|+++|+|.+
T Consensus 108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~ 187 (633)
T TIGR00805 108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT 187 (633)
T ss_pred HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence 99999998876422110000 010 000 0 011111 1135678899999999999
Q ss_pred ccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc----------------------chh
Q 007910 147 GIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKA----------------------GWV 204 (585)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~----------------------g~~ 204 (585)
...+...+++.|.+|+ ++|++++++++.+..+|.++|+++++++.+.+ +|+
T Consensus 188 ~~~~~~~~~i~d~~~~-------~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWw 260 (633)
T TIGR00805 188 PIFPLGISYIDDFAKS-------KNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWW 260 (633)
T ss_pred cchhcCchhhhccCCc-------cccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHH
Confidence 9999999999999999 88999999999999999999999999887532 277
Q ss_pred HHHHHHHHHHHHHHHHHHHhCc
Q 007910 205 VGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
..|++.+++.++..+.+++..+
T Consensus 261 l~Fli~g~l~~l~~v~l~~~p~ 282 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFFFPK 282 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 7787776666555444444443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-15 Score=161.73 Aligned_cols=383 Identities=13% Similarity=0.067 Sum_probs=218.5
Q ss_pred CcchHHHHHH-HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccC-----chHHHH
Q 007910 16 GLRTMPFIIA-NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLG-----RFRVIA 89 (585)
Q Consensus 16 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----rr~~l~ 89 (585)
+++-.+.+++ ..+...+. +.+...+..++.+++|+++++.+...+...+...+-++ .|.++||+ + ||+.++
T Consensus 23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~ 99 (468)
T TIGR00788 23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLV 99 (468)
T ss_pred CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHH
Confidence 3444444443 55666666 77777888899999999999998888888888777665 99999997 8 777777
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcch
Q 007910 90 LGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNE 169 (585)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 169 (585)
++.++.. ......++. .+ +........+++.+++.+..-.+.-++..|..+ +++
T Consensus 100 ~~~~l~~-~~~~~~l~~-~~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---- 153 (468)
T TIGR00788 100 LSGLLGS-AILYGLLPG-KV-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---- 153 (468)
T ss_pred HHHHHHH-HHHHHhccc-cc-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC----
Confidence 7765542 112222211 01 123334447788999999999999999999998 433
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHH
Q 007910 170 RILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAW 249 (585)
Q Consensus 170 ~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 249 (585)
+.++...++.+...++|..+|+.++|++.+.++|+..|++.+.+.++..+..++..++.+...++.+....
T Consensus 154 ~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~--------- 224 (468)
T TIGR00788 154 SAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLE--------- 224 (468)
T ss_pred CcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccch---------
Confidence 44556667777778899999999999999999999999888776666544333333221000110000000
Q ss_pred hhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHH
Q 007910 250 KNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSG 329 (585)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (585)
..... ......... +..+. ..+ + .-..+.+...+.+....
T Consensus 225 -------------~~~~~-----~~~~~~~~~--~~~~~--------------~l~-----~-~l~~~~i~~~l~fifl~ 264 (468)
T TIGR00788 225 -------------MNMAL-----LTLGVLANV--KVQIL--------------GLR-----G-AIQLLEIAKPLIFIFLS 264 (468)
T ss_pred -------------hhhhh-----hhhhHHHHH--HHHHH--------------HHH-----H-HHhcHHHHHHHHHHHHH
Confidence 00000 000000000 00000 000 0 00001122211111110
Q ss_pred HHHHHhhcc-cchhhhhhcccccccCCcccccCCCccc---chhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHH
Q 007910 330 IMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFG---VFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIG 405 (585)
Q Consensus 330 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~ 405 (585)
+...... .+.+..+.. ..+ .++.... ....+..++...+. .|+.+| ++.++.+.
T Consensus 265 --~~~~~~~~~~~f~~~~~----~lG-----~s~~~~G~~~~~~~v~~i~g~~~~--------~~~~~~---~~~r~~l~ 322 (468)
T TIGR00788 265 --YANLPGASGSVFCATTQ----CLP-----GGPSFSGMSKVVGNLGSLCGVGGY--------DRFLKT---FPYRLLFG 322 (468)
T ss_pred --HhhcCCCCceeEEEEcc----cCC-----CCcchhhhHHHHHHHHHHHHHHHH--------HHHHhh---CCHHHHHH
Confidence 1111111 222221111 111 2233332 33334444444433 333334 56667888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHH
Q 007910 406 IGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVA 485 (585)
Q Consensus 406 ~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g 485 (585)
++.++.+++.+...... .+.+. ..+. .+.+......++.+++.++...+...++.+.+|++.+|+..|
T Consensus 323 ~~~~l~~~~~~~~~~l~-~~~~~---------~~gi--~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~a 390 (468)
T TIGR00788 323 VTTLLYTLSSLFDLILV-KRWNL---------AFGI--SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFA 390 (468)
T ss_pred HHHHHHHHHHhCceeee-ecccc---------ccCC--CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHH
Confidence 88877776654432111 00000 0000 012234445677788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 007910 486 LLSLGMAVGNLVGSLIVTILNRVTG 510 (585)
Q Consensus 486 ~~~~~~~ig~~ig~~l~~~i~~~~~ 510 (585)
+.+...++|..+++.+.+.+....|
T Consensus 391 l~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 391 LLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999988888776654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=161.22 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=94.5
Q ss_pred CChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcch
Q 007910 51 MSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQ 130 (585)
Q Consensus 51 ~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (585)
+++...+.+..+..++..+++++.||++||+ |||+++-..++++++++++++++...+. ...-
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~~liImIi~t~~~~~s~~~~~----------------~~~~ 143 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGKELIIMIICSALSGLSVGTTS----------------PLGV 143 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhHHHHHHHHHHHHhccCCCCCC----------------Ccch
Confidence 5567788999999999999999999999996 9999999999999999997776542221 1124
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007910 131 LGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITL 193 (585)
Q Consensus 131 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 193 (585)
..++...|+++|+|.|+-+|++.++.+|..-. ++|++..+......+.|.+.|..+
T Consensus 144 m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~-------~~RGa~iaavFa~Qg~GilaG~iv 199 (538)
T KOG0252|consen 144 MMTLCFFRFLLGIGIGGDYPLSATIMSESANK-------KTRGAFIAAVFAMQGFGILAGGIV 199 (538)
T ss_pred hhHHHHHHHHhhccccCCCcchHHHhhhhhhh-------ccccceeEEEEEecchhHhhccHH
Confidence 67899999999999999999999999999988 666666665544445544444333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-21 Score=209.52 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHH
Q 007910 54 PEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGF 133 (585)
Q Consensus 54 ~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (585)
.+.+++.+...++..++.+++|+++||+ |||++++.+.++..++.++..+++.. .+.+.
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~--------------------~~~~~ 104 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY--------------------NNFWM 104 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc--------------------ccccc
Confidence 3467889999999999999999999996 99999999999999999988876511 15677
Q ss_pred HHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhHHHHHH
Q 007910 134 LFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK---AGWVVGFGVP 210 (585)
Q Consensus 134 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~---~g~~~~f~~~ 210 (585)
+.++|+++|++.|+..+..+.++.|..|+ +.|++..++.+....+|..++..++..+.+. .+||..+.++
T Consensus 105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~~-------~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~ 177 (451)
T PF00083_consen 105 LLIGRFLIGFGIGGAYVVSPIYISEIAPP-------KHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFG 177 (451)
T ss_pred ccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999 7889989999999999988887665444332 3599998887
Q ss_pred HHHHHHHHHHH
Q 007910 211 VGLMLFSTVMF 221 (585)
Q Consensus 211 ~~~~~i~~~~~ 221 (585)
.+..++..+..
T Consensus 178 ~~~~l~~~~~~ 188 (451)
T PF00083_consen 178 AIPSLLVLLLR 188 (451)
T ss_pred ccccccccccc
Confidence 76665444433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.4e-14 Score=145.61 Aligned_cols=137 Identities=16% Similarity=0.159 Sum_probs=120.2
Q ss_pred HhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007910 35 VGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPP 114 (585)
Q Consensus 35 ~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 114 (585)
..+.-.+...+++.++++..|++++...+..++.+.+++.|++.+|+ |+|+.+++|+.++++|..+..-++
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa-------- 99 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAA-------- 99 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhh--------
Confidence 34556778888999999999999999999999999999999999996 999999999999999998886433
Q ss_pred CCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 115 KCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194 (585)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 194 (585)
+.+++.+++++.++++.|.+.-.++.+++++.+.+++.. ..-++..+....+|+.+||.++
T Consensus 100 ------------~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a-------~~rlnl~q~fn~lGa~~gp~~g 160 (422)
T COG0738 100 ------------SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA-------AFRLNLAQAFNGLGAILGPLLG 160 (422)
T ss_pred ------------hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH-------HHHHHHHHHhhhhHHHHHHHHH
Confidence 234789999999999999999999999999999999433 3347778888899999999999
Q ss_pred HHhhc
Q 007910 195 VYIQD 199 (585)
Q Consensus 195 ~~l~~ 199 (585)
+++..
T Consensus 161 ~~lil 165 (422)
T COG0738 161 SSLIL 165 (422)
T ss_pred HHHHH
Confidence 98876
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-15 Score=159.61 Aligned_cols=354 Identities=12% Similarity=0.084 Sum_probs=220.5
Q ss_pred HHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhh----cccCchHHHH-HHHHHHHHHHHHHHH
Q 007910 30 EKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISD----SFLGRFRVIA-LGTFTALLGMILLWL 104 (585)
Q Consensus 30 ~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD----~~~Grr~~l~-~~~~~~~~g~~~~~~ 104 (585)
..+.+.....++..|+++.+|+++...+.+..+..+...+..|+.|.++| |+ ||||-.+ ++....+++..++..
T Consensus 13 ~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~llf~ 91 (428)
T PF13347_consen 13 YNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFLLFS 91 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHHhhc
Confidence 34444455568889999999999999999999999999999999999999 76 9887755 576777777777764
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVG 184 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (585)
.. |. .. .......++.+..++..++.........++..|..+++ ++|.+..++...+..
T Consensus 92 ~~--p~-----~~--------~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~------~~R~~l~~~~~~~~~ 150 (428)
T PF13347_consen 92 PP--PA-----GL--------SFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDP------DERTRLSSWRMIFSM 150 (428)
T ss_pred cc--cc-----hh--------hhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccH------hhhhhHHHHHHHHHH
Confidence 31 10 00 00113445577777788999999999999999999874 678888888888888
Q ss_pred HHHHHHHHHHHHhhccc-------chhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCC
Q 007910 185 LSYMASITLIVYIQDKA-------GWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLP 257 (585)
Q Consensus 185 ig~~~g~~~~~~l~~~~-------g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 257 (585)
+|..+...+.+.+.+.. +|++...+.+++.++......+..|+...+.+.+++..
T Consensus 151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~------------------ 212 (428)
T PF13347_consen 151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKI------------------ 212 (428)
T ss_pred HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccccccc------------------
Confidence 88876666655554322 47777666555555444444333332000000000000
Q ss_pred CCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 258 PTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTIS 337 (585)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (585)
+.. ..++.+ .++ |.+...+... .+.+....
T Consensus 213 ----------------------~~~--------------------~~~~~~----~~n-r~~~~l~~~~---~~~~~~~~ 242 (428)
T PF13347_consen 213 ----------------------SLR--------------------DSLRSL----FRN-RPFRILLLAF---FLQWLAFA 242 (428)
T ss_pred ----------------------ccc--------------------cchhhh----ccc-chHHHHHHHH---HHHHhhhh
Confidence 000 000000 000 1111121111 11122222
Q ss_pred c-cchhhhhhc-ccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHH
Q 007910 338 Q-YTFPQLQAK-SMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAM 415 (585)
Q Consensus 338 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~ 415 (585)
- .+...+... .+.... ..+.+.....+..++..++ ..++.+|+|+| +.+..+..+.+++.
T Consensus 243 ~~~~~~~y~~~~vl~~~~-------~~~~~~~~~~~~~~v~~~~----~~~l~~r~gk~-------~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 243 LMNTFLPYYFTYVLGNEG-------LISIFMLIFFVASIVGSPL----WGRLSKRFGKK-------KVYIIGLLLAALGF 304 (428)
T ss_pred hhhhHHHHHHHHHhcCch-------hhHHHHHHHHHHHHHHHHH----HHHHHHHccce-------eehhhhHHHHHHHH
Confidence 1 111111111 111110 1122333444555555555 45667777776 67778888877777
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCC-------cchhhHHHHHHH
Q 007910 416 AVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFP-------KTMSSIGVALLS 488 (585)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~g~~~ 488 (585)
+++.+.. ..+.++..+..++.+++.+...........+..+ ++..|...|+++
T Consensus 305 ~~~~~~~--------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 305 LLLFFLG--------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred HHHHHHH--------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 7665544 1256667788899999999888888888888766 455799999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC
Q 007910 489 LGMAVGNLVGSLIVTILNRVTGS 511 (585)
Q Consensus 489 ~~~~ig~~ig~~l~~~i~~~~~~ 511 (585)
+...++..++..+.+.+....|-
T Consensus 365 ~~~k~~~~la~~i~g~~l~~~Gy 387 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLLALVGY 387 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999988877653
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-15 Score=149.63 Aligned_cols=116 Identities=15% Similarity=0.104 Sum_probs=105.4
Q ss_pred ChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchh
Q 007910 52 SGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQL 131 (585)
Q Consensus 52 s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (585)
+..-+|.+-+.|++...+.++..|.++||+ |||.++.+++...++...+.+++. |+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~-----------------------~F 121 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSR-----------------------NF 121 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHH-----------------------HH
Confidence 445678888999999999999999999998 999999999999999888888887 67
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 132 GFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQD 199 (585)
Q Consensus 132 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 199 (585)
..++.+|++.|+..|-. ..+.++++|.+++ ++|+.+++.......+|..+||.+++++.+
T Consensus 122 ~afv~aR~l~Gi~kgnl-~v~rAiisdV~se-------k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 122 AAFVLARFLGGIFKGNL-SVIRAIISDVVSE-------KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHHhhhhccCch-HHHHHHHHhhcCh-------hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 67888899999998875 6779999999999 788999999999999999999999999988
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.69 E-value=9e-14 Score=147.49 Aligned_cols=175 Identities=15% Similarity=-0.014 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHH--HHHHHHHHHHHhhHh-HHhhhcccCchHHHHHHHHHHHH-
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANV--LFLWGAISNFLPIIG-ASISDSFLGRFRVIALGTFTALL- 97 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i--~~~~~~~~~~~~~~~-G~laD~~~Grr~~l~~~~~~~~~- 97 (585)
.+.+..+.+.+.+....+.++.|++ +.|.|..+.+.. .....+...+..++. ++.+||+ ||||..++...+...
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHHHH
Confidence 3444556666666666677777775 569999999986 355566666666655 6689996 999997665533222
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
....+.... +. ......++....+.++..+..-+...++..|..++ ++++.+.+
T Consensus 83 ~~~~~~~~~--~~-----------------~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~-------~~~~~~~~ 136 (390)
T TIGR02718 83 CLASLALVG--PD-----------------VAGAGWAVGLLACASLASATQDIATDGMAAEHFNG-------RTLAKGNA 136 (390)
T ss_pred HHHHHHcCC--cc-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hhhhHHHH
Confidence 222222111 10 01122333334444455555555555555565555 66777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
...++..+|..+|+.+.+++.+++|||..|++.+++.++..+..++.
T Consensus 137 ~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 137 VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888899999999888999999999999998877666555444433
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-13 Score=150.22 Aligned_cols=151 Identities=14% Similarity=0.180 Sum_probs=115.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc---cCchHHHHH-HHHHHHHHHHH
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF---LGRFRVIAL-GTFTALLGMIL 101 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~l~~-~~~~~~~g~~~ 101 (585)
.++...+.+..+..++..|+++.+|+++..++.+..+.-+.-.+.-|+.|+++||. +||||-.++ +.+.+.++..+
T Consensus 17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~l 96 (460)
T PRK11462 17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVL 96 (460)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHH
Confidence 44445555666667899999999999999999999999999999999999999962 499887664 55667766655
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
+... |... ......++.+.-++..++.........++.+|+.+++ ++|.+..++...
T Consensus 97 lf~~---p~~s--------------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~------~eRt~l~s~r~~ 153 (460)
T PRK11462 97 AYST---PDLS--------------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDP------TQRISLQSWRFV 153 (460)
T ss_pred HHhC---CCCC--------------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH------HHHHHHHHHHHH
Confidence 5532 2100 0112455666667778888888888899999999874 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 007910 182 SVGLSYMASITLIVYIQD 199 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~ 199 (585)
+.++|..+++.+...+..
T Consensus 154 ~~~iG~~~~~~~~~plv~ 171 (460)
T PRK11462 154 LATAGGMLSTVLMMPLVN 171 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888777654443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.5e-15 Score=160.48 Aligned_cols=425 Identities=16% Similarity=0.111 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHhHhHHH---HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHA---NMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~---~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
|.+++..|+..+..+++.. .+-..+.++++.+..+++|+.++......+..|+.+.+.||+ |.|.+.++|.++..+
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~~ 123 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAAL 123 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHHH
Confidence 4445555666666666553 334556788999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHH-HHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSF-VLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
|.++..++. +.+.+++.. ++.|+|.|+++..+..+++.+|+ ++|+.+.
T Consensus 124 g~~lssF~~-----------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~--------kkR~lA~ 172 (509)
T KOG2504|consen 124 GLLLSSFAT-----------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE--------KKRALAT 172 (509)
T ss_pred HHHHHHHHh-----------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhH--------HHHHHHH
Confidence 999999988 666677666 67899999999999999998887 4678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCC
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPL 256 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (585)
++-..+..+|..+=|.+..++.+.+|||..+++-..+.+-..+.....+|......+. ...+. ++.....
T Consensus 173 Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~--~~~~~--------~~~~~~~ 242 (509)
T KOG2504|consen 173 GIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN--EEKDL--------RNSAASV 242 (509)
T ss_pred hhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch--hhhhh--------ccccccc
Confidence 8888888999988888999999999999999887666654444444444422221111 00000 0000000
Q ss_pred CCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 257 PPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTI 336 (585)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (585)
+.......... ..+.....+ ....+.......+++ ....+.+.... .+..+..++.. .+.+.....+....+
T Consensus 243 ~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~d~~ll~~~~----fl~~~~~~~~~~~g~ 314 (509)
T KOG2504|consen 243 ESTPKPVELRI-SERDSGLKK-LSLSNLATLKRGPDK-WRNSPLQAFLS-MLDLSLLKDPK----FLLLALSNLFAYLGF 314 (509)
T ss_pred ccccccccccc-ccCCCCCCc-ccccchhhhhhCCcc-ccccchhhhhh-hhhHHHHcCch----HHHHHHHHHHHHHHH
Confidence 00000000000 000000000 000000000000000 00000000000 00011111111 111111112211222
Q ss_pred cccchhhhh---hcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHH
Q 007910 337 SQYTFPQLQ---AKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCV 413 (585)
Q Consensus 337 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i 413 (585)
.-+.+++.. ....+..... ...+.++..+.+.-++++.+. ++-. .+......+++++.++
T Consensus 315 ~~p~~~l~~~~~~~g~~~~~aa----~l~Siigi~~i~gRi~~G~la--------D~~~-----~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 315 NVPFVYLPSYAKSLGLSSNDAA----FLLSIIGVSDIIGRIILGLLA--------DKPG-----IRALVLFLLTLLIAGL 377 (509)
T ss_pred HHHHHHHHHHHhhcCCChhhhH----HHHHHHHHhhhhhhhhhhhhc--------Cccc-----cchHHHHHHHHHHHHH
Confidence 211111111 1111111100 011122233333333333332 2321 2344556666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHH
Q 007910 414 AMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAV 493 (585)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i 493 (585)
+.+++.... +...++...+++|...+....-......+..+.+.-..+.|+..+.+++
T Consensus 378 ~~~~~p~~~----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi 435 (509)
T KOG2504|consen 378 ARLFLPFAT----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI 435 (509)
T ss_pred HHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH
Confidence 665544433 4556777778888888888877777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Q 007910 494 GNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACS 549 (585)
Q Consensus 494 g~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~ 549 (585)
+..+|+-+.+.+.+.++ +|...|.+.++..+++.+++++..
T Consensus 436 ~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 436 GALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999887665553 366778888888888877766555
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-15 Score=150.64 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=137.6
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCC
Q 007910 48 EYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAK 127 (585)
Q Consensus 48 ~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (585)
.++-+++++|++.+.+.+...+..++.|.+.||+ |+|--+++|++++....+++++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~--------------------- 157 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGN--------------------- 157 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcc---------------------
Confidence 4667789999999999999999999999999995 999999999999999999999876
Q ss_pred cchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHH
Q 007910 128 PRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGF 207 (585)
Q Consensus 128 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f 207 (585)
++++++++|.++|+|.+...++..++++|.||++ .+|++++++.--+..+|-.+||.++|.+-+..|++.+|
T Consensus 158 --sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d------~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPF 229 (464)
T KOG3764|consen 158 --SYPMLFVARSLQGVGSAFADTSGLAMLADVFPED------NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPF 229 (464)
T ss_pred --hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc------hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcH
Confidence 7899999999999999999999999999999985 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCc
Q 007910 208 GVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~ 226 (585)
++.++++++...+.++..+
T Consensus 230 lVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 230 LVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHHHHHHheeC
Confidence 9998888877777666544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.3e-14 Score=140.32 Aligned_cols=165 Identities=11% Similarity=-0.010 Sum_probs=124.4
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhh
Q 007910 28 AFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAI 107 (585)
Q Consensus 28 ~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~ 107 (585)
.++....-...+.+..-+...+|++..+..++......+..+++...|.++|++ |||+.+...++...+...+...+.
T Consensus 87 wmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp- 164 (528)
T KOG0253|consen 87 WMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP- 164 (528)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC-
Confidence 333333333444455556667899999999999999999999999999999996 999999888777776666666555
Q ss_pred cCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHH
Q 007910 108 IPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSY 187 (585)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~ 187 (585)
|+..+++.|.+.|+|.|+ .|...++-.|.-|. ..|....-.. ....+|.
T Consensus 165 ----------------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~-------~~r~~~~V~~-~~waig~ 213 (528)
T KOG0253|consen 165 ----------------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPS-------SHRWLLTVMS-FFWAIGQ 213 (528)
T ss_pred ----------------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccC-------cCCCcchhHH-HHHHHHH
Confidence 677899999999999999 89999999999998 5555544444 5667888
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 188 MASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 188 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
+....+.-....++||||..........+...+.++..
T Consensus 214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ 251 (528)
T KOG0253|consen 214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVY 251 (528)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcc
Confidence 88777766666788999887666554444444444443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-13 Score=148.51 Aligned_cols=149 Identities=14% Similarity=0.058 Sum_probs=116.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 007910 40 NMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF 119 (585)
Q Consensus 40 ~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 119 (585)
.....+.+++|++..+.+++.++.... .++.++.|+++||+ |||++++++.+++.+|+++++++.+ ...
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~~~-g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~--~~i------- 116 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGIAV-GYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQ--EVI------- 116 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhc--ccc-------
Confidence 345567899999999999988775443 45677889999996 9999999999999999999998631 000
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 007910 120 IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMA-SITLIVYIQ 198 (585)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~-g~~~~~~l~ 198 (585)
..+.+.+++.|++.|+|.+...+.....+.++|| ++|+++.++...+.++|+++ +++..+++.
T Consensus 117 --------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp--------~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 117 --------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP--------SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred --------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1268889999999999999998888899999996 46799999999999999975 665566655
Q ss_pred cccchhHHHHHHHHHHHHH
Q 007910 199 DKAGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 199 ~~~g~~~~f~~~~~~~~i~ 217 (585)
+ +|+..|++.+++.++.
T Consensus 181 ~--~~~~~fl~l~vl~~vv 197 (591)
T PTZ00207 181 D--NTSAYFFFLMSFALVV 197 (591)
T ss_pred H--hHHHHHHHHHHHHHHH
Confidence 3 5777666655544433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-13 Score=149.35 Aligned_cols=151 Identities=13% Similarity=0.019 Sum_probs=125.9
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCC
Q 007910 46 ILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPA 125 (585)
Q Consensus 46 ~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (585)
.+++|+...+.+.+.++|.+++.++.+++|.+.||+ .-.+.+....+++.+..++.....
T Consensus 73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------- 132 (495)
T KOG2533|consen 73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------- 132 (495)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 367888899999999999999999999999999996 877777666666555544444433
Q ss_pred CCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHh------hc
Q 007910 126 AKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYI------QD 199 (585)
Q Consensus 126 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l------~~ 199 (585)
|++.+++.|+++|+..+..+|+...+++.+|.+ ++|++.+++++...++|.++|.+++..+ ..
T Consensus 133 ----s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~-------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~ 201 (495)
T KOG2533|consen 133 ----SFPGLIALRFLLGLFESGGWPGVVAILGNWYGK-------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG 201 (495)
T ss_pred ----hhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh-------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence 788899999999999999999999999999999 8999999999999999999999888775 23
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCcc
Q 007910 200 KAGWVVGFGVPVGLMLFSTVMFLLGSSL 227 (585)
Q Consensus 200 ~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (585)
..||||.|++.+++.++..++.++..|.
T Consensus 202 ~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 202 LAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cCCceeehhHHHHHHHHHHheEEEEecC
Confidence 4689999999988777666555554443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-14 Score=145.14 Aligned_cols=389 Identities=10% Similarity=0.027 Sum_probs=212.9
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH-
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL- 97 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~- 97 (585)
..+......++..+++....++.+.++++..|+|.+++|.+.++..+...+.+|+.|.++||. |.||-++....+..+
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~l 86 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLLL 86 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHHH
Confidence 445555555666666667779999999998999999999999999999999999999999995 977765544433222
Q ss_pred -HHHHH-HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 98 -GMILL-WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 98 -g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
+-... .+..-+.. | ++.+.++.++..+.......+.. |.+..+.. ++.+-=
T Consensus 87 ~~pff~~v~~pll~~-------------------n---~~lg~iig~i~l~~~f~~~~~~~-Ea~~er~s----r~~~fe 139 (412)
T PF01306_consen 87 FGPFFIYVFGPLLQS-------------------N---FWLGAIIGGIYLGLVFNAGVPLS-EAYAERVS----RRNGFE 139 (412)
T ss_dssp CHHHHHHTHHHHHHT-------------------T----HHHHHHTTTTTTTTTTTHHHHH-HHHHHHHH----HHHSS-
T ss_pred HHHHHHHHHHHHHHH-------------------H---HHHHHHHHHHHHHHHHcccchHH-HHHHHHHH----HHhcCC
Confidence 22221 11110000 1 33333333343343333333322 33322100 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCC
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLP 255 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (585)
++-..+.+++|.+++..++|.+.+ .+-+..|++.....++..++.+..++..++.....+..
T Consensus 140 YG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~----------------- 201 (412)
T PF01306_consen 140 YGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL----------------- 201 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-----------------
T ss_pred cchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-----------------
Confidence 444556778888889999998876 44567888766554444444433332211100000000
Q ss_pred CCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHH-HHHHH
Q 007910 256 LPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSG-IMIAV 334 (585)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 334 (585)
.. ..+..+..|-. +-.++ |+++....+.... ..+.+
T Consensus 202 ----------------~~-~~~~~~~~~~~-------------------------~l~k~-~~fw~~~l~v~g~~~~Y~v 238 (412)
T PF01306_consen 202 ----------------GA-KKDKVSLKDVL-------------------------SLFKM-RNFWFFVLFVIGVAAIYDV 238 (412)
T ss_dssp ----------------SS-------HHHHH-------------------------HHTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cc-CCCCCcHHHHH-------------------------HHhcc-hhHHHHHHHHHHHHHHHHH
Confidence 00 00000000000 00011 2222222222222 33334
Q ss_pred hhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHH
Q 007910 335 TISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCV 413 (585)
Q Consensus 335 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i 413 (585)
..+| +.++....... .. ....+...+.+.+.+=.++.. +..++.+|. ++++.+.++..++.+
T Consensus 239 fdqqf~~y~~~~f~~~--~~-------g~~~~G~l~s~~v~~E~~~m~-~~p~li~ri-------g~k~~Lllag~i~~i 301 (412)
T PF01306_consen 239 FDQQFPIYFASFFQSA--GQ-------GNQMYGYLWSVQVFLEALMMF-FSPWLINRI-------GAKNLLLLAGVIMAI 301 (412)
T ss_dssp HHHHHHHHHHHTSSSH--HH-------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc--cc-------ChhHHhHHHHHHHHHHHHHHH-HHHHHHHhc-------ChHhHHHHHHHHHHH
Confidence 4444 54432211111 01 112222233222222222211 123344554 445888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHH-HHHHHH
Q 007910 414 AMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVAL-LSLGMA 492 (585)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ 492 (585)
=....++.. +++++++.-.+.++-..+...+..-|+.+..|++..++...+ +++..+
T Consensus 302 Ri~~~~~~~----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~ 359 (412)
T PF01306_consen 302 RIIGSGFAT----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQ 359 (412)
T ss_dssp HHHHHHT------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHH
T ss_pred HHHHHhhhc----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH
Confidence 877777655 566788888899999999999999999999999999999988 468999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 007910 493 VGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWA 551 (585)
Q Consensus 493 ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~ 551 (585)
+|..+.+.+.|.+.+..| ++.+|++++++.+...++-.+..++
T Consensus 360 ~~~~i~s~~~G~lyd~~G----------------~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 360 IGIIILSPLAGYLYDRIG----------------FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHhhhHHhhHhhcC----------------cHHHHHHHHHHHHHHHHHheeeecC
Confidence 999999999888775543 5678999998877777665555443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-12 Score=136.98 Aligned_cols=358 Identities=13% Similarity=0.124 Sum_probs=220.6
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc---cCchHH-HHHHHHHHHHHHHH
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF---LGRFRV-IALGTFTALLGMIL 101 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~-l~~~~~~~~~g~~~ 101 (585)
..+...+.+-.+..++..|.++..|+++..+|.+..+.-+.-++.-|+.|.+.||. +||+|- ++++.+.+++...+
T Consensus 20 gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l 99 (467)
T COG2211 20 GDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVL 99 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHH
Confidence 45555666667778899999999999999999999999999999999999999973 377766 45565777777777
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
+..+.. .+ ...+....++...+.+++..++.....++.+++.++. +||.+..++...
T Consensus 100 ~F~~p~-~~----------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~------~ER~~l~s~R~~ 156 (467)
T COG2211 100 LFITPD-FS----------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDP------QERASLTSWRMV 156 (467)
T ss_pred HHcCCC-cc----------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCH------HHHHHHHHHHHH
Confidence 776441 11 1125566777788899999999988899999999875 889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHHHh-CccccccCCCCCcchhHHHHHHHHHhhcC
Q 007910 182 SVGLSYMASITLIVYIQDK-------AGWVVGFGVPVGLMLFSTVMFLLG-SSLYIKPKANKVLFTGFGQVISAAWKNRH 253 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~-------~g~~~~f~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 253 (585)
+.++|..+...+.+.+... .||+..-.+..++..+.+.++++. ++|..+..+.++.
T Consensus 157 ~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~---------------- 220 (467)
T COG2211 157 FASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG---------------- 220 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc----------------
Confidence 9999987766665554432 345544333333333333322222 2221111111100
Q ss_pred CCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 254 LPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIA 333 (585)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (585)
.+.++.+..... ...|.++..+. ...+.+
T Consensus 221 -----------------------~~~~~~~~~~~~-------------------------~~Nrp~~~~l~---~~l~~~ 249 (467)
T COG2211 221 -----------------------VKLKLKDSFLLI-------------------------FKNRPLLLLLL---MNLLLF 249 (467)
T ss_pred -----------------------ccccHHHHHHHH-------------------------HccchHHHHHH---HHHHHH
Confidence 000000000000 00112222222 233333
Q ss_pred Hhhcc-cchhhhhhc-ccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHH
Q 007910 334 VTISQ-YTFPQLQAK-SMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAIS 411 (585)
Q Consensus 334 ~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~ 411 (585)
..++. .+...+... .++... ..+...........+++.++ .-++.+|+|+| +....+.++.
T Consensus 250 ~~~~i~~s~~~yy~~y~lg~~~------l~~~~~~~~~~~~~l~~~~~----~p~L~~~~gkk-------~~~~~~~~~~ 312 (467)
T COG2211 250 IAFNIRGSIMVYYVTYVLGDPE------LFAYLLLLASGAGLLIGLIL----WPRLVKKFGKK-------KLFLIGLLLL 312 (467)
T ss_pred HHHHHHhhhhheeEEEEcCChH------HHHHHHHHHHHHHHHHHHHh----HHHHHHHhchH-------HHHHHHHHHH
Confidence 44444 333222221 122111 11122222222222222333 34555666665 7788888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcC-------CcchhhHHH
Q 007910 412 CVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF-------PKTMSSIGV 484 (585)
Q Consensus 412 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~-------P~~~rg~~~ 484 (585)
.++.+.+-+.. ..+....++..++.++|.+...+-.++.+.+.. -.+..|...
T Consensus 313 ~i~~~~~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~ 372 (467)
T COG2211 313 AVGYLLLYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY 372 (467)
T ss_pred HHHHHHHHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence 77766655433 123444555668888899898888888887653 456678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007910 485 ALLSLGMAVGNLVGSLIVTILNRVTG 510 (585)
Q Consensus 485 g~~~~~~~ig~~ig~~l~~~i~~~~~ 510 (585)
|..++..-+|..++..+.++++...|
T Consensus 373 s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 373 SGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999887765
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7e-12 Score=126.00 Aligned_cols=327 Identities=13% Similarity=0.110 Sum_probs=222.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
..+..-+++++|+|.++++.+.+.-.+....+++++.+++.|+ |.+|.+..+.++.++|..+=...
T Consensus 32 gPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~~iR~~~------------- 97 (395)
T COG2807 32 GPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGILIRSLG------------- 97 (395)
T ss_pred hhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 4456677889999999999999999999999999999999996 99999999999999998776642
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
+.+.++.+-.+.|.|.+......++.+-+-||+ +.+..++.|....++|+.+++.+...+.
T Consensus 98 -----------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk--------~~~~mtglYs~sl~~~aaLaa~lavpla 158 (395)
T COG2807 98 -----------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK--------RVGLMTGLYSTSLGAGAALAAALAVPLA 158 (395)
T ss_pred -----------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc--------chhhHHhHHHHHHHHHHHHHhhhhhHHH
Confidence 356688889999999999999999999999996 4577889999999999999999999998
Q ss_pred ccc-chhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCc
Q 007910 199 DKA-GWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTE 277 (585)
Q Consensus 199 ~~~-g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (585)
++. |||....+-+...+++++.++.-..+.+....+... .+
T Consensus 159 ~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~--------------------~~------------------ 200 (395)
T COG2807 159 QHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKL--------------------VS------------------ 200 (395)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccc--------------------cc------------------
Confidence 877 799988877777777777665542221100000000 00
Q ss_pred hhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhcccccccCCc
Q 007910 278 KLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSE 356 (585)
Q Consensus 278 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 356 (585)
+...|+ +...+...+.+-+.+..+|..+.+ +.++.+++ ++....|
T Consensus 201 -----------------------~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G--~sa~~aG- 246 (395)
T COG2807 201 -----------------------VRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRG--LSAAEAG- 246 (395)
T ss_pred -----------------------cccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCHHHhh-
Confidence 001121 011222233344566777777777 66644433 3333221
Q ss_pred ccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007910 357 KLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLAD 436 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 436 (585)
.-.+ +..+..+..-+..|+. .+|.. +.+.........+.++.+.+.+..
T Consensus 247 ---~lls-l~~l~~~~~~ll~P~l-------a~R~~------n~r~~~~~~~~~~l~G~~G~~~~P-------------- 295 (395)
T COG2807 247 ---SLLS-LMQLAQLPTALLIPLL-------ARRSK------NQRPLVVLALLLMLVGLVGLLLAP-------------- 295 (395)
T ss_pred ---hHHH-HHHHHHHHHHHHHHHH-------HHHhc------ccchHHHHHHHHHHHHHHHHHHhh--------------
Confidence 0001 1111222233333332 22322 222455555666666666665443
Q ss_pred CCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhc-CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007910 437 NPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQ-FPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTG 510 (585)
Q Consensus 437 ~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~-~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~ 510 (585)
..++++. .+++|+|.+..+|-...++... ..++..+...|+.+..+.+-..+||.+.|.+.+.+|
T Consensus 296 ------~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g 361 (395)
T COG2807 296 ------GQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG 361 (395)
T ss_pred ------hhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC
Confidence 1122222 4788999888888888888754 666777778888888888889999999999998886
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.3e-12 Score=135.76 Aligned_cols=176 Identities=10% Similarity=0.082 Sum_probs=132.1
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
+++..+..+...++....++....+++.|+++++|+++.+.+.+.+...+...++.+++|+++||+ |||+.+..+.+..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 334344444444444445555566788899999999999999888888888888999999999996 9999888776655
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.+......... +.+.+++.+++.+++.|...+..+.+..|.+|+ + |+++
T Consensus 293 ~~~~~~~~~~~-----------------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~-~g~~ 341 (393)
T PRK15011 293 VCFYAGMLMAH-----------------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-------Q-AGSA 341 (393)
T ss_pred HHHHHHHHHHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C-cchH
Confidence 54443333322 455567778777777777666777778888875 3 6788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
.++++...++|..++|.++|++.+..||+..|++..++.++++++.+.
T Consensus 342 ~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 342 TTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 898888899999999999999999889999998877777666655544
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.7e-10 Score=123.23 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchh
Q 007910 448 WLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHY 527 (585)
Q Consensus 448 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~ 527 (585)
.+.+..++.|+..+-.++..-++..+..|++.++...|++.+....++.+||.+.+.+.+.+++ .
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~---------------~ 446 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS---------------Q 446 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------------c
Confidence 3444557788999999999999999999999999999999999999999999999999887752 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007910 528 DYYYWILCILSVVNFFYFIAC 548 (585)
Q Consensus 528 ~~~f~~~~~i~vv~~~~~~~~ 548 (585)
+.-+..+.++.++++++.+.+
T Consensus 447 r~g~~~l~~lf~~gl~ll~~v 467 (477)
T PF11700_consen 447 RYGFLFLLVLFLIGLILLFFV 467 (477)
T ss_pred hhHHHHHHHHHHHHHHHHhhc
Confidence 455777777778877765443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=135.49 Aligned_cols=176 Identities=14% Similarity=0.108 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
...+...++..+.+|++..+++.|+.+.+|++..+..++.....++..++.+++|+++||+ |||++++.+.++..++..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~~~~~~ 331 (490)
T PRK10642 253 LTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVALFVLAI 331 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 3333444556678899999999999888999998888888888888999999999999996 999999888765554433
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
.+..... ..+...+++++++.+++.+...+....++.|.+|+ +.|+++.++.+
T Consensus 332 ~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~-------~~Rg~~~g~~~ 384 (490)
T PRK10642 332 PAFILIN--------------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPT-------HIRYSALAAAF 384 (490)
T ss_pred HHHHHHh--------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------ccchHHHHHHH
Confidence 3222110 01456677888888887777777778888999999 88999999755
Q ss_pred HHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHHh
Q 007910 181 ASVGLSYMASITLIVYIQDKA-GWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 181 ~~~~ig~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
....+++.++|.+.+++.+.. +|+.++++..+..++.++..++.
T Consensus 385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 429 (490)
T PRK10642 385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTM 429 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence 556667788899999988754 46666655444444444444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.9e-09 Score=109.84 Aligned_cols=374 Identities=13% Similarity=0.102 Sum_probs=211.6
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccC-----chHH-HHHHHHHHHHHHHHHHHhhhcCC-CCCCCCC
Q 007910 45 LILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLG-----RFRV-IALGTFTALLGMILLWLTAIIPA-ARPPKCN 117 (585)
Q Consensus 45 l~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~G-----rr~~-l~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~ 117 (585)
+..+++++..-.+..++...+... ..+..|+.||+. + ||.- +..|.+++..+..+.+++.-.-+ -.++...
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG 83 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence 456788888877777777666655 588999999996 6 4443 55666777777766665431111 0001000
Q ss_pred CCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 118 PFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYI 197 (585)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 197 (585)
++ ............+.|+|.+...+...++++|..|+ ++|++..++.+.+.-+|.+++..+.+.+
T Consensus 84 ~~--------~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e-------~~R~~~v~ivw~Mli~G~iv~ai~~g~l 148 (403)
T PF03209_consen 84 PF--------WLGLALAALAFLLYGLGVHASGTSFLALLADLAPE-------ERRPRVVAIVWVMLIVGIIVSAIVFGRL 148 (403)
T ss_pred cc--------HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH-------hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01122344556778999999999999999999999 8899999999999999999999999988
Q ss_pred hcccchhHHHHH---HHHHH-HHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcC
Q 007910 198 QDKAGWVVGFGV---PVGLM-LFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLT 273 (585)
Q Consensus 198 ~~~~g~~~~f~~---~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (585)
.+.++-.-...+ .++.. ++.++..+-..++.....+..
T Consensus 149 L~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~-------------------------------------- 190 (403)
T PF03209_consen 149 LDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA-------------------------------------- 190 (403)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC--------------------------------------
Confidence 877664322222 22221 122112211111111110000
Q ss_pred CCCchhhhhhhhh-hccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhccccc
Q 007910 274 APTEKLRFLNRAC-VVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDR 351 (585)
Q Consensus 274 ~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 351 (585)
.+++.++.+... +..+ .+.++++..+.+. .. ..+.| ..+=.+-.+.
T Consensus 191 -~~~~~~f~~a~~~~~~~-----------------------~~a~~f~~fl~l~--t~---a~~~QD~iLEPygg~V--- 238 (403)
T PF03209_consen 191 -ERPRPPFREAWRQVWAS-----------------------PQARRFFVFLFLG--TL---AFFMQDVILEPYGGEV--- 238 (403)
T ss_pred -CCCCccHHHHHHHHHhC-----------------------CChhHHHHHHHHH--HH---HHHhhHHHcCCchhHH---
Confidence 000001111000 0000 0112222222111 11 22233 2221111111
Q ss_pred ccCCcccccCCCc---ccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 352 HIFSEKLKIPPGS---FGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSA 428 (585)
Q Consensus 352 ~~~~~~~~~~~~~---~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~ 428 (585)
+.++++. +..+-....++...+..... .+|. .+.+...+|+....+++.......
T Consensus 239 ------fgmsv~eTT~Lta~~~~G~L~G~~~~g~~l---~~~~-------~~~~~a~~G~~~~~~~f~lii~a~------ 296 (403)
T PF03209_consen 239 ------FGMSVGETTRLTAFWGGGTLLGMLLAGFLL---SRRL-------GKKRTAALGCLLGALAFALIILAG------ 296 (403)
T ss_pred ------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCC-------CchHHHHHHHHHHHHHHHHHHHHH------
Confidence 2233332 22233344444444433221 2222 233455667777666666554433
Q ss_pred HHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 429 AIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRV 508 (585)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~ 508 (585)
..-+.+.+.+..+++|+|.+++..+..+...+..+++..|..+|+|...+.++..++..+.+.+.+.
T Consensus 297 -------------~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 297 -------------PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred -------------hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124556788899999999999999999999999999999999999999999999999988887655
Q ss_pred cCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 509 TGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFI 546 (585)
Q Consensus 509 ~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~ 546 (585)
.. ++..+.....|..+|.+=+++.++++.+..
T Consensus 364 ~~------~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 364 VR------ALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HH------HhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 32 111111223566677766666666665433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=134.42 Aligned_cols=176 Identities=12% Similarity=0.019 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.++...+..++....+++...+++.|+++++|++..++++......++..++.+++|+++||+ |||+.+.....+..++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~~ 337 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALII 337 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHHH
Confidence 345556666777777778888999999999999999999999999999999999999999996 9999877655544443
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
..+..+.. . .+.....+.+++.|+..............|.+|+ +.|+++.++
T Consensus 338 ~~~~~~~~--~-------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~-------~~~g~a~gi 389 (467)
T PRK09556 338 FTLGVYQH--A-------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPK-------KAIGVANGI 389 (467)
T ss_pred HHHHHHHh--c-------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcch-------hhHHHHHHH
Confidence 32222211 0 1344455667777754433222333566799998 899999999
Q ss_pred HHHHHHH-HHHHHHHHHHHhhc------------ccchhHHHHHHHHHHHHHHHHHHH
Q 007910 179 YYASVGL-SYMASITLIVYIQD------------KAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 179 ~~~~~~i-g~~~g~~~~~~l~~------------~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
.+...++ |..++|.+.|++.+ ..+|+..|++..+..+++.+..+.
T Consensus 390 ~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 390 KGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred HHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 9999887 77999999999999 578999998876666666555443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=138.54 Aligned_cols=134 Identities=13% Similarity=0.039 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHH
Q 007910 59 VLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSF 138 (585)
Q Consensus 59 i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (585)
...+..++..++.+++|+++||+ |||++++++.++.+++.+++++.. +...+++.+
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~-----------------------s~~~ll~~~ 655 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN-----------------------SESAMIALL 655 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc-----------------------cHHHHHHHH
Confidence 34556678889999999999996 999999999999888887777654 445567777
Q ss_pred HHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHH
Q 007910 139 VLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFST 218 (585)
Q Consensus 139 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~ 218 (585)
++.+++.++.++...++++|++|+ +.|++++++.+....+|+++||.+++.+.+. +...+|++.+++.+++.
T Consensus 656 ~l~g~~~~~~~~~~~a~~aEl~Pt-------~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ 727 (742)
T TIGR01299 656 CLFGGLSIAAWNALDVLTVELYPS-------DKRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGG 727 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHH
Confidence 888888888889999999999999 9999999999999999999999999988764 45677777776666655
Q ss_pred HHHHHh
Q 007910 219 VMFLLG 224 (585)
Q Consensus 219 ~~~~~~ 224 (585)
++.++.
T Consensus 728 ll~~~L 733 (742)
T TIGR01299 728 LLALKL 733 (742)
T ss_pred HHHHhC
Confidence 554443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=129.94 Aligned_cols=164 Identities=15% Similarity=0.138 Sum_probs=130.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 007910 29 FEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAII 108 (585)
Q Consensus 29 ~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~ 108 (585)
+..+.++....+++.|+.+ .|++ +.+.....+.++..++.++.|+++||+ ||||.+..+..+..++..+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~-- 300 (399)
T PRK05122 227 LASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAP-- 300 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhc--
Confidence 3345556666777788754 4653 445666778888889999999999996 999999988888888777666543
Q ss_pred CCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 007910 109 PAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYM 188 (585)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 188 (585)
+.+.+++.+++.|++.+...+.......|.+|+ ++|+++.++++...++|..
T Consensus 301 ---------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ 352 (399)
T PRK05122 301 ---------------------SPWMALIGAALTGFGFSLVFPALGVEAVKRVPP-------QNRGAALGAYSVFLDLSLG 352 (399)
T ss_pred ---------------------cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHHHHHHHHH
Confidence 455677888999999998888888888898888 8899999999999999999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 189 ASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 189 ~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+++.+.+++.+..||+..|++.+.+.++++++.+..++
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999899999999887777766666555444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-11 Score=124.80 Aligned_cols=170 Identities=22% Similarity=0.287 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchH-HHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFR-VIALGTFTALLGM 99 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-~l~~~~~~~~~g~ 99 (585)
+...+..++..........+.+.|+.+.+|.++.+.+.+.....++..++.++.|+++||+ |||+ .+..+.++..++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~ 256 (352)
T cd06174 178 LLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAALGL 256 (352)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHH
Confidence 3444455566666667777888888887899999999999999999999999999999996 9999 9999999988888
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
+...... +.+.+++..++.|++.+...+...+++.|..|+ ++|++.++.+
T Consensus 257 ~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 306 (352)
T cd06174 257 LLLALAP-----------------------SLALLLVALLLLGFGLGFAFPALLTLASELAPP-------EARGTASGLF 306 (352)
T ss_pred HHHHHhc-----------------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCH-------HHHHHHHHHH
Confidence 8877654 567788899999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 180 YASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
+...++|..++|.+.+++.+..+|+..|.+.+++.+++.+..
T Consensus 307 ~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 307 NTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999988999999988877776665554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.4e-11 Score=129.09 Aligned_cols=170 Identities=16% Similarity=0.096 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+...+..++...+++++..+++.|+++++|++..+.+.+.+.+.++..++.+++|+++||+ |||+.+.....+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~~~ 285 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALVLM 285 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHHHH
Confidence 34444455666677788889999999999999999999999999999999999999999996 99999887776666655
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
.+..... +.....+..++.|++.+...+...++..+..|. .+++..+..
T Consensus 286 ~~~~~~~-----------------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~ 334 (394)
T PRK03699 286 YLFVNTD-----------------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV--------ASPKLVNFI 334 (394)
T ss_pred HHHHHcC-----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------CCHHHHHHH
Confidence 4444332 334455566778888777778877777777764 234556777
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 180 YASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
....++|..++|.+.|++.+..|++..|++.+++.+++.++.
T Consensus 335 ~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 335 LTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 778899999999999999999999999887766665554433
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.6e-11 Score=125.48 Aligned_cols=164 Identities=11% Similarity=0.088 Sum_probs=128.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 007910 27 EAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTA 106 (585)
Q Consensus 27 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~ 106 (585)
.++.....+.....++.|+.+++|.++.+.+.+..........+.+++|+++||+ |||+++..+.++..+.........
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 286 (375)
T TIGR00899 208 CTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADN 286 (375)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444556678898889999999999888887777888889999999996 999999887766555554444433
Q ss_pred hcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 007910 107 IIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLS 186 (585)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 186 (585)
+.+.+++.+++.|++.+...+....+..|.+|+ + +++++++++...++|
T Consensus 287 -----------------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~g 335 (375)
T TIGR00899 287 -----------------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-------R-AGAATTLYTNTGRVG 335 (375)
T ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------h-hhHHHHHHHHHHHHH
Confidence 456667778888888888888888888888875 3 458899999999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 187 YMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 187 ~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
..++|.+++++.+..||+..|++.+++.+++.++..
T Consensus 336 ~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 336 WIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 999999999999989999999888777766665544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.3e-11 Score=126.74 Aligned_cols=188 Identities=15% Similarity=0.081 Sum_probs=143.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHH-HhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCc-hHHHH
Q 007910 12 SKKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLIL-EYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGR-FRVIA 89 (585)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-r~~l~ 89 (585)
..+.+||.+++..+.+++....++.+....-.|+++ +.+-+.+-.|+++++..++..+..+..|+...|. |+ |+-++
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pli 106 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPLI 106 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCHH
Confidence 346889999999999999999999888889999865 4677888889999999999999999999999996 75 77778
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcch
Q 007910 90 LGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNE 169 (585)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 169 (585)
.|.++.++|.++.......|+ ...+.++++|++.|+|.+.. ...-+|+++....
T Consensus 107 ~s~ii~~~g~llY~~l~~~~~------------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~------- 160 (488)
T KOG2325|consen 107 VSFLIAIIGNLLYLALAYVPN------------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTV------- 160 (488)
T ss_pred HHHHHHHHHHHHHHHHHhccc------------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCc-------
Confidence 899999999999855443443 15788999999999998774 6678999998777
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----c------cc---hhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 170 RILQTFFNWYYASVGLSYMASITLIVYIQD----K------AG---WVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 170 ~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~----~------~g---~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+.|.++++....+..+|..+||.+...+.. . .. |..+-|+.+++.++..++..++.+
T Consensus 161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~ 230 (488)
T KOG2325|consen 161 EDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK 230 (488)
T ss_pred cchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence 566777777777667777777766554331 1 11 234445555555555555544444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=126.06 Aligned_cols=163 Identities=13% Similarity=0.076 Sum_probs=129.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL 104 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~ 104 (585)
...++..+.........+.|. +++|.++.+.+.+...+.++..++.++.|+++||+ |||+.+.++.++..++.++..+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 289 (377)
T TIGR00890 212 LSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVGMAAMLF 289 (377)
T ss_pred HHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHH
Confidence 333444444444445555564 66899999999999999999999999999999996 9999999998888888776665
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVG 184 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (585)
..+ .+...++...++.+++.+...+..++++.|.+|+ ++|++.+++++...+
T Consensus 290 ~~~---------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~ 341 (377)
T TIGR00890 290 IPM---------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGP-------ANSAANYGFLYTAKA 341 (377)
T ss_pred ccc---------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhh-------hhhhhHhHHHHHHHH
Confidence 430 0123344566778888888888888999999998 889999999999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 007910 185 LSYMASITLIVYIQDKAGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 185 ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~ 217 (585)
+|..++|.+.+++.++.||+..|.+.+++.+++
T Consensus 342 ~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 342 VAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 999999999999999999999998877665544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.9e-11 Score=126.71 Aligned_cols=176 Identities=11% Similarity=0.018 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCC--------hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMS--------GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s--------~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
.++..++..........+.+.|+.+ .|.+ ..+.+.+.++..+...++.++.|+++||+ |||+++.++.++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~~~ 290 (418)
T TIGR00889 213 FFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSLVA 290 (418)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHH
Confidence 3344444444444445666777654 4544 35668888888899999999999999996 999999999998
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
..++..++......+ .+.+.+++.+++.|++.+...+....++.|.+|+ +.|++
T Consensus 291 ~~v~~~l~~~~~~~~-------------------~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~-------~~~g~ 344 (418)
T TIGR00889 291 WALRFGFFAYGDPEY-------------------FGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPV-------HIRAS 344 (418)
T ss_pred HHHHHHHHHHcCcch-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHH
Confidence 888876666532000 1245677788999999998889999999999999 99999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhcc------cchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 175 FFNWYY-ASVGLSYMASITLIVYIQDK------AGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 175 ~~~~~~-~~~~ig~~~g~~~~~~l~~~------~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
++++.+ ...++|..+||.++|++.++ +||+..|.+.+++.++..+++++..+
T Consensus 345 ~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 345 AQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999997 56789999999999999886 46999998877766655555544443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-10 Score=125.79 Aligned_cols=175 Identities=17% Similarity=0.067 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
.+...++..+.+|....+++.|+.+.+|++......+.....+...++.++.|+++||+ ||||++..+.++..++.+.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~~~~~~~~ 333 (438)
T PRK09952 255 IIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIGTLSAFPF 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHH
Confidence 34456666778888889999999999999988766666666777788889999999996 99999988877655544333
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
...... ..+...++...++.+++.+...+...++++|.+|+ +.|+++.++.+..
T Consensus 334 ~~~~~~-------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-------~~r~tg~g~~~~~ 387 (438)
T PRK09952 334 FMALEA-------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGA-------SYRYSGAGVGYQV 387 (438)
T ss_pred HHHHHc-------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc-------chhHHHHhHHHHH
Confidence 322100 00233344455666788888888889999999999 7888888875544
Q ss_pred -HHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHh
Q 007910 183 -VGLSYMASITLIVYIQDKA--GWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 183 -~~ig~~~g~~~~~~l~~~~--g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
..+|+.++|.+.+++.+.. +|+..+.+.++..+++.+..+..
T Consensus 388 ~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~ 432 (438)
T PRK09952 388 ASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 4589999999999997743 47777776666666665555443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=127.10 Aligned_cols=166 Identities=15% Similarity=0.029 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+..+...++....++....+++.|+++++|.++.+.+.+.....+...++.+++|+++||+ |||+.++.+..+..+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~ 299 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAALLA 299 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 55555666777777888888899999889999999999999999999999999999999996 99998876555444333
Q ss_pred -HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 100 -ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
....... . ..+.+.++...++.|++.+...+...+++.|.+|+ ++|+++++.
T Consensus 300 ~~~~~~~~-~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~ 352 (394)
T TIGR00883 300 VPLLMALL-D-------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT-------EVRYTGASL 352 (394)
T ss_pred HHHHHHHh-c-------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc-------cceeeEeee
Confidence 2221111 0 01445566777888888888889999999999999 777888886
Q ss_pred -HHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHH
Q 007910 179 -YYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGL 213 (585)
Q Consensus 179 -~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~ 213 (585)
+..+..+|..++|.+++++.++.| |+..++..+..
T Consensus 353 ~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~ 389 (394)
T TIGR00883 353 AYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAAL 389 (394)
T ss_pred hhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHH
Confidence 445567888899999999999888 87776654443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-11 Score=109.95 Aligned_cols=132 Identities=18% Similarity=0.194 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHH
Q 007910 61 FLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVL 140 (585)
Q Consensus 61 ~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 140 (585)
..+.++..++.++.|+++||+ |||+.+..+..+..++.+...... +.+.+++.+++
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~ 60 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSS-----------------------NITVLIIARFL 60 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhc-----------------------cHHHHHHHHHH
Confidence 345677888999999999996 999999999988888887776654 66778889999
Q ss_pred HHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007910 141 MSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 141 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (585)
.|++.+...+...+++.|.+|+ ++|++..+..+...++|..++|.+.+++.+..+|++.|++.....++..+.
T Consensus 61 ~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADIYPP-------EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFIL 133 (141)
T ss_pred HHHHHHHHHHhHHHHHHHHCCh-------hhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 889999999999999999999999999998889999988877666655554
Q ss_pred HHH
Q 007910 221 FLL 223 (585)
Q Consensus 221 ~~~ 223 (585)
...
T Consensus 134 ~~~ 136 (141)
T TIGR00880 134 LAF 136 (141)
T ss_pred Hhh
Confidence 443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=125.55 Aligned_cols=159 Identities=16% Similarity=0.185 Sum_probs=128.5
Q ss_pred HHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007910 31 KVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPA 110 (585)
Q Consensus 31 ~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~ 110 (585)
.+.+..+..+.+.|+.+ .|++. .+.....+.++..++.++.|++.||+ ||||.+..+..+..++.++..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~---- 300 (392)
T PRK12382 229 GVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAP---- 300 (392)
T ss_pred HHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHcc----
Confidence 34455555666777654 46553 45566677778889999999999996 999999999888888877766543
Q ss_pred CCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 007910 111 ARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMAS 190 (585)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 190 (585)
+.+..++..++.|++.+...+...+.+.|.+|+ ++|++.+++++...++|..++
T Consensus 301 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~~~~~g~~ig 354 (392)
T PRK12382 301 -------------------TAWVALAGAALTGAGCSLIFPALGVEVVKRVPS-------QVRGTALGGYAAFQDIAYGVS 354 (392)
T ss_pred -------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 455667788899999998888888888999998 899999999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 191 ITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 191 ~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
|.+.+++.++.||+..|.+.+.+.+++.++.+.
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999887777666655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=124.33 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=127.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhCCChh---hHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 007910 28 AFEKVAGVGLHANMIFYLILEYHMSGP---EGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL 104 (585)
Q Consensus 28 ~~~~~~~~~~~~~~~~yl~~~l~~s~~---~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~ 104 (585)
++.......+...++.|+.+..+.... ..+.+..+..++..++.+..|+++||+ |||+++..+.++..++.+...+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 333344444556677777665442221 234455566677788889999999996 9999999988877777666554
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVG 184 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (585)
.. +.+.+++.+++.|++.+...+...+++.+..|+ +.|++.+++++...+
T Consensus 308 ~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~ 357 (408)
T PRK09874 308 VQ-----------------------TPLQLGILRFLLGAADGALLPAVQTLLVYNSSN-------QIAGRIFSYNQSFRD 357 (408)
T ss_pred hc-----------------------cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCc-------ccceeeehHHHHHHH
Confidence 33 456677888999999999999998888888887 778899999999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 185 LSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 185 ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
+|..+||.++|++.++.||+..|++.+++.+++.+..++.
T Consensus 358 ~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 358 IGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887777666655443
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=121.14 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+.+.+..++...+++++..+++.|+.+ .|++..+++...+.+.++..++.++.|+++||+ |||+.++.+..+..++.
T Consensus 207 ~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~~ 284 (393)
T PRK09705 207 AWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVGF 284 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHH
Confidence 3444445556677888888999999875 799999999999999999999999999999996 99999998887777776
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
.++.... . +...++ .++.|++.+...|.......+.++++ ++|++.++..
T Consensus 285 ~~~~~~~---~-------------------~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~------~~~g~~~g~~ 334 (393)
T PRK09705 285 CGFIWLP---L-------------------QLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQP------AIAGKLVAFM 334 (393)
T ss_pred HHHHHcc---c-------------------hHHHHH--HHHHHHhccchHHHHHHHHHhhcCCH------HHHHHHHHHH
Confidence 6554322 0 112222 24567888888887777777777542 6789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 180 YASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+...+++..++|.+.+++.+..| |...|++.+...++.+++.....+
T Consensus 335 ~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 335 QGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999876 778887776666655555444333
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-11 Score=126.68 Aligned_cols=159 Identities=10% Similarity=0.008 Sum_probs=126.0
Q ss_pred hHhHHHHHHHHHHHHh---CCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007910 34 GVGLHANMIFYLILEY---HMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPA 110 (585)
Q Consensus 34 ~~~~~~~~~~yl~~~l---~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~ 110 (585)
+......++.|+.+.+ +.+..+.+.+.++..+...++.+++|+++||+ |||+.+..+.++..++..++.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~~---- 313 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFAT---- 313 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhcc----
Confidence 3334445667766543 56667888999999999999999999999996 999999999888888887777654
Q ss_pred CCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH-HHHHHHHHHHH
Q 007910 111 ARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW-YYASVGLSYMA 189 (585)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~ig~~~ 189 (585)
+.+.++..+++.|++.+...+....++.|.+|+ +.|++..+. ++...++|..+
T Consensus 314 -------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~lg~~i 367 (420)
T PRK09528 314 -------------------GPLEVSILKLLHAFEVPFLLVGVFKYITLNFDV-------RLSATIYLVGFQFAKQLGAVF 367 (420)
T ss_pred -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------cceeeeeeehHHHHHHHHHHH
Confidence 566677888999988888777778888999988 667776654 56778899999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 190 SITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 190 g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+|.+.|++.+..||+..|.+.+++.++..++.+.
T Consensus 368 g~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 368 LSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876665554444433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=122.35 Aligned_cols=165 Identities=14% Similarity=0.013 Sum_probs=127.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLT 105 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~ 105 (585)
..++....++.+..+++.|+.+ .|+++.+.+.+...+.++..++.++.|+++||+ |||+.+..+.+...++.....+.
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~ 305 (406)
T PRK11551 228 SYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLAALAAA 305 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445566677778888764 799999999999999999999999999999996 99999988766666665554443
Q ss_pred hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007910 106 AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185 (585)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 185 (585)
. +.+.+.+..++.|++.+...+...++..|.+|+ ++|++..++.+....+
T Consensus 306 ~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~ 355 (406)
T PRK11551 306 P-----------------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPT-------QVRGTGVGAAVAVGRL 355 (406)
T ss_pred C-----------------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcch-------hhhhhhhhHHHHhhhH
Confidence 2 344455666778887777788889999999999 8899999999999999
Q ss_pred HHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 007910 186 SYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 186 g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~ 222 (585)
|..+||.+.|++.++.+ |...+++...+.+++..+.+
T Consensus 356 g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (406)
T PRK11551 356 GSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL 393 (406)
T ss_pred HHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988654 55555555545444444443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-10 Score=118.88 Aligned_cols=171 Identities=11% Similarity=-0.036 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
.++..++.....++...+++.|+.+.+|++..+++++...+.++..++.++.|+++||+ |||+.+ .+..+..++..+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~~~l 287 (390)
T PRK03545 210 LYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCLLLL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHHHHH
Confidence 34444455555666667788888888999999999999999999999999999999996 987654 4444444443333
Q ss_pred H-HhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 103 W-LTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 103 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
. ... +.+.+++..++.|++.+...+...+.+.+..| +.|+++++++..
T Consensus 288 ~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~g~~~~ 336 (390)
T PRK03545 288 LPAAN-----------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP--------DATDVAMALFSG 336 (390)
T ss_pred HHHhc-----------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC--------CcHHHHHHHHHH
Confidence 2 222 45667777888888887777777777777655 456788998888
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 182 SVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
..++|..+||.++|++.+++|++..|+..+.+.+++++......+
T Consensus 337 ~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 337 IFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999999999999998888777776666555443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=120.00 Aligned_cols=180 Identities=17% Similarity=0.100 Sum_probs=139.3
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhccc-CchHHHHHHHHH-H
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFL-GRFRVIALGTFT-A 95 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Grr~~l~~~~~~-~ 95 (585)
|.+|.+++.+++.-+.-|++..+.+.|+.+..|+|...+++..+.|-.++..++++.||+|||++ |||...-+.+.+ .
T Consensus 252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i 331 (448)
T COG2271 252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI 331 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 66788888999999999999999999999999999999999999999999999999999999998 666554333222 2
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
+++.+...+++ .+|+.+..+..+++|+-.-+-.-.+-....|..|+ +.-+++
T Consensus 332 ~~~~~~~w~~~---------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK-------~AaGtA 383 (448)
T COG2271 332 TASLVLYWLAP---------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPK-------KAAGTA 383 (448)
T ss_pred HHHHHHHHcCC---------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccH-------hhccch
Confidence 22333333322 12567777777888876655444455566788898 777899
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 176 FNWYYASVGL-SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 176 ~~~~~~~~~i-g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
.+...++..+ |+..+....+++.|.+||...|.+-.+..+++.+++....
T Consensus 384 ~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~ 434 (448)
T COG2271 384 TGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVW 434 (448)
T ss_pred hchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9998888888 8999988899999999999999876666665555554443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.2e-10 Score=119.15 Aligned_cols=169 Identities=8% Similarity=-0.025 Sum_probs=141.0
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
|..+..++..++...+.+...++.+.|+++ +|.++.+.+.+.+...+...++.++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 334555566677777777888889999865 899999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
...++.+.+ +.+.+++..++.|+..+...+....++.+. |+ +.|+++.+
T Consensus 283 ~~~~~~~~~-----------------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~-------~~~~~~q~ 331 (382)
T TIGR00902 283 RWAIIGAIE-----------------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PG-------SEIAKLQA 331 (382)
T ss_pred HHHHHHhHh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CH-------hhHHHHHH
Confidence 988887755 677788899999999999999999999987 76 77888899
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007910 178 WYY-ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 178 ~~~-~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (585)
+++ ....+|..+||.++|++.|+.|+ ..|++.+.+.++++++
T Consensus 332 ~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 332 LYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 876 46689999999999999999886 5566666555555433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=121.67 Aligned_cols=159 Identities=11% Similarity=-0.037 Sum_probs=130.2
Q ss_pred hHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 007910 34 GVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARP 113 (585)
Q Consensus 34 ~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~ 113 (585)
.++....++.|+.+.+|.++.+.+++.+...++..++.++.|+++||. ++++.+..+.++.+++.+++.+..
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~------- 310 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMP------- 310 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccc-------
Confidence 345667788898888999999999999999999999999999999995 888888888888777776665533
Q ss_pred CCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007910 114 PKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITL 193 (585)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 193 (585)
+.+..++..++.|++.+...+...+++.|.+|+ +.|++.+++++...++|..+||.+
T Consensus 311 ----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~~g~~l 367 (417)
T PRK10489 311 ----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPD-------EMLGRINGLWTAQNVTGDAIGAAL 367 (417)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HHHHHHHHHHHHHHhhhHhHHHHH
Confidence 455566777888888887777778889999998 889999999999999999999999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 194 IVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 194 ~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
.|++.+..|++..+++.+.+.++..++...
T Consensus 368 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 397 (417)
T PRK10489 368 LGGLGAMMTPVASASASGFGLLIIGVLLLL 397 (417)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 999999989888887666554444444333
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.6e-10 Score=119.64 Aligned_cols=176 Identities=17% Similarity=0.074 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHH-HHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRV-IALGTFTALL 97 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-l~~~~~~~~~ 97 (585)
..+..++..++.....+....+++.|+.+.+|.++.+.+++.....+...++.+++|+++||+ |||+. +........+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 216 RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHH
Confidence 345556667777777788888899999999999999999999999999999999999999996 99862 1111111111
Q ss_pred HH---HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 98 GM---ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 98 g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
+. .+..+..+. ..+....+....+.+++.+ ..+...+++.|.+|+ ++|++
T Consensus 295 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~~g~ 347 (399)
T TIGR00893 295 AGLVLSLLMFATNY-------------------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPG-------NIAGL 347 (399)
T ss_pred HHHHHHHHHHHhcc-------------------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcCh-------hHHHH
Confidence 11 111111100 0022233333333333444 788999999999999 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~ 222 (585)
.+++.+...++|..++|.+.+++.+..| |+..|++.++..+++.+..+
T Consensus 348 ~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 348 TGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888 99998877766665555443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.2e-10 Score=118.29 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=122.4
Q ss_pred HHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007910 32 VAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAA 111 (585)
Q Consensus 32 ~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~ 111 (585)
+.+.....+++.|+++ .|.++.+.+...+...+...++.++.|+++||+ |||+++..+.++..++.+... .
T Consensus 214 ~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~--~----- 284 (381)
T PRK03633 214 IVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML--S----- 284 (381)
T ss_pred HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh--h-----
Confidence 3444455667888765 699999999999999999999999999999996 999999888877777665432 1
Q ss_pred CCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHH
Q 007910 112 RPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASI 191 (585)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~ 191 (585)
. ...+..+.+.|++.+...|...+.+.|..|+ ++++...+.++...++|..+||
T Consensus 285 ------------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~-------~~~~~~~~~~~~~~~lG~~igp 338 (381)
T PRK03633 285 ------------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEH-------HELVAMNQALLLSYTVGSLLGP 338 (381)
T ss_pred ------------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234456677777777789999999999887 6667777887888899999999
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 192 TLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 192 ~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
.++|++.++.||++.|.+.+.+.++...+.+
T Consensus 339 ~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 339 SFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887666665544443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=122.08 Aligned_cols=151 Identities=11% Similarity=0.074 Sum_probs=119.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhc
Q 007910 29 FEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAII 108 (585)
Q Consensus 29 ~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~ 108 (585)
+..+........++.|+.+++|++..+.+++.....++..++.++.|+++||+ |||+.+.++.++..+.........
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~-- 325 (405)
T TIGR00891 249 FANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPVFAIG-- 325 (405)
T ss_pred HHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHHHhC--
Confidence 33444455667788999999999999999999999999999999999999996 999999887765533222222111
Q ss_pred CCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHH
Q 007910 109 PAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYM 188 (585)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~ 188 (585)
.+.+.+.+..++.++..+...+..++++.|.+|+ ++|++.+++.+...++|..
T Consensus 326 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~~~~~~g~~ 378 (405)
T TIGR00891 326 --------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPT-------DQRAAGLGFTYQLGNLGGA 378 (405)
T ss_pred --------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCc-------chhHHHhhHHHHHHHHHHH
Confidence 1345556666777777777778888999999998 8899999999999999999
Q ss_pred HHHHHHHHhhcccc-hhHHHHH
Q 007910 189 ASITLIVYIQDKAG-WVVGFGV 209 (585)
Q Consensus 189 ~g~~~~~~l~~~~g-~~~~f~~ 209 (585)
++|.+.|++.+..| |+..+..
T Consensus 379 ~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 379 LAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHHHHHHHHHHhccccchhHHh
Confidence 99999999999888 7766543
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=124.40 Aligned_cols=148 Identities=15% Similarity=0.071 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 007910 36 GLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPK 115 (585)
Q Consensus 36 ~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~ 115 (585)
.....++.|+++++|++..+++.+.....++..++.+++|+++||+ |||+++..+.++..++.++.....
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~--------- 362 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG--------- 362 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence 4567889999889999999999999999999999999999999996 999998887766655544433221
Q ss_pred CCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007910 116 CNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIV 195 (585)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 195 (585)
..+.+......++.+....+..+..++++.|.+|+ ++|++.+++++...++|..+||.++|
T Consensus 363 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~g~~lgp~l~g 423 (496)
T PRK03893 363 ------------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDT-------EQRAAGLGFTYNVGALGGALAPILGA 423 (496)
T ss_pred ------------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCH-------HHhhcccchhhhhhhHHHHHHHHHHH
Confidence 01333333444444433334456778889999998 88999999999999999999999999
Q ss_pred HhhcccchhHHHHHHHH
Q 007910 196 YIQDKAGWVVGFGVPVG 212 (585)
Q Consensus 196 ~l~~~~g~~~~f~~~~~ 212 (585)
++.+.+||+..+...+.
T Consensus 424 ~l~~~~g~~~~~~~~~~ 440 (496)
T PRK03893 424 LIAQRLDLGTALASLSF 440 (496)
T ss_pred HHhccCChHHHHHHHHH
Confidence 99999999887755443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.2e-10 Score=122.89 Aligned_cols=175 Identities=14% Similarity=0.116 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCc--hHHH-HHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGR--FRVI-ALGTFTAL 96 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr--r~~l-~~~~~~~~ 96 (585)
.+..++..++.....|++..+++.|+++..|++..+++.....+.++..++.+++|+++||+ ++ |+.. +....+..
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 255 LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHHHH
Confidence 44555566666677788889999999998999999999888888999999999999999995 43 4332 22222333
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++.+.+.+.. . .+.+..++..++.|.+..........+..|.+|+ +.|++++
T Consensus 334 ~~~~~~~~~~--~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~ 385 (452)
T PRK11273 334 IATIVYWLNP--A-------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAA 385 (452)
T ss_pred HHHHHHHHhc--c-------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCh-------hhhhhHH
Confidence 3333222211 0 0223333444444443322222334566799998 8899999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 177 NWYYASVGLSYMA-SITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 177 ~~~~~~~~ig~~~-g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
++.+...++|+.+ +|.+.+++.+..||+..|++.++..+++.+....
T Consensus 386 g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 386 GFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 9999888888654 7999999999999999998877766666555443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-09 Score=111.98 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
+.+..|.+..+| +...+.|...+|.+.+....+.+-|+.||+ |-|.+++++.++..+|..+=..+. .|.+-+
T Consensus 65 a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~~----- 136 (480)
T KOG2563|consen 65 APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVPP----- 136 (480)
T ss_pred hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Cccccc-----
Confidence 445677777788 777788999999999999999999999996 999999999999999998887765 332110
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
..-....+.+..+.+.+...+....+-+.+-+||+ ++|+.+...-.++..+|.++|.++...+.
T Consensus 137 ---------~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~-------~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 137 ---------LFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPP-------DQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred ---------cchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCc-------chhhhhhhHHHhcchHHHHHHhhccceec
Confidence 01123677888888888888888877888888999 89999888888887788887776666655
Q ss_pred cc
Q 007910 199 DK 200 (585)
Q Consensus 199 ~~ 200 (585)
.+
T Consensus 201 ~~ 202 (480)
T KOG2563|consen 201 PS 202 (480)
T ss_pred CC
Confidence 43
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-09 Score=110.12 Aligned_cols=83 Identities=7% Similarity=-0.070 Sum_probs=69.7
Q ss_pred cchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc-------
Q 007910 128 PRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK------- 200 (585)
Q Consensus 128 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~------- 200 (585)
..+++.++++.+++|.|.+...+..++++++..++ +++.+.+++.+.+..+|..++|.+++.+...
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~-------~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~ 79 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPI-------ETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSM 79 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCc-------chHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhh
Confidence 34789999999999999999999999999999998 6678889999999999999999999977632
Q ss_pred ---------cchhHHHHHHHHHHHHH
Q 007910 201 ---------AGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 201 ---------~g~~~~f~~~~~~~~i~ 217 (585)
..|+++|++.+.+.++.
T Consensus 80 ~~~~~~~~~~~~~~~yl~ia~~~~~~ 105 (310)
T TIGR01272 80 QVATANAEAAKVHTPYLLLAGALAVL 105 (310)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 36888888555444333
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-10 Score=119.22 Aligned_cols=188 Identities=15% Similarity=0.091 Sum_probs=151.2
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCch--HHHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRF--RVIALGT 92 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr--~~l~~~~ 92 (585)
++.|.+..-++..++.+-+...+......|.++++|++..+...+..+.++.+.+++++.|++.||+ |.| ++++.+.
T Consensus 278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l 356 (477)
T PF11700_consen 278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISL 356 (477)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence 3446666666777777788888889999999999999999999999999999999999999999996 999 8988887
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 93 FTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
+++.+..+...+.. .+.. ...++.+.+++.-++.|+..|...+..-++.+++.|+ ++.
T Consensus 357 ~~~~~i~~~g~~G~-~~~~--------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~-------g~e 414 (477)
T PF11700_consen 357 ILWIIIPLYGLFGF-WPSF--------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP-------GRE 414 (477)
T ss_pred HHHHHHHHHHHHHh-hhcc--------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC-------chh
Confidence 77644333322210 1110 0123667788888899999999999999999999999 667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhC
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
+.+|++|....-..+.+||++.+.+.+..| .|..+....++.++++++++...
T Consensus 415 ~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 415 AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999876 78888777777777766665443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-10 Score=119.72 Aligned_cols=175 Identities=11% Similarity=-0.020 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCc-hHHH-HHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGR-FRVI-ALGTFTALLG 98 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-r~~l-~~~~~~~~~g 98 (585)
+.+.+..++....++++..+++.|+.+++|++..+++...+.+.++..++.+++|+++||+.++ |+.. ....+...+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~ 325 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLS 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHH
Confidence 3444445555666677778899999888999999999999999999999999999999995222 2222 2211111222
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
...+.... . .+........+++|++..........+.+|.+|+ +.|++..++
T Consensus 326 ~~~~~~~~---~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 377 (434)
T PRK11663 326 VGSLWLMP---F------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHK-------EAAGAATGF 377 (434)
T ss_pred HHHHHHcc---c------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccH-------hhHHhHHHH
Confidence 21111111 0 0222233333344443222222334567888888 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
.+...++|..++|.+.+++.+..||+..|++.+++.+++.+....
T Consensus 378 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 422 (434)
T PRK11663 378 VGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP 422 (434)
T ss_pred HHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998877766655544443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.2e-10 Score=120.24 Aligned_cols=170 Identities=9% Similarity=0.020 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc-cCchHHHHHHHHHHH--
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF-LGRFRVIALGTFTAL-- 96 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~-~Grr~~l~~~~~~~~-- 96 (585)
.+..+...++..+.++....+++.|+. ++|++..+++.+.+...++..++.+++|+++||. .++|+...++.....
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~ 321 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNG 321 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHH
Confidence 344445566666777777788889985 4799999999999999999999999999999973 244544444433332
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++.+++.... +.+.+++.+++.|++.++..++..+++.|.+|+ +++++.+
T Consensus 322 l~~ll~~~~~-----------------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~-------~~~g~~~ 371 (455)
T TIGR00892 322 LTHLLCALAG-----------------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGA-------QRFSSAV 371 (455)
T ss_pred HHHHHHHHhc-----------------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhH-------HHHhhHH
Confidence 3333333322 566778889999999999999999999999998 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHH
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKA-GWVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~ 220 (585)
++++...++|..+||.++|++.+.. +|+..|++.+++.+++.+.
T Consensus 372 g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 372 GLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred hHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 9999999999999999999999877 5999998887766655443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-09 Score=115.85 Aligned_cols=175 Identities=12% Similarity=0.061 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHH-HHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIA-LGTFTALLG 98 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~-~~~~~~~~g 98 (585)
.+......++....+++...+++.|++ ++|++..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~~~ 301 (402)
T TIGR00897 224 VLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCGIF 301 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHHHH
Confidence 344445566677788888889998875 5899999999999999999999999999999996 9988764 233333333
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
...+.+.... ..++.+..++..++.|++.+...+ ..+...|.. + ++|++++++
T Consensus 302 ~~~l~~~~~~------------------~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~-------~~~g~~~g~ 354 (402)
T TIGR00897 302 TLALYYIPQH------------------FGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA-P-------KHKGAAMSV 354 (402)
T ss_pred HHHHHHHHHc------------------cCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-c-------chhHHHHHH
Confidence 3232221100 011445566677778887776644 345555643 3 458999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
++...++|..++|.+++++.+..||+..|++.+++.+++.++..+
T Consensus 355 ~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 355 LNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888777666655544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-10 Score=118.81 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=110.1
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH-HHH
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI-LLW 103 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~-~~~ 103 (585)
...++....++++..+.+.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.++.+.++..+... ...
T Consensus 245 ~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 245 LMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888999999988999999999888888899999999999999996 999998876554433221 111
Q ss_pred HhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 007910 104 LTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASV 183 (585)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 183 (585)
..... .+........++.+++.+...+....+..|.+|+ +.|++++++.+...
T Consensus 324 ~~~~~--------------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~-------~~rg~~~g~~~~~~ 376 (434)
T PRK15075 324 WLVAA--------------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPA-------EVRTAGFSLAYSLA 376 (434)
T ss_pred HHHcC--------------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCC-------CccchheeHHHHHH
Confidence 11100 0223344445556666667677777889999999 78889888755444
Q ss_pred H-HHHHHHHHHHHHhhcccchh
Q 007910 184 G-LSYMASITLIVYIQDKAGWV 204 (585)
Q Consensus 184 ~-ig~~~g~~~~~~l~~~~g~~ 204 (585)
+ +++.++|.+.+++.+..|++
T Consensus 377 ~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 377 TAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHhhhHHHHHHHHHHhcCCc
Confidence 4 45778999999999988854
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-08 Score=111.88 Aligned_cols=204 Identities=19% Similarity=0.226 Sum_probs=153.1
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
|..+.++....+....+.+.+...+.-+.+.++++.++.|++.+.+-++..+...+..+.+-|. -|-|.+-+|.+++++
T Consensus 96 k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~l 174 (735)
T KOG3626|consen 96 KMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGL 174 (735)
T ss_pred chHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHH
Confidence 3344444455555555558888888999999999999999999999999999999999999996 888999999999999
Q ss_pred HHHHHHHhhhcCCCC--------CCCCCC-----Cc-------------ccCC--CCCcc-hhHHHHHHHHHHHHhcccc
Q 007910 98 GMILLWLTAIIPAAR--------PPKCNP-----FI-------------EICP--AAKPR-QLGFLFSSFVLMSIGAGGI 148 (585)
Q Consensus 98 g~~~~~~~~~~~~~~--------~~~~~~-----~~-------------~~~~--~~~~~-~~~~~~~~~~l~g~g~g~~ 148 (585)
|.++.++...+..-. ++.+++ |. +.+. ...+. -+.+++++.++.|+|....
T Consensus 175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi 254 (735)
T KOG3626|consen 175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI 254 (735)
T ss_pred HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence 999988643222111 122222 10 0121 11111 1346778999999999999
Q ss_pred ccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------------chhHHHHH
Q 007910 149 RPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKA-------------------GWVVGFGV 209 (585)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~-------------------g~~~~f~~ 209 (585)
++...+|+-|-..+ ++-..++++.+....+|.++|.++++++...+ .|+..|++
T Consensus 255 ~tlGisYiDDnvk~-------~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi 327 (735)
T KOG3626|consen 255 FTLGISYIDDNVKK-------KNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLI 327 (735)
T ss_pred ccCCCccccccccc-------cCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHH
Confidence 99999999888887 66688999999999999999999988865311 27888888
Q ss_pred HHHHHHHHHHHHHHhCcccc
Q 007910 210 PVGLMLFSTVMFLLGSSLYI 229 (585)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~~ 229 (585)
++.+.++..+.++++++..+
T Consensus 328 ~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 328 CGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred HHHHHHHHHHHHHhCcccCc
Confidence 88888777777777666544
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-08 Score=108.71 Aligned_cols=355 Identities=14% Similarity=0.104 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhHhHH---HHHHHHHHHHhCCChh-hHHHHHHHH----HHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLH---ANMIFYLILEYHMSGP-EGANVLFLW----GAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~---~~~~~yl~~~l~~s~~-~~~~i~~~~----~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
+....++..++++... .+...+.....+.... +.+...... .+...+.++.-|.++|++ |||..+....+.
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~ 101 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFG 101 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHH
Confidence 3445555555555444 5555565555443322 223333444 567788889999999997 999999999888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHH--hccccccchhhhhhccCCCCCCCcchhhh
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSI--GAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
..+..+...+.. +++++ +.++ +.+.+.....++++|.... ++|
T Consensus 102 ~~l~~~~~~~~~-------------------------~~~~~---~~~l~g~~~~~~s~~~a~vadis~~-------~~R 146 (463)
T KOG2816|consen 102 TILPALCLLFQG-------------------------YWFFL---LLGLSGGFSAIFSVGFAYVADISSE-------EER 146 (463)
T ss_pred HHHhHHHHHHHH-------------------------HHHhh---hcccccchhhhhhhhhhheeeccch-------hHH
Confidence 888777776632 23333 3333 3344567778889999998 789
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhc
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNR 252 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 252 (585)
...+++.......+..++|.+++++.+..|....|++..+..++..+...+..|+...++.+.. .+ .
T Consensus 147 ~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-~~------------~ 213 (463)
T KOG2816|consen 147 SSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-AT------------L 213 (463)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-cc------------c
Confidence 9999999998899999999999999999999999999988888777766655554222111100 00 0
Q ss_pred CCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 007910 253 HLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMI 332 (585)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (585)
+...+. +...+.. .+.++.... ....|..+..+.... ...
T Consensus 214 ~~~~~~------------------~~~~~~~------------------~~~~~~~~~--~~~~r~~l~l~l~~~--~~~ 253 (463)
T KOG2816|consen 214 RELTPG------------------SLDSSHV------------------ADAFQSLTK--VGPDRLLLLLLLVAF--LSS 253 (463)
T ss_pred cccCCC------------------cccchhh------------------hhhhhhhcc--cCCCccchHHHHHHH--HHH
Confidence 000000 0000000 000000000 011111111111110 111
Q ss_pred HHhhcc-c-chhhhhhcccccccCCcccccCCC---cccchhHHHHHHHHHHhhhhhhh-ccccccCCCCCCCchHHHHH
Q 007910 333 AVTISQ-Y-TFPQLQAKSMDRHIFSEKLKIPPG---SFGVFAILTLTIWVAIYDRVVVP-LLSKFTNRPRGLSYRQRIGI 406 (585)
Q Consensus 333 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~l~~~~~~~-l~~r~~~r~~~~~~~~~~~~ 406 (585)
+--..+ . ..++ ..+... .+... .+.........+..-+ ..| +.+.++.+ +.+..
T Consensus 254 ~~~~~~~~~~~~~----yl~~~f-----~w~~~~~s~~~~~~~~~~~i~~l~----~~~~l~~~l~~~-------~~i~l 313 (463)
T KOG2816|consen 254 LPEAGGASDVLLL----YLKAKF-----GWNKKEFSDLLSLVSILGIISQLL----LLPLLSSILGEK-------RLISL 313 (463)
T ss_pred HHHhcCceeEEEE----EEeeec-----CcCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh-------hHhhH
Confidence 111111 1 1111 111111 12211 1222222222222222 222 23344444 57788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHH
Q 007910 407 GLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVAL 486 (585)
Q Consensus 407 g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~ 486 (585)
|+....+.+.+.++.. +. |+.....+......+..|+..+++.....++.+|+.+++
T Consensus 314 Gl~~~~~~~~~~af~~----------------------~~-w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~ 370 (463)
T KOG2816|consen 314 GLLSEFLQLLLFAFAT----------------------ET-WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGI 370 (463)
T ss_pred HHHHHHHHHHHHHHhc----------------------cc-hhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhH
Confidence 8888888888887765 22 233344555666678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 007910 487 LSLGMAVGNLVGSLIVTILNRVT 509 (585)
Q Consensus 487 ~~~~~~ig~~ig~~l~~~i~~~~ 509 (585)
......+++.+++.+.+.+...+
T Consensus 371 is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 371 ISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999987766554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-09 Score=118.29 Aligned_cols=175 Identities=13% Similarity=0.067 Sum_probs=126.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHH-HHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 24 IANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLF-LWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~-~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
++..++..+..+......+.|+.+++|++..+.+.+.. ...++..++.+++|+++||+ ||||.++++.++.+++.+..
T Consensus 228 ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~~l~~ 306 (491)
T PRK11010 228 LLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVSNAGY 306 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 33334445555566677888888889999999999875 55678999999999999996 99998877666555544333
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
....... .+...+....++..+..|...+...++..+..++ +.+++.+++.+..
T Consensus 307 ~~l~~~~-------------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~-------~~~~t~~gl~~s~ 360 (491)
T PRK11010 307 WLLSITD-------------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNK-------SFSATQFALLSAL 360 (491)
T ss_pred HHHHhcc-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCcHHHHHHHHHH
Confidence 2211000 1333344445555555555556667888888888 6668889999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 183 VGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 183 ~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
.++|..+++.+.|++.+..||+..|.+.+++.++++++....+
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~ 403 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR 403 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888999999999999999888887777766665544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=118.14 Aligned_cols=167 Identities=13% Similarity=0.068 Sum_probs=118.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 007910 40 NMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF 119 (585)
Q Consensus 40 ~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 119 (585)
+...++.+++|++..+.++......++..++.+++|+++||+ |||+.+..+.++..++.+++.+...... ++
T Consensus 305 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---- 376 (481)
T TIGR00879 305 YYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFV---TG---- 376 (481)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhccc---CC----
Confidence 334445567899998888888999999999999999999996 9999999998888887777663220000 00
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 120 IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQD 199 (585)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 199 (585)
.....+...+....++.+.......+....+..|.+|+ +.|+++.++.+...++|.+++|.+.+++.+
T Consensus 377 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~ 444 (481)
T TIGR00879 377 -----SSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPL-------SLRPKGISIAVAANWLANFIVGFLFPTMLE 444 (481)
T ss_pred -----cccchhHHHHHHHHHHHHHHHccccCeehhhhhccCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000222222222222222223346667788999998 889999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 200 KAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 200 ~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+.+|++.|++.+++.+++.++.++..+
T Consensus 445 ~~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 445 SIGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred hcCccceehhHHHHHHHHHHHHheecc
Confidence 889999988877766665555544333
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.9e-09 Score=110.49 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=142.5
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+.++..+.++++...+.|..++++..|+++..|+|.+..+++..+|.++..++.+++|+++|| +.|+++.....+..+
T Consensus 211 p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~ 288 (394)
T COG2814 211 PGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLAL 288 (394)
T ss_pred chHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHH
Confidence 456777778888888999999999999999999999999999999999999999999999999 888888888788777
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
....+.+.. .+.+..++..++.|++.+........-+++.. + +.++.+.+
T Consensus 289 ~~l~l~~~~----------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p-------~~~~~a~s 338 (394)
T COG2814 289 ALLALTFTG----------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-P-------DAADLAGS 338 (394)
T ss_pred HHHHHHHhc----------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-C-------CchHHHHH
Confidence 777766644 14445555556666665544444444444422 2 56788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
++....|+|..+|..++|.+.+++|+....++++++.++++++.+...+
T Consensus 339 l~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 339 LNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888888777766544
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-09 Score=114.82 Aligned_cols=167 Identities=12% Similarity=-0.008 Sum_probs=108.8
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH-hh
Q 007910 28 AFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL-TA 106 (585)
Q Consensus 28 ~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~-~~ 106 (585)
++....+|++..+++.|+.+++|++..+.+....+..+...++.++.|+++||+ |||+.++++.++..+....... ..
T Consensus 253 ~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 253 AAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334677888889999999999999999998888888888888999999999996 9999887766654333322221 11
Q ss_pred hcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHH-
Q 007910 107 IIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL- 185 (585)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i- 185 (585)
+. .+....+....+..++.+...+....+..|.+|+ +.|++++++.+...++
T Consensus 332 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~-------~~r~t~~g~~~~~g~~~ 384 (432)
T PRK10406 332 NV--------------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPA-------QVRALGVGLSYAVANAL 384 (432)
T ss_pred cC--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CccchhhhHHHHHHHHH
Confidence 00 0111111111222223333345567888999999 8899999987766554
Q ss_pred HHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHH
Q 007910 186 SYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 186 g~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~ 223 (585)
++...|.+.+++.. .| |...+++.++..+++.+..+.
T Consensus 385 ~g~~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~ 422 (432)
T PRK10406 385 FGGSAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLM 422 (432)
T ss_pred HHhHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34457777776644 45 555555555555554444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-08 Score=103.60 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=114.2
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc--cC--chHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF--LG--RFRVIALGTFTALLGMILLWLTAIIPAARPP 114 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~--~G--rr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~ 114 (585)
.....|+++++|+++++.....+...+- -..-++.|.++|-+ .| ||.-++++.++..++...+++.. .
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lP-w~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~---~---- 81 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLP-WSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLP---A---- 81 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCc-hHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcc---c----
Confidence 4455678899999999887554444333 24567889999986 22 44445556666555555555433 1
Q ss_pred CCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 115 KCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194 (585)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 194 (585)
...+.....+..++..+|.+..-.+.-+++.|....+. .+|+...+..+....+|.+++..++
T Consensus 82 ------------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p-----~~~g~lqS~~~~~~~~G~lv~~~l~ 144 (433)
T PF03092_consen 82 ------------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREP-----ESRGDLQSFVWGVRSVGSLVGSLLS 144 (433)
T ss_pred ------------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCC-----chhHHHHHHHHHHHHHHHHHHHHhh
Confidence 01134445566677888999999999999999986643 2378888888889999999999999
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 195 VYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 195 ~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
|.+.+..+++..|.+.+++..+..+..++..+
T Consensus 145 G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 145 GPLLDSFGPQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred hhhhhcCCCeEEehHHHHHHHHHHHHHHHhhh
Confidence 99999999999998887666555444444333
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.7e-09 Score=111.09 Aligned_cols=154 Identities=12% Similarity=0.122 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHhHhHH-HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLH-ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
..+..+...++....+++.. ...+.|.++.+|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+.++..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 289 (365)
T TIGR00900 211 LLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIGL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence 34444555555566666565 6667777777999999999999999999999999999999996 999999888777766
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+..+..+.. . +.+.+++..++.|++.+...+...+++.|.+|+ ++|++.++
T Consensus 290 ~~~~~~~~~---------------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~ 340 (365)
T TIGR00900 290 AILVVGLTP---------------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPA-------ELLGRVFG 340 (365)
T ss_pred HHHHHHhhc---------------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHH
Confidence 666655533 0 256677888999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAG 202 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g 202 (585)
+++...++|..++|.++|++.+..|
T Consensus 341 ~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 341 AQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999988654
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=105.93 Aligned_cols=138 Identities=12% Similarity=0.152 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCC
Q 007910 38 HANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCN 117 (585)
Q Consensus 38 ~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 117 (585)
..-+-.+...+.++..++..++-+++++-..+.+.++|++.||.+|-|..-++-..+..+|.+..+.-.
T Consensus 63 p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Gg----------- 131 (459)
T KOG4686|consen 63 PGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGG----------- 131 (459)
T ss_pred chhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhch-----------
Confidence 344556667777888888888999999999999999999999988888776666666677777666432
Q ss_pred CCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 118 PFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYI 197 (585)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l 197 (585)
..+.+|....+|++.|+|.-....+-+.+..-+|.. ++....+++.-....+|..+-..+-+++
T Consensus 132 ---------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKG-------KELn~vfGlqlSvAR~GstvNf~lm~~l 195 (459)
T KOG4686|consen 132 ---------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKG-------KELNFVFGLQLSVARLGSTVNFLLMPFL 195 (459)
T ss_pred ---------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecC-------ccccchhhHHHHHHHhhceeeeeecHHH
Confidence 123689999999999999988888889999999998 8899999999988899988877777777
Q ss_pred hcccc
Q 007910 198 QDKAG 202 (585)
Q Consensus 198 ~~~~g 202 (585)
.+..+
T Consensus 196 y~~~~ 200 (459)
T KOG4686|consen 196 YDTMG 200 (459)
T ss_pred HHHHH
Confidence 66543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-09 Score=114.32 Aligned_cols=157 Identities=14% Similarity=0.032 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.....+...++...++.......+.|++..+|.++.+.+++.....++..++.++.|+++||+ |||+++..+.++..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 344455555666666555556677788778999999999998888888888889999999996 9999999888877777
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
..++.+.. . ..+.+.+.+..++.|++.+...+..+.+..+..|+ +.+++++++
T Consensus 341 ~~~~~~~~---~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~ 393 (471)
T PRK10504 341 SLLFMLVA---L-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD-------NLASSGNSL 393 (471)
T ss_pred HHHHHhcc---c-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH-------HhccchHHH
Confidence 66655422 0 01233445556778888888888889999999998 888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccch
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGW 203 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~ 203 (585)
++....+|..+|+.+++.+.+..|+
T Consensus 394 ~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 394 LSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988776555
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.8e-09 Score=107.97 Aligned_cols=185 Identities=17% Similarity=0.070 Sum_probs=137.6
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
.+..|.+.+..+...-++-++..+++.|+.++++.++.+++.+...+.+.+.+..+.+|+++||+ |.+|++++..+.++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 46778888877777778888889999999999999999999999999999999999999999996 99999999999988
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++..+..+..+... +..+...++...+.+++..|.-......++..+||. +-+...
T Consensus 296 ~~~~~l~~~~~~~~----------------~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~--------~~G~v~ 351 (417)
T COG2223 296 LAAALLSLFLTGFG----------------HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK--------ETGAVT 351 (417)
T ss_pred HHHHHHHccccccc----------------cCcchHHHHHHHHHHHHHhccCcchheeechHHHHh--------hhhHHH
Confidence 88887776431000 011233333333333333444444445556666664 456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
++.....++|+..-|...+...+..| ++..|++...+.+++.++......
T Consensus 352 G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 352 GIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999998888888888888777 888888877777766665554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-09 Score=114.60 Aligned_cols=179 Identities=16% Similarity=0.078 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+...+..++.....|++..+++.|+++..|+++.+++++...+.+...++.+++|+++||+ |+++....+..+..+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~ 331 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTLVT 331 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHHHH
Confidence 33444455555666788889999999998999999999999999999999999999999996 76543333333222221
Q ss_pred HHH-HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 100 ILL-WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 100 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
+.. .+.. .+. .+.+..+...++.|++.............|.+|+ +.|+++.++
T Consensus 332 ~~~~~~~~-~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~ 385 (438)
T TIGR00712 332 IAVIVYWM-NPA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAGF 385 (438)
T ss_pred HHHHHHHh-cCC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcCh-------hheeeehhh
Confidence 111 1111 000 0222233333444443322222223456788998 889999999
Q ss_pred HHHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 179 YYASVGLSY-MASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 179 ~~~~~~ig~-~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
.+...++|+ .++|.+.|.+.++.||...|++.+...+++.+..++..
T Consensus 386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 988888874 68999999999999999998877666655555544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.1e-09 Score=110.70 Aligned_cols=146 Identities=12% Similarity=0.017 Sum_probs=107.2
Q ss_pred hHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 007910 34 GVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARP 113 (585)
Q Consensus 34 ~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~ 113 (585)
.+.+..+++.|+.+ .|.+..+.+.+.....++..++.++.|+++||+ |||+.+..+.++..++.++..... .
T Consensus 247 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~---~--- 318 (426)
T PRK12307 247 NWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIP---Q--- 318 (426)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHc---c---
Confidence 34456678888765 699999999888999999999999999999996 999999888877666554443221 0
Q ss_pred CCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007910 114 PKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITL 193 (585)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 193 (585)
.+...+....+..+++..+..+..+.++.|.+|+ +.|++++++.+...++|..++|.+
T Consensus 319 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~~~~~gp~~ 376 (426)
T PRK12307 319 ---------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL-------EVRGLGTGLIYNLAATSGTFNSMA 376 (426)
T ss_pred ---------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH-------HHHhhhhhHHHHHHhHHHHHHHHH
Confidence 0112122222223333334445667888999999 889999999999999999999999
Q ss_pred HHHhhcccchhHHHHH
Q 007910 194 IVYIQDKAGWVVGFGV 209 (585)
Q Consensus 194 ~~~l~~~~g~~~~f~~ 209 (585)
.+++.+..|+....++
T Consensus 377 ~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 377 ATWLGITMGLGAALTF 392 (426)
T ss_pred HHHHHHcccHHHHHHH
Confidence 9999998886654333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-08 Score=108.31 Aligned_cols=164 Identities=11% Similarity=-0.003 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+..++..++....+.+....++.|+. +.|.++.+.+.+.+...+...+..++.|++.||+ |+|+.+..+.+...++.
T Consensus 207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~~~ 284 (382)
T PRK11128 207 VWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVVRW 284 (382)
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
Confidence 344444455555666666677888885 5899999999999988888888999999999996 99999999998888887
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
+++...+ +.+.+++..++.|++.+...+....+..+. ++ +++++..+.+
T Consensus 285 ~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~ 333 (382)
T PRK11128 285 GLMGSTT-----------------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PG-------SEVIRLQALY 333 (382)
T ss_pred HHHHhhh-----------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CH-------hhhHHHHHHH
Confidence 7666544 667788889999999998888888888776 44 4557778876
Q ss_pred H-HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 007910 180 Y-ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFS 217 (585)
Q Consensus 180 ~-~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~ 217 (585)
. ....+|..+||.++|++.+..|+. .|+..+++.+++
T Consensus 334 ~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~ 371 (382)
T PRK11128 334 SALAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence 5 555778899999999999988874 555544444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=109.73 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=112.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccc
Q 007910 43 FYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEI 122 (585)
Q Consensus 43 ~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 122 (585)
.++.+++|++..+..+......+...++.+++|+++||+ |||+.++.+.++.+++.+++......+.
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------------ 361 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------------ 361 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc------------
Confidence 344567898887777777778888899999999999996 9999999999999988877764321000
Q ss_pred CCCCCcchhHHHHHHHHHHHHhccc-cccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHh----
Q 007910 123 CPAAKPRQLGFLFSSFVLMSIGAGG-IRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYI---- 197 (585)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l---- 197 (585)
.. .......++.+++.+. ..|...+++.|.+|+ +.|++++++.+...++|..+++.+.+.+
T Consensus 362 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~ 427 (479)
T PRK10077 362 ------PG-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN-------AIRGKALAIAVAAQWIANYFVSWTFPMMDKNS 427 (479)
T ss_pred ------cc-HHHHHHHHHHHHHHhccccchhHHHhHhhCCh-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc
Confidence 01 1222333444444443 346778999999998 8999999999999999988886665543
Q ss_pred --hcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 198 --QDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 198 --~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
.+.++|+..|++.++..+++.++.++..+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 428 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred chhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 45678888888776655555555444333
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-08 Score=106.73 Aligned_cols=172 Identities=13% Similarity=-0.054 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
+......++....++......+.|+.+++|+++.+.++......++..++.++.|+++||+ |+|+.+.++.++.+++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g~~ 296 (406)
T PRK15402 218 VAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAGLL 296 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 3333333344444555556677888888999999998887777788889999999999996 999999999888888877
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
+........ ..+.+.++++.++.|+|.+...+....... ..++ ++|++..+.++
T Consensus 297 ~~~~~~~~~------------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~-~~~~-------~~~g~~~~~~~ 350 (406)
T PRK15402 297 LAALATVIS------------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTL-FSSD-------VSKGTVSAAMG 350 (406)
T ss_pred HHHHHHHcc------------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHh-hhcc-------ccccHHHHHHH
Confidence 776533110 114556677888899998887776655443 2233 56789999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007910 181 ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 181 ~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~ 219 (585)
+...+|..+|+.+.+++.+..++....+..++..++.+.
T Consensus 351 ~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 389 (406)
T PRK15402 351 MLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLWLL 389 (406)
T ss_pred HHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999998877766555554444444333
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.8e-09 Score=105.84 Aligned_cols=161 Identities=13% Similarity=0.021 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHH--hCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILE--YHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
.++..+..++...+--++..+++.|+.+. +|+++.+.+...+.+..+..++.++++++.||+ |+||++.++.++.++
T Consensus 142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~~~ 220 (310)
T TIGR01272 142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLAVL 220 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence 33333344443334446667899999854 799999999999999999999999999999996 999999888887777
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+.++..... +.. ...+..+.|++.+.++|...+...+.+|++ ..++. +
T Consensus 221 ~~~l~~~~~-----------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~------~~~as--a 268 (310)
T TIGR01272 221 LSIGAALTH-----------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH------TSQGS--G 268 (310)
T ss_pred HHHHHHHcC-----------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------hhhhH--H
Confidence 765554322 111 223555789999999999999999988862 22333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLM 214 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~ 214 (585)
+. ....+|+.++|.+.|.+.|..|.+..|++..++.
T Consensus 269 i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~ 304 (310)
T TIGR01272 269 IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCY 304 (310)
T ss_pred HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 43 4667999999999999999889888887655443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-09 Score=111.80 Aligned_cols=162 Identities=14% Similarity=-0.040 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHH-HhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHH-HHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLIL-EYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRV-IALGTFTALLG 98 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-l~~~~~~~~~g 98 (585)
+...+..++....++++..+++.|+.+ ..|.+..+++.......++..++.+++|+++||+ |||+. +....++..++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 245 MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFAAAG 323 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHHHHH
Confidence 444556666777888899999999976 3577888999999999999999999999999996 97775 33333333333
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
..+..... +....+.+..+.++|.....+.......|.+|+ ++|++++++
T Consensus 324 ~~~~~~~~-----------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~a~g~ 373 (412)
T TIGR02332 324 WLLASATD-----------------------HNLIQLLGIIMASMGSFSAMAIFWTTPDQSISL-------QARAIAIAV 373 (412)
T ss_pred HHHHHhcC-----------------------CHHHHHHHHHHHHHHhhhhhhHHHhhcccccch-------HHHHHHHHH
Confidence 32221111 111122222223333333333344455667777 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGL 213 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~ 213 (585)
.+...++|..++|.+.+.+.+..| |++.|++.++.
T Consensus 374 ~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 374 INATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 999999999999999999999774 99988766553
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.3e-09 Score=110.13 Aligned_cols=165 Identities=10% Similarity=0.019 Sum_probs=122.1
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHh---CCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 24 IANEAFEKVAGVGLHANMIFYLILEY---HMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~yl~~~l---~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
+...+.....+.......+.|+.+.+ +.+..+.+.+.++..+...++.++.|++.||+ |||+.+.++.++..++..
T Consensus 221 ~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~~l~~~ 299 (396)
T TIGR00882 221 VLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIMSVRII 299 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHH
Confidence 33333333444445456778887765 45566778888888888888999999999996 999999999888888777
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH-H
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW-Y 179 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 179 (585)
+..... +.+.+++.+++.|++.+........+..+..++ +.+++..+. +
T Consensus 300 ~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~at~~~~~~ 349 (396)
T TIGR00882 300 GSSFAT-----------------------TALEVVILKMLHAFEVPFLLVGCFKYITSQFDV-------RLSATIYLIGF 349 (396)
T ss_pred HHHhcC-----------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-------ceEEEeehHHH
Confidence 666543 556677778888888766555555566666666 566676665 5
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007910 180 YASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~ 219 (585)
+....+|..+++.++|++.+..||+..|.+.+++.++..+
T Consensus 350 ~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~ 389 (396)
T TIGR00882 350 QFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTL 389 (396)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999887666554433
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-07 Score=97.50 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=71.7
Q ss_pred hccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhh
Q 007910 386 PLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAI 465 (585)
Q Consensus 386 ~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~ 465 (585)
.+.+|++-| +.+.+++++..+..+...+.+ ....+.+.-++.|...+-.+.
T Consensus 310 ~Ld~rfg~k-------~vl~~~lvi~~~~~~~~~~~~----------------------~~~~f~i~gll~g~s~G~~qA 360 (438)
T COG2270 310 FLDERFGSK-------PVLMIGLVILSIAALYLIFLE----------------------GELDFWILGLLVGTSLGGAQA 360 (438)
T ss_pred HHHHHhCCc-------eeehHHHHHHHHHHHHHHHcc----------------------ccHHHHHHHHHHHHhcchHHH
Confidence 344555544 677777777666555444433 111233334666777777788
Q ss_pred hhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 007910 466 GQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGS 511 (585)
Q Consensus 466 ~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~ 511 (585)
..=.|..+.+|++..++..|++++....++.+||.+.+.+.+.+++
T Consensus 361 ~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~ 406 (438)
T COG2270 361 SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS 406 (438)
T ss_pred HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 8888999999999999999999999999999999999999888863
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-11 Score=131.18 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=3.0
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLT 105 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~ 105 (585)
..++. ...++.......-+++.++++.+++|++.+.+-++..+..++..++++|. .|-|-+-.|.+++.+|.+++++.
T Consensus 11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhcc
Confidence 33343 66777777777888999999999999999999999999999999999995 88888889999999999988864
Q ss_pred hhcCCCCCCC------CCCC--cccC-----------------C-C-CCcchhHHHHHHHHHHHHhccccccchhhhhhc
Q 007910 106 AIIPAARPPK------CNPF--IEIC-----------------P-A-AKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGAD 158 (585)
Q Consensus 106 ~~~~~~~~~~------~~~~--~~~~-----------------~-~-~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 158 (585)
..+..-++.. ++.- .+.| . . ....-+..++++.++.|+|....++...+|+-|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 4322211000 0000 0012 0 0 111125788899999999999999999999999
Q ss_pred cCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc---------------------c-chhHHHHHHHHHHHH
Q 007910 159 QFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK---------------------A-GWVVGFGVPVGLMLF 216 (585)
Q Consensus 159 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~---------------------~-g~~~~f~~~~~~~~i 216 (585)
-.++ +.-+.+.++++....+|.++|.++++..... . .|+..|++.+.+.++
T Consensus 169 nv~~-------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l 241 (539)
T PF03137_consen 169 NVSK-------KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFL 241 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccc-------ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 9998 6678899999999999999999888765421 1 277777777766666
Q ss_pred HHHHHHHhCccccc
Q 007910 217 STVMFLLGSSLYIK 230 (585)
Q Consensus 217 ~~~~~~~~~~~~~~ 230 (585)
..+.++.++++.+.
T Consensus 242 ~aipl~~FPk~lp~ 255 (539)
T PF03137_consen 242 SAIPLFFFPKKLPG 255 (539)
T ss_dssp --------------
T ss_pred HHHHHHcCCccCCC
Confidence 65555555555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-08 Score=106.65 Aligned_cols=164 Identities=9% Similarity=0.022 Sum_probs=113.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLT 105 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~ 105 (585)
..++.....+....+++.|+.+.+|+++.+.+.+.....++..++.++.|+++||+ |+|+.+..+..+..++.++....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~~~~~~~ 285 (382)
T PRK10091 207 ATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLALLMLFFF 285 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHHHHHHHH
Confidence 33333444455556677888888999999999999999999999999999999996 99999998888888777655432
Q ss_pred hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007910 106 AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185 (585)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 185 (585)
. .+.+..++..++.++|.....+.......+..+++ +.++... .+...++
T Consensus 286 ~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~~~~~ 335 (382)
T PRK10091 286 G----------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGG------ELLGAAG--GQIAFNL 335 (382)
T ss_pred H----------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcc------hHHHHHH--HHHHHHH
Confidence 2 02334445555556655444443343333333321 3444433 3556789
Q ss_pred HHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHH
Q 007910 186 SYMASITLIVYIQDK-AGWVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 186 g~~~g~~~~~~l~~~-~g~~~~f~~~~~~~~i~~~~ 220 (585)
|..+||.++|++.+. .+|+..+.+.+...++....
T Consensus 336 g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (382)
T PRK10091 336 GSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS 371 (382)
T ss_pred HHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence 999999999999884 68999998876655544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=114.27 Aligned_cols=162 Identities=14% Similarity=0.102 Sum_probs=121.0
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
..+..++..++..++++......+.|++..++ ++.+.+++.....+...++.++.|+++||+ |||+++..+.++.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 300 (437)
T TIGR00792 223 QLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVLG 300 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 34445555666666666554444555544455 456667777788888999999999999996 9999999998888888
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
.+...+.. .+.+.+++..++.|++.+...+...++++|..+.++.+.+++.+++++++
T Consensus 301 ~~~~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 358 (437)
T TIGR00792 301 YLIFFFAG----------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSV 358 (437)
T ss_pred HHHHHHcc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHH
Confidence 77665532 14455667778889999998999999999988753322222567899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchh
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWV 204 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~ 204 (585)
+++...+|..+++.+.+++.+..||.
T Consensus 359 ~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 359 RTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999998877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=106.61 Aligned_cols=175 Identities=15% Similarity=0.013 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHH-HHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGA-ISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.+..+...++...+........+.|+.+ .|+++.+.+++...... ...++.+++|++.||+ |+||++.++.++..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 3444444555556666666777788865 79999999998887764 5667789999999996 9999998877665333
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
........+... ..+....+...++.+++.+...+...+...+..+++ +.+++.++.
T Consensus 288 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~~ 344 (390)
T TIGR02718 288 ALLWFAQAAFWL-----------------APGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDG------DQAGTDVTA 344 (390)
T ss_pred HHHHHHHHHccc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc------cchHHHHHH
Confidence 332222110000 002233344445556667777777777776766542 567899999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~ 219 (585)
.+...++|..+||.++|++.+..||+..|.+.+++.+++.+
T Consensus 345 ~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 345 VQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877666555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-08 Score=107.84 Aligned_cols=145 Identities=16% Similarity=-0.002 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
+...+..++....++.+..+++ ++.+++|.++.+.+.+.....++..++.+++|+++||+ |||+.+....+.......
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~ 330 (398)
T TIGR00895 253 VLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFAVL 330 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHH
Confidence 3344455555666666767676 66778899999999999999999999999999999996 998554443333332222
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
+..... +.+..++..++.|++.+...+...+++.|.+|+ ++|++++++++
T Consensus 331 ~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~ 380 (398)
T TIGR00895 331 VGSTLF-----------------------SPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT-------AIRATGVGWAI 380 (398)
T ss_pred HHHHhh-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-------HHHHHHHHHHH
Confidence 222111 445567777889999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 007910 181 ASVGLSYMASITLIVYI 197 (585)
Q Consensus 181 ~~~~ig~~~g~~~~~~l 197 (585)
....+|..+||.++|++
T Consensus 381 ~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 381 GIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHhHHhc
Confidence 99999999999998875
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=110.80 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchH-----HHHHHHHHHH
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFR-----VIALGTFTAL 96 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-----~l~~~~~~~~ 96 (585)
.+.+..++.....+....+++.|+.+++|++..+++.+...+.++..++.+++|+++||+ |||+ ..+.......
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~~l 334 (476)
T PLN00028 256 ILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQTL 334 (476)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHHHH
Confidence 333333334444456667788999888999999999999999999999999999999996 8762 2221111111
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
.+.....+.. ..+.+..++..++.+++.++..+...+++.+..| +.|++..
T Consensus 335 ~~i~~~~~~~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~ 385 (476)
T PLN00028 335 GGVFCIWLGR---------------------ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR--------RSLGVIS 385 (476)
T ss_pred HHHHHHHhcc---------------------cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh--------hhchhhh
Confidence 1111111111 0133344444555555554444444555555433 5678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
++.+.+.++|+.++|.+.+ ..+..+|+..|++.+++.+++.++.++.+
T Consensus 386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 8887777777777776543 22344699999888777777766665554
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.4e-09 Score=107.49 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+.+.+..++.....++...+++.|+.+.+|+++.+.+.+...+.++..++.++.|+++||..+||+..+. ........
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~-~~~~~~~~ 296 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLA-VFFMALII 296 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHH-HHHHHHHH
Confidence 34455555666666677778899999999999999999999999999999999999999985234443322 22111111
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
.........+ ..+....++..++.|+......+....+..|.+|+ +.|+++.+++
T Consensus 297 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~ 351 (379)
T TIGR00881 297 VSLLVYWLNP------------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPK-------KAAGTAAGFV 351 (379)
T ss_pred HHHHHHhcCc------------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCc-------chhHHHHHHH
Confidence 1111111000 01334455555666765555556667788999998 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHH
Q 007910 180 YASVGLSYMASITLIVYIQDKAGWVVGF 207 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~g~~~~f 207 (585)
+...++|..++|.+.|++.++.||+..|
T Consensus 352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 352 GFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999998754
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-08 Score=108.12 Aligned_cols=173 Identities=10% Similarity=0.020 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHH--hCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILE--YHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
..+...+..++..+.+.........|+... .+.+....+.+............++.|++.||+ ++|+.+..+.++..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence 334444455555555555555666666533 455566667777777777777778899999996 99999999988888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++.....+.. ++.+.+++..++.++|.+...|...+++.+..|+ +.|++++
T Consensus 286 ~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~-------~~~~~~~ 336 (395)
T PRK10054 286 IGLVGFIFSG----------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPP-------GMKASYF 336 (395)
T ss_pred HHHHHHHHcc----------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCc-------ccceehH
Confidence 8877665532 1455566778899999988888888999999998 6778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
+... ...+|..+||.++|++.|++|....|++.+....++..+.+
T Consensus 337 ~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 337 SAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 7644 56689999999999999999988888775555554444443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-08 Score=107.61 Aligned_cols=168 Identities=11% Similarity=0.059 Sum_probs=140.0
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHH
Q 007910 24 IANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLW 103 (585)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~ 103 (585)
+...++..+....+...++.+..+.+|.++...|++.+.+.+++.++.++.+++.+|+ ++++.+..+.++++++.+.++
T Consensus 224 l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~~~la 302 (524)
T PF05977_consen 224 LLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALALLLLA 302 (524)
T ss_pred HHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHHHHHh
Confidence 3333444444444556678888899999999999999999999999999999999995 999999999988888888877
Q ss_pred HhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHH
Q 007910 104 LTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASV 183 (585)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 183 (585)
++. +.+..++..++.|++.....+...+.+-+..|+ +.|++.+++++...
T Consensus 303 l~~-----------------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~-------~~~GRv~si~~~~~ 352 (524)
T PF05977_consen 303 LSP-----------------------SFWLALIALFLAGAAWIIANSSLNTLVQLSVPD-------WVRGRVFSIYQMVF 352 (524)
T ss_pred cch-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHhHHHHHHHHHH
Confidence 765 667778888889999888888888888888898 89999999999999
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 184 ~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
..+..+|..+.|.+.+.+|-+..+.++++..+++.++..
T Consensus 353 ~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 353 FGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877765555555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-08 Score=111.37 Aligned_cols=155 Identities=10% Similarity=0.035 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.....++..++..+.+++....++.|+++.+|.++.++++......++..++.+++|++.||+ |||+.+..+.++.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~~ 334 (485)
T TIGR00711 256 NFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAVG 334 (485)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHHH
Confidence 344455566667777888888899999999999999999999999999999999999999996 9999999998888888
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
..++.+.. .+ ..+.+.++...++.|+|.+...+.......+..|+ ++|+++.+.
T Consensus 335 ~~~~~~~~-~~------------------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~-------~~~g~~~~~ 388 (485)
T TIGR00711 335 FYWRAFTF-TP------------------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP-------HKIARGSSL 388 (485)
T ss_pred HHHHhccC-CC------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-------HHHhHHHHH
Confidence 77665321 01 11345566677889999988887777777788888 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc
Q 007910 179 YYASVGLSYMASITLIVYIQDK 200 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~ 200 (585)
++...++|..+|+.+.+.+.++
T Consensus 389 ~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 389 SNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-08 Score=102.97 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=104.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHH-HHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 40 NMIFYLILEYHMSGPEGANVLFLWG-AISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 40 ~~~~yl~~~l~~s~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
..+.|+.+++|+++.+.+++..... ++..++.+++|++.||+ |||+.+.++.++..+..+.+.+....+
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~--------- 300 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP--------- 300 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC---------
Confidence 3445677789999999998886654 45788999999999996 999998877776665544433221011
Q ss_pred CcccCCCCCcchhHHHHHHH----HHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 119 FIEICPAAKPRQLGFLFSSF----VLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 194 (585)
.+.+.++... +..|++.+...+....++.+.+|. +.+ +.+....++|...++.++
T Consensus 301 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~l~~~~~~~~~ 359 (402)
T PRK11902 301 ----------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSA-------TQY----ALLSALASVGRVYVGPTS 359 (402)
T ss_pred ----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH-------HHH----HHHHHHHHHHHHHHHHHH
Confidence 1333344433 345566666677777788877776 433 334444466776566689
Q ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 195 VYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 195 ~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
|++.+.+||+..|.+.+++.+++.++...
T Consensus 360 G~l~~~~G~~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 360 GYLVEAYGWPGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888777666555433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=109.75 Aligned_cols=166 Identities=16% Similarity=0.059 Sum_probs=107.1
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHhCCChhhHHH------------HHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 27 EAFEKVAGVGLHANMIFYLILEYHMSGPEGAN------------VLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 27 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~------------i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
.+...+.+|++..+.+.+++ +.|++..+.+. ...+..++..++.+++++++||+ |||++++++.++
T Consensus 297 ~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~~~ 374 (502)
T TIGR00887 297 WFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGFFI 374 (502)
T ss_pred HHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHHHH
Confidence 34445677888777777774 67887543221 12233345556778899999996 999999988888
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
..++..+..+...... +...+....+...++..+..+....+.+|.+|+ +.|++
T Consensus 375 ~~~~~~~l~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~-------~~R~~ 428 (502)
T TIGR00887 375 LTVLFFVLGFAYNHLS-------------------THGFLAIYVLAQFFANFGPNATTFIVPGEVFPT-------RYRST 428 (502)
T ss_pred HHHHHHHHHHHHHhcc-------------------hhHHHHHHHHHHHHHhcCCCchhhhhhhccCch-------hHHHH
Confidence 7777666654320000 111111111122222233445667778999999 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc----------cchhHHHHHHHHHHHHHHHH
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDK----------AGWVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~----------~g~~~~f~~~~~~~~i~~~~ 220 (585)
+.++.+....+|++++|.+.+++.+. .++...|++.++..+++.+.
T Consensus 429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~ 484 (502)
T TIGR00887 429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF 484 (502)
T ss_pred HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988773 34455666655555544333
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.9e-08 Score=103.83 Aligned_cols=152 Identities=13% Similarity=0.069 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.+...+..++....+++...+++.|+++ .|.+..+.+.+.+...++..++.++.|+++||+-+||+.+..+.++.+++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~ 277 (355)
T TIGR00896 199 AWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL 277 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 3444445555667778888889999864 799999999999999999999999999999995145666777777777777
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
+.+.+.. +.... ...++.|++.+...|...+.+.+..+++ +++++.+++.
T Consensus 278 ~~~~~~~-----------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~~~g~~~~~~ 327 (355)
T TIGR00896 278 CGLLFAP-----------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQA------AQAAALSAMA 327 (355)
T ss_pred HHHHHhh-----------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCH------HHHHHHHHHH
Confidence 6665533 11111 2346789999998888877777666542 5678888888
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc
Q 007910 180 YASVGLSYMASITLIVYIQDKAG 202 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~g 202 (585)
+...++|..++|.+.|++.++.|
T Consensus 328 ~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 328 QSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88889999999999999998765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.91 E-value=8.1e-07 Score=90.52 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=110.8
Q ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCC
Q 007910 45 LILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICP 124 (585)
Q Consensus 45 l~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (585)
+.+++|+++.|++.+.........+..++.|.++||+ ||||.-++..+++.+..+.- .+.
T Consensus 60 LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k-~~~------------------ 119 (354)
T PF05631_consen 60 LYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTK-HSS------------------ 119 (354)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH-hcc------------------
Confidence 4467899999999999999999999999999999997 99999888777777665432 222
Q ss_pred CCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH-HHHHHHHHHHHHHHHHhhcccch
Q 007910 125 AAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY-ASVGLSYMASITLIVYIQDKAGW 203 (585)
Q Consensus 125 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~ig~~~g~~~~~~l~~~~g~ 203 (585)
+++.++++|++-|++.....++-.+.+.....+.+ -.++..+.-++... +...+-++.+..++.++.+..+.
T Consensus 120 -----~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g--~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~ 192 (354)
T PF05631_consen 120 -----NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRG--FPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF 192 (354)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence 68899999999999999888777665544332211 11134455555433 33344455556666777776655
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhCc
Q 007910 204 --VVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 204 --~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
..+|..+.++.+++.++....++
T Consensus 193 g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 193 GPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCcchHHHHHHHHHHHHHHHHhccc
Confidence 78998888777777776655544
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.1e-08 Score=102.99 Aligned_cols=188 Identities=14% Similarity=0.071 Sum_probs=121.1
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+..|++.+..++..-+|.++..+++.|+++.+ +............+...+..+++|+++||+ |+||+++++.+..++
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 34566666666655566666668888887755 333333334556788889999999999996 999999999887777
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCC------------
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDN------------ 165 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------------ 165 (585)
......+.. |. ....+.+.+.++.+.+.++.|........++.+.||+++.
T Consensus 329 ~~~~~~l~l--p~---------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~ 391 (462)
T PRK15034 329 FSALLFLTL--PG---------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQ 391 (462)
T ss_pred HHHHHHHHh--cc---------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhH
Confidence 665443322 21 0112455555555555555555555566667777764100
Q ss_pred --CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHHhC
Q 007910 166 --PNNERILQTFFNWYYASVGLSYMASITLIVYIQDKA-GWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 166 --~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
.+.+++-+...++......+|+.+-|.+.+...+.. ++...|+...+..++..++.++..
T Consensus 392 ~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 392 AQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 011125567777888888888888887766666544 477888877777777666655543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-08 Score=109.22 Aligned_cols=152 Identities=14% Similarity=-0.016 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
....++..++....+++...+++.|+++.+|.++.+++.......++..++.+++|++.||+ |||+.+..+.++.+++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~~~ 339 (495)
T PRK14995 261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSALSF 339 (495)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHH
Confidence 34445566666667777778899999999999999999999999999999999999999996 99999998988888887
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
.++..... ..+.+..+...++.|+|.|...+.....+.+..|+ ++++.+.+++
T Consensus 340 ~~l~~~~~--------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~-------~~~g~~~~~~ 392 (495)
T PRK14995 340 YGLAMTDF--------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPP-------EKAAAAGAIE 392 (495)
T ss_pred HHHHHhcC--------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCH-------HhcchHHHHH
Confidence 66654320 01344456677889999999988888888888888 7889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q 007910 180 YASVGLSYMASITLIVYIQD 199 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~ 199 (585)
+...++|..+|+.+.+.+.+
T Consensus 393 ~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 393 TMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=118.57 Aligned_cols=161 Identities=12% Similarity=0.013 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChh-hHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGP-EGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~-~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
+..++..++..+..+.....++.|+.+.+|++.. +.+++.....++..++.++.|+++||+ ++++++.++.++.+++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~~~ 313 (1146)
T PRK08633 235 WLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLALSL 313 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHHHH
Confidence 3333344444445556677889999999999999 999999999999999999999999996 99999988888887777
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
+++.+.. +.+.+++..++.|++.++..+...+++.+.+|+ +.|++++++.
T Consensus 314 ~~~~~~~-----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~rg~~~~~~ 363 (1146)
T PRK08633 314 FLLPTAP-----------------------SLASVLVLFFLFGFSAGLFIVPLNALIQFRAPE-------KELGKVLAAN 363 (1146)
T ss_pred HHHHHhh-----------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCc-------cchhhhhHHH
Confidence 7766544 556677888889999999989999999999999 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHH
Q 007910 180 YASVGLSYMASITLIVYIQD-KAGWVVGFGVPVG 212 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~-~~g~~~~f~~~~~ 212 (585)
++..++|.++++.+++.+.. .+++...|++.+.
T Consensus 364 ~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~ 397 (1146)
T PRK08633 364 NFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIAL 397 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999888877766644 2345555554443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-08 Score=105.18 Aligned_cols=164 Identities=12% Similarity=0.000 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYL-ILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMIL 101 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl-~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~ 101 (585)
..+..++.....++...+++.|+ ++.+|+++.+++.....+.++..++.+++|++.||+ ||||++..+.++.+++..+
T Consensus 263 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~~~ 341 (438)
T PRK10133 263 AVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALCLI 341 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHH
Confidence 33444555566666667788886 557899999999999999999999999999999996 9999999887777666655
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
..+.. +. ..+....+.|++.+.++|...+...+.+|++ .+++.++..
T Consensus 342 ~~~~~-----------------------~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~--------~~~as~l~~- 388 (438)
T PRK10133 342 SAFAG-----------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD--------TKYGSSFIV- 388 (438)
T ss_pred HHHcC-----------------------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh--------hccchhHHh-
Confidence 54422 11 1245567899999999999999999998762 123333333
Q ss_pred HHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHH
Q 007910 182 SVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~ 220 (585)
...+|+.++|.+.|++.+..| -+..|++.++..+.....
T Consensus 389 ~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 389 MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 234677888889999999887 688887766655544443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-08 Score=105.78 Aligned_cols=164 Identities=16% Similarity=0.191 Sum_probs=134.3
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
|.....++..++..++........+.|.+..+|.+ ...+.+..+..+...++.++.++++||+ |+||++..+.++.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 44556667777777777777777777877778876 5567777888999999999999999996 999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+.++..+.. ..+.+.+++..++.|++.+...+...++++|..+.++.+.++++.+..++
T Consensus 303 ~~~~~~~~~---------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s 361 (428)
T PF13347_consen 303 GFLLLFFLG---------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFS 361 (428)
T ss_pred HHHHHHHHH---------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHH
Confidence 998887754 12678888999999999999999999999999986544333356789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchh
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWV 204 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~ 204 (585)
.+.....+|..+++.+.+.+.+..||.
T Consensus 362 ~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 362 VNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999999988887655543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.8e-08 Score=101.46 Aligned_cols=174 Identities=15% Similarity=0.142 Sum_probs=138.2
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+.+..-+...++.+=+.-.+.+....|-..++|++..+...+....++.+..+++++|++.||+ |-|++++.+.++..+
T Consensus 252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~ 330 (438)
T COG2270 252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI 330 (438)
T ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence 3444444555555555566777888999999999999999999999999999999999999996 999999999998887
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
..+...+.. ....+++.-.+.|+..|...+.+-++.++..|+ ++-+++|+
T Consensus 331 ~~~~~~~~~-----------------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~-------~k~~~fFg 380 (438)
T COG2270 331 AALYLIFLE-----------------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPK-------GKEGRFFG 380 (438)
T ss_pred HHHHHHHcc-----------------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCC-------ccccceee
Confidence 776665533 223355666788999999999999999999999 55577899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~ 222 (585)
+|....-.+..+||.+.+.+.+..| -|..+..-.++..++++++.
T Consensus 381 lyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~ 426 (438)
T COG2270 381 LYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLL 426 (438)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEE
Confidence 9999999999999999999988665 46666544444455544443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-07 Score=99.63 Aligned_cols=164 Identities=9% Similarity=-0.021 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH-
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG- 98 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g- 98 (585)
.+..++..++.....++...+++.++.+++|++..+.+.+...+.++..++.++.|++.||. +|+ .++.+..+..+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~-~l~~~~~~~~~~~ 295 (394)
T PRK10213 218 VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKL-ALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chh-HHHHHHHHHHHHH
Confidence 33333334444455555556664555567899999999999999999999999999999994 554 444444443333
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
..+..... +.+.+.+..++.|++.+...+..++++.+..|+ ++++..+.
T Consensus 296 ~~l~~~~~-----------------------~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 344 (394)
T PRK10213 296 LVLTLWGS-----------------------DKIVATGVAIIWGLTFALVPVGWSTWITRSLAD--------QAEKAGSI 344 (394)
T ss_pred HHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc--------cHHHHHHH
Confidence 33333322 455667778889999999999888888888874 23344556
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLF 216 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i 216 (585)
++...++|..+|+.++|++.+..|++..+..++...++
T Consensus 345 ~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 345 QVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 66677899999999999999989998888776654443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.3e-08 Score=94.10 Aligned_cols=163 Identities=18% Similarity=0.145 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH-HHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT-ALL 97 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~-~~~ 97 (585)
..|.+..++++..++.+=....-+.+.++.+|+|+.+++.+.+.....+.+..++.|.++||+ ||+-..+.+..+ ..+
T Consensus 265 pfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a~~~tl~ 343 (459)
T KOG4686|consen 265 PFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASACILTLL 343 (459)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHHHHHHHH
Confidence 345555555554454444445566888999999999999999999999999999999999997 998776655444 444
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+...+.++ .+.-+++..++|+...+......+.++...|. ++.+++++
T Consensus 344 ~H~~l~Ft-------------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE-------~qLGTayg 391 (459)
T KOG4686|consen 344 GHSGLFFT-------------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPE-------EQLGTAYG 391 (459)
T ss_pred HhhhHHhh-------------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCH-------HHhcchHH
Confidence 55555543 23356777888888877666677778888888 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc---hhHHHHHHHHHH
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAG---WVVGFGVPVGLM 214 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g---~~~~f~~~~~~~ 214 (585)
..+...|+|-.+-|++++.+.++-| |--.|.+....+
T Consensus 392 f~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~ 431 (459)
T KOG4686|consen 392 FIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM 431 (459)
T ss_pred HHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999998655 434554444333
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=99.23 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=111.3
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL 104 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~ 104 (585)
+...+....++......+.|+.+++|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++..++..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ 291 (385)
T TIGR00710 213 LIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVSAVLLEI 291 (385)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455566666778888889999999999999999999999999999999996 9999999888888777766655
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVG 184 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 184 (585)
....+ ......++...++.|++.+...+.......|..|+ +|++..++++....
T Consensus 292 ~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~ 345 (385)
T TIGR00710 292 TAILG------------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--------VAGTASALFGTLRL 345 (385)
T ss_pred HHHhc------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--------cchHHHHHHHHHHH
Confidence 33100 01334455666778898888888888888887753 46777887766654
Q ss_pred -HHHHHHHHHHHHhhcccchhHHHH
Q 007910 185 -LSYMASITLIVYIQDKAGWVVGFG 208 (585)
Q Consensus 185 -ig~~~g~~~~~~l~~~~g~~~~f~ 208 (585)
+|+..+|.+ +.+.++.+|...+.
T Consensus 346 ~~g~i~~~~~-~~~~~~~~~~~~~~ 369 (385)
T TIGR00710 346 VLGAIVGYLV-SLIHGNTAWPMSLS 369 (385)
T ss_pred HHHHHHHHHH-HhccccChHHHHHH
Confidence 455555554 45555545544443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.9e-08 Score=103.72 Aligned_cols=177 Identities=13% Similarity=0.010 Sum_probs=117.6
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHH--------H
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVI--------A 89 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l--------~ 89 (585)
+.++..++..+.....++.+..+++.|+.+.+|++..+.++......++..++.+++|+++||+ ++|+.. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~~ 339 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKIF 339 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHH
Confidence 3455666677788888888889999999999999999999999999999999999999999995 654321 1
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcch
Q 007910 90 LGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNE 169 (585)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 169 (585)
.+......+..++.... .. .+....++...+.+.+.++..+.......|..|
T Consensus 340 ~~~~~~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 391 (465)
T TIGR00894 340 NGIGGLGPGIFAYALPY-LS-------------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-------- 391 (465)
T ss_pred HHHHHHHHHHHHHHHHH-cC-------------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh--------
Confidence 11111111111111111 00 022333334444444444444444444444443
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHHH
Q 007910 170 RILQTFFNWYYASVGLSYMASITLIVYIQDKA---GWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 170 ~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~---g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+.++...++.+...++|+.++|.+.+++.+.. +|+..|.+.++..+++.++...
T Consensus 392 ~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 392 RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 56899999999999999999999999987643 4788888777666666554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-08 Score=106.73 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.....+++.++...+++......+.|+++.+|.++...++......+...++.++.++++||+ |+|+++.++.++..++
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i~ 307 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTCG 307 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 344445555666666666666666777777887776555544444566778899999999996 9999999999988888
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
.+++.+.. ..+.+.+++..++.|+|.+...+...++.+|..+.++.+.+++.++.+++.
T Consensus 308 ~~~~~~~~---------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~ 366 (448)
T PRK09848 308 YLLFFWVS---------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSL 366 (448)
T ss_pred HHHHHHcC---------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHH
Confidence 77666432 114566677778899999999999999999998864332333456888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccch
Q 007910 179 YYASVGLSYMASITLIVYIQDKAGW 203 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~~~g~ 203 (585)
+.+...+|..+|+.+.+.+.+..||
T Consensus 367 ~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 367 FSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999998887665555
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.7e-08 Score=102.54 Aligned_cols=151 Identities=13% Similarity=0.009 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007910 37 LHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKC 116 (585)
Q Consensus 37 ~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 116 (585)
....++.|+++..| ++.+.+++.+...++...+..+.+++.||..+.++.+..+.++..++..++...+
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~---------- 295 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS---------- 295 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh----------
Confidence 34567788776655 6778888877777666655555555555433777777788888887777666544
Q ss_pred CCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 117 NPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVY 196 (585)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 196 (585)
+.+.+++..++.++|.+...|...+++.+..|+ ++|++++++++...++|..+||.++|+
T Consensus 296 -------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~-------~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 296 -------------NLQQLFTLICLFYIGSIIAEPARETLSASLADA-------RARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCc-------ccchhhhhHHHHHHHHHHHhcccchHH
Confidence 455566667778888888889999999999998 889999999999999999999999999
Q ss_pred hhccc---c-hhHHHHHHHHHHHHHH
Q 007910 197 IQDKA---G-WVVGFGVPVGLMLFST 218 (585)
Q Consensus 197 l~~~~---g-~~~~f~~~~~~~~i~~ 218 (585)
+.++. + ....|.+..+..++..
T Consensus 356 l~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (400)
T PRK11646 356 LFDLGKALNQPELPWMMLGIIGLITL 381 (400)
T ss_pred HHHHHhhcCCcchHHHHHHHHHHHHH
Confidence 98864 2 2345444444444333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-08 Score=102.64 Aligned_cols=144 Identities=15% Similarity=0.015 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHH-HHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWG-AISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~-~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.+...+..++..++++.....++.|+.+ +|++..+.+.+.++.. +...++.+++|+++||+ |||+.+..+.++..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 288 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQALT 288 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHH
Confidence 4555556666778888888999999877 8999999998887665 56789999999999996 9999999888887776
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
..+..+..+..... ++ +..+.+.++...++.+++.+...+...+++.|.+|+ ++|++.+++
T Consensus 289 ~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~ 349 (356)
T TIGR00901 289 NAGFVWLASNGHHD---GI---------TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNP-------KFGATQMAL 349 (356)
T ss_pred HHHHHHHHhcCccc---cc---------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-------CccHHHHHH
Confidence 66554432100000 00 001456677778888999999999999999999999 899999998
Q ss_pred HHHHHH
Q 007910 179 YYASVG 184 (585)
Q Consensus 179 ~~~~~~ 184 (585)
++...|
T Consensus 350 ~~~~~~ 355 (356)
T TIGR00901 350 LSSLSA 355 (356)
T ss_pred HHHHHh
Confidence 877654
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.3e-08 Score=117.03 Aligned_cols=183 Identities=8% Similarity=-0.084 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.++..++..++..+.++++...++.|+.+.+|.+..+.+++.+.+.++..++.++.|+++|+. ++++.+..+.++..++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 304 (1140)
T PRK06814 226 RIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGLF 304 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHHH
Confidence 344444455555566667778899999999999999999999999999999999999999986 7777766666665555
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
.+.+.+.. ......+....+. .+. ....+.+.+++..++.|++.++..+...+++.+.+|+ +.|+++++.
T Consensus 305 ~~~l~~~~-~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~G~v~g~ 374 (1140)
T PRK06814 305 GLDLAFAS-SSVPAEPAQLKSI-LVF-LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANP-------AHRARVIAA 374 (1140)
T ss_pred HHHHHhcc-cccccccccccch-hhh-hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCc-------ccceeeeHH
Confidence 54444320 0000000000000 000 0001456677888889999999999999999999999 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHH
Q 007910 179 YYASVGLSYMASITLIVYIQD-KAGWVVGFGVPVG 212 (585)
Q Consensus 179 ~~~~~~ig~~~g~~~~~~l~~-~~g~~~~f~~~~~ 212 (585)
++....+|..+++.+.+.+.+ ..++...|++.+.
T Consensus 375 ~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~ 409 (1140)
T PRK06814 375 NNVLNAAFMVAGTIILALLQALGFSIPWIILFIAL 409 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999999888863 4466666655443
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.4e-07 Score=96.53 Aligned_cols=156 Identities=15% Similarity=0.005 Sum_probs=115.7
Q ss_pred HHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007910 32 VAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAA 111 (585)
Q Consensus 32 ~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~ 111 (585)
.........++.|+++.+|.++.+.+.+.....++..++.++.+++.||. ++|+++..+.. ..+......+..
T Consensus 219 ~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~----- 291 (393)
T PRK11195 219 GAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQH----- 291 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHh-----
Confidence 33444555666788888999999999999999999999999999999996 99998887753 333333333322
Q ss_pred CCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhh-hhHHHHHHHHHHHHHHHHH
Q 007910 112 RPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERI-LQTFFNWYYASVGLSYMAS 190 (585)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~ig~~~g 190 (585)
+.+..++..++.|++.+...+...+.+.+..|+ +. +++.++..+...++|..++
T Consensus 292 ------------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~-------~~~~g~~~a~~~~~~~~~~~~~ 346 (393)
T PRK11195 292 ------------------SLLPAYPLLILIGALGGFFVVPMNALLQHRGHV-------LVGAGHSIAVQNFNENLAMLLM 346 (393)
T ss_pred ------------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcc-------cccchhHHHHHhHHHHHHHHHH
Confidence 445566777789999998888888888775444 33 7899999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007910 191 ITLIVYIQDKAGWVVGFGVPVGLMLFSTVM 220 (585)
Q Consensus 191 ~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~ 220 (585)
..+.+.+ +..|-+..+.+.....++...+
T Consensus 347 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 347 LGLYSLL-VKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred HHHHHHH-HHcCCCHHHHHHHHHHHHHHHH
Confidence 9888865 4567777766655544444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-08 Score=105.62 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHH
Q 007910 60 LFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFV 139 (585)
Q Consensus 60 ~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (585)
.....+....+.+++++++||+ |||+.+.++.++..++.+++.+.. . ...+..++..+
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~---~------------------~~~~~~~~~~~ 418 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVP---V------------------DLYFLRTALAV 418 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcC---C------------------CchHHHHHHHH
Confidence 3445566778889999999996 999999999888887777666533 1 01233444445
Q ss_pred HHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007910 140 LMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 140 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~ 219 (585)
+.+++.++..+....+..|.+|+ +.|++++++.+....+|.+++|.+.+ +. ..++..++++.+...+++.+
T Consensus 419 ~~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~ 489 (505)
T TIGR00898 419 LGKFGITSAFQMVYLYTAELYPT-------VVRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGI 489 (505)
T ss_pred HHHHHHHHHHHHHHHHhcccccH-------HHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHH
Confidence 56666677778888999999999 89999999999999999999999988 43 34566677666655555555
Q ss_pred HHHH
Q 007910 220 MFLL 223 (585)
Q Consensus 220 ~~~~ 223 (585)
+.++
T Consensus 490 ~~~~ 493 (505)
T TIGR00898 490 LTLF 493 (505)
T ss_pred HHHc
Confidence 4444
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.8e-07 Score=95.33 Aligned_cols=166 Identities=10% Similarity=-0.101 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCch---HHHHH-HHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRF---RVIAL-GTF 93 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr---~~l~~-~~~ 93 (585)
+..+.+.+..++....+|++..+++.|+++ .|++.. .+.......+... +..++++||. .|| +.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 445666677888888999999999999964 678764 4444444444444 4458888885 553 33222 233
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+.++......+.. +....+....+.+++.....+...++.+|.+|+ +.|+
T Consensus 266 ~~a~~~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~rg 315 (368)
T TIGR00903 266 LIAAFFLALAFEL-----------------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDK-------ELHG 315 (368)
T ss_pred HHHHHHHHHHHcc-----------------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcch-------hhcC
Confidence 3333332333222 222334444556666777777788999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
++.++.+...++|+.++|.+.+.+.. |.+..|.+.++..+++.+..
T Consensus 316 t~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 316 KAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887763 66666766655555544443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.1e-07 Score=89.58 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
.|.+.+.--+.++.+|.++.+++.++.+ -|+|..++++..+..++......+..-.+++|.-.+|+..+...+.+.+|.
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~-~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~ 288 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILID-RGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL 288 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 3555556667799999999999999865 599999999999999999999999999999976678888888888899998
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
+.+.+.. . +.+.+. .+++|+|.|+..|....++.+-.++. ++-++..++.
T Consensus 289 ~G~~~~P---~-------------------~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a------~~Aa~LSgma 338 (395)
T COG2807 289 VGLLLAP---G-------------------QLPILW--ALLLGLGQGGAFPLALTLILLRSSDA------AIAAALSGMA 338 (395)
T ss_pred HHHHHhh---h-------------------hHHHHH--HHHHhCccchHHHHHHHHHHhhcCCh------HHHHHHHHHh
Confidence 8887644 1 223333 48999999999999999999888763 4556666676
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHH
Q 007910 180 YASVGLSYMASITLIVYIQDKA-GWVVGFGVPVGLML 215 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~ 215 (585)
+-.+.+=+..||.+.|++-|.. +|+..+..-+...+
T Consensus 339 Qg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i 375 (395)
T COG2807 339 QGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATL 375 (395)
T ss_pred hhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHH
Confidence 6666777788999999999865 47776654444333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.6e-07 Score=98.79 Aligned_cols=127 Identities=12% Similarity=0.153 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHH
Q 007910 55 EGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFL 134 (585)
Q Consensus 55 ~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (585)
..+.+.....+...++.++.++++||+ |+|+.+.++.++.+++.....+.. .++.+.+
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~ 322 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILSALIFFIP---------------------PSNVWLI 322 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhC---------------------cchHHHH
Confidence 334455556677778889999999996 999999988776665443333321 1255667
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Q 007910 135 FSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGW 203 (585)
Q Consensus 135 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~ 203 (585)
++..++.|++.+...+...++++|..+.++.+.+++..+..++.+.+...+|..+|+.+++++.+..||
T Consensus 323 ~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 323 FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 777888999999999999999999987543323334567888999999999999999999998877776
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-07 Score=99.04 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=116.8
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
|..+..++..++..+..+......+.|.+..++ +....+.+.....+...++.++.++++||+ |+|++++++.++.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 445555556666666666555554444333333 455566666666788889999999999996 999999988887776
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+.+...+....+ ..+.+.+++.-++.|++.+...+...++++|..+.++-+.+++..+..++
T Consensus 309 ~~~~~~~~~~~~------------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s 370 (473)
T PRK10429 309 SCGVLLLMGLAA------------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYS 370 (473)
T ss_pred HHHHHHHHhccC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHH
Confidence 665554321000 11455666777788999999999999999999775332222245677889
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccch
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGW 203 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~ 203 (585)
...+..-+|..+++.+.|++.+..||
T Consensus 371 ~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 371 VQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999998776665
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.5e-07 Score=93.66 Aligned_cols=69 Identities=16% Similarity=0.044 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 007910 37 LHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTA 106 (585)
Q Consensus 37 ~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~ 106 (585)
.....+.|+.+++|+++.+.+.+.....+...++.++.|++.||+ |||+.+.++..+..++.++..+..
T Consensus 222 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 222 FVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677788999999999999999999999999999999996 999999999988888887777644
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-07 Score=91.47 Aligned_cols=174 Identities=11% Similarity=-0.008 Sum_probs=117.6
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHH--hC-----------------CChhhHHHHHHHHHHHHHHHhhHhH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILE--YH-----------------MSGPEGANVLFLWGAISNFLPIIGA 75 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~-----------------~s~~~~~~i~~~~~~~~~~~~~~~G 75 (585)
+.+|..+.+..+.|.++++||++.-..+...+.. .| .+....--=..+.++...-+.++.|
T Consensus 323 ~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~ 402 (528)
T KOG0253|consen 323 KLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITG 402 (528)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHH
Confidence 3346667788899999999999876444332211 00 1111111112345677788899999
Q ss_pred HhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhh
Q 007910 76 SISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAF 155 (585)
Q Consensus 76 ~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 155 (585)
++-|| +|||+++..+++++.+..+++....+ +| .-..+++.+|+++.. .+.+.+.|
T Consensus 403 ~iver-lGRKkTMal~l~~f~iflfll~~c~~----------rn---------~~tvllf~arafisg----~fqvaYvY 458 (528)
T KOG0253|consen 403 VIVER-LGRKKTMALSLILFGIFLFLLTTCKT----------RN---------AYTVLLFTARAFISG----AFQVAYVY 458 (528)
T ss_pred HHHHH-hcchhHHHHHHHHHHHHHHHHHHhcC----------cc---------hhHHHHHHHHHHHhc----hheEEEEe
Confidence 99999 59999999999999988877765430 00 123566788887754 44567888
Q ss_pred hhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 156 GADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 156 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
-.|.+|+ ..|+++.+.......||+++.|+++ +....+-..+..+...+.+++.++.
T Consensus 459 tPEVyPT-------avRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIav 515 (528)
T KOG0253|consen 459 TPEVYPT-------AVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAV 515 (528)
T ss_pred cCcccch-------hhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHh
Confidence 9999999 9999999999999999999999888 3333333344444444444444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=95.94 Aligned_cols=141 Identities=16% Similarity=0.218 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMS-GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMIL 101 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s-~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~ 101 (585)
.+...++..+.++....+++.|+.+.+|++ ..+.+.+.+...+...++.++.|+++||+ |+|+..........++.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 289 (352)
T PF07690_consen 211 LLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGALG 289 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHHH
Confidence 334444445566677888889989999999 79999999999999999999999999996 9988888877777776666
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
+.+... ..+....+...++.|++.+...+...+++.|.+|+ ++|++..+..+.
T Consensus 290 ~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~~~g~~~~ 342 (352)
T PF07690_consen 290 LLLLPF--------------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPP-------EYRGTAFGLFNS 342 (352)
T ss_dssp HCCSHH--------------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHT-------CHHHHHHHHHHH
T ss_pred HHHHHH--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------HHHHHHHHHHHH
Confidence 654331 01456667778889999999999999999999999 899999999999
Q ss_pred HHHHHHHHHH
Q 007910 182 SVGLSYMASI 191 (585)
Q Consensus 182 ~~~ig~~~g~ 191 (585)
..++|..+||
T Consensus 343 ~~~~~~~igP 352 (352)
T PF07690_consen 343 IGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 9999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.5e-07 Score=99.78 Aligned_cols=174 Identities=16% Similarity=0.106 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchH--HHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFR--VIALGTFTALL 97 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~--~l~~~~~~~~~ 97 (585)
.+...+-..+..++++.-...++.|.. ..++++.+++.+.++..+...++.++.|+++|+. ..++ +..++.++..+
T Consensus 300 fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 300 FLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIAGL 377 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHHHH
Confidence 344555666667777777778888876 8899999999999999999999999999999996 7433 34444444444
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+...+++.. +++.++..-++.|+..|......+..+.|.... ++...+++
T Consensus 378 ~~~~~p~~~-----------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~-------~~l~~a~G 427 (509)
T KOG2504|consen 378 ARLFLPFAT-----------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGL-------EKLSNAYG 427 (509)
T ss_pred HHHHHHHhc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-------hhcchHHH
Confidence 444555544 677888888999999999988888899999999 77788899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhC
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
+......++.++||.++|++.|..+ |...|+.+.+..+++.++++..+
T Consensus 428 l~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 428 LLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999998877 99999998888887776665544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=89.39 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
.++..++.....+....+.+.++.+.+|+++.+.+.+.....++..++.+++|+++||+ |||+.+..+.++..+..+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~ 277 (377)
T PRK11102 199 YMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIMGIWL 277 (377)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555556667777888999999999999999999999999999999996 99999998887655433332
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
......+ .+.+...++..+.+.+.+...+.....+.|..| +.+++..+.+...
T Consensus 278 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~~~~~~~ 330 (377)
T PRK11102 278 VVSALLD-------------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP--------HMAGTASSLAGTL 330 (377)
T ss_pred HHHHHHh-------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc--------ccchHHHHHHHHH
Confidence 2211000 023334444444455555555555666666655 3456666654443
Q ss_pred -HHHHHHHHHHHHH
Q 007910 183 -VGLSYMASITLIV 195 (585)
Q Consensus 183 -~~ig~~~g~~~~~ 195 (585)
..+|..+++.+++
T Consensus 331 ~~~~g~~~g~~~~~ 344 (377)
T PRK11102 331 RFGIGAIVGALLSL 344 (377)
T ss_pred HHHHHHHHHHHHHh
Confidence 3466666665543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.1e-06 Score=89.12 Aligned_cols=147 Identities=12% Similarity=0.031 Sum_probs=103.8
Q ss_pred HHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007910 31 KVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPA 110 (585)
Q Consensus 31 ~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~ 110 (585)
...++......+.|++ +.|+++.+.++......++..++.++++++.||+ |+|+.+....+...++.+.+.+....+.
T Consensus 216 ~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (401)
T PRK11043 216 SAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLASLLSH 293 (401)
T ss_pred HHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444555566677764 5799999999888888888889999999999996 9999877666665555444333221010
Q ss_pred CCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHH
Q 007910 111 ARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMAS 190 (585)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g 190 (585)
.+....++...+.+++.+...+...+...|..| ++|+++.++++.....++..+
T Consensus 294 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~g~~~~~~~~~~~~~ 347 (401)
T PRK11043 294 ------------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP--------QATGKAAALQNTLQLGLCFLA 347 (401)
T ss_pred ------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--------ccChHHHHHHHHHHHHHHHHH
Confidence 133445556677888888888888877777765 346888998888878788888
Q ss_pred HHHHHHhhcccchhH
Q 007910 191 ITLIVYIQDKAGWVV 205 (585)
Q Consensus 191 ~~~~~~l~~~~g~~~ 205 (585)
+.+.+.+.+......
T Consensus 348 ~~~~g~l~~~~~~~~ 362 (401)
T PRK11043 348 SLLVSALISTPLLTT 362 (401)
T ss_pred HHHHHHccCCChhHH
Confidence 888888876443333
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.8e-06 Score=89.26 Aligned_cols=175 Identities=14% Similarity=0.044 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
++..++..++...+.-....+...|+++.-|.+....+.+.+...+.-...-.+.+++-.|+ |.|++++++.+..++=.
T Consensus 209 ~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 209 FLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 33444455555555555567788888665447777778777777888888889999999996 99999999999988887
Q ss_pred HHHHHh-hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH
Q 007910 100 ILLWLT-AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW 178 (585)
Q Consensus 100 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 178 (585)
.+.+.. ++.+. .....+.+..+.|+..|....+...++.+.+|+ +.|+++.++
T Consensus 288 ~l~a~~~~~~~~-------------------~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~-------~~~at~Q~l 341 (400)
T PF03825_consen 288 LLYAYFSDPWPF-------------------IVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP-------ELRATAQGL 341 (400)
T ss_pred HHHHHhcCCcHH-------------------HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-------cchHHHHHH
Confidence 777765 20000 112233445679999999999999999999999 889999998
Q ss_pred HHHH-HHHHHHHHHHHHHHhhcccchhH------HHHHHHHHHHHHHHHH
Q 007910 179 YYAS-VGLSYMASITLIVYIQDKAGWVV------GFGVPVGLMLFSTVMF 221 (585)
Q Consensus 179 ~~~~-~~ig~~~g~~~~~~l~~~~g~~~------~f~~~~~~~~i~~~~~ 221 (585)
+... ..+|..+|..++|++.+++|-+. .+.+++++.++..+++
T Consensus 342 ~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f 391 (400)
T PF03825_consen 342 YSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLF 391 (400)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7765 47999999999999999877543 3444444444443333
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00011 Score=78.41 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHH
Q 007910 58 NVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSS 137 (585)
Q Consensus 58 ~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (585)
....+-.....+..++++.+-|+. |.|..+.++...+..-.+...+. |-+.++.+
T Consensus 54 ~~~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~------------------------N~y~~yfs 108 (461)
T KOG3098|consen 54 YGQAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFP------------------------NSYYLYFS 108 (461)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhc------------------------chHHHHHH
Confidence 336777788889999999999995 99999999988887766555542 56788999
Q ss_pred HHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHH
Q 007910 138 FVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASIT 192 (585)
Q Consensus 138 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~ 192 (585)
-+++|+|.+..+.---.++++..+. +++.+-.++.-.....+..+|..
T Consensus 109 sallG~Gaallw~GqG~ylt~~st~-------~tie~Nisi~Wai~~~~li~Ggi 156 (461)
T KOG3098|consen 109 SALLGFGAALLWTGQGGYLTSNSTR-------ETIERNISIFWAIGQSSLIIGGI 156 (461)
T ss_pred HHHhhhhHHheecccceehhhcCCh-------hhHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999988899888887 56666666544445555555543
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.3e-06 Score=89.68 Aligned_cols=187 Identities=13% Similarity=0.066 Sum_probs=124.7
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
.++...+.+.+.+...+..--........+-++-|++..++.++.....+...+..+++.++-||+ |||+.++.+..+.
T Consensus 267 lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 267 LRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLM 345 (485)
T ss_pred hhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Confidence 334455555566665555433334444555667799999999999999999999999999999996 9999999999988
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHH-HHHHHHH--HHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 96 LLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGF-LFSSFVL--MSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 96 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l--~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
.+..+++.....+-... ..-.+. .++..++ ..++.| ..|...-+.+|++|+ +.|
T Consensus 346 ~~~~~~~~~~~~l~~~~---------------~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~-------~~R 402 (485)
T KOG0569|consen 346 AVALLLMSIALFLSNSF---------------GSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQ-------SAR 402 (485)
T ss_pred HHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCc-------cch
Confidence 88777766544111100 000111 1233333 333333 257788899999999 888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCcc
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSL 227 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (585)
.+++++.+....+...+-.+....+.+.+|= ..|.+.++..++..+..+...|+
T Consensus 403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcc
Confidence 9999888888777777766666777776664 45555555555555555544444
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.3e-06 Score=74.48 Aligned_cols=131 Identities=21% Similarity=0.342 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhH
Q 007910 370 ILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWL 449 (585)
Q Consensus 370 ~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (585)
.+..++..++. .++.||.++| +.+..+..+..++.+...... +.+.+
T Consensus 8 ~~~~~~~~~~~----g~~~d~~g~~-------~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 54 (141)
T TIGR00880 8 ALGQLIYSPLS----GLLTDRFGRK-------PVLLVGLFIFVLSTAMFALSS----------------------NITVL 54 (141)
T ss_pred hhHHHHHHhhH----HHHHhhcchh-------HHHHHHHHHHHHHHHHHHHhc----------------------cHHHH
Confidence 44455555553 3445666655 566667666666655544332 34445
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHH
Q 007910 450 VPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDY 529 (585)
Q Consensus 450 i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~ 529 (585)
....++.+++.....+....++.+..|++.|++.+++.+....++..+++.+.+.+.+.. +++.
T Consensus 55 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~ 118 (141)
T TIGR00880 55 IIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL----------------GWRA 118 (141)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc----------------chHH
Confidence 667788899999999999999999999999999999999999999999999888765321 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007910 530 YYWILCILSVVNFFYFIACS 549 (585)
Q Consensus 530 ~f~~~~~i~vv~~~~~~~~~ 549 (585)
.|++.+.+.++..+..+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~ 138 (141)
T TIGR00880 119 PFLFLAILALAAFILLAFLL 138 (141)
T ss_pred HHHHHHHHHHHHHHHHhhcC
Confidence 67777777766666555443
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.4e-08 Score=99.80 Aligned_cols=149 Identities=13% Similarity=0.192 Sum_probs=119.9
Q ss_pred CCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q 007910 362 PGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGV 441 (585)
Q Consensus 362 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (585)
.+.++..-.+.-+++.|+.+ .+.+|+.|+ +++.+|.++..++++..++..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~g----yLadryNR~-------~v~~vG~~iW~~Av~~~~fs~------------------- 119 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFG----YLADRYNRK-------RVIAVGIFIWTLAVFASGFSN------------------- 119 (493)
T ss_pred ccchhHHHHHHHHHHHHHHH----HHHhhcCcc-------eEEeeHHHHHHHHHHHHHHHH-------------------
Confidence 45566666777788888854 455665444 899999999999999888776
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccC
Q 007910 442 VALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTN 521 (585)
Q Consensus 442 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~ 521 (585)
+++.+.+.-.+.|+||+...|....++.+.+|.+.|++.+++++++..+|..+|......+.+.++
T Consensus 120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~----------- 185 (493)
T KOG1330|consen 120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF----------- 185 (493)
T ss_pred ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----------
Confidence 677788889999999999999999999999999999999999999999999988877666544332
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcccCcccCC
Q 007910 522 VNRAHYDYYYWILCILSVVNFFYFIACSWAYGSCEDI 558 (585)
Q Consensus 522 ~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~~~~ 558 (585)
++++.|++-++++++..+....+.++-+++..+
T Consensus 186 ----~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~ 218 (493)
T KOG1330|consen 186 ----WWRWAFRGSAVLGVIVGLLVFLFVREPERGARD 218 (493)
T ss_pred ----ceEEEEEeehHHHHHHHHHHHhhccCccccccc
Confidence 247889999999999988877777666554333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.2e-06 Score=86.48 Aligned_cols=126 Identities=19% Similarity=0.235 Sum_probs=95.2
Q ss_pred hhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHh
Q 007910 385 VPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNA 464 (585)
Q Consensus 385 ~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~ 464 (585)
.++++|+|.. +.+..|+....+=++..++.+ ++|..++.-++.++-.+.++
T Consensus 427 ~klI~kiGHv-------~v~~lgLa~~~~Rf~~~S~L~----------------------n~W~vLPieilqgit~aliW 477 (618)
T KOG3762|consen 427 FKLIEKIGHV-------NVMYLGLACNVGRFLYYSYLQ----------------------NPWMVLPIEILQGITHALIW 477 (618)
T ss_pred HHHHHHhccc-------ceeeehhhHHHHHHHHHHHhc----------------------CchheeeHHHHHHHHHHHHH
Confidence 3556665544 778888888888877777776 67777888899999999999
Q ss_pred hhhHHHhhhcCCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHH
Q 007910 465 IGQIEFYYSQFPKTMSSIGVALLS-LGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFF 543 (585)
Q Consensus 465 ~~~~~~~~~~~P~~~rg~~~g~~~-~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~ 543 (585)
.+...|+...+|++.|.+++|+.. ..-++|-.+|+.+.+.+....+ ...+|+.+++.+++.++
T Consensus 478 aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg----------------~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 478 AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG----------------ARTTFRIFGIACLVTLA 541 (618)
T ss_pred HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh----------------hHHHHHHHHHHHHHHHH
Confidence 999999999999999999999866 4556777777777776554333 25668877777777777
Q ss_pred HHHHHhcccCcc
Q 007910 544 YFIACSWAYGSC 555 (585)
Q Consensus 544 ~~~~~~~~~~~~ 555 (585)
++....+..+++
T Consensus 542 ~~~~iq~~l~~~ 553 (618)
T KOG3762|consen 542 LFISIQLLLKRR 553 (618)
T ss_pred HHHHhhhhhccc
Confidence 666655555444
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-06 Score=90.22 Aligned_cols=163 Identities=11% Similarity=-0.077 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHH-hCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILE-YHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGM 99 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~ 99 (585)
+..++..++......++.++++.|+.+. .+.+....+.....+.....++.+++|+++||+ ++||++.+..++.++..
T Consensus 235 ~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~~ 313 (410)
T TIGR00885 235 REGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMALC 313 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence 3334445554444456667788887653 245555556566677788899999999999996 99999988888777777
Q ss_pred HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 100 ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
++..+.. +.. .+...++.|+..+.++|+..+...+..++ +... ..+..
T Consensus 314 ll~~~~~-----------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~-------~~~~-~s~~l 361 (410)
T TIGR00885 314 LGSIFAG-----------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQ-------DTKY-GAAGL 361 (410)
T ss_pred HHHHHcC-----------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhhh-hHHHH
Confidence 6666543 222 35666778888888999999999999987 3222 22222
Q ss_pred HHHHHHHHHHHHHHHHHhhccc------chhHHHHHHHHHHHHH
Q 007910 180 YASVGLSYMASITLIVYIQDKA------GWVVGFGVPVGLMLFS 217 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l~~~~------g~~~~f~~~~~~~~i~ 217 (585)
.++ .+|+.+.|.+.|++.|.. +.+..|+++.++.+..
T Consensus 362 ~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
T TIGR00885 362 VMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI 404 (410)
T ss_pred HHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence 223 399999999999999953 4788888776655433
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.8e-06 Score=91.62 Aligned_cols=182 Identities=12% Similarity=0.036 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHhCCChhh----HHHHHHHHHHHHHHHhhHhH----HhhhcccCchHHH--HHHHH
Q 007910 24 IANEAFEKVAGVGLHANMIFYLILEYHMSGPE----GANVLFLWGAISNFLPIIGA----SISDSFLGRFRVI--ALGTF 93 (585)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~----~~~i~~~~~~~~~~~~~~~G----~laD~~~Grr~~l--~~~~~ 93 (585)
++...+....|....+.++.|..++.+.+... .+++.+.-.+.-.+..++-. ++.||..+.+... .+|.+
T Consensus 278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~ 357 (475)
T TIGR00924 278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGML 357 (475)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 33444444555556666788877664443211 44555555555555555433 5566521334433 67888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
+..+++..+.+...... .....+.+++++..++.++|.....|...+++++..|+ +.|+
T Consensus 358 l~~~~~~~~~~~~~~~~--------------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~-------~~~g 416 (475)
T TIGR00924 358 FCGASFLTFAASIWFAD--------------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ-------RLMG 416 (475)
T ss_pred HHHHHHHHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHH
Confidence 88888777765321100 00123788899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 174 TFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
++++.+..+..+|..+++.+.....+..+|...|....+..++..++++...+
T Consensus 417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 417 QMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887777667887777766666555555544444
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=89.48 Aligned_cols=138 Identities=17% Similarity=0.191 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
+...+..++.....+.+..+++.|+.+.+|+++.+++.+.....+...++.+++|+++||+ |||+.+..+......+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~ 306 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMGAF 306 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHHHH
Confidence 3344444454555667778889999999999999999999999999999999999999996 999988888777666665
Q ss_pred HHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHH
Q 007910 101 LLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180 (585)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 180 (585)
++.+... + ..+...+++...+.+++.|...+...+++.+.+| +++++..++.+
T Consensus 307 ~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--------~~~g~~~g~~~ 359 (366)
T TIGR00886 307 LVVLGLV-S------------------PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR--------RATGAVSGLVG 359 (366)
T ss_pred HHHhcCC-C------------------cchHHHHHHHHHHHHHHhccccchhhhcchhhch--------hhcccHHHHHH
Confidence 5554220 0 0033444455555566666666667777777775 45778888877
Q ss_pred HHHHHH
Q 007910 181 ASVGLS 186 (585)
Q Consensus 181 ~~~~ig 186 (585)
...++|
T Consensus 360 ~~~~~g 365 (366)
T TIGR00886 360 AIGNLG 365 (366)
T ss_pred HhccCC
Confidence 777665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.9e-06 Score=87.87 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
.++..++...++....+.+..|.+..+|.++.+..........+..++.++..++.+|+ |+|+++.++.++.+++.++.
T Consensus 241 ~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~~~~ 319 (467)
T COG2211 241 LLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGYLLL 319 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHHHHH
Confidence 33344444444443444455565656787888888888888888888899999999996 99999999999999999999
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
.+.. .++.+++++..++.++|.+...+...++++|...-++-..+.|.-|..++.+...
T Consensus 320 ~f~~---------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 320 YFTP---------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred Hhhc---------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 8854 2267888899999999999999999999999986543322223446677788888
Q ss_pred HHHHHHHHHHHHHHhhcccch
Q 007910 183 VGLSYMASITLIVYIQDKAGW 203 (585)
Q Consensus 183 ~~ig~~~g~~~~~~l~~~~g~ 203 (585)
.=+|..++..+.+++...+||
T Consensus 379 ~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 379 RKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 888888888888887766655
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-05 Score=77.73 Aligned_cols=129 Identities=18% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
+.....+++.+|+|++|.+.+.....++..++ ++.|.+.|++ |.+.++.+|.+...+|+..+.+.-+-.
T Consensus 22 s~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~--------- 90 (250)
T PF06813_consen 22 SAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGR--------- 90 (250)
T ss_pred hhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCc---------
Confidence 33456678899999999999999999999874 8889999996 999999999999999999888754110
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHH
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITL 193 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~ 193 (585)
......+.+.+...+.+.+.+.+.+.......+.||. .||++.++.-....+++.+=..+
T Consensus 91 -------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~--------~RG~vvgilk~~~GLSaai~t~i 150 (250)
T PF06813_consen 91 -------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR--------SRGTVVGILKGFFGLSAAIFTQI 150 (250)
T ss_pred -------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc--------ccCceehhhhHHHHhHHHHHHHH
Confidence 1112456666666666666666656665556688875 46788887666666666553333
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-05 Score=82.33 Aligned_cols=137 Identities=13% Similarity=0.070 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
...+.|+.+.+|.+..+.+++.....++..++.++.+++.||+ |++.. .+.....++.+...... ...
T Consensus 228 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~--~~~~~~~~~~~~~~~~~-~~~-------- 295 (394)
T PRK11652 228 ACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMW--QSVICCLLAGLLMWIPG-WFG-------- 295 (394)
T ss_pred HhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHH-Hhc--------
Confidence 4456677777999999999888888888888888999999996 73332 23333333322222111 000
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
..+.+.++...++.++|.+...|...++..|.+|. ++++..++.+...++|..+++.+++++.
T Consensus 296 ---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------~~g~~~~~~~~~~~lg~~~~~~~~~~~~ 358 (394)
T PRK11652 296 ---------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY--------LAGTAGALLGGLQNIGSGLAALLSAMLP 358 (394)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--------cchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 01345567777889999999999999998888863 3577788888888999999999998887
Q ss_pred cccchh
Q 007910 199 DKAGWV 204 (585)
Q Consensus 199 ~~~g~~ 204 (585)
+...+.
T Consensus 359 ~~~~~~ 364 (394)
T PRK11652 359 QTGQFS 364 (394)
T ss_pred CCchHH
Confidence 654443
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=83.34 Aligned_cols=177 Identities=9% Similarity=0.053 Sum_probs=133.8
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhC---CChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYH---MSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
|..|...+........|+..-...+.|....++ .+....|.+.+...+.-.+...+..++-+|+ |.|+.++++.++
T Consensus 220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~i 298 (412)
T PF01306_consen 220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGVI 298 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHHH
Confidence 344444443333344555555567778776543 3445667777888888888999999999996 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
.++=..++++++ +.+.+.+.+.+.++-.+.......-|+++.+|+ +..++
T Consensus 299 ~~iRi~~~~~~~-----------------------~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~-------rlsAt 348 (412)
T PF01306_consen 299 MAIRIIGSGFAT-----------------------NPWVISLIKLLHALEFPLLLVAAFKYITAHFDK-------RLSAT 348 (412)
T ss_dssp HHHHHHHHHT-------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-G-------GGHHH
T ss_pred HHHHHHHHhhhc-----------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-------hHHHH
Confidence 999888888876 788899999999999999999999999999999 77788
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 175 FFNW-YYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 175 ~~~~-~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
.+.+ ++.+..+|..+.+.++|++-|+.|++..|++-+.+.+...++..+..
T Consensus 349 ~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l 400 (412)
T PF01306_consen 349 LYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTL 400 (412)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeee
Confidence 8876 46777999999999999999999999888776655554444444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.1e-05 Score=79.47 Aligned_cols=171 Identities=18% Similarity=0.120 Sum_probs=136.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHh
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLT 105 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~ 105 (585)
..++..++++.--..+-+|--+.||++..|+..+...+..+..++....|++..|-.+++++..+++.+.+++..+..++
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444455554445566676778999999999999999999999999999998855699999999999999988887776
Q ss_pred hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHH
Q 007910 106 AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGL 185 (585)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 185 (585)
.. ..+.+.+..+.+++|+|.|.+.....+.+-|...+ .+-+.+++.+.....+
T Consensus 296 ~~--------------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~-------~~aG~~mG~WGaaQA~ 348 (403)
T PF03209_consen 296 GP--------------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSA-------GRAGLFMGAWGAAQAI 348 (403)
T ss_pred Hh--------------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCC-------cchhHHHHHHHHHHHH
Confidence 51 12567899999999999999999999999999988 5668999999999999
Q ss_pred HHHHHHHHHHHhhcc----------cchhHHHHHHHHHHHHHHHHHHH
Q 007910 186 SYMASITLIVYIQDK----------AGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 186 g~~~g~~~~~~l~~~----------~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+..+|..+++.+.|- .+|-.+|.+.++++++++.+...
T Consensus 349 A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 349 ARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888876542 24777787777777766665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4e-05 Score=74.31 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=91.3
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccc
Q 007910 43 FYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEI 122 (585)
Q Consensus 43 ~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 122 (585)
.|+..++++...+++.+........+.+..+.|-++||- ||||.- +.+++.++++.+..-
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKrac----vtycitYiLsCiTKh--------------- 120 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRAC----VTYCITYILSCITKH--------------- 120 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccce----eeehHHHHHHHHhhc---------------
Confidence 456677899999999887777777888888999999995 999964 556666777766431
Q ss_pred CCCCCcchhHHHHHHHHHHHHhccccccchhhh-hhccCCCCCCCcchhhhhHHHH-HHHHHHHHHHHHHHHHHHHhhcc
Q 007910 123 CPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAF-GADQFHNPDNPNNERILQTFFN-WYYASVGLSYMASITLIVYIQDK 200 (585)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~ig~~~g~~~~~~l~~~ 200 (585)
..++-.++++|++-|+..+....+..+. +.|--..++ -++ .-...-|+ ....+..+-++++.+.+..+.+.
T Consensus 121 -----SpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~-Feq-qWls~TFskA~ffgNglvAiiaGlfgn~lvd~ 193 (454)
T KOG4332|consen 121 -----SPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG-FEQ-QWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDT 193 (454)
T ss_pred -----CCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC-ChH-hhhhHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 1255678999999998887766555443 222221100 000 11111122 12223334444455555566665
Q ss_pred cc--hhHHHHHHHHHHHHHHHHHH
Q 007910 201 AG--WVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 201 ~g--~~~~f~~~~~~~~i~~~~~~ 222 (585)
++ -..+|-..+.+..++..+.+
T Consensus 194 ~slGPVAPFdAAacfLaigmAvil 217 (454)
T KOG4332|consen 194 FSLGPVAPFDAAACFLAIGMAVIL 217 (454)
T ss_pred hccCCCCchHHHHHHHHHHHHHHH
Confidence 44 45676555555555555443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-05 Score=85.16 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=93.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 007910 27 EAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTA 106 (585)
Q Consensus 27 ~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~ 106 (585)
.++..++..........|.+..+|. +...+.+...+.+...++.+++++++||+ |+|+++..+.++..+..++..+..
T Consensus 237 ~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~ 314 (460)
T PRK11462 237 TIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVP 314 (460)
T ss_pred HHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333333333333333443 33445667777888888999999999996 999998766554444333333221
Q ss_pred hcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHH
Q 007910 107 IIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLS 186 (585)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig 186 (585)
. .+...+++..++.|++.++..+...++++|....++-+.+++.-+..++.+.+...+|
T Consensus 315 ---~------------------~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg 373 (460)
T PRK11462 315 ---M------------------QASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLG 373 (460)
T ss_pred ---h------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHH
Confidence 0 1222334445567777777777777888888764322222233456667777888999
Q ss_pred HHHHHHHHHHhhcccch
Q 007910 187 YMASITLIVYIQDKAGW 203 (585)
Q Consensus 187 ~~~g~~~~~~l~~~~g~ 203 (585)
..+|+.+++++.+..||
T Consensus 374 ~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 374 LAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999888887665454
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-05 Score=85.61 Aligned_cols=176 Identities=14% Similarity=0.039 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCc-------hHHHHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGR-------FRVIALGT 92 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr-------r~~l~~~~ 92 (585)
+|.+.+..+.+..+++.+..++|.|+.+.+|++-.+.|+..++-.+...+..+++|.++||. -+ +|-+.-..
T Consensus 260 vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l-~~~~ls~t~~rkifn~i 338 (466)
T KOG2532|consen 260 VWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRL-TFRILSETTVRKIFNTI 338 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCchHhHHHHHHhH
Confidence 36777899999999999999999999999999999999999999999999999999999996 44 22222222
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCc-chhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhh
Q 007910 93 FTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKP-RQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERI 171 (585)
Q Consensus 93 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (585)
.....+..+..+.- ++. .+. .....+.++..+.|+..++...+. .|..| +.
T Consensus 339 ~~~~~ai~l~~l~~-~~~---------------~~~~~a~~~l~~~~~~~g~~~~Gf~~~~----~~~ap--------q~ 390 (466)
T KOG2532|consen 339 AFGGPAVFLLVLAF-TSD---------------EHRLLAVILLTIAIGLSGFNISGFYKNH----QDIAP--------QH 390 (466)
T ss_pred HHHHHHHHHHeeee-cCC---------------CcchHHHHHHHHHHHHcccchhhhHhhh----hhccc--------hH
Confidence 22222222222211 110 000 011122222223333333322221 11122 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhHHHHHHHHHHHHHHHHHHHh
Q 007910 172 LQTFFNWYYASVGLSYMASITLIVYIQDK---AGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 172 r~~~~~~~~~~~~ig~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
-+..+++.+...++...++|.+.+.+..+ -.|+.+|++.+++.+++.+.+.+.
T Consensus 391 a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 391 AGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 57888999999999999999999999842 369999999888887776555443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-05 Score=83.50 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=94.4
Q ss_pred hhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHH
Q 007910 384 VVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFN 463 (585)
Q Consensus 384 ~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~ 463 (585)
..++.||+||| +.+..+..+.+++.+.+.... +...++...++.|+++++.
T Consensus 71 ~G~l~dr~Grr-------~~l~~~~~~~~~~~~~~~~a~----------------------~~~~l~~~r~l~Gi~~~~~ 121 (413)
T PRK15403 71 LGPLSDRIGRR-------PVLITGALIFTLACAATLFTT----------------------SMTQFLIARFIQGTSICFI 121 (413)
T ss_pred hhHHHHHcCch-------HHHHHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHHHH
Confidence 56778898887 677778777777766665433 5556777888999999877
Q ss_pred hhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHH
Q 007910 464 AIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFF 543 (585)
Q Consensus 464 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~ 543 (585)
.+....++.+..|++.+++.+++.+....++..+|+.+.+.+.... +++..|++.+++.++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~----------------gw~~~f~~~~~~~~i~~~ 185 (413)
T PRK15403 122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV----------------HWKVLFAIIAVMGLIAFV 185 (413)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CHHHHHHHHHHHHHHHHH
Confidence 7777777778899999999999999999999999998877654321 247788888888777766
Q ss_pred HHHHHhcccC
Q 007910 544 YFIACSWAYG 553 (585)
Q Consensus 544 ~~~~~~~~~~ 553 (585)
..+...++.+
T Consensus 186 ~~~~~lp~~~ 195 (413)
T PRK15403 186 GLLLAMPETV 195 (413)
T ss_pred HHHHhCCCCc
Confidence 5455455543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.9e-06 Score=86.75 Aligned_cols=145 Identities=15% Similarity=0.129 Sum_probs=118.9
Q ss_pred CCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q 007910 362 PGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGV 441 (585)
Q Consensus 362 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (585)
.+++.....+..++..|+ ..++.+|+|+| ..+.+|++++..+..++++.+
T Consensus 108 iG~LFaskA~~qllvnp~----~G~l~~~iGy~-------ipm~~Gl~vmf~sTilFafg~------------------- 157 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPF----FGNLIDRIGYK-------IPMVAGLFVMFLSTILFAFGN------------------- 157 (464)
T ss_pred hhHHHHHHHHHHHHhccc----chhhHHHhccc-------cHHHHHHHHHHHHHHHHHHcc-------------------
Confidence 455556667777777777 45677788877 789999999999999998877
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccc
Q 007910 442 VALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTM-SSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVST 520 (585)
Q Consensus 442 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~ 520 (585)
+...++++-.++|+|..+..++..+.+.+.+|++. ||+++|+.....++|-.+|+.+.+.+.+..|
T Consensus 158 ---sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G---------- 224 (464)
T KOG3764|consen 158 ---SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG---------- 224 (464)
T ss_pred ---hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC----------
Confidence 56678899999999999999999999999999887 5999999999999999999999988776554
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 521 NVNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 521 ~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
++.-|++++++.++....-.+..+-++.+
T Consensus 225 ------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 225 ------KSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred ------CcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 24459999999888887766666544433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.5e-05 Score=75.29 Aligned_cols=141 Identities=20% Similarity=0.227 Sum_probs=107.7
Q ss_pred HHHhCCCh--hhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccC
Q 007910 46 ILEYHMSG--PEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEIC 123 (585)
Q Consensus 46 ~~~l~~s~--~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (585)
..+++.+. ...+++...+.+...++.++.|.++||+ |||+.+..+.....++.++..+..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~---------------- 91 (338)
T COG0477 29 LSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN---------------- 91 (338)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc----------------
Confidence 34455554 4788999999999999999999999997 9998888888776666555555441
Q ss_pred CCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhcc--
Q 007910 124 PAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA-SVGLSYMASITLIVYIQDK-- 200 (585)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~ig~~~g~~~~~~l~~~-- 200 (585)
.+.+.+++.|.+.|++.+...+...+++.|.+|. . ++|+...+.... ...+|..++|.+++.+...
T Consensus 92 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (338)
T COG0477 92 -----VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE--A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALL 160 (338)
T ss_pred -----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc--h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1477889999999999999999999999999886 1 456777777777 5778888888777666543
Q ss_pred cchhHHHHHHHHHH
Q 007910 201 AGWVVGFGVPVGLM 214 (585)
Q Consensus 201 ~g~~~~f~~~~~~~ 214 (585)
.+|+..|.......
T Consensus 161 ~~~~~~~~~~~~~~ 174 (338)
T COG0477 161 WGWRAAFLLAALLG 174 (338)
T ss_pred cchHHHHHHHHHHH
Confidence 57888665544433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.0014 Score=68.79 Aligned_cols=155 Identities=9% Similarity=0.042 Sum_probs=106.1
Q ss_pred HHHHHHHHHH-hCCChhhHH-HHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007910 39 ANMIFYLILE-YHMSGPEGA-NVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKC 116 (585)
Q Consensus 39 ~~~~~yl~~~-l~~s~~~~~-~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 116 (585)
+++..|+.+. .|+++.|.. -+.-+..=...+..++...++|.. |.|.+++++.+...+...++.+..
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~---------- 92 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGT---------- 92 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHC----------
Confidence 5788999887 899988875 555566666777888999999994 999999999988888888877765
Q ss_pred CCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 117 NPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVY 196 (585)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 196 (585)
+...+-++-+.-|++.+. ..+..+++=...++ ++=.++.+....+.-+|-.++..++..
T Consensus 93 -------------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~-------~~yq~vts~~raa~l~g~~~s~~lgQl 151 (412)
T PF01770_consen 93 -------------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDK-------EHYQKVTSYTRAATLVGRFISSLLGQL 151 (412)
T ss_pred -------------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566667777666654 34444555444444 333444555555666666666666655
Q ss_pred hhc--ccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 197 IQD--KAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 197 l~~--~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
+.. ..++....++......++++..++.+
T Consensus 152 lvs~~~~sy~~L~~isl~~~~~a~~~~~fLP 182 (412)
T PF01770_consen 152 LVSFGGVSYFQLNYISLASVSLALLIALFLP 182 (412)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 544 34567777777776666666655544
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-05 Score=84.14 Aligned_cols=175 Identities=17% Similarity=0.044 Sum_probs=112.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHH--hCCChh------hHHHHHHHHHHHHHHHhhHh----HHhhhcccCchHHHHHHHHH
Q 007910 27 EAFEKVAGVGLHANMIFYLILE--YHMSGP------EGANVLFLWGAISNFLPIIG----ASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 27 ~~~~~~~~~~~~~~~~~yl~~~--l~~s~~------~~~~i~~~~~~~~~~~~~~~----G~laD~~~Grr~~l~~~~~~ 94 (585)
.++....+|.+...++.++..+ -+.+.. ..+++.+.-.+...++.++. +++.||+ +..+.+.+|.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 3344555666666666555431 111111 13344444444444444444 6777774 777889999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
..++++.+.+..+... + ....+.++++...+++|+|+++..|...+++.+..|+ +.|++
T Consensus 360 ~~l~f~~l~~~~~~~~----~----------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~-------~~rg~ 418 (500)
T PRK09584 360 CSGAFLVLPLGAKFAN----D----------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ-------RLMGF 418 (500)
T ss_pred HHHHHHHHHHHHHhcC----C----------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH-------HHHHH
Confidence 9999988877652211 0 0112466888999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc----------ccchhHHHHHHHHHHHHHHHHHHH
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQD----------KAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~----------~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+++.++....+|..++..+.+.... ..++...|...++..++..++++.
T Consensus 419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~ 477 (500)
T PRK09584 419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888777666643221 113566666555444433333333
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=85.25 Aligned_cols=170 Identities=11% Similarity=-0.001 Sum_probs=129.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 007910 25 ANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL 104 (585)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~ 104 (585)
+..++..++...+.+++--++ ++++-.+.--|.....-..+-....++.+++-.|+ |+-+++.++++.+.+=++.+..
T Consensus 378 ~~av~mG~g~~lv~tFLfWHl-ed~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~S~ 455 (618)
T KOG3762|consen 378 FVAVVMGAGVGLVFTFLFWHL-EDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYYSY 455 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHHHH
Confidence 344444444444445443333 45554455455444445555667778899999996 9999999999988887777776
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHH-
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASV- 183 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~- 183 (585)
.. |.|+.+..-+++|+-.+.++.++-+|+++..|+ +.|+++.++.+...
T Consensus 456 L~-----------------------n~W~vLPieilqgit~aliWaa~~sY~s~vaPp-------~l~at~Q~l~~g~f~ 505 (618)
T KOG3762|consen 456 LQ-----------------------NPWMVLPIEILQGITHALIWAAIISYASHVAPP-------GLRATAQGLLQGIFH 505 (618)
T ss_pred hc-----------------------CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCC-------cchHHHHHHHHHHhc
Confidence 55 788999999999999999999999999999999 88899998766555
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 184 ~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
.+|-.+|.+++|.+...+|-+..|.+.++..++.++......+
T Consensus 506 GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 506 GLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred ccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888999999999999999899998887776666665555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.6e-05 Score=86.65 Aligned_cols=136 Identities=10% Similarity=-0.136 Sum_probs=108.4
Q ss_pred HHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCC
Q 007910 46 ILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPA 125 (585)
Q Consensus 46 ~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (585)
.+.+|+++.+.|.+.....++..++....+++.+|+ +.|+++.++.++.+++........+-..+..
T Consensus 280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~------------ 346 (468)
T TIGR00788 280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAF------------ 346 (468)
T ss_pred cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeecccccc------------
Confidence 356899999999999999999999999999999996 9999999999988887765432211110000
Q ss_pred CCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007910 126 AKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAG 202 (585)
Q Consensus 126 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g 202 (585)
...+.+.++..-++.+++.+........++.+..|+ +.+++.++++....++|..+++.+++++.++.|
T Consensus 347 -gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~-------~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 347 -GISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPS-------GCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred -CCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCC-------CceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 000223445556788888888888889999999999 788999999999999999999999999998877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00019 Score=78.65 Aligned_cols=144 Identities=15% Similarity=0.152 Sum_probs=99.5
Q ss_pred HHhHhHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHH-------HHHHHHHHHHHHH
Q 007910 32 VAGVGLHANMIFYLILEYHMSG----PEGANVLFLWGAISNFLPIIGASISDSFLGRFRV-------IALGTFTALLGMI 100 (585)
Q Consensus 32 ~~~~~~~~~~~~yl~~~l~~s~----~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~-------l~~~~~~~~~g~~ 100 (585)
..+......++.|.++..+.+. ....++.+...+...+..++.|++.||+ |+|+. +.+|.++..++++
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~~~~~~ 361 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLCSLGFL 361 (489)
T ss_pred HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 3344444667777765332211 0123344444455667788889999996 99873 7778777777765
Q ss_pred HHHHhhh-cCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH
Q 007910 101 LLWLTAI-IPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY 179 (585)
Q Consensus 101 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 179 (585)
.++.... ... .....+.++++...+++|+|.++..|...+++.+..|+ +.++..++++
T Consensus 362 ~~~~~~~~~~~--------------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~-------~~~g~~~g~~ 420 (489)
T PRK10207 362 TAAAAGMWFAD--------------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQ-------HLMGFILGMW 420 (489)
T ss_pred HHHHHHHhhcC--------------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChH-------HHHHHHHHHH
Confidence 4432110 000 00012567778888999999999999999999999999 8899999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 007910 180 YASVGLSYMASITLIVYI 197 (585)
Q Consensus 180 ~~~~~ig~~~g~~~~~~l 197 (585)
+...++|..+|..++.+.
T Consensus 421 ~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 421 FLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999988777655
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0051 Score=64.67 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 445 TAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILN 506 (585)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~ 506 (585)
+.+..++..+..|+-.+..+......+.+..|++.|..++|...+..++|..++..+.-.++
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44445556777788888999999999999999999999999999999999988887755443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=82.72 Aligned_cols=136 Identities=15% Similarity=0.063 Sum_probs=92.6
Q ss_pred CCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 007910 362 PGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAI----------- 430 (585)
Q Consensus 362 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~----------- 430 (585)
.+++...+.+...+..++ ...+.+|.+|+ +.+.+|+++++++.++++..+.....+.+
T Consensus 70 ~G~i~s~~~i~~~~~~i~----v~~~~~r~~r~-------~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIF----VSYFGTKLHRP-------IVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHH----HHHhhcccCcc-------eEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 344555555555555554 34556676665 78889999999998887765411000000
Q ss_pred --hhCCCCCC-------C-------ccc--cchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHH
Q 007910 431 --REGLADNP-------E-------GVV--ALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMA 492 (585)
Q Consensus 431 --~~~~~~~~-------~-------~~~--~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ 492 (585)
+...+++. + ... ...+..+++.-++.|+|++...+....++.+.+|++.|++++|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 00011100 0 000 11345567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 007910 493 VGNLVGSLIVTILNRV 508 (585)
Q Consensus 493 ig~~ig~~l~~~i~~~ 508 (585)
+|..+|+.+.+.+...
T Consensus 219 iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQI 234 (633)
T ss_pred hhhHHHHHHHHHHHhc
Confidence 9999999998887644
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00037 Score=77.26 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=92.1
Q ss_pred hhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHH
Q 007910 384 VVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFN 463 (585)
Q Consensus 384 ~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~ 463 (585)
..++.+|+|+| +.+.+|.++.+++.++++..... ....+.+.+.+..++.|+|+++.
T Consensus 81 ~G~L~Dr~G~R-------~vllig~ll~~iG~ll~ala~~~----------------~i~~s~~~l~l~r~l~G~G~~~~ 137 (591)
T PTZ00207 81 YSFIYDYLGPR-------PIFVLSMTVFCLGTLLFALTFQE----------------VIEGSVVRLSVYNGLMTLGCMLF 137 (591)
T ss_pred HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHhcc----------------cccCcHHHHHHHHHHHHHHHHHH
Confidence 45667787766 88999999999998887765300 00125666777888999999999
Q ss_pred hhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHH
Q 007910 464 AIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFF 543 (585)
Q Consensus 464 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~ 543 (585)
.+.....+.+.+| +.||+++|+.....++|+.+.+.+...+.. .++..+|++++++.++..+
T Consensus 138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~vv~l 199 (591)
T PTZ00207 138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFALVVGI 199 (591)
T ss_pred HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHHHHHH
Confidence 9988888888887 679999999999999999765444333221 1235667778877777776
Q ss_pred HHHHHhccc
Q 007910 544 YFIACSWAY 552 (585)
Q Consensus 544 ~~~~~~~~~ 552 (585)
+.+.+.+..
T Consensus 200 l~~~~vr~p 208 (591)
T PTZ00207 200 LAIVFMRLP 208 (591)
T ss_pred HHHhheeCC
Confidence 666655433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.037 Score=59.84 Aligned_cols=164 Identities=8% Similarity=-0.027 Sum_probs=100.3
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCC-----hhhHHHHHHHHHHHHHHH-hhHhHHhhhcccCchHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMS-----GPEGANVLFLWGAISNFL-PIIGASISDSFLGRFRVIA 89 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s-----~~~~~~i~~~~~~~~~~~-~~~~G~laD~~~Grr~~l~ 89 (585)
.+|..+.+.+.-|+-.++|+.+-. +.+.+.++ ..+..++.....+...+. .++-+++++|+ +|++.+-
T Consensus 5 E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~ 78 (472)
T TIGR00769 5 ELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFY 78 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHH
Confidence 345666666666666666664443 56777663 245666666655555555 78899999996 9999998
Q ss_pred HHHHHHHHHHHHHHHhhhcC--CCCCCCCCCCcc---cCCCC---------CcchhHHHHHHHHHHHHhcccccc-chhh
Q 007910 90 LGTFTALLGMILLWLTAIIP--AARPPKCNPFIE---ICPAA---------KPRQLGFLFSSFVLMSIGAGGIRP-CSLA 154 (585)
Q Consensus 90 ~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~---------~~~~~~~~~~~~~l~g~g~g~~~~-~~~~ 154 (585)
+-...+.....+.++.- .| ...+|+ ++.+ ..... .......+++. ..+-...+.+ .-.+
T Consensus 79 ~~~~~F~~~f~lF~~vl-~p~~~~~~p~--~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~---~elw~~~vvS~lFW~ 152 (472)
T TIGR00769 79 TVISPFLGFFALFAFVI-YPLSDLLHPT--ALADKLLSLLPPGFMGFIAILRIWSFALFYVM---AELWGSVVLSLLFWG 152 (472)
T ss_pred HHHHHHHHHHHHHHHHH-hcchhhcCCc--HHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH---HHHHHHHHHHHHHHH
Confidence 87777777666666542 11 111110 0000 00000 00011122222 2222222233 5678
Q ss_pred hhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 155 FGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 155 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
++.|.+.. ++-.|.+++++.+.|+|..+++.+..++.
T Consensus 153 fandi~t~-------~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 153 FANQITTI-------DEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHhcCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999998 77889999999999999999999888876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00026 Score=76.95 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=83.9
Q ss_pred hhhccccc-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q 007910 384 VVPLLSKF-TNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAF 462 (585)
Q Consensus 384 ~~~l~~r~-~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~ 462 (585)
...+.||+ |+| +.+.+|.++.+++.++++... .+...+.....+..+|.++
T Consensus 65 gG~LaDRilGrr-------r~iliG~il~~lg~lll~~~~---------------------~~~~~~~l~l~li~iG~G~ 116 (493)
T PRK15462 65 GGFLADKVLGNR-------MAVMLGALLMAIGHVVLGASE---------------------IHPSFLYLSLAIIVCGYGL 116 (493)
T ss_pred HHHHHHHccCcH-------HHHHHHHHHHHHHHHHHHHhh---------------------cchhHHHHHHHHHHHhccc
Confidence 45567787 666 778888888888766554221 0111133344455667777
Q ss_pred HhhhhHHHhhhcCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHH
Q 007910 463 NAIGQIEFYYSQFPKT--MSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVV 540 (585)
Q Consensus 463 ~~~~~~~~~~~~~P~~--~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv 540 (585)
..+...+++.+.+|++ .|+.+.+++....++|+.+++.+.+.+.... +++..|.+.++..++
T Consensus 117 ~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------Gw~~~F~iaaigm~l 180 (493)
T PRK15462 117 FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------SWAMGFGLAAVGMIA 180 (493)
T ss_pred ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------ChHHHHHHHHHHHHH
Confidence 7777788899999875 7999999999888899999999988875322 246778776666666
Q ss_pred HHHHHHHHhc
Q 007910 541 NFFYFIACSW 550 (585)
Q Consensus 541 ~~~~~~~~~~ 550 (585)
+++.++...+
T Consensus 181 ~li~~~~~~~ 190 (493)
T PRK15462 181 GLVIFLCGNR 190 (493)
T ss_pred HHHHHHHhhh
Confidence 6665544333
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00013 Score=58.15 Aligned_cols=68 Identities=22% Similarity=0.180 Sum_probs=55.8
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 26 NEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
..++...+...+.++++.|++ +.|++..+++.+.++..+...+++++.|+++||+ ||+|.++....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHHH
Confidence 344444555567788888876 5899999999999999999999999999999997 9998887665543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00068 Score=70.10 Aligned_cols=152 Identities=13% Similarity=0.046 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHH
Q 007910 23 IIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILL 102 (585)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~ 102 (585)
-.+..|+.--+--..-++++.|+.+..|+++.++....+.+..+.+++...+-++-.|+ ...|.+....++..+-.+..
T Consensus 241 gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill~~~~ 319 (422)
T COG0738 241 GVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILLLLAV 319 (422)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence 33344443333334457888999888999999999999999999999999998888896 88888877665555444444
Q ss_pred HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHH
Q 007910 103 WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYAS 182 (585)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
.+.. + ..-+...+++|+..+.++|++.+...+..|.+ .+.+... -.+
T Consensus 320 ~l~~-----------------------g-~v~~~~l~~ig~F~simfPTIfslal~~l~~~------ts~~s~~---l~m 366 (422)
T COG0738 320 ALIG-----------------------G-VVALYALFLIGLFNSIMFPTIFSLALKNLGEH------TSVGSGL---LVM 366 (422)
T ss_pred HHhc-----------------------C-hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcc------cccccee---eee
Confidence 4433 2 23445567889999999999999999999964 2222222 235
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHH
Q 007910 183 VGLSYMASITLIVYIQDKAGWVVGFG 208 (585)
Q Consensus 183 ~~ig~~~g~~~~~~l~~~~g~~~~f~ 208 (585)
...|+++-|.+-|++.|..|-...+.
T Consensus 367 aivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 367 AIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred heecchHHHHHHHHHHHhhhhHHHHH
Confidence 56888888999999999999887766
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00083 Score=72.79 Aligned_cols=203 Identities=12% Similarity=-0.008 Sum_probs=138.3
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHH-hCCChh------h----HHHHHHHHHHHHHHHhhHhHHhhhccc
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILE-YHMSGP------E----GANVLFLWGAISNFLPIIGASISDSFL 82 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~s~~------~----~~~i~~~~~~~~~~~~~~~G~laD~~~ 82 (585)
+..+|.++.++.++++.=++++....+.+.|+.++ +|-++. + ..+....+++...+.+++--++.+|+
T Consensus 254 ~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~- 332 (477)
T TIGR01301 254 KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGW- 332 (477)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 45667888899999999888888888888888753 443221 1 22334445555556666777889996
Q ss_pred C-chHHHHHHHHHHHHHHHHHHHhhhcCC-CCC--CCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhc
Q 007910 83 G-RFRVIALGTFTALLGMILLWLTAIIPA-ARP--PKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGAD 158 (585)
Q Consensus 83 G-rr~~l~~~~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 158 (585)
| ||++..++.++.++++....+..+.+. ..+ +....++ ......+..++...++|+..+.+.....+++++
T Consensus 333 g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~ 407 (477)
T TIGR01301 333 GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLP-----PPTGIKASALIVFAILGIPLAITYSIPFALASI 407 (477)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccC-----cchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 8 477778998888888877776542211 000 0000000 000124667777888999999999999999999
Q ss_pred cCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHHHHHHHHHhCcc
Q 007910 159 QFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAG--WVVGFGVPVGLMLFSTVMFLLGSSL 227 (585)
Q Consensus 159 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g--~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (585)
..+++. +..|..+++.+.+..+...+..+..|.+.+.+| -.+.+.+.++.++++.++.++..|+
T Consensus 408 ~~~~~~-----~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 408 RSSNLG-----AGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HccccC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 999521 455889999999999998888877777555444 3567777778777777776665554
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0011 Score=73.28 Aligned_cols=139 Identities=17% Similarity=0.255 Sum_probs=95.1
Q ss_pred CCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcc
Q 007910 362 PGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGV 441 (585)
Q Consensus 362 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (585)
..|+...+.+...+..|+ ..+++|.+||| ..+..|.++..+|..+.+..+
T Consensus 80 ~~w~~~~~~l~~av~~~~----~G~LSDlfGRr-------~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPF----VGRLSDLFGRR-------YFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHh----hHHHHHHhcch-------HHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 345555566666666666 56677888877 888999999999998887655
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccC
Q 007910 442 VALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTN 521 (585)
Q Consensus 442 ~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~ 521 (585)
+...++....+.|+|.+..... ...+.|..|.+.|..+.++.....-....+++.+...+.. ..+|
T Consensus 130 ---~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~------~~~W---- 195 (599)
T PF06609_consen 130 ---NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA------HSGW---- 195 (599)
T ss_pred ---cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc------CCCc----
Confidence 4455777888889887776644 4447788999999888877665444444445554433221 1234
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 007910 522 VNRAHYDYYYWILCILSVVNFFYFIACSW 550 (585)
Q Consensus 522 ~~~~~~~~~f~~~~~i~vv~~~~~~~~~~ 550 (585)
++.|++.+.+..++++..+++.+
T Consensus 196 ------Rw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 196 ------RWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHhC
Confidence 88888888887777766555543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.001 Score=72.35 Aligned_cols=100 Identities=20% Similarity=0.278 Sum_probs=82.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccc
Q 007910 445 TAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNR 524 (585)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~ 524 (585)
+...++...++.|+.|+...|+...+...-+.++.||+-+|+++.+.++|+.+|+.+...+....+.....+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW------- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW------- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence 5666888899999999999999999999999999999999999999999999999997775543333333444
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcccCc
Q 007910 525 AHYDYYYWILCILSVVNFFYFIACSWAYGS 554 (585)
Q Consensus 525 ~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~ 554 (585)
++.|.+-++++++..++.+++.+....
T Consensus 206 ---~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 206 ---RWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred ---eeehhHHHHHHHHHHheEEEEecCChh
Confidence 888999999998888776666665443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0017 Score=69.37 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=79.7
Q ss_pred hhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHH
Q 007910 384 VVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFN 463 (585)
Q Consensus 384 ~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~ 463 (585)
...+.+|+|.| +.+.++++..++...++++.. +...+.+.-+++|++|+..
T Consensus 82 ~GlLaDrlG~K-------~vL~l~~l~Wsl~t~L~~fa~----------------------Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 82 VFLLTDYLRYK-------PVLVLQALSFVCVWLLLLLGT----------------------SVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHHHHHhCch-------HHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Confidence 34456687766 788888888888877777765 6777889999999999999
Q ss_pred hhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 464 AIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTIL 505 (585)
Q Consensus 464 ~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i 505 (585)
. +...++++-+|++.|++++|.++....+|.++++.+.+.+
T Consensus 133 ~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 133 I-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred H-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999998883
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=72.55 Aligned_cols=181 Identities=13% Similarity=0.120 Sum_probs=100.9
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT 94 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~ 94 (585)
..+|...+.++...+..+..+....+....+.+..|.+... .+...+..+...++..++.++.||+ |||+.++.+.+.
T Consensus 291 ~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~ 368 (513)
T KOG0254|consen 291 KVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAG 368 (513)
T ss_pred chHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHH
Confidence 34455555555555555554433333334445566666443 4555667777778888889999996 999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
+.++.++++..........+ + ........+....+.+.....+..|....+.+|.+|. +.|++
T Consensus 369 m~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~-------~~r~~ 431 (513)
T KOG0254|consen 369 MSICLVILAVVGVFALYYPN-S---------SKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPL-------RLRSK 431 (513)
T ss_pred HHHHHHHHHHHHHHhccCCC-c---------ccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcH-------hHHhh
Confidence 99999888865422110000 0 0000112222222223333333455666788999999 88888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLM 214 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~ 214 (585)
+.++......+...+-......+....++...|.......
T Consensus 432 ~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~ 471 (513)
T KOG0254|consen 432 GASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGIC 471 (513)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 8876555444433332223333333333234444433333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.001 Score=69.79 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=114.0
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcc---cCchHHHHHHHH-
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSF---LGRFRVIALGTF- 93 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~---~Grr~~l~~~~~- 93 (585)
+.++.+..+.+-..+.+-.=.++++.|+ +++|++..-.+.+-...-+...+.+|+.|..+||. +||||-+++...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3344444454545555544456777775 57899888887777777788899999999999976 699988766554
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhh
Q 007910 94 TALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQ 173 (585)
Q Consensus 94 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~ 173 (585)
..+++.++..++..+-...-++- .+.........++++.-+.=+++-.....+-++.+|...+.++ ++|
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~------~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~----~~~- 179 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNE------RKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK----KTR- 179 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCc------ccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh----hhc-
Confidence 45556666666553322111000 0001223556777888888888888889999999999987322 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 174 TFFNWYYASVGLSYMASITLIVYI 197 (585)
Q Consensus 174 ~~~~~~~~~~~ig~~~g~~~~~~l 197 (585)
+.+++.....+|+.+|+.++++.
T Consensus 180 -Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 180 -ANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred -cchhHHHHHHhcceeeeeccccc
Confidence 78888899999999998887743
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00015 Score=75.77 Aligned_cols=180 Identities=14% Similarity=0.040 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHH-----HH---HHH-HHHHHHHhhHhHHhhhcccCchHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGAN-----VL---FLW-GAISNFLPIIGASISDSFLGRFRVI 88 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~-----i~---~~~-~~~~~~~~~~~G~laD~~~Grr~~l 88 (585)
+.++-.+...|+-..++|+...+...-+ +.+++.+.+... +. .+. .+....+..++.++.|+. |||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~-~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIF-SAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHH-HhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 5556666778888888887766554443 334554433322 11 111 222223667788889995 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHH-HHhccccccchhhhhhccCCCCCCCc
Q 007910 89 ALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLM-SIGAGGIRPCSLAFGADQFHNPDNPN 167 (585)
Q Consensus 89 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-g~g~g~~~~~~~~~~~~~~~~~~~~~ 167 (585)
+-+++++++..+.++..-+. ..+...+++.-.+. =+++-+-..+.-.+-+|.||+
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~-------------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPa----- 437 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQ-------------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPA----- 437 (538)
T ss_pred HhhHHHHHHHHHHHcCCccc-------------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchH-----
Confidence 99999999888777753310 00111222222221 123322233344556799999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc-----ccchhHHHHHHHHHHHHHHHHHHHhC
Q 007910 168 NERILQTFFNWYYASVGLSYMASITLIVYIQD-----KAGWVVGFGVPVGLMLFSTVMFLLGS 225 (585)
Q Consensus 168 ~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~-----~~g~~~~f~~~~~~~~i~~~~~~~~~ 225 (585)
+.|+++.++....+=+|+++|.....++++ ..+.+.+|++.+.++++..+..++..
T Consensus 438 --rvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 438 --RVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred --HHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 999999999999999999999999999999 77889999988888887776665544
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.55 E-value=5.9e-07 Score=97.09 Aligned_cols=184 Identities=13% Similarity=0.148 Sum_probs=107.3
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
.....+....+..+..+....+...++.+..+.+.. ........+...++.+++.++.||+ |||++++.+..+.++.
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 344444444444444433444444455566676666 2233344455667777888999996 9999999998887777
Q ss_pred HHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhcc-ccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 99 MILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAG-GIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
.+.++... .+..-.+ ...+... ++...+...+.+ +..+....+.+|.||+ +.|+++.+
T Consensus 330 ~~~~~~~~-~~~~~~~------------~~~~~~~-i~~~~l~~~~~~~g~~~~~~~~~~ElfPt-------~~R~~~~~ 388 (451)
T PF00083_consen 330 SLILGIIF-FLGVSSS------------SWWSILS-IVFLALFFAFFSLGWGPLPWIYTAELFPT-------KVRSTGIG 388 (451)
T ss_pred cccccccc-ccccccc------------ccccccc-ceeeeeccccccccccccccccccccccc-------cccccccc
Confidence 76664100 0000000 0001111 111112212222 3446667888999999 88999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+.+....+++.+++.+...+.++.+-...|.+.+.+.++..+..++..|
T Consensus 389 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lp 437 (451)
T PF00083_consen 389 LSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLP 437 (451)
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEe
Confidence 9999889999999888888877666334444544444444444444334
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.006 Score=55.67 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=83.7
Q ss_pred ChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchh
Q 007910 52 SGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQL 131 (585)
Q Consensus 52 s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (585)
++.....-.++......+..++++.+-+++ |.|+++++|.+.+++-...... . +.
T Consensus 35 ~~~~G~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~-~-----------------------~~ 89 (156)
T PF05978_consen 35 SAGLGYYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY-P-----------------------NS 89 (156)
T ss_pred cccccHHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh-h-----------------------hH
Confidence 334444456667777788888899999995 9999999999888755444332 1 56
Q ss_pred HHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 132 GFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194 (585)
Q Consensus 132 ~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 194 (585)
+.++++-++.|+|.+..++....++.+..++ ++|++..+++......+.++|.++.
T Consensus 90 ~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~-------~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 90 YTLYPASALLGFGAALLWTAQGTYLTSYSTE-------ETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH-------HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999988876 6777777776666666666665444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0016 Score=66.73 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=82.8
Q ss_pred CcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccc
Q 007910 363 GSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVV 442 (585)
Q Consensus 363 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (585)
+.+...-.+.-.+..|++ ..+.+|+||| ..+.++.+..+++.++.+...
T Consensus 71 GflGSsF~ilQ~~sS~~~----G~~SD~yGRk-------pvll~c~~~va~s~ll~~~S~-------------------- 119 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLW----GCLSDRYGRK-------PVLLACLIGVALSYLLWALSR-------------------- 119 (451)
T ss_pred hhHhhHHHHHHHHhhhhh----hhhhhhhCch-------HHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 444455555666666664 5567888888 567777776777666665544
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 443 ALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNR 507 (585)
Q Consensus 443 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~ 507 (585)
++..++.+-++.|+-.+..++ .-+++.|.++++.|+.+++..+...++|..+||++.+++..
T Consensus 120 --~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 120 --NFAAFVLARFLGGIFKGNLSV-IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred --HHHHHHHHHHhhhhccCchHH-HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 455566668888887766555 46788899999999999999999999999999999888654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0023 Score=70.71 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=94.7
Q ss_pred hhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q 007910 383 VVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAF 462 (585)
Q Consensus 383 ~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~ 462 (585)
+..++.+|+||| ..+.+++++..++-...++.. +...+.+.-++.|++...
T Consensus 137 i~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a~----------------------~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 137 IFGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFAP----------------------NYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred hheehHhhcccH-------HHHHHHHHHHHHHHHHHHHhC----------------------cHHHHHHHHHHHHhhccc
Confidence 357888898888 778888887777766555544 677788889999999999
Q ss_pred HhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHH
Q 007910 463 NAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNF 542 (585)
Q Consensus 463 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~ 542 (585)
.......+..|..+++.|+.+..+ ......++.+++...+++.. + |++.+++.....++.+
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~----------Wr~~~~~~~~~~~~~~ 248 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------D----------WRWLFWIISIPSGLFL 248 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------h----------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 77788888888887777552 3 4788888887777776
Q ss_pred HHHHHHhcc
Q 007910 543 FYFIACSWA 551 (585)
Q Consensus 543 ~~~~~~~~~ 551 (585)
++ +++.+|
T Consensus 249 ~~-~~l~~E 256 (521)
T KOG0255|consen 249 LL-WFLPPE 256 (521)
T ss_pred HH-HHccCc
Confidence 65 444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.69 Score=49.59 Aligned_cols=187 Identities=11% Similarity=-0.038 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHH
Q 007910 21 PFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMI 100 (585)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~ 100 (585)
+.+....++.+++--...-..+.|+.+-+.=+---.+....+-.+...++.+..|...||. .|.+++..+.+..-+...
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv~ 83 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSVA 83 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHHH
Confidence 3344444555555544555566666655432322233333444555667788889999996 999999988876555443
Q ss_pred HHHHh----hhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHH-HhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 101 LLWLT----AIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMS-IGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g-~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
+.+.. ...+.-. ..+......++....+.| +..-.....-.++=-|+...=. +.++..+.+.
T Consensus 84 ~s~~~~~~l~~~~~~~------------~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~-~~~~~~La~~ 150 (432)
T PF06963_consen 84 ASCALFLLLLSYPSSS------------SQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIA-GGDPGALARM 150 (432)
T ss_pred HHHHHHHHHHhCCccc------------cccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhc-CCChhhHHHH
Confidence 33321 1011000 000011112222222222 1111111111122223322211 1112455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~ 221 (585)
.+...=.=-+.-++||++.|.+....|.+....+.+...+++..+=
T Consensus 151 NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vE 196 (432)
T PF06963_consen 151 NATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVE 196 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHH
Confidence 5554444455678899999999888888777666666666665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=47.38 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhh
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTA 106 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~ 106 (585)
+.+.+.+.++.++|.++.+++.+.-.+++.++.+...++.++. .+++.+..+.+...+..+.+++.+
T Consensus 12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777899999999999999999999999999999999995 889999999999888888888765
|
Note that many members are hypothetical proteins. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.019 Score=64.38 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=101.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-----hhC-------CCC---C-------CC----ccccchhh
Q 007910 398 LSYRQRIGIGLAISCVAMAVAALVERK----RRSAAI-----REG-------LAD---N-------PE----GVVALTAM 447 (585)
Q Consensus 398 ~~~~~~~~~g~~l~~i~~~~~~~~~~~----~~~~~~-----~~~-------~~~---~-------~~----~~~~~~~~ 447 (585)
.++.+++++|+++++++.++.++-+.. +.+... ... ..+ + +. ..+...+.
T Consensus 159 ~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (735)
T KOG3626|consen 159 GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFL 238 (735)
T ss_pred cCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHH
Confidence 567789999999999999988765311 000000 000 000 0 01 11111344
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCc--ccc
Q 007910 448 WLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNV--NRA 525 (585)
Q Consensus 448 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~--~~~ 525 (585)
.++.+.++.|+|+.-.++-+..|+.+.+-++....+.|+......+|-++|..+.+...+..-.-+. -+.++ +|.
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~---~~~~it~~DP 315 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGL---SPIGITPTDP 315 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeecccc---CCCCCCCCCc
Confidence 6778899999999999999999999999999999999999999999999999988887654321100 00111 122
Q ss_pred hhHH----HHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 526 HYDY----YYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 526 ~~~~----~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
.+-. -|++.+++.++.++.++.+-++.++.
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 2222 36677888888888777766665543
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.13 Score=55.43 Aligned_cols=161 Identities=12% Similarity=0.074 Sum_probs=102.2
Q ss_pred CcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccc
Q 007910 363 GSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVV 442 (585)
Q Consensus 363 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (585)
++....+.++..+..|+++.+ ..|.+ +-.+-+..|.+++.+|-++.+..+-. +
T Consensus 74 G~viaa~slg~~i~~liF~~W----s~k~~------~~k~Pli~s~ii~~~g~llY~~l~~~-----------------~ 126 (488)
T KOG2325|consen 74 GLVIAASSLGHAIFSLIFGIW----SNKTG------SVKKPLIVSFLIAIIGNLLYLALAYV-----------------P 126 (488)
T ss_pred hHHHHHHHHHHHhcchhhccc----ccccC------CcccCHHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence 444555677777777765432 22222 12355888999999998887555511 1
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccc-cC
Q 007910 443 ALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVS-TN 521 (585)
Q Consensus 443 ~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~-~~ 521 (585)
.-..+++.++.++.|+|.+-. ...=.|+.+..-.+.|.++++..+.+..+|..+||.+...+..... .+..|.+ .+
T Consensus 127 ~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~--~G~~i~~~~~ 203 (488)
T KOG2325|consen 127 NGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE--KGFMILPGLI 203 (488)
T ss_pred cchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC--CceEEcCcce
Confidence 115667888999999985433 2345666666666778888888887778888888887666543211 1123333 22
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 522 VNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 522 ~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
.| -|...=|+.+.+.++.+++..++.+|..+.
T Consensus 204 ~n--~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 204 FN--MYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred EE--ecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 23 355556777888888888888888776554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.16 Score=55.93 Aligned_cols=175 Identities=12% Similarity=-0.054 Sum_probs=91.7
Q ss_pred CcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHH
Q 007910 16 GLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTA 95 (585)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~ 95 (585)
+.+......++..+..+.|-. ...-.+...+|-+....+.+++++..+..+|+.++|+++++- -|+.. .+-..+-
T Consensus 15 ~~~~l~~~~f~sg~~~L~yEv---~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~-~~e~~i~ 89 (521)
T PRK03612 15 DRALLLAAVFVCAACGLVYEL---LLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFV-AVELLLA 89 (521)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHH-HHHHHHH
Confidence 334444444444444444433 333444555788888899999999999999999999988553 33322 2211111
Q ss_pred HHH--H-HHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 96 LLG--M-ILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 96 ~~g--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
.++ + .++.... +. . ......++...++.++..|+..|....+..+... ++-
T Consensus 90 l~~~~~~~ll~~~~--~~-~---------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~--------~~~ 143 (521)
T PRK03612 90 LLGGLSALILYAAF--AF-Q---------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD--------QHL 143 (521)
T ss_pred HHHHHHHHHHHHHH--HH-H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------cch
Confidence 111 1 1111111 00 0 0011122333445677777777776666644322 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchh-HHHHHHHHHHHHHHHHH
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQD-KAGWV-VGFGVPVGLMLFSTVMF 221 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~-~~g~~-~~f~~~~~~~~i~~~~~ 221 (585)
++..+-.|....+|+++|.++.+++.- .+|-. ..+.++.+..+++++++
T Consensus 144 g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~ 194 (521)
T PRK03612 144 GHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFL 194 (521)
T ss_pred hhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 344666677777888888877776543 56644 44444443334443333
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.00061 Score=75.18 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=3.0
Q ss_pred CCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHHH--------
Q 007910 362 PGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKR----RSAA-------- 429 (585)
Q Consensus 362 ~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~----~~~~-------- 429 (585)
.+.+...+-+..++...++. -+|.| .++.+++++|.++++++.++++.-+... ....
T Consensus 40 ~G~i~s~~di~~~~~~~~vs--------y~g~~---~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~ 108 (539)
T PF03137_consen 40 SGLISSSYDIGSLVVVLFVS--------YFGGR---GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSS 108 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHhhh---cCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccc
Confidence 34444555555555444422 34444 5677899999999999988877643110 0000
Q ss_pred HhhCCC--------C--------CCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHH
Q 007910 430 IREGLA--------D--------NPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAV 493 (585)
Q Consensus 430 ~~~~~~--------~--------~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~i 493 (585)
....++ + .++.........++++.++.|+|..-.++-+.+|+.|.++++..+.+.|+......+
T Consensus 109 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~l 188 (539)
T PF03137_consen 109 ISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSIL 188 (539)
T ss_dssp -------------------------------------------SSS----------------------------------
T ss_pred cccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhc
Confidence 001112 0 001111112456888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcc--ccccCcccchhHHH----HHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 494 GNLVGSLIVTILNRVTGSGGKVS--WVSTNVNRAHYDYY----YWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 494 g~~ig~~l~~~i~~~~~~~~~~~--w~~~~~~~~~~~~~----f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
|-.+|..+.+...+..-.-+..+ =+.-+-+|..|-.. |++.+.+.++.++.+..+-|+.++.
T Consensus 189 GPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 189 GPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 99999888776654321100000 00000011111222 4456666666666656555555444
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.018 Score=62.23 Aligned_cols=126 Identities=22% Similarity=0.288 Sum_probs=105.1
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhH-HhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 007910 41 MIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGA-SISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPF 119 (585)
Q Consensus 41 ~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G-~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 119 (585)
+..|+...+++++.+.+...+..+....+..++.. .+.-. +|-|+++.+|++...+.....+++.
T Consensus 264 ~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~-l~~~~~i~lGl~~~~~~~~~~af~~------------- 329 (463)
T KOG2816|consen 264 LLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSI-LGEKRLISLGLLSEFLQLLLFAFAT------------- 329 (463)
T ss_pred EEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHhhHHHHHHHHHHHHHHHhc-------------
Confidence 45677788999999999999999999999999888 56666 6999999999999999999999876
Q ss_pred cccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 120 IEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
+.|+.+...++.++ .+...|...++.+.+..+ +++++.+++....-.+..+++|.+-+.+.
T Consensus 330 ----------~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~-------~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 330 ----------ETWMMFAAGVVVAL-AGIVFPAIRAFASILVSP-------EEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred ----------cchhhhHHHHHHHh-hcchhHHHHhHHHhhccc-------ccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 55666666655544 455678889999999988 88999999999999999999988866553
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.047 Score=57.56 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=64.3
Q ss_pred HhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchH-HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCC
Q 007910 48 EYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFR-VIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAA 126 (585)
Q Consensus 48 ~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~-~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (585)
.-|.+...+|.+.......+++++++.|.++||. ...| +.++......++...+...+..+.
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~v~~~~l~~~t~~~~---------------- 357 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFALVGTLMLLTCTLFLG---------------- 357 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHhhccCC----------------
Confidence 3477778899999999999999999999999997 5544 444444444444222221111111
Q ss_pred CcchhHHHHHHHHHHHHhccccccchhhhhhccCCC
Q 007910 127 KPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHN 162 (585)
Q Consensus 127 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 162 (585)
..+.++..-.+.|+......|...-+..|..-|
T Consensus 358 ---~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyP 390 (480)
T KOG2563|consen 358 ---DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYP 390 (480)
T ss_pred ---ceEehhhhHHHHHHhhcCCCCcceeeeeeeccc
Confidence 234456666778888888899989888888654
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.1 Score=55.01 Aligned_cols=125 Identities=13% Similarity=0.110 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcc---
Q 007910 402 QRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKT--- 478 (585)
Q Consensus 402 ~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~--- 478 (585)
+-+.+|.++..+|.+++...... +......+...+.++..++++|.+.+=|....+..++++++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-------------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-------------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-------------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-------------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 34667778888888775554400 00011234456778889999999999999999999998876
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 007910 479 MSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYGSC 555 (585)
Q Consensus 479 ~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~ 555 (585)
.|..+...+..+.++|..++..+.+++.+. -+|...|++.++..+++.+.++...++++.+
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~ 129 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRKV 129 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--S
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcCc
Confidence 456677777888889999988876665422 2356778888888888888777665555544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.5 Score=49.70 Aligned_cols=319 Identities=7% Similarity=-0.116 Sum_probs=188.3
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCccc
Q 007910 43 FYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEI 122 (585)
Q Consensus 43 ~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 122 (585)
.+..--.+...........++.....+..+.....+|-..|+-..+..-....+++.+...+.. ++.
T Consensus 9 iLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a------------ 75 (654)
T TIGR00926 9 ILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGA------------ 75 (654)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hcc------------
Confidence 3333334455556677788888889999999999999987777778777777777777666644 211
Q ss_pred CCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007910 123 CPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAG 202 (585)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g 202 (585)
...........+..+.+.++.++..++-+++.++.....++ +++.+..+++++..+.+.+. .+++..+.....
T Consensus 76 --~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~----~~~~~~~s~F~~fY~~iNiG-Slis~~i~~~l~ 148 (654)
T TIGR00926 76 --IPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE----RQLSLRSRFFSFFYFAINAG-SLISTIITPILR 148 (654)
T ss_pred --CcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc----cchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 00011123445677778899999999999999999988654 77889999999999988775 556666655432
Q ss_pred -hhH------HHHH-HHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCC
Q 007910 203 -WVV------GFGV-PVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTA 274 (585)
Q Consensus 203 -~~~------~f~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (585)
+.. .|.. .++.+++.++.+.......+.-++.+.....+.+++.......+.
T Consensus 149 ~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~-------------------- 208 (654)
T TIGR00926 149 GDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRK-------------------- 208 (654)
T ss_pred HhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHH--------------------
Confidence 221 1333 333444444455554444333333222111122222111111100
Q ss_pred CCchhhhhhhhhhccccccccccCCCCCCCcccc--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhc-c---
Q 007910 275 PTEKLRFLNRACVVQNREKELDLDGKAIEPWKLC--TVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAK-S--- 348 (585)
Q Consensus 275 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 348 (585)
+. .. ........|... .....++.+...+.+.++...+.+++.+.+ ..|.. .
T Consensus 209 ---------~~---~~------~~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~----~~Q~~s~~~~ 266 (654)
T TIGR00926 209 ---------RF---ST------RSEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWAL----FDQQGSRWTL 266 (654)
T ss_pred ---------hh---cc------CCcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH----HhcchhHHHH
Confidence 00 00 000000122111 112234577887888887766766665544 22221 1
Q ss_pred -cccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 349 -MDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRS 427 (585)
Q Consensus 349 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~ 427 (585)
++...+. +...+.....++.+-.++..++...+..++..+++++ ....+.+.-+.+.+.++.+.++.....+..
T Consensus 267 qa~~m~~~--l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~ 341 (654)
T TIGR00926 267 QATRMDGD--VGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLK 341 (654)
T ss_pred HHHHhcCc--cCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 2222334567788888888888887777899988666 566777888888888888888877877666
Q ss_pred H
Q 007910 428 A 428 (585)
Q Consensus 428 ~ 428 (585)
.
T Consensus 342 ~ 342 (654)
T TIGR00926 342 V 342 (654)
T ss_pred H
Confidence 4
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=3 Score=43.93 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=46.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 007910 445 TAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLI 501 (585)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l 501 (585)
+-++++....++|+..+-...-.+.++.+..|++++..+..+..+....|-..|..+
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 455677778888998888888889999999999999888888777777777777665
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.81 Score=49.18 Aligned_cols=142 Identities=18% Similarity=0.099 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhHhHHhhhcccCch-------HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcch
Q 007910 58 NVLFLWGAISNFLPIIGASISDSFLGRF-------RVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQ 130 (585)
Q Consensus 58 ~i~~~~~~~~~~~~~~~G~laD~~~Grr-------~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (585)
+..+.-.+.-.++.|+-.++--|. +++ .-+-++..+...+++++.... .+...| .+..+
T Consensus 328 ~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~--~~~~~~-----------~~~~s 393 (498)
T COG3104 328 WFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAG--IWFGGP-----------SGLVS 393 (498)
T ss_pred HHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHH--HhhcCC-----------CCCcC
Confidence 334444444445555555555452 333 224455566666666555541 000000 12237
Q ss_pred hHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH------hhcccchh
Q 007910 131 LGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVY------IQDKAGWV 204 (585)
Q Consensus 131 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~------l~~~~g~~ 204 (585)
.++++.+.+++++|+=+..|+..++++...|+ +-.+..++.+......|..++..+++. ..+.....
T Consensus 394 ~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~-------~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~ 466 (498)
T COG3104 394 VWWLVLSYVLQSFGELFISPVGLSMVTKLAPP-------ALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEG 466 (498)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHhChH-------HHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhh
Confidence 88999999999999999999999999999999 888888999998888888887666652 12223344
Q ss_pred HHHHHHHHHHHHHHHH
Q 007910 205 VGFGVPVGLMLFSTVM 220 (585)
Q Consensus 205 ~~f~~~~~~~~i~~~~ 220 (585)
..|+..+...++....
T Consensus 467 ~~F~~~g~v~i~~~~~ 482 (498)
T COG3104 467 RVFGTIGVVAIVIGIL 482 (498)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5565555444433333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.2 Score=52.98 Aligned_cols=165 Identities=15% Similarity=0.054 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCC
Q 007910 318 AIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPR 396 (585)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~ 396 (585)
+++....+....-+.|...-+ .+- +.+..+..... .+.++...++..++..|+.+...++.-.|+|||+
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tP-yl~~lGvphk~--------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR- 102 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTP-YLQSLGVPHKW--------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR- 102 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccH-HHHHcCCCccc--------ccccccccccccceeccccccccccccccccccc-
Confidence 344444444455555555555 333 23333333322 4567778899999999999988888888998883
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCc-cccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcC
Q 007910 397 GLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEG-VVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQF 475 (585)
Q Consensus 397 ~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~ 475 (585)
--+..+....++++.++++.. +. .+-+.|+++. +-.-.....++.+.++-++.-+...+.=++..+..
T Consensus 103 -----PfI~~~s~~i~~~l~Lig~aa----Di--g~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~ 171 (498)
T KOG0637|consen 103 -----PFILAGSLLIAVSLFLIGYAA----DI--GLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLA 171 (498)
T ss_pred -----chHHHhhHHHHHHHhhhhhHh----hh--hHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhc
Confidence 234556666777777777665 11 1223344432 33344556777777888888888888888888875
Q ss_pred CcchhhH-HHHHHHHHHHHHHHHHHHHHH
Q 007910 476 PKTMSSI-GVALLSLGMAVGNLVGSLIVT 503 (585)
Q Consensus 476 P~~~rg~-~~g~~~~~~~ig~~ig~~l~~ 503 (585)
-.+.+-+ +.+.+.+...+||.+|-.+.+
T Consensus 172 ~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 172 RGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred cChhhhhccchhHHHHHHhcceeeeeccc
Confidence 5555555 999999999999999877644
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.53 Score=46.56 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=63.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCc
Q 007910 398 LSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPK 477 (585)
Q Consensus 398 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~ 477 (585)
.+++..+.+|.+...+|+........ +. .+..+.+.+.+...+.+.+..+...+...--.+..|.
T Consensus 63 ~gp~~~l~iG~~~~~~GY~~~~l~~~--------~~-------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~ 127 (250)
T PF06813_consen 63 FGPWVVLLIGAVLGFVGYGLLWLAVS--------GR-------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR 127 (250)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh--------Cc-------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence 45557788898888888876655431 11 1123555566666666677777777777777788985
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 478 TMSSIGVALLSLGMAVGNLVGSLIVTI 504 (585)
Q Consensus 478 ~~rg~~~g~~~~~~~ig~~ig~~l~~~ 504 (585)
.||++.|+.-...++++.+-..+...
T Consensus 128 -~RG~vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 128 -SRGTVVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred -ccCceehhhhHHHHhHHHHHHHHHHH
Confidence 79999999888888888776665443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.45 E-value=6.1 Score=40.93 Aligned_cols=135 Identities=13% Similarity=0.098 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhH
Q 007910 370 ILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWL 449 (585)
Q Consensus 370 ~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (585)
.....+.+++ ...+.||+||| +...+..++-+++.+. . ...+...+
T Consensus 79 f~Ss~i~g~~----~G~laD~~Grk-------~~cl~~cily~~scl~----k-------------------~~~~~~~L 124 (354)
T PF05631_consen 79 FASSAIFGTF----VGSLADRYGRK-------KACLLFCILYSLSCLT----K-------------------HSSNYPVL 124 (354)
T ss_pred HHHHHHHHHH----HHHHHHhcCch-------HHHHHHHHHHHHHHHH----H-------------------hccccHHH
Confidence 3444444444 66778898887 4454444444444332 1 01245668
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhc-----CCcchhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcc
Q 007910 450 VPQNCLIGLAEAFNAIGQIEFYYSQ-----FPKTMSSIGVALLS-LGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVN 523 (585)
Q Consensus 450 i~~~~l~g~g~~~~~~~~~~~~~~~-----~P~~~rg~~~g~~~-~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~ 523 (585)
++.-++-|++..+.+...-+|...+ .|++..+...+... +.+++-......+.....+..+.+.
T Consensus 125 ~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~---------- 194 (354)
T PF05631_consen 125 LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGP---------- 194 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCC----------
Confidence 8889999999999998888887644 56666555555444 3444444444444444433332111
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhccc
Q 007910 524 RAHYDYYYWILCILSVVNFFYFIACSWAY 552 (585)
Q Consensus 524 ~~~~~~~f~~~~~i~vv~~~~~~~~~~~~ 552 (585)
...|.....+.+++.++.....+|.
T Consensus 195 ----vaPF~~a~~~l~~~~~~I~~~W~EN 219 (354)
T PF05631_consen 195 ----VAPFDAAIVLLAVAAVLILKTWPEN 219 (354)
T ss_pred ----cchHHHHHHHHHHHHHHHHhccccc
Confidence 1236665666666665544444443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.91 Score=48.92 Aligned_cols=87 Identities=18% Similarity=0.093 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHhhhc---CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCccc
Q 007910 448 WLVPQNCLIGLAEAFNAIGQIEFYYSQ---FPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNR 524 (585)
Q Consensus 448 ~~i~~~~l~g~g~~~~~~~~~~~~~~~---~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~ 524 (585)
......++..+|..+......+.+.|. -|.+ +|..++....+..+|+.++..+.|.+....+
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-------------- 152 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-------------- 152 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC--------------
Confidence 344566777888888888888888765 5655 8899999999999999999998877653322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcc
Q 007910 525 AHYDYYYWILCILSVVNFFYFIACSWA 551 (585)
Q Consensus 525 ~~~~~~f~~~~~i~vv~~~~~~~~~~~ 551 (585)
++..|++.+.+.++..+..+.+..|
T Consensus 153 --~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 153 --PQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred --CeEEehHHHHHHHHHHHHHHHhhhh
Confidence 2344666666666665555555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.78 Score=49.33 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 458 LAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILN 506 (585)
Q Consensus 458 ~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~ 506 (585)
+-.+.-.+++..++....-++.++.+.-...+.+++|-+++..+.-.+.
T Consensus 130 fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 130 FLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 3335666778888888877888888888888888888887776655543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.6 Score=39.89 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=53.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 445 TAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTIL 505 (585)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i 505 (585)
+.+.++++-++.|+|.++.+.+.-.++.+...++.+++..|++......+..+|..+.-.+
T Consensus 88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888899999999999999999999999999999999999998888888888765443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=93.08 E-value=6.2 Score=42.87 Aligned_cols=42 Identities=14% Similarity=0.056 Sum_probs=37.2
Q ss_pred hhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 465 IGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILN 506 (585)
Q Consensus 465 ~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~ 506 (585)
.-.+.++-+....++..+..++..+..++|..+++.+...+.
T Consensus 148 ~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 148 LLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366788889999999999999999999999999999877765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.7 Score=44.56 Aligned_cols=153 Identities=10% Similarity=0.118 Sum_probs=77.4
Q ss_pred HHHHHHHH-HHhCCChhhHH-HHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 007910 39 ANMIFYLI-LEYHMSGPEGA-NVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKC 116 (585)
Q Consensus 39 ~~~~~yl~-~~l~~s~~~~~-~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 116 (585)
+++..|+. .+.++++.+.. -+.-+..-...+.-++.=.+.|-. -.|.++++-.+.......++.+..+...
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~sV~~------ 97 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGPSVKA------ 97 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcCCchh------
Confidence 35556655 34567666553 333344444555556666788984 6677776654444444444444331111
Q ss_pred CCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 117 NPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVY 196 (585)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~ 196 (585)
.=+ +-+..|....+--++-+.++..-++ +.+.+..+......-.|...|..++..
T Consensus 98 -----------------mQv----lE~FyG~~tAaEIAYysYIYs~Vd~----~~Yqrvt~y~RaA~L~g~~~g~vlaQl 152 (433)
T KOG3810|consen 98 -----------------MQV----LEFFYGPATAAEIAYYSYIYSKVDP----EMYKRVTGYCRAAFLVGKFVGSVLAQL 152 (433)
T ss_pred -----------------eee----ehhhcChHHHHHHhhhheeeeecCH----HHHHHHHHHhHHHHHHHhHHHhHHHHH
Confidence 111 1122334444444555555544332 566666676666666777777666665
Q ss_pred hhc--ccchhHHHHHHHHHHHHHHHHHHH
Q 007910 197 IQD--KAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 197 l~~--~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
+.. ..++...=+++.....++..+.++
T Consensus 153 Lvs~~~~sy~~LN~ISL~~~~ia~~~A~f 181 (433)
T KOG3810|consen 153 LVSLETLSYTTLNYISLAEVTIAVLLALF 181 (433)
T ss_pred HhhhcccchhhhchhhHHHHHHHHHHHhh
Confidence 543 233332223444444444444443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.92 E-value=18 Score=37.89 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 448 WLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNR 507 (585)
Q Consensus 448 ~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~ 507 (585)
..+..+.+.+......+.+.+++..+.+|+...|++|.+.|...++|+.-=..+...+.+
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D 430 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLAD 430 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcc
Confidence 344567777777778888899999999999999999999887777776554444444443
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.36 E-value=24 Score=38.17 Aligned_cols=169 Identities=10% Similarity=-0.028 Sum_probs=96.2
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCC---hhhHHHHHHHHHH-HHHHHhhHhHHhhhcccCchHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMS---GPEGANVLFLWGA-ISNFLPIIGASISDSFLGRFRVIAL 90 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s---~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~~ 90 (585)
..++..+.+.+.-++-.+.|+.+- -+.+.+.++ +.....+-..... .+.+..++-+++.+++ .|.+++-.
T Consensus 24 ~E~~kflpl~Ll~f~I~~ny~~lR-----~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~ 97 (509)
T COG3202 24 YELKKFLPLALLFFCILFNYNLLR-----SLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYI 97 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHH
Confidence 345666666665555555544332 245555554 3344444444444 5678888999999995 99999988
Q ss_pred HHHHHHHHHHHHHHhhhcC--CCCCCC---CCCCcccCCC--------CCcchhHHHHHHHHHHHHhccccccchhhhhh
Q 007910 91 GTFTALLGMILLWLTAIIP--AARPPK---CNPFIEICPA--------AKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGA 157 (585)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~--~~~~~~---~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 157 (585)
-...+...++++++.- .| .+.+|+ -++..+.+|. -+..+...+++.-=+-| .-...-.-..+.-
T Consensus 98 ~~~~F~~fF~LFa~Vi-~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWg--slV~S~lFw~faN 174 (509)
T COG3202 98 ILGFFLGFFALFAFVI-YPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWG--SLVLSLLFWQFAN 174 (509)
T ss_pred HHHHHHHHHHHHHHHH-hccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 8887777777777654 33 233332 0011011110 00001122222211111 1111112345566
Q ss_pred ccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 158 DQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQD 199 (585)
Q Consensus 158 ~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 199 (585)
|++.. ++-.|.++.++.+.|++..++..+..++..
T Consensus 175 eitt~-------~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 175 EITTI-------EEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HhhhH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777 777889999999999999998888888765
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.06 E-value=27 Score=38.20 Aligned_cols=169 Identities=12% Similarity=0.039 Sum_probs=88.2
Q ss_pred CCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhC---CChhhHHHHHHHHHH-HHHHHhhHhHHhhhcccCchHHHHH
Q 007910 15 GGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYH---MSGPEGANVLFLWGA-ISNFLPIIGASISDSFLGRFRVIAL 90 (585)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~s~~~~~~i~~~~~~-~~~~~~~~~G~laD~~~Grr~~l~~ 90 (585)
..++..+.+.+.-|+..+.|..+ --+.+.+= .++.....+-....+ .+.+...+-.+++|++ +|.+++-+
T Consensus 21 ~E~~k~~~l~~m~f~i~f~y~~l-----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~ 94 (491)
T PF03219_consen 21 SELKKFLPLALMFFFILFNYTIL-----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYI 94 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence 33455555555555544443321 11223221 233334444443333 3455567789999996 99999887
Q ss_pred HHHHHHHHHHHHHHhhhcCC--CCCCCCCCCcccCCCCCcc---------hhHHHHHHHHHHH-Hhccccccchhhhhhc
Q 007910 91 GTFTALLGMILLWLTAIIPA--ARPPKCNPFIEICPAAKPR---------QLGFLFSSFVLMS-IGAGGIRPCSLAFGAD 158 (585)
Q Consensus 91 ~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~g-~g~g~~~~~~~~~~~~ 158 (585)
....+...+.+.++.- .|. ...|+. +-+........ +.|.+.+.-++.- .|.-...-.-.++.-|
T Consensus 95 ~~~~F~~fF~~f~~vl-yP~~~~lhp~~--~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~ 171 (491)
T PF03219_consen 95 IIIPFLGFFALFAFVL-YPNRDILHPDA--FADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANE 171 (491)
T ss_pred HHHHHHHHHHHHHHHH-hhchhhcCCCH--HHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7776666666655532 221 111110 00000000000 1111111111111 1111111234667778
Q ss_pred cCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 159 QFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQD 199 (585)
Q Consensus 159 ~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~ 199 (585)
.++. ++-.+.++++..+.|+|.+++..+..++.+
T Consensus 172 itt~-------~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 172 ITTV-------EEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred cCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 788899999999999999999888887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=90.78 E-value=9.7 Score=40.46 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=48.9
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 445 TAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILN 506 (585)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~ 506 (585)
+..++-+.-++.|++.+. -.+-++|++..+|++.--++.+......-+|..++..+...+.
T Consensus 93 sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 93 SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888888655 6677899999999998888988888777788888887777655
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.33 E-value=7.6 Score=41.91 Aligned_cols=113 Identities=15% Similarity=0.171 Sum_probs=72.7
Q ss_pred HHHHHhhHhHHhh---hcccCchHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCCCCCCcccCCCCCcchhHHHHHHHH
Q 007910 66 ISNFLPIIGASIS---DSFLGRFRVIALGTFTALLGMILLWLTAIIPA---ARPPKCNPFIEICPAAKPRQLGFLFSSFV 139 (585)
Q Consensus 66 ~~~~~~~~~G~la---D~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (585)
+..++.++.+.+. +++ ||++++.++..+..++.++..++ .|. +.+.+-+ +....+++....+.-+
T Consensus 291 g~v~~g~~~~~l~~rir~f-g~~~~~~~~~~~~~~~~~li~l~--~p~dap~~~t~~~------~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 291 GEVIGGLDFSILSKRIRGF-GRKPTVLIGIIIHLIGFLLIHLS--FPNDAPLRPTDSP------PLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHHHHHHhhhhhhc-ccCcchhHHHHHHHHHHHHHhcc--ccccCCCCCCccc------ccccccchhHHHHHHH
Confidence 3344445555554 554 99999999999888888777654 332 1111111 1122234556666678
Q ss_pred HHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007910 140 LMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIV 195 (585)
Q Consensus 140 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 195 (585)
++|++-+......+.++++.+|. +|..+++++-.-..++..++-+..+
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~~~--------~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLYPD--------DRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHHHHHHHHhhhhh
Confidence 89999999999999999999954 4566777766666666665444433
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=89.53 E-value=12 Score=40.33 Aligned_cols=135 Identities=13% Similarity=0.034 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
..++.|+..+ |+++...+..-+...+....+.+...++-+|+ |.-|+=+++.........++..+--.|. ++
T Consensus 279 ~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~------~~ 350 (432)
T PF06963_consen 279 GLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG------SP 350 (432)
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC------CC
Confidence 4567888777 99999999999999999999999999999996 9999998888877665555554321221 00
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIV 195 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~ 195 (585)
| ...+...++.+.++--+|.=++=-+.+-++=|..|+ ++|++..+.-....++--++...++-
T Consensus 351 ~-------~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~-------~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 351 F-------SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPE-------SERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred c-------hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCH-------HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 011444555555555555555556667777788888 89999998888888888777665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=88.57 E-value=5.1 Score=42.41 Aligned_cols=111 Identities=19% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCc
Q 007910 398 LSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPK 477 (585)
Q Consensus 398 ~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~ 477 (585)
++...++.+...++.+++++.++.. +.+.-++..++.+++.++.=.....+. ..+|+
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~----------------------~v~~~l~Gv~las~ssg~GE~tfL~lt-~~y~~ 142 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSP----------------------SVWVRLLGVVLASLSSGLGEVTFLSLT-HFYGK 142 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeecc----------------------chhHHHHHHHHHhhhhhhhHHHHHHHH-HhcCc
Confidence 4455778888888888988877654 333344455555554444444444442 23443
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 007910 478 TMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSW 550 (585)
Q Consensus 478 ~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~ 550 (585)
...+.|....+.++.+|+..-..+.. .+ + ..+..+.....+-++.++.|++..+
T Consensus 143 ----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g------~--------s~~~tll~~~~lp~~~~~~~f~~L~ 196 (402)
T PF02487_consen 143 ----SSLSAWSSGTGGAGLVGALYYLGLTT-LG------L--------SPRTTLLIMLVLPAIFLLSYFFLLP 196 (402)
T ss_pred ----cccccccCCcChhhHHHHHHHHHHHH-hC------c--------CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34677777777788888765444332 11 1 1244566666665555555555544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.92 E-value=3.3 Score=43.19 Aligned_cols=160 Identities=14% Similarity=0.150 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhh
Q 007910 369 AILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMW 448 (585)
Q Consensus 369 ~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (585)
.-..-+++.|++|- -..+|+|||+ + ++.....+.+.-++.+++.. +..+.++.+.+....
T Consensus 76 P~sLKllWaPiVDs---~y~k~~Grrk---s---Wvvp~q~llG~~mllLs~~v---------~~~~g~ng~~p~v~~-- 135 (510)
T KOG3574|consen 76 PFSLKLLWAPIVDS---VYSKRFGRRK---S---WVVPCQYLLGLFMLLLSYLV---------DRGLGGNGGLPNVVA-- 135 (510)
T ss_pred HHHHHHHHHhhhHH---HHHHhhcccc---c---eeeehHHHHHHHHHHHhhCC---------CcccccCCCCcchHH--
Confidence 34567788888874 3566888773 2 22222232333333333221 011111222222222
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CccccccCcccc--
Q 007910 449 LVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGG-KVSWVSTNVNRA-- 525 (585)
Q Consensus 449 ~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~-~~~w~~~~~~~~-- 525 (585)
....++++-+.-+.-..++..++.....++.-|-+.-...+....|-+++..+.-.++...=-+. --.| | .+++
T Consensus 136 lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~-P--~~~g~I 212 (510)
T KOG3574|consen 136 LTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSI-P--LDQGFI 212 (510)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcC-c--CccceE
Confidence 33345666667778888899999988888888887777777777777776655433321000000 0001 1 1122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcc
Q 007910 526 HYDYYYWILCILSVVNFFYFIACSWA 551 (585)
Q Consensus 526 ~~~~~f~~~~~i~vv~~~~~~~~~~~ 551 (585)
.+..++++.+.+..++-....++.++
T Consensus 213 tL~gy~~fwg~~~~vat~Lv~~~kke 238 (510)
T KOG3574|consen 213 TLAGYLWFWGALFIVATTLVALLKKE 238 (510)
T ss_pred EhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 24566777777777776665555443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=86.24 E-value=52 Score=36.06 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHHHHHH----hhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 454 CLIGLAEAFN----AIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNR 507 (585)
Q Consensus 454 ~l~g~g~~~~----~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~ 507 (585)
+++-.+|.+. +.-.+.++-+..+.++..+..+++.+..++|..+++.+...+..
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455443 33457778888999999999999999999999999998877665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.70 E-value=56 Score=35.22 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007910 445 TAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTI 504 (585)
Q Consensus 445 ~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~ 504 (585)
+-++.++..+++|+..+......+.+..+.+++++|..+..+..+...+|-.+|+.+.-.
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~ 430 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL 430 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455568889999999999999999999999999999999999999999988877443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=85.52 E-value=3.8 Score=44.16 Aligned_cols=119 Identities=12% Similarity=0.076 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhcccCch-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHH
Q 007910 56 GANVLFLWGAISNFLPIIGASISDSFLGRF-RVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFL 134 (585)
Q Consensus 56 ~~~i~~~~~~~~~~~~~~~G~laD~~~Grr-~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (585)
.-.+...|+++-.+|..+..+.-=. ++| +.+.+..+.-.+...+..+...-|.-..|. -| .+-+..
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~~p--~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~--~~---------~~d~~~ 375 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFMWP--DEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPV--FF---------PGDAYF 375 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEee--CCCccchHHHHHHHHHHHHHHHHhcCCccccCCe--ee---------cccHHH
Confidence 3455667777777777765543211 222 244445555555555544443111000000 00 144666
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 007910 135 FSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLI 194 (585)
Q Consensus 135 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~ 194 (585)
++..++.|+-+|-..+.+..+..+..++ ++|..+-.+...+.++|-.+|..++
T Consensus 376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~-------~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 376 IILMLLFGFSNGYLGSLSMCLAPRQVDP-------HEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778899999999988888888888766 6777777777778888888776553
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.18 E-value=31 Score=33.37 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCc-chhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 007910 446 AMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPK-TMSSIGVALLSL-GMAVGNLVGSLIVTILN 506 (585)
Q Consensus 446 ~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~g~~~~-~~~ig~~ig~~l~~~i~ 506 (585)
...++......+++.+...+....++.+..|+ +.|+...+.... ...++..+++.+.+.+.
T Consensus 94 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 94 LALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555668888889999999999999998 678888888777 56677777776655544
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.79 E-value=9.9 Score=37.82 Aligned_cols=140 Identities=10% Similarity=0.121 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhhHhHHhhhcccCch--HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHH
Q 007910 57 ANVLFLWGAISNFLPIIGASISDSFLGRF--RVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFL 134 (585)
Q Consensus 57 ~~i~~~~~~~~~~~~~~~G~laD~~~Grr--~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (585)
|.+.+.|.+..+.+.-+..++..|. ..| ....+.+++......+..+.. . +-++| .+...-
T Consensus 285 GfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~-~--vsP~k-------------es~~~s 347 (454)
T KOG4332|consen 285 GFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTS-S--VSPSK-------------ESPSES 347 (454)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHh-c--cCCCc-------------CCchHH
Confidence 6788888888888877777776663 222 223344444443333333222 1 11221 133344
Q ss_pred HHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 007910 135 FSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLM 214 (585)
Q Consensus 135 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~ 214 (585)
+++..+.-.+.|.++|.+.-+=++..|. .+|++.++++..-.|+-.-++-..---=..-.+-|..|-++.+..
T Consensus 348 ~i~F~~~E~cvGlfwPSimkmRsqyIPE-------earstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~ 420 (454)
T KOG4332|consen 348 LIGFCLFEACVGLFWPSIMKMRSQYIPE-------EARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFL 420 (454)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHhhCCH-------HHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHH
Confidence 6677777788899999999999999998 889999999999888765543211000000134567888887766
Q ss_pred HHHHHH
Q 007910 215 LFSTVM 220 (585)
Q Consensus 215 ~i~~~~ 220 (585)
.++.+.
T Consensus 421 ~~a~i~ 426 (454)
T KOG4332|consen 421 FVASIL 426 (454)
T ss_pred HHHHHH
Confidence 655443
|
|
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.05 E-value=13 Score=37.79 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhHhHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHH
Q 007910 56 GANVLFLWGAISNFLPIIGASISDSF-LGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFL 134 (585)
Q Consensus 56 ~~~i~~~~~~~~~~~~~~~G~laD~~-~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (585)
.+.+.-+=.+-..+.-+..-.+-||+ +|.|-. +..++.+.++.+.+++. +.++-
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~--~~v~~sa~s~~lVafs~-----------------------s~~~s 118 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIA--LVVLLSALSFFLVAFSN-----------------------SVPMS 118 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHH--HHHHHHhcceEEEEecc-----------------------chhHH
Confidence 34444444455556666777788886 243332 34456666666666665 56677
Q ss_pred HHHHHHHHHhccccccchhhhh
Q 007910 135 FSSFVLMSIGAGGIRPCSLAFG 156 (585)
Q Consensus 135 ~~~~~l~g~g~g~~~~~~~~~~ 156 (585)
+.+..+.+++.|.-.....++-
T Consensus 119 L~GV~~aSissGlGEiTFL~ls 140 (409)
T KOG3880|consen 119 LLGVVFASISSGLGEITFLALS 140 (409)
T ss_pred HhhhhhhhhcCCcceeehhhhh
Confidence 8888888888888776665544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 585 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-12 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 315 bits (809), Expect = e-101
Identities = 102/547 (18%), Positives = 201/547 (36%), Gaps = 64/547 (11%)
Query: 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEG------ANVLFLWGAISNFLP 71
R +P+IIA+EA E+ + G+ + +L+ +S PE +V + F P
Sbjct: 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP 71
Query: 72 IIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQL 131
++G I+D F G++ I + +G L A +
Sbjct: 72 LLGGWIADRFFGKYNTILWLSLIYCVGHAFL----------------------AIFEHSV 109
Query: 132 GFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASI 191
++ L+++G+GGI+P +F DQF +N+ + Q F+ +Y ++ +
Sbjct: 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFD----QSNKSLAQKAFDMFYFTINFGSFFAS 165
Query: 192 TLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKN 251
+ + G V FG+P LM +TV F LG YI GF VI +A
Sbjct: 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLT 225
Query: 252 RHLPLPPTDA-----DRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWK 306
+ + L A V+ + K
Sbjct: 226 KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARK 285
Query: 307 LCTVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSF 365
V+ +++++++L +++ Q + LQA M + + P
Sbjct: 286 SHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQW-----FEPAMM 340
Query: 366 GVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKR 425
L + + + + V+ P + + + L +++G G+AI+ ++ V ++
Sbjct: 341 QALNPLLVMLLIPFNNFVLYPAIERMGVKLTAL---RKMGAGIAITGLSWIVVGTIQLMM 397
Query: 426 RSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVA 485
+ L+ W + L+ E + +EF YSQ PK M ++
Sbjct: 398 DGGSA-------------LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMS 444
Query: 486 LLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYF 545
+L + VGNL L + T + V T ++ + +++ +++ F
Sbjct: 445 FWTLSVTVGNLWVLLANVSVKSPTVTEQ---IVQTGMSVTAFQMFFFA--GFAILAAIVF 499
Query: 546 IACSWAY 552
+ +Y
Sbjct: 500 ALYARSY 506
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 38/236 (16%), Positives = 80/236 (33%), Gaps = 36/236 (15%)
Query: 9 MTKSKKGGL---RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSG----PEGANVLF 61
M K + + E +E+ + G+ A +++Y+ A +
Sbjct: 1 MEDKGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIM 60
Query: 62 -LWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFI 120
++ ++ IG ++D +G + G +LG I+L L
Sbjct: 61 AIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL---------------- 104
Query: 121 EICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYY 180
P LF S +L+ IG G ++P + ++R F+ +
Sbjct: 105 -------PFGASALFGSIILIIIGTGFLKPNVSTLVGTLY-----DEHDRRRDAGFSIFV 152
Query: 181 ASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKV 236
+ L + ++ Q+ AG+ V F + M +++ G + P +
Sbjct: 153 FGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRP 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 58/449 (12%), Positives = 117/449 (26%), Gaps = 134/449 (29%)
Query: 7 QEMTKSKKGGLRTMPFIIANEAFEKVAGVG---LHANMIFYLILEYH-------MSGPEG 56
Q+M KS I++ E + + +F+ +L +
Sbjct: 39 QDMPKS----------ILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 57 ANVLFLWGAIS-----------------NFLPIIGASISDSFLGRFRVI-----AL---- 90
N FL I + L + + R + AL
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 91 -GTFTALLGMILL---WLTAIIPAARPPKCNPFIEI---------CPAAKPRQLGFLFSS 137
+ G++ W+ + + +C +I P L L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 138 FVLMSIGAGGIRPCSLAFGADQFHNPDNPNNE---RILQTFFNWYYASVGLSYMASITLI 194
+ +D N + + + + Y + L+
Sbjct: 209 ID-----------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN---------CLL 248
Query: 195 VY--IQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLF-TGFGQVISA--AW 249
V +Q+ F L K+L T F QV A
Sbjct: 249 VLLNVQNA--KAWN-------------AFNLSC---------KILLTTRFKQVTDFLSAA 284
Query: 250 KNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCT 309
H+ L LT P E L + R ++L + P +L
Sbjct: 285 TTTHISLDHHS-------MT--LT-PDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 310 V-KQVEELKAII---KVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSF 365
+ + + + A K + +I +++ + + +F IP
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--- 389
Query: 366 GVFAILTLTIWVAIYDRVVVPLLSKFTNR 394
+ +++ W + V+ +++K
Sbjct: 390 ILLSLI----WFDVIKSDVMVVVNKLHKY 414
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.98 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.94 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.89 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.85 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.38 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.34 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.25 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.07 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.04 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.72 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.13 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-30 Score=281.70 Aligned_cols=445 Identities=17% Similarity=0.238 Sum_probs=294.4
Q ss_pred cCCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHH-----hCCChhhHHHHHHHHHHHHHHHhhHhHHhhhc-ccCchH
Q 007910 13 KKGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILE-----YHMSGPEGANVLFLWGAISNFLPIIGASISDS-FLGRFR 86 (585)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~Grr~ 86 (585)
.++++|..+.+++..+++.+++|++...++.|+.++ +|++..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 355677888888999999999999999999999998 99999999999999999999999999999999 7 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCC
Q 007910 87 VIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNP 166 (585)
Q Consensus 87 ~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 166 (585)
++..+.++..++.+++.++. +.+.++++|++.|+|.+...++..++++|++|+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~-- 141 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPF-----------------------GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD-- 141 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-----------------------STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT--
T ss_pred HHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc--
Confidence 99999999999998888755 67789999999999999999999999999999821
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccC---CCCC-cchhHH
Q 007910 167 NNERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPK---ANKV-LFTGFG 242 (585)
Q Consensus 167 ~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~-~~~~~~ 242 (585)
+.|++++++++.+.++|..++|.+++++.+..||++.|++.++..+++.++.++..++...++ +... ..++..
T Consensus 142 ---~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
T 4aps_A 142 ---RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218 (491)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHH
T ss_pred ---ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhH
Confidence 347889999999999999999999999999899999999987766666655544433322111 1110 111110
Q ss_pred HHHH--------------HHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCcccc
Q 007910 243 QVIS--------------AAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLC 308 (585)
Q Consensus 243 ~~i~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 308 (585)
+... .....++... ++.........+...... . ...|+..
T Consensus 219 ~~~~~~g~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~----~---~~~~~~~ 272 (491)
T 4aps_A 219 PLLVKVSLAVAGFIAIIVVMNLVGWNSL-------------------PAYINLLTIVAIAIPVFY----F---AWMISSV 272 (491)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHHSSCCT-------------------THHHHHHHHHHHHHHHHH----H---HHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccc-------------------ccchhhhhHHHHHHHHHH----H---HHHhhcc
Confidence 0000 0000000000 000000000000000000 0 0000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcc-cch-hhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhh
Q 007910 309 TVKQVEELKAIIKVLPIWSSGIMIAVTISQ-YTF-PQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVP 386 (585)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 386 (585)
. ....++++......++.....++..+.+ .+. ..+.....+... ...+.....+.+..++..++.+ +
T Consensus 273 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~ 341 (491)
T 4aps_A 273 K-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW------FPVSWFQSLNPLFIMLYTPFFA----W 341 (491)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS------SCSGGGTTHHHHHHHHHHHHHH----H
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc------cCHHHHhccchHHHHHHHHHHH----H
Confidence 0 0011223333344455555666666666 333 222222222211 3456667777778888777754 4
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhh
Q 007910 387 LLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIG 466 (585)
Q Consensus 387 l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~ 466 (585)
+.+|++||+ ......+.+++.+.+++++++...... .+ + ....+..++++.+++.++++++..+.
T Consensus 342 l~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~--~~~~~~~~~~~~~~l~g~~~~~~~~~ 406 (491)
T 4aps_A 342 LWTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGAL-------YG----T--SGKVSPLWLVGSWALVILGEMLISPV 406 (491)
T ss_dssp HHHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHH-------CC----C--CTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHh-------cC----C--CCCccHHHHHHHHHHHHHHHHHHhHH
Confidence 566777663 455667778888888887776654411 00 0 11235566778889999999999999
Q ss_pred hHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 467 QIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFI 546 (585)
Q Consensus 467 ~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~ 546 (585)
.+.++.+.+|++.||+++|+.+...++|+.+++.+.+.+.+ .++...|++++++.+++.++.+
T Consensus 407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~ 469 (491)
T 4aps_A 407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLV 469 (491)
T ss_dssp HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988665432 1245678888888888887777
Q ss_pred HHhcccCcc
Q 007910 547 ACSWAYGSC 555 (585)
Q Consensus 547 ~~~~~~~~~ 555 (585)
...++.+++
T Consensus 470 ~~~~~~~~~ 478 (491)
T 4aps_A 470 FLSKRIQGL 478 (491)
T ss_dssp HC-------
T ss_pred HHHHHHHHH
Confidence 766655443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=285.50 Aligned_cols=482 Identities=20% Similarity=0.311 Sum_probs=286.2
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhC------CChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYH------MSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRV 87 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~ 87 (585)
++++|..+.+++..++..+++|++...++.|+.+++| ++..+.+++.+.+.++..++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3455677788889999999999999999999999999 9999999999999999999999999999993399999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCc
Q 007910 88 IALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPN 167 (585)
Q Consensus 88 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 167 (585)
+.++.++..++.+++.++. .+.+.+++.|++.|++.+...++..++++|.+|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r-- 143 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE----------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK-- 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS----------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT--
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch--
Confidence 9999999999988887643 1567789999999999999999999999999998322
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHH
Q 007910 168 NERILQTFFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISA 247 (585)
Q Consensus 168 ~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 247 (585)
..+...+++++.+.++|..++|.+++++.+..||++.|++.++..++..++.++..++...+++++++..+..+.+..
T Consensus 144 --~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (524)
T 2xut_A 144 --SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRS 221 (524)
T ss_dssp --THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC---------------
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHH
Confidence 233455666999999999999999999998889999999887776666555544444332222222111111111111
Q ss_pred HHhhcCCCCCCCcccccccccCC---CcCCCCchhhhhhhhhhcc--ccccccccCCCCCCCcc-------ccchhhHHH
Q 007910 248 AWKNRHLPLPPTDADRWYYYKGS---KLTAPTEKLRFLNRACVVQ--NREKELDLDGKAIEPWK-------LCTVKQVEE 315 (585)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 315 (585)
..++++...+. ........... ......+....+....+.. ..|. ....+|+ .++.+..++
T Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 294 (524)
T 2xut_A 222 ALLTKVEGKGN-IGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF------VGAGASLQLERARKSHPDAAVDG 294 (524)
T ss_dssp -----CTTHHH-HHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH------HHTGGGTHHHHSCCSCCSSSSTT
T ss_pred HHhhhhcccCc-cchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc------cccchhhHHhhhhccccHhHHHH
Confidence 11111100000 00000000000 0000000000000000000 0000 0000110 000001122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCC
Q 007910 316 LKAIIKVLPIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNR 394 (585)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r 394 (585)
.|+.+....++.....++..+.+ .+.+..+...++... + .+.+.+...+.+..++..++.+++..+..+|.++|
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (524)
T 2xut_A 295 VRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK 369 (524)
T ss_dssp TTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S-SCHHHHHTTSGGGHHHHGGGTTTC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC
Confidence 23344444454455556666666 444344433332211 0 13445556667777888888877666666776655
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 007910 395 PRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQ 474 (585)
Q Consensus 395 ~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~ 474 (585)
.+..+++.+|+.+.+++++.+...... .+.....+.+++++.+++.++++++..+..++++.+.
T Consensus 370 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 433 (524)
T 2xut_A 370 ---LTALRKMGAGIAITGLSWIVVGTIQLM-------------MDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQ 433 (524)
T ss_dssp ----CCHHHHHTHHHHHHHHHHTTTTTTTT-------------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred ---CChHHHHHHHHHHHHHHHHHHHHHHHH-------------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677788888887777665443200 0000123555677788999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccc-CcccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007910 475 FPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVST-NVNRAHYDYYYWILCILSVVNFFYFIACSWAYG 553 (585)
Q Consensus 475 ~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~ 553 (585)
+|++.||+++|+++...++|+.+++.+.+.+.+.++ .+|.+. +.+. ....|++.+++.+++.++++++.++++
T Consensus 434 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 434 APKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp CCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred CcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccccccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999888653221 123211 0111 122377788888888877777766665
Q ss_pred cc
Q 007910 554 SC 555 (585)
Q Consensus 554 ~~ 555 (585)
++
T Consensus 508 ~~ 509 (524)
T 2xut_A 508 MQ 509 (524)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-26 Score=247.54 Aligned_cols=399 Identities=12% Similarity=-0.033 Sum_probs=250.2
Q ss_pred cchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 17 LRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
|+.....++..++..+..+.....++ ++.+++ .+..+.+++.+++.++..++.+++|+++||+ |||++++++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMP-YLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHH-HTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 44455555566666666555555544 445667 9999999999999999999999999999996 99999999999999
Q ss_pred HHHHHHHH----hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhh
Q 007910 97 LGMILLWL----TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERIL 172 (585)
Q Consensus 97 ~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r 172 (585)
++.+++++ +. +++.++++|++.|++.+...+...++++|.+|+ ++|
T Consensus 104 ~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-------~~r 153 (451)
T 1pw4_A 104 AVMLFMGFVPWATS-----------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KER 153 (451)
T ss_dssp HHHHHHHHCHHHHS-----------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THH
T ss_pred HHHHHHHhhhhccc-----------------------cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-------hhh
Confidence 99999988 65 667799999999999999999999999999998 889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhh
Q 007910 173 QTFFNWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKN 251 (585)
Q Consensus 173 ~~~~~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 251 (585)
++++++.+.+.++|..++|.+++++.+..| ||+.|++.+++.++..++.++..++.+......+. ++
T Consensus 154 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------- 221 (451)
T 1pw4_A 154 GGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE----------- 221 (451)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT-----------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh-----------
Confidence 999999999999999999999999888888 99999988776665555444433322111100000 00
Q ss_pred cCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHH-HHHH
Q 007910 252 RHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIW-SSGI 330 (585)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 330 (585)
.+ +. ..++ ..++ .+ ....++....+..-..+.+....... ....
T Consensus 222 ~~----~~------~~~~-----~~~~-----------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (451)
T 1pw4_A 222 YK----ND------YPDD-----YNEK-----------AE---------QELTAKQIFMQYVLPNKLLWYIAIANVFVYL 266 (451)
T ss_dssp TC----CC--------------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hc----cc------cccc-----chhh-----------hh---------cccccccchHHHHHcCHHHHHHHHHHHHHHH
Confidence 00 00 0000 0000 00 00000000000000001221111111 1111
Q ss_pred HHHHhhcccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccc--cCCCCCCCchHHHHHHH
Q 007910 331 MIAVTISQYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKF--TNRPRGLSYRQRIGIGL 408 (585)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~--~~r~~~~~~~~~~~~g~ 408 (585)
.+.......+.+..+..+.+. ...+.+.....+..++...+ ...+.+|+ ++| +.+.++.
T Consensus 267 ~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~----~g~l~~~~~~~~~-------~~~~~~~ 327 (451)
T 1pw4_A 267 LRYGILDWSPTYLKEVKHFAL--------DKSSWAYFLYEYAGIPGTLL----CGWMSDKVFRGNR-------GATGVFF 327 (451)
T ss_dssp HHHHHHHHHHHHBTTBSCCCH--------HHHHHHHHHHHHHHHHHHHH----HHHHHHHTSTTCH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcCCc-------hhHHHHH
Confidence 111111111111111111111 01122333334444444444 34455665 443 5555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHH
Q 007910 409 AISC-VAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL 487 (585)
Q Consensus 409 ~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~ 487 (585)
.+.. ++++.+.... ..+.+......++.+++.....+....++.+..|++.||+++|+.
T Consensus 328 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 387 (451)
T 1pw4_A 328 MTLVTIATIVYWMNP--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFT 387 (451)
T ss_dssp HHHHHHHHHHTTSCC--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHH
Confidence 4444 4443332211 113444566677778888888888889999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 007910 488 SLGMAV-GNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSW 550 (585)
Q Consensus 488 ~~~~~i-g~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~ 550 (585)
+....+ |..+++.+.+.+.+.. ++...|++.+++.+++.++.+...+
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999 9999999998876433 2467788888888887776665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=250.78 Aligned_cols=415 Identities=10% Similarity=0.028 Sum_probs=227.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhH
Q 007910 53 GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLG 132 (585)
Q Consensus 53 ~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (585)
..+.+++.+++.++..++++++|+++||+ |||++++++.+++.++.++++++........+.. ........+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~-----~~~~~~a~~~~ 127 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDN-----TVPVYLAGYVP 127 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS-----SCCGGGGGCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh-----HHHHHHhhhHH
Confidence 45667888999999999999999999996 9999999999999999999986431110000000 00000123788
Q ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc--------cchh
Q 007910 133 FLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQDK--------AGWV 204 (585)
Q Consensus 133 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~~~--------~g~~ 204 (585)
.++++|+++|+|.|+..+..+.+++|..|+ ++|++..++.+.+..+|.++++.++..+... .+||
T Consensus 128 ~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-------~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4gc0_A 128 EFVIYRIIGGIGVGLASMLSPMYIAELAPA-------HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWR 200 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-------GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-------HhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhH
Confidence 999999999999999999999999999999 8999999999999999999998887766543 2466
Q ss_pred HHHHHHHHHHHHHHHHHHHhCcc--ccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhh
Q 007910 205 VGFGVPVGLMLFSTVMFLLGSSL--YIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFL 282 (585)
Q Consensus 205 ~~f~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (585)
+.+.+..+..++.++..+..++. +...+.+. ++..+.+.....+.. . .++..+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~---~~a~~~l~~~~~~~~--------------~------~~~~~~~- 256 (491)
T 4gc0_A 201 YMFASECIPALLFLMLLYTVPESPRWLMSRGKQ---EQAEGILRKIMGNTL--------------A------TQAVQEI- 256 (491)
T ss_dssp HHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCH---HHHHHHHHHHHHHHH--------------H------HHHHHHH-
T ss_pred HHhhhhhhhhhhhhhhhhcCCCChHHHHHcCch---hHHHHhHHHhcCCch--------------h------HHHHHHH-
Confidence 66655554444443333322221 11111111 110111100000000 0 0000000
Q ss_pred hhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhcccccccCCcccccCC
Q 007910 283 NRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTISQYTFPQLQAKSMDRHIFSEKLKIPP 362 (585)
Q Consensus 283 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (585)
.......++. .. .......++........... .+..++. . ...........+. .....
T Consensus 257 -~~~~~~~~~~---------~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~~--~~~~~ 314 (491)
T 4gc0_A 257 -KHSLDHGRKT---------GG-----RLLMFGVGVIVIGVMLSIFQ--QFVGINV--V-LYYAPEVFKTLGA--STDIA 314 (491)
T ss_dssp -HHHHHHHHHH---------TT-----HHHHSCCTHHHHHHHHHHHH--HHTCHHH--H-HHHHHHHHHHSSC--CHHHH
T ss_pred -HHHHHhhhhh---------hh-----HHHHhcccHHHHHHHHHHHH--HHhhhhH--H-HhcchHHHHhcCC--Cccch
Confidence 0000000000 00 00000001111111110000 0000000 0 0000000001110 00001
Q ss_pred CcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccc
Q 007910 363 GSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVV 442 (585)
Q Consensus 363 ~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (585)
........+..++... +...+.+|+||| +.+..+...++++++.++..... .
T Consensus 315 ~~~~~~~~~~~~~~~~----~~~~l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~-----------------~ 366 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTV----LAIMTVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT-----------------Q 366 (491)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT-----------------T
T ss_pred hhHHHHHHHHHHHHHH----HHHHHHHhhcCc-------chhccchHHHHHHHHHHHHHHhc-----------------c
Confidence 1111122222222222 245567788877 66777777777776666544310 0
Q ss_pred cchhhhHHHHHHHHHHHH-HHHhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccC
Q 007910 443 ALTAMWLVPQNCLIGLAE-AFNAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTN 521 (585)
Q Consensus 443 ~~~~~~~i~~~~l~g~g~-~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~ 521 (585)
..++. .+...++...+. ....+..+.+..|.+|.+.|++++|+.+..+++++.+++.+.+.+.... |..
T Consensus 367 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~-- 436 (491)
T 4gc0_A 367 APGIV-ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLV-- 436 (491)
T ss_dssp CCHHH-HHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHH--
T ss_pred cchHH-HHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--
Confidence 11222 222222222222 2334566788889999999999999999999999999998887754221 100
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcccCcccCCcccchhh
Q 007910 522 VNRAHYDYYYWILCILSVVNFFYFIACSWAYGSCEDIKVWDEGE 565 (585)
Q Consensus 522 ~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (585)
...+....|++++++++++.++.+++.+|+|+|+.||.++..+
T Consensus 437 -~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 437 -AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp -HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 0012245688899999999999999999999997666554443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=230.03 Aligned_cols=357 Identities=8% Similarity=0.021 Sum_probs=229.0
Q ss_pred CCCcchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHH
Q 007910 14 KGGLRTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTF 93 (585)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~ 93 (585)
+++++....+++..++..+..+.. ..+..++.+++|++..+.+++.+++.++..++.++.|+++||+ |||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLN-DILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence 334444455555555555555544 4445567889999999999999999999999999999999996 99999999999
Q ss_pred HHHHHHHHH---HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchh
Q 007910 94 TALLGMILL---WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNER 170 (585)
Q Consensus 94 ~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 170 (585)
+.+++.+++ .++. +++.++++|++.|++.+...+...++++|.+|+ +
T Consensus 100 ~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-------~ 149 (438)
T 3o7q_A 100 LYALGAALFWPAAEIM-----------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-------S 149 (438)
T ss_dssp HHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-------T
T ss_pred HHHHHHHHHHhccccc-----------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-------h
Confidence 999999888 5444 788999999999999999999999999999999 8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHh
Q 007910 171 ILQTFFNWYYASVGLSYMASITLIVYIQ-DKAG-------------------------WVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 171 ~r~~~~~~~~~~~~ig~~~g~~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
+|++.+++++.+.++|..++|.+++++. +..+ ||+.|++.+...++..+++++.
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999988 5554 8999977665555444443332
Q ss_pred CccccccCCCCCcchhHHHHHHHHHhhcCCCCCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCC
Q 007910 225 SSLYIKPKANKVLFTGFGQVISAAWKNRHLPLPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEP 304 (585)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 304 (585)
+. ++.++++++ .++ ....+.++ ..+.
T Consensus 230 ~~--p~~~~~~~~-------------------~~~--------------~~~~~~~~---~~~~---------------- 255 (438)
T 3o7q_A 230 KF--PALQSDNHS-------------------DAK--------------QGSFSASL---SRLA---------------- 255 (438)
T ss_dssp CC--CCCTTTCCC-------------------CSS--------------TTSHHHHH---HHHT----------------
T ss_pred cC--Ccccccccc-------------------ccc--------------ccchhhhH---HHHH----------------
Confidence 11 111000000 000 00000000 0000
Q ss_pred ccccchhhHHHHHHHHHHH-HHHHHHHHHHHhhcc-cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhh
Q 007910 305 WKLCTVKQVEELKAIIKVL-PIWSSGIMIAVTISQ-YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDR 382 (585)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 382 (585)
+ + +.+.... ..+............ +.+...+..+.+.. ..+.......+..++..++
T Consensus 256 ----~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~--- 314 (438)
T 3o7q_A 256 ----R-----I-RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAG--------FAANYLTGTMVCFFIGRFT--- 314 (438)
T ss_dssp ----T-----C-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH--------HHHHHHHHHHHHHHHHHHH---
T ss_pred ----h-----C-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchh--------HHHHHHHHHHHHHHHHHHH---
Confidence 0 0 1111111 111111111111111 22201111111111 1122223333334444333
Q ss_pred hhhhccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q 007910 383 VVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAF 462 (585)
Q Consensus 383 ~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~ 462 (585)
..++.+|+++| +.+.++..+.+++++++.... +. +.+...++.+++...
T Consensus 315 -~g~l~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 315 -GTWLISRFAPH-------KVLAAYALIAMALCLISAFAG----------------------GH-VGLIALTLCSAFMSI 363 (438)
T ss_dssp -HHHHHHHSCHH-------HHHHHHHHHHHHHHHHHHHCC----------------------HH-HHHHHHHHHHHHHTT
T ss_pred -HHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHcC----------------------Cc-HHHHHHHHHHHHHHH
Confidence 34556676554 667777776666655544322 22 233445777888888
Q ss_pred HhhhhHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 007910 463 NAIGQIEFYYSQFPKTMSSIGVALLSLGMAVGNLVGSLIVTILNRVTG 510 (585)
Q Consensus 463 ~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~ig~~ig~~l~~~i~~~~~ 510 (585)
..|..+.+..+..|++ ++.+.++.. .+.+++.+++.+.+.+.+..|
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 8999999989999977 899998877 677999999999998876543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=211.52 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHH
Q 007910 22 FIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMIL 101 (585)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~ 101 (585)
.+++..++..+........++. +.+++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHH
Confidence 4455566666666555555554 4678999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHH
Q 007910 102 LWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYA 181 (585)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 181 (585)
..+++ +.+.+++.|++.|++.+...+...+++.|.+|+ ++|++.++..+.
T Consensus 82 ~~~~~-----------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 131 (375)
T 2gfp_A 82 AVTTS-----------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-------TQLRHANSLLNM 131 (375)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSCCSHHHHHHH
T ss_pred HHHhc-----------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-------HHHHHHHHHHHH
Confidence 98876 788899999999999999999999999999998 778899999999
Q ss_pred HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 007910 182 SVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTV 219 (585)
Q Consensus 182 ~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~ 219 (585)
..++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 132 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 132 GILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999877665554433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.7e-22 Score=209.17 Aligned_cols=389 Identities=9% Similarity=-0.013 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLG 98 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g 98 (585)
..+......++..+++..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++.+++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHH
Confidence 344455555666666666778899999989999999999999999999999999999999996 9999999888776553
Q ss_pred HHHH---HHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHH
Q 007910 99 MILL---WLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTF 175 (585)
Q Consensus 99 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 175 (585)
.... .+.... ...++.++.+.+++.+...+...+...+..++ ..++|+..
T Consensus 87 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~~~ 139 (417)
T 2cfq_A 87 FAPFFIFIFGPLL----------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK-----VSRRSNFE 139 (417)
T ss_dssp HHHHHHHTHHHHH----------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH-----HHHHHTCC
T ss_pred HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----hhhhcccc
Confidence 2211 111100 00123445555555555444444444444432 01345556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCC
Q 007910 176 FNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLP 255 (585)
Q Consensus 176 ~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (585)
++..+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++ +++... .
T Consensus 140 ~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------~--- 197 (417)
T 2cfq_A 140 FGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT--------------V--- 197 (417)
T ss_dssp HHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC--------------S---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc--------------c---
Confidence 667667789999999999999876 589999887655433322222111111 100000 0
Q ss_pred CCCCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 007910 256 LPPTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVT 335 (585)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (585)
.+.. + + ..++.+..+...+ ++ + +...............+..
T Consensus 198 -~~~~-------~-~----~~~~~~~~~~~~~--------------------~~-----~-~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 198 -ANAV-------G-A----NHSAFSLKLALEL--------------------FR-----Q-PKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp -SSSS-------S-S----CCCCCCHHHHHHH--------------------TT-----C-HHHHHHHHHHHHHHHHHHH
T ss_pred -cccc-------c-c----ccccccHHHHHHH--------------------hc-----C-CchhhHHHHHHHHHHHHHH
Confidence 0000 0 0 0000000000000 00 0 1111111111111112222
Q ss_pred hcc--cchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHH
Q 007910 336 ISQ--YTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCV 413 (585)
Q Consensus 336 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i 413 (585)
+.+ +.+. .. ..+....+ ....+....++.+..++...+ ..++.||+++| +.+.++..+.++
T Consensus 239 ~~~~~~~~~-~~--~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~----~g~l~dr~g~~-------~~l~~~~~~~~~ 301 (417)
T 2cfq_A 239 FDQQFANFF-TS--FFATGEQG---TRVFGYVTTMGELLNASIMFF----APLIINRIGGK-------NALLLAGTIMSV 301 (417)
T ss_dssp HHHHHHHHH-HH--TSSSHHHH---THHHHHHHHHHHHHHHHHHHH----HHHHHHHHCHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHH-HH--HHhccCCC---hhHHHHHHHHHHHHHHHHHHH----HHHHHHHhcHH-------HHHHHHHHHHHH
Confidence 222 2221 11 11100000 000112222333333333333 45566777665 666667666666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHH-HHHHHH
Q 007910 414 AMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVAL-LSLGMA 492 (585)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~ 492 (585)
+++...... +...+++..++.+++.....+....++.+..|++.||++.++ ++..++
T Consensus 302 ~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 302 RIIGSSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHHTTCC----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHhc----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHh
Confidence 544432211 233344445556666666667778899999999999999998 588888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 007910 493 VGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWA 551 (585)
Q Consensus 493 ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~ 551 (585)
+|+.+++.+.+.+.+.. ++...|.+.+++.+++.++.+...++
T Consensus 360 lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999988765322 24667888888888877765554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-12 Score=134.73 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=148.3
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhccc--CchHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFL--GRFRVIALGTFTA 95 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Grr~~l~~~~~~~ 95 (585)
+..+..++..++..+.++++..+++.|+.+.+|+++.+.+++.....++..++.++.|+++|| + |||+.+.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 445666677778888888889999999988899999999999999999999999999999999 7 9999988777766
Q ss_pred H-HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 96 L-LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 96 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
. ++.+++.+.. ..+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 331 ~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~g~ 382 (451)
T 1pw4_A 331 VTIATIVYWMNP---------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGT 382 (451)
T ss_dssp HHHHHHHTTSCC---------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHH
T ss_pred HHHHHHHHHHhc---------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-------hhhhh
Confidence 6 4544443321 11456677778889999888888889999999999 88999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007910 175 FFNWYYASVGL-SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLG 224 (585)
Q Consensus 175 ~~~~~~~~~~i-g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~ 224 (585)
++++++...++ |..++|.+.+++.+..||+..|++.+++.+++.++.++.
T Consensus 383 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999988877776666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=128.58 Aligned_cols=167 Identities=13% Similarity=0.001 Sum_probs=135.3
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHH-HHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFY-LILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTAL 96 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~ 96 (585)
+..+..++..++....++++..+++.| +++.+|++..+++.+...+.++..++.+++|+++||+ |||+++.++.++.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 445556666677777778888999999 8888899999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 97 LGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 97 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
++.++..+.. +.+. +...++.|++.+...|...++..|.+|+ + ++++.
T Consensus 337 ~~~~~~~~~~-----------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~-~~~~~ 384 (438)
T 3o7q_A 337 ALCLISAFAG-----------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQ-------D-TKYGS 384 (438)
T ss_dssp HHHHHHHHCC-----------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGG-------G-HHHHH
T ss_pred HHHHHHHHcC-----------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhccc-------c-ccchh
Confidence 8877776643 3333 3444788899999999999999999987 4 55656
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-hhHHHHHHHHHHHHHH
Q 007910 177 NWYYASVGLSYMASITLIVYIQDKAG-WVVGFGVPVGLMLFST 218 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~~~g-~~~~f~~~~~~~~i~~ 218 (585)
++.. ...+|..++|.+.+++.+..| ++..|++.+++.++..
T Consensus 385 ~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 385 SFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 6555 567999999999999999888 9999887655544433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-11 Score=127.13 Aligned_cols=165 Identities=10% Similarity=-0.030 Sum_probs=122.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Q 007910 28 AFEKVAGVGLHANMIFYLILEYHMS---GPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWL 104 (585)
Q Consensus 28 ~~~~~~~~~~~~~~~~yl~~~l~~s---~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~ 104 (585)
+.....++.....++.|+.+.++.. ....+.......+...++.+++|+++||+ |||+++..+.++.+++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556788887666532 33446666666777888899999999996 9999999888887776655543
Q ss_pred hhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHH-HHHHH
Q 007910 105 TAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNW-YYASV 183 (585)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~ 183 (585)
.. +.+.+++..++.+++.+...+....++.|.+|+ +.|+++.+. ++...
T Consensus 309 ~~-----------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~~~~~~ 358 (417)
T 2cfq_A 309 AT-----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFK 358 (417)
T ss_dssp CC-----------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCH-------HHHHHHHHHHHTTTH
T ss_pred hc-----------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHHHHH
Confidence 22 445566666677777766667778899999999 899999888 47777
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007910 184 GLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLL 223 (585)
Q Consensus 184 ~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~ 223 (585)
++|..++|.++|++.+..|++..|.+.+++.+++.++.+.
T Consensus 359 ~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 398 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398 (417)
T ss_dssp HHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998888888888777666666555433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.8e-10 Score=120.59 Aligned_cols=184 Identities=10% Similarity=0.007 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHH-----HHHHH
Q 007910 20 MPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIA-----LGTFT 94 (585)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~-----~~~~~ 94 (585)
.+.+++..++....++.....++.|+.+.++.+..+.+.+.....+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44445455555666666777888999888888877888888889999999999999999996 9987655 66666
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhH
Q 007910 95 ALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQT 174 (585)
Q Consensus 95 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 174 (585)
.+++.+++.+...... .....+.+.+++..++.|++.+...+...+++.|.+|+ +.|++
T Consensus 364 ~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-------~~~g~ 422 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG--------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-------AFNSQ 422 (491)
T ss_dssp HHHHHTTTHHHHHHCC--------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-------TCSSS
T ss_pred HHHHHHHHHHHHHhcC--------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-------HHHHH
Confidence 6666665554321100 00012456677788899999999999999999999999 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 175 FFNWYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 175 ~~~~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
+.++++...++|..+++.+.+++.+ .++...|.+.+...++..++.+...+
T Consensus 423 ~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 423 MMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp STHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876 46777777766666655555554444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.4e-09 Score=111.65 Aligned_cols=183 Identities=12% Similarity=0.073 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+.....+...++..+..+........++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence 3344444444444444444444455566777888888888888888889999999999999996 999999999988888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHH-HHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLF-SSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFF 176 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 176 (585)
+.+.+........ .....++ ......+++. ...|....+.+|.+|+ +.|+++.
T Consensus 355 ~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt-------~~R~~~~ 408 (491)
T 4gc0_A 355 GMFSLGTAFYTQA------------------PGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPN-------AIRGKAL 408 (491)
T ss_dssp HHHHHHHHHHTTC------------------CHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCT-------TTHHHHH
T ss_pred HHHHHHHHHhccc------------------chHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCH-------hHHHHHH
Confidence 7776665431111 1222222 2222223333 3346777899999999 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc------ccchhHHHHHHHHHHHHHHHHHHHhCcc
Q 007910 177 NWYYASVGLSYMASITLIVYIQD------KAGWVVGFGVPVGLMLFSTVMFLLGSSL 227 (585)
Q Consensus 177 ~~~~~~~~ig~~~g~~~~~~l~~------~~g~~~~f~~~~~~~~i~~~~~~~~~~~ 227 (585)
++.....++|+.+++.+.+.+.+ ..++...|++.+++.+++.++.++..|+
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PE 465 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPE 465 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999998887766543 2345567777666666666665555554
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=6e-09 Score=107.79 Aligned_cols=162 Identities=10% Similarity=-0.009 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHH-HHH
Q 007910 19 TMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFT-ALL 97 (585)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~-~~~ 97 (585)
..+..++..++....++....+++.|+++.+|.++.+.+.+.....++..++.++.|+++||+ |++ +..+... ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHH
Confidence 344555666777777788888888898888999999999999999999999999999999996 872 2233332 222
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+........ .+ ..+.+.+++..++.|++.+...+...++..|.+| ++|+++.+
T Consensus 277 ~~~~~~~~~-~~------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--------~~~g~~~g 329 (375)
T 2gfp_A 277 GLLMWIPDW-FG------------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--------FLAGTAGA 329 (375)
T ss_dssp SSSSSHHHH-HH------------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--------HHHHHHHH
T ss_pred HHHHHHHhh-hc------------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--------cccchHHH
Confidence 222111110 00 0145566777888999999999999999999986 46899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVP 210 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~ 210 (585)
..+...++|..++|.+.+.+.+..+|+..+.+.
T Consensus 330 ~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 330 LVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 999999999999999999998877787777653
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=87.04 Aligned_cols=119 Identities=19% Similarity=0.139 Sum_probs=87.1
Q ss_pred hhhccccc-cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q 007910 384 VVPLLSKF-TNRPRGLSYRQRIGIGLAISCVAMAVAALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAF 462 (585)
Q Consensus 384 ~~~l~~r~-~~r~~~~~~~~~~~~g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~ 462 (585)
..++.||+ |+| +.+.++..+.+++.+.+.... .+...+++..++.|++.+.
T Consensus 74 ~G~l~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~l~g~~~~~ 125 (524)
T 2xut_A 74 GGWIADRFFGKY-------NTILWLSLIYCVGHAFLAIFE---------------------HSVQGFYTGLFLIALGSGG 125 (524)
T ss_dssp HHHHHTTSSCSH-------HHHHHHHHHHHHHHHHHHHTS---------------------SCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcch-------HHHHHHHHHHHHHHHHHHHhc---------------------ccHHHHHHHHHHHHHhccc
Confidence 45566776 665 777788877777766554321 1445577778899999999
Q ss_pred HhhhhHHHhhhcCCcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHH
Q 007910 463 NAIGQIEFYYSQFPKTMSSIGVAL---LSLGMAVGNLVGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSV 539 (585)
Q Consensus 463 ~~~~~~~~~~~~~P~~~rg~~~g~---~~~~~~ig~~ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~v 539 (585)
..+....++.+.+|++.|++..+. ++...++|..+++.+.+.+.+.. +++..|++.+++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------g~~~~f~~~~~~~~ 189 (524)
T 2xut_A 126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----------------GAAVAFGIPGVLMF 189 (524)
T ss_dssp THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----------------CHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------cHHHHHHHHHHHHH
Confidence 999999999999999999877766 78888889889888876654321 24677887777766
Q ss_pred HHHHHHH
Q 007910 540 VNFFYFI 546 (585)
Q Consensus 540 v~~~~~~ 546 (585)
++++.++
T Consensus 190 ~~~~~~~ 196 (524)
T 2xut_A 190 VATVFFW 196 (524)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.24 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=6.9e-26 Score=238.23 Aligned_cols=160 Identities=13% Similarity=0.055 Sum_probs=136.1
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 007910 39 ANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNP 118 (585)
Q Consensus 39 ~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 118 (585)
+.+..++. ++|+|.++.+++.+++.++..++.+++|+++||+ |||+++.++.++.+++.++++++.....
T Consensus 45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------- 114 (447)
T d1pw4a_ 45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS-------- 114 (447)
T ss_dssp HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS--------
T ss_pred HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh--------
Confidence 44556665 5899999999999999999999999999999997 9999999999999999988877542222
Q ss_pred CcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007910 119 FIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWYYASVGLSYMASITLIVYIQ 198 (585)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~g~~~~~~l~ 198 (585)
+.+.+++.|++.|++.|...+...++++|.+|+ ++|++.+++++.+.++|..++|.+++.+.
T Consensus 115 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i~~~~~~~~~ 176 (447)
T d1pw4a_ 115 -----------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-------KERGGIVSVWNCAHNVGGGIPPLLFLLGM 176 (447)
T ss_dssp -----------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-------THHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHh-------hcccccccccccccchhhhhhhhhhhhHh
Confidence 567899999999999999999999999999999 89999999999999999999999888766
Q ss_pred cc-cchhHHHHHHHHHHHHHHHHHHHhCc
Q 007910 199 DK-AGWVVGFGVPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 199 ~~-~g~~~~f~~~~~~~~i~~~~~~~~~~ 226 (585)
.. .+|++.|++.+.+.++..++.+...+
T Consensus 177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
T d1pw4a_ 177 AWFNDWHAALYMPAFCAILVALFAFAMMR 205 (447)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHhcc
Confidence 54 47999998877766655555554444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=8.4e-23 Score=209.99 Aligned_cols=397 Identities=10% Similarity=-0.003 Sum_probs=230.8
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
|..+.+.+..++..+++....+.++.|+++++|+|+.+.+++.+++.++..++.++.|+++||+ ||||+++++.++..+
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~ 85 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence 3556666677777777777788899999999999999999999999999999999999999997 999999999998888
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
+..+..+..+.+. .....+..+.+.+.+.+...........+..+++ . +++....+
T Consensus 86 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~ 141 (417)
T d1pv7a_ 86 MFAPFFIFIFGPL-------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV----S-RRSNFEFG 141 (417)
T ss_dssp THHHHHHHTHHHH-------------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHH----H-HHHSCCHH
T ss_pred HHHHHHHhhhhhh-------------------HHHHHHHHHHHhhhcccccccchhhcccccccch----h-hhhHHHHH
Confidence 8877776542111 1222334444444444444444443333333321 1 34455566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhCccccccCCCCCcchhHHHHHHHHHhhcCCCCC
Q 007910 178 WYYASVGLSYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFLLGSSLYIKPKANKVLFTGFGQVISAAWKNRHLPLP 257 (585)
Q Consensus 178 ~~~~~~~ig~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 257 (585)
........+..++|.+++.+.+. +|+..+........+..++.++..++.+..+..++.. +...
T Consensus 142 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~--- 205 (417)
T d1pv7a_ 142 RARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAV------------GANH--- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHH------------HSCC---
T ss_pred HHhhhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhhhhh------------hhhc---
Confidence 67777788889999998888774 4555555544444443343333333211111110000 0000
Q ss_pred CCcccccccccCCCcCCCCchhhhhhhhhhccccccccccCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007910 258 PTDADRWYYYKGSKLTAPTEKLRFLNRACVVQNREKELDLDGKAIEPWKLCTVKQVEELKAIIKVLPIWSSGIMIAVTIS 337 (585)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (585)
..+. ..+.. +.....+....................
T Consensus 206 -----------------~~~~--~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (417)
T d1pv7a_ 206 -----------------SAFS--LKLAL-------------------------ELFRQPKLWFLSLYVIGVSCTYDVFDQ 241 (417)
T ss_dssp -----------------CCCC--HHHHH-------------------------HHTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------cccc--ccccc-------------------------cccccccccchhhhhHHHHHHHHhhhc
Confidence 0000 00000 000000000001111111111111111
Q ss_pred ccchhhhhhcccccccCCcccccCCCcccchhHHHHHHHHHHhhhhhhhccccccCCCCCCCchHHHHHHHHHHHHHHHH
Q 007910 338 QYTFPQLQAKSMDRHIFSEKLKIPPGSFGVFAILTLTIWVAIYDRVVVPLLSKFTNRPRGLSYRQRIGIGLAISCVAMAV 417 (585)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~l~~r~~~r~~~~~~~~~~~~g~~l~~i~~~~ 417 (585)
.... . ......... ...... ........+...+...+..++.+|.+++ +.+.++..+.+++.+.
T Consensus 242 ~~~~-~-~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~r~~~~-------~~~~~~~~~~~~~~~~ 305 (417)
T d1pv7a_ 242 QFAN-F-FTSFFATGE------QGTRVF-GYVTTMGELLNASIMFFAPLIINRIGGK-------NALLLAGTIMSVRIIG 305 (417)
T ss_dssp HHHH-H-HTTSSSCHH------HHHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHCHH-------HHHHHHHHHHHHHHHH
T ss_pred cccc-c-ccccccccc------cchhhh-cccccccccccccchhhhhhhhcccccc-------cchhhhHHHHHHhhhc
Confidence 1000 0 000000000 000111 1111122222223233344555565444 7777787777777666
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhhhHHHhhhcCCcchhhHHHHHH-HHHHHHHHH
Q 007910 418 AALVERKRRSAAIREGLADNPEGVVALTAMWLVPQNCLIGLAEAFNAIGQIEFYYSQFPKTMSSIGVALL-SLGMAVGNL 496 (585)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~g~~-~~~~~ig~~ 496 (585)
..... +.+..++..++.+++.+...+....++.+.+|++.||++.|+. ++...+|..
T Consensus 306 ~~~~~----------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 363 (417)
T d1pv7a_ 306 SSFAT----------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363 (417)
T ss_dssp HHTCC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred ccccc----------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence 54432 4556677788889999999999999999999999999999974 577789999
Q ss_pred HHHHHHHHHHhhcCCCCCccccccCcccchhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 007910 497 VGSLIVTILNRVTGSGGKVSWVSTNVNRAHYDYYYWILCILSVVNFFYFIACSWAYG 553 (585)
Q Consensus 497 ig~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~i~vv~~~~~~~~~~~~~ 553 (585)
+++.+.+.+.+..| ++..|++.+++.++..++..+..++.+
T Consensus 364 i~~~~~G~l~~~~g----------------~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 364 FMSVLAGNMYESIG----------------FQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHC----------------HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999988775443 467788888888888877776665443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=8.7e-12 Score=126.40 Aligned_cols=146 Identities=12% Similarity=-0.022 Sum_probs=122.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCcccCCCCCcc
Q 007910 50 HMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALLGMILLWLTAIIPAARPPKCNPFIEICPAAKPR 129 (585)
Q Consensus 50 ~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (585)
+.+....+.......++..++..+.|++.||+ |||+++.++.++..++.++..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 310 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFAT----------------------- 310 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCC-----------------------
T ss_pred ccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhcccccc-----------------------
Confidence 34455667777788888889999999999996 999999999999888888877654
Q ss_pred hhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHHhhcccchhHHHH
Q 007910 130 QLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFNWY-YASVGLSYMASITLIVYIQDKAGWVVGFG 208 (585)
Q Consensus 130 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~ig~~~g~~~~~~l~~~~g~~~~f~ 208 (585)
+.+.+++..++.|++.+...+...+++.|.+|+ +.|++.++.. .....+|..++|.+.|++.+.+||+..|+
T Consensus 311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~ 383 (417)
T d1pv7a_ 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEV-------RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG-------GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Confidence 677788888999999999999999999999999 8999999975 45667999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCc
Q 007910 209 VPVGLMLFSTVMFLLGSS 226 (585)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~ 226 (585)
+.+++.++..++.++..+
T Consensus 384 ~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 384 VLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 877766655555544443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=5e-11 Score=123.22 Aligned_cols=179 Identities=16% Similarity=0.083 Sum_probs=137.9
Q ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHhhHhHHhhhcccCchHHHHHHHHHHHH
Q 007910 18 RTMPFIIANEAFEKVAGVGLHANMIFYLILEYHMSGPEGANVLFLWGAISNFLPIIGASISDSFLGRFRVIALGTFTALL 97 (585)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Grr~~l~~~~~~~~~ 97 (585)
+..+......++.....++...+.+.|+.+.++++..+.+.......+...++.+++|+++||+ +|++..........+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 327 (447)
T d1pw4a_ 249 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL 327 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHHH
T ss_pred chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHHH
Confidence 4455566677777778888889999999999999999999999999999999999999999996 887655544444333
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCcccCCCCCcchhHHHHHHHHHHHHhccccccchhhhhhccCCCCCCCcchhhhhHHHH
Q 007910 98 GMILLWLTAIIPAARPPKCNPFIEICPAAKPRQLGFLFSSFVLMSIGAGGIRPCSLAFGADQFHNPDNPNNERILQTFFN 177 (585)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 177 (585)
........... ...+.+..++..++.|++.++..+....+..|.+|+ +.|+++.+
T Consensus 328 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g 382 (447)
T d1pw4a_ 328 VTIATIVYWMN------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-------KAAGTAAG 382 (447)
T ss_dssp HHHHHHHTTSC------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-------THHHHHHH
T ss_pred HHHHHHHHHhc------------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH-------HHHHHHHH
Confidence 33332221100 112566677777888998888888999999999999 88999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007910 178 WYYASVGL-SYMASITLIVYIQDKAGWVVGFGVPVGLMLFSTVMFL 222 (585)
Q Consensus 178 ~~~~~~~i-g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~i~~~~~~ 222 (585)
+.+...++ |..++|.+.+++.+..||+..|++.+.+.+++.++..
T Consensus 383 ~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 428 (447)
T d1pw4a_ 383 FTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 428 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 98888877 5677899999999999999998877665555544443
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