Citrus Sinensis ID: 007913
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SHH0 | 590 | Cationic amino acid trans | yes | no | 0.991 | 0.983 | 0.722 | 0.0 | |
| O64759 | 569 | Cationic amino acid trans | no | no | 0.945 | 0.971 | 0.626 | 0.0 | |
| Q84MA5 | 594 | Cationic amino acid trans | no | no | 0.967 | 0.952 | 0.531 | 1e-177 | |
| Q9SQZ0 | 584 | Cationic amino acid trans | no | no | 0.940 | 0.941 | 0.385 | 1e-108 | |
| Q9LZ20 | 583 | Cationic amino acid trans | no | no | 0.911 | 0.914 | 0.403 | 1e-107 | |
| Q797A7 | 461 | Uncharacterized amino aci | yes | no | 0.740 | 0.939 | 0.336 | 2e-60 | |
| Q8GYB4 | 609 | Cationic amino acid trans | no | no | 0.755 | 0.725 | 0.296 | 5e-58 | |
| Q8W4K3 | 600 | Cationic amino acid trans | no | no | 0.846 | 0.825 | 0.281 | 3e-56 | |
| Q9ASS7 | 635 | Cationic amino acid trans | no | no | 0.658 | 0.606 | 0.303 | 2e-55 | |
| Q8BLQ7 | 635 | Cationic amino acid trans | yes | no | 0.878 | 0.809 | 0.297 | 2e-55 |
| >sp|Q9SHH0|CAAT8_ARATH Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/584 (72%), Positives = 494/584 (84%), Gaps = 4/584 (0%)
Query: 2 AVETETELET---PLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRS 58
++E +LE+ L + +W KQ FFPE SF++ ++YKSAL T PRL +RL SRS
Sbjct: 5 SMEEAHQLESRSDDLSQRRSYWRWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRS 64
Query: 59 TDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYL 118
+DA EL ++ES+ P+++CLTWWDL WL FGSVVGSG+FVITGQEA+ AGPA+VLSY
Sbjct: 65 SDAYELDAARRESENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYA 124
Query: 119 ASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARS 178
SG+SALLS CY EF VEIPVAGGSFS+LRVELGDF+A+IAAGNILLEA+VGAAGL RS
Sbjct: 125 ISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRS 184
Query: 179 WSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238
WSSYLAS++ N+SD R KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN I+
Sbjct: 185 WSSYLASLVK-NDSDYFRIKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLIT 243
Query: 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298
S+V+ C+IVF+++VGF H KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+
Sbjct: 244 SMVTVCIIVFIVVVGFTHSKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETE 303
Query: 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358
KPSRDIPIGLVGSM MIT VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV
Sbjct: 304 KPSRDIPIGLVGSMSMITVVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVG 363
Query: 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIA 418
+CALKGMTTSLLVGSLGQARYTTQIAR+HMIPPWFALVHPKT TPI ATLLVT LS+II+
Sbjct: 364 ICALKGMTTSLLVGSLGQARYTTQIARSHMIPPWFALVHPKTGTPIYATLLVTILSSIIS 423
Query: 419 LFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGI 478
F+SL +LSSVFSF+TL IFML+A+ALLVRRYY KDVTP+ L+KFL L +++ASSIG+
Sbjct: 424 FFTSLEVLSSVFSFATLFIFMLVAVALLVRRYYVKDVTPEAGLLKFLGFLFLIIASSIGV 483
Query: 479 TAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLI 538
+A WNS +GWI Y VT WF+GTLG+ALLPK RVPK+WGVPLVPWLPS SIAMNLFLI
Sbjct: 484 SALWNSGVKGWIAYTVTGVIWFIGTLGLALLPKYRVPKVWGVPLVPWLPSFSIAMNLFLI 543
Query: 539 GSLGYLAFLRFIICSAVMLVYYLLVGLHATYDVAHQNQEKSNNE 582
GSLGY+AFLRFIIC+ VML+YYL VGLHATYDVAHQ E++ E
Sbjct: 544 GSLGYVAFLRFIICTMVMLLYYLFVGLHATYDVAHQPLEEAKFE 587
|
Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|O64759|CAAT5_ARATH Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/557 (62%), Positives = 443/557 (79%), Gaps = 4/557 (0%)
Query: 21 QWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLT 80
+W+K+ FFPE SF++ SY++AL QT R KNRL SRS D E L+++S+ +++CLT
Sbjct: 10 RWSKRDFFPEESFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSEHEMKRCLT 69
Query: 81 WWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV 140
WWDL W FGSV+G+GIFV+TGQEA + AGPAIVLSY+ SGLSA+LS FCYTEFAVEIPV
Sbjct: 70 WWDLVWFGFGSVIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYTEFAVEIPV 129
Query: 141 AGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD 200
AGGSF++LR+ELGDF A+I AGNILLE++VG A +AR+W+SY A++++ + + LR K D
Sbjct: 130 AGGSFAYLRIELGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLN-RSPNALRIKTD 188
Query: 201 CFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTT 260
+ GFNLLDP+AV+++ IA TR++S LNWI+S +++ VI FVII GF+H T+
Sbjct: 189 -LSSGFNLLDPIAVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAGFIHADTS 247
Query: 261 NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYC 320
NL PFLP+G EGVF AAAVVY++Y GFD +ATMAEETK PSRDIPIGL+GSM +IT +YC
Sbjct: 248 NLTPFLPFGPEGVFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMSIITVIYC 307
Query: 321 LMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380
LMAL+L+MM KYT+ID NAAYS+AF+ +GM W KYLV++ ALKGMTT LLVG+LGQARY
Sbjct: 308 LMALSLSMMQKYTDIDPNAAYSVAFQSVGMKWGKYLVALGALKGMTTVLLVGALGQARYV 367
Query: 381 TQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFML 440
T IAR HMIPP FALVHPKT TPINA LLV SA+IA FS L++L+S+ S STL IF +
Sbjct: 368 THIARTHMIPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSISTLFIFTM 427
Query: 441 MAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRG-WIGYVVTIAPW 499
M IALLVRRYY + TP+ +L+K + CL VV SS+G +A+W +G WIGY VT+ W
Sbjct: 428 MPIALLVRRYYVRQDTPRVHLIKLITCLLFVVVSSMGTSAYWGMQRKGSWIGYTVTVPFW 487
Query: 500 FLGTLGMA-LLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLV 558
FLGTLG+ +P+QR PK+WGVPLVPWLP LSIA N+FL+GSLG +AF+RF +C+ ML+
Sbjct: 488 FLGTLGIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFGVCTLAMLL 547
Query: 559 YYLLVGLHATYDVAHQN 575
YY L+GLHAT+D+AHQ
Sbjct: 548 YYFLLGLHATFDMAHQQ 564
|
High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, and, to a lower extent, citrulline and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84MA5|CAAT1_ARATH Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 622 bits (1603), Expect = e-177, Method: Compositional matrix adjust.
Identities = 306/576 (53%), Positives = 407/576 (70%), Gaps = 10/576 (1%)
Query: 14 RGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQ 73
RG SC K F PE SF++ +Y ALK+T R +R+ +RS D+ E+ ++ S
Sbjct: 13 RGCSC----TKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEINEMKARSGH 68
Query: 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTE 133
++K LTWWDL W G+V+GSGIFV+TG EA+ H+GPA+VLSY+ SG+SA+LS FCYTE
Sbjct: 69 EMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAMLSVFCYTE 128
Query: 134 FAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSD 193
FAVEIPVAGGSF++LRVELGDF+A+IAAGNI+LE VVG A +ARSW+SY A++++ D
Sbjct: 129 FAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFATLLNHKPED 188
Query: 194 LLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVG 253
R V + ++ LDP+AV + + +A+ GT+ SS N+I+SI+ VI+FVII G
Sbjct: 189 F-RIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVILFVIIAG 247
Query: 254 FVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313
F N F PYG GVF++AAV++++Y GFD V+TMAEETK P RDIPIGLVGSM
Sbjct: 248 FTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMV 307
Query: 314 MITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGS 373
+ T YCLMA+ L +M Y +ID +A +S+AF +G +WAKY+V+ ALKGMTT LLVG+
Sbjct: 308 VTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMTTVLLVGA 367
Query: 374 LGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFS 433
+GQARY T IARAHM+PPW A V+ KT TPINAT+++ +A+IA F+ L IL+ + S S
Sbjct: 368 IGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKILADLLSVS 427
Query: 434 TLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYV 493
TL IFM +A+ALLVRRYY T + KFLV L +++ASS +W GWIGY
Sbjct: 428 TLFIFMFVAVALLVRRYYVTGETSTRDRNKFLVFLGLILASSTATAVYWALEEEGWIGYC 487
Query: 494 VTIAPWFLGTLGMA-LLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIIC 552
+T+ WFL T+ M L+P+ R PK+WGVPLVPWLPS SIA+N+FL+GS+ +F+RF I
Sbjct: 488 ITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKSFVRFAIW 547
Query: 553 SAVMLVYYLLVGLHATYDVA----HQNQEKSNNEEG 584
+ ++L+YY+L GLHATYD A + Q EEG
Sbjct: 548 TGILLIYYVLFGLHATYDTAKATLKEKQALQKAEEG 583
|
High-affinity permease involved in the transport of the cationic amino acids (e.g. arginine, lysine, histidine, citrulline, valine, and glutamate). Transport mostly basic amino-acids, and, to a lower extent neutral and acidic amino-acids. May function as a proton symporter. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SQZ0|CAAT7_ARATH Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 219/568 (38%), Positives = 344/568 (60%), Gaps = 18/568 (3%)
Query: 30 EPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCF 89
+ SF + Y ++L T R R S ST E+ ++ S + +++ L W+DL L
Sbjct: 11 DTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDLIGLGI 70
Query: 90 GSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149
G ++G+G+FV TG+ ++ +AGP+IV+SY +GL ALLSAFCYTEFAV +PVAGG+FS++R
Sbjct: 71 GGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIR 130
Query: 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLL 209
+ G+F A+I N++++ V+ A ++R +++YL S + S+ RF V +GFN +
Sbjct: 131 ITFGEFPAFITGANLIMDYVLSNAAVSRGFTAYLGSAFGISTSE-WRFIVSGLPNGFNEI 189
Query: 210 DPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL----DP- 264
DP+AV+++L + TR SS +N + + + IVFVI++GF G NL +P
Sbjct: 190 DPIAVIVVLAVTFVICYSTRESSKVNMVLTALHIAFIVFVIVMGFSKGDVKNLTRPDNPE 249
Query: 265 ----FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYC 320
F P+G GVF AA+VY SY G+D V+TMAEE K P +DIP+G+ GS+ ++ +YC
Sbjct: 250 NPSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVIVLYC 309
Query: 321 LMALALTMMVKYTEIDMNAAYSIAF-RQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARY 379
LMA++++M++ Y ID A YS AF + G W +V + A G+ TSL+V LGQARY
Sbjct: 310 LMAISMSMLLPYDLIDAEAPYSAAFSKSEGWEWVTRVVGIGASFGILTSLIVAMLGQARY 369
Query: 380 TTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFM 439
I R+ ++P WFA VHPKT TP+NA+ + +A++ALF+ LN+L ++ S TL +F
Sbjct: 370 MCVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAVLALFTDLNVLLNLVSIGTLFVFY 429
Query: 440 LMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRG----WIGYVVT 495
++A A++ RRY T + FL ++ +SI T W G +I T
Sbjct: 430 MVANAVIFRRYVTVGYTEPWPTLSFLCLFSI---TSILFTLVWQLAPSGPPKWFILGAST 486
Query: 496 IAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAV 555
+ + + ++P+ R+P+ WGVPL+PW P +SI +N+FL+GSL +++RF S +
Sbjct: 487 VTAIAIVQIFHCVVPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRFGFFSGL 546
Query: 556 MLVYYLLVGLHATYDVAHQNQEKSNNEE 583
+++ Y+ +HA+YD + E
Sbjct: 547 VVLVYVFYSVHASYDAEGDGSLDFKDVE 574
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZ20|CAAT6_ARATH Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 389 bits (1000), Expect = e-107, Method: Compositional matrix adjust.
Identities = 223/553 (40%), Positives = 339/553 (61%), Gaps = 20/553 (3%)
Query: 33 FENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSV 92
F + Y ++L T RL R S ST + E+ ++ S + +++ L W+DL L G +
Sbjct: 15 FSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGGM 74
Query: 93 VGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152
VG+G+FV TG+ ++ AGP+IV+SY +GL ALLSAFCYTEFAV +PVAGG+FS++R+
Sbjct: 75 VGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRITF 134
Query: 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPV 212
G+F A+ N++++ V+ A ++RS+++YL + + S RF V GFN +DPV
Sbjct: 135 GEFPAFFTGANLVMDYVMSNAAVSRSFTAYLGTAFGISTSK-WRFVVSGLPKGFNEIDPV 193
Query: 213 AVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL----DP---- 264
AVL++LV I TR SS +N I + I FVI++GF+ G + NL +P
Sbjct: 194 AVLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHPS 253
Query: 265 -FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMA 323
F P+G GVF AA+VY SY G+D V+TMAEE + P +DIP+G+ GS+ ++T +YCLMA
Sbjct: 254 GFFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLMA 313
Query: 324 LALTMMVKYTEIDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382
++++M++ Y ID A +S AFR G W +V + A G+ TSLLV LGQARY
Sbjct: 314 VSMSMLLPYDLIDPEAPFSAAFRGSNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMCV 373
Query: 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMA 442
I R+ ++P WFA +HPKT TP+NA+ + +A +ALF+ LN+L ++ S TL +F ++A
Sbjct: 374 IGRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMVA 433
Query: 443 IALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRG-----WIGYVVTIA 497
AL+ RRY T + FL ++ +S+ T W G +G +A
Sbjct: 434 NALIFRRYVPVGPTKPWPTLCFLTLFSI---TSLVFTLIWKLVPEGKPKAFMLGASAVVA 490
Query: 498 PWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVML 557
+ + ++P+ R P+LWGVP +PW P +SI +N+FL+GSL +++RF S +++
Sbjct: 491 IAIVLSF-QCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLIV 549
Query: 558 VYYLLVGLHATYD 570
+ YL G+HA+ D
Sbjct: 550 LVYLFYGVHASSD 562
|
Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q797A7|YFNA_BACSU Uncharacterized amino acid permease YfnA OS=Bacillus subtilis (strain 168) GN=yfnA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (596), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 150/446 (33%), Positives = 260/446 (58%), Gaps = 13/446 (2%)
Query: 63 ELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGL 122
E ++ Q +SK L + L+ +DLT L G V+G+GIFVITG A AGPA+++S++ +GL
Sbjct: 11 ETLSAQSKSKS-LARTLSAFDLTLLGIGCVIGTGIFVITGTVAATGAGPALIISFILAGL 69
Query: 123 SALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSY 182
+ L+AFCY EF+ IP++G +S+ V LG+ +A++ +++LE V+ + +A WSSY
Sbjct: 70 ACALAAFCYAEFSSSIPISGSVYSYSYVTLGELLAFLIGWDLMLEYVIALSAVATGWSSY 129
Query: 183 LASMIDSNNSDL---LRFKVDCFADG-FNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238
S++ N + L A FNL P AV+ILL+ I G + S+ N +
Sbjct: 130 FQSLLAGFNLHIPAALTGAPGSMAGAVFNL--PAAVIILLI-TAIVSRGVKESTRFNNVI 186
Query: 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298
++ +I+ IIVG + K N PF+P+G +GV +AA V+++Y GFD V+ +EE K
Sbjct: 187 VLMKIAIILLFIIVGIGYVKPDNWSPFMPFGMKGVILSAATVFFAYLGFDAVSNASEEVK 246
Query: 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358
P +++P+G++ ++ + T +Y ++L LT M+ Y ++++ S A + +G + ++S
Sbjct: 247 NPQKNMPVGIISALAVCTVLYIAVSLVLTGMMPYAKLNVGDPVSFALKFVGQDAVAGIIS 306
Query: 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIA 418
V A+ G+TT +L Q R T ++R ++P FA VHP +TP T L ++A IA
Sbjct: 307 VGAIIGITTVMLALLYAQVRLTFAMSRDGLLPGLFAKVHPSFKTPFRNTWLTGIVAAGIA 366
Query: 419 LFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGI 478
F +L L+ + + TL+ F +++IA++V R ++ K + V + ++++ I +
Sbjct: 367 GFINLGTLAHLVNMGTLAAFTVISIAVIVLRKKHPEI--KASFRVPFVPVVPIISAGICL 424
Query: 479 TAFWNSNGRGWIGYVVTIAPWFLGTL 504
++ G W+ +V+ IA +GTL
Sbjct: 425 WFMYSLPGVTWLSFVIWIA---VGTL 447
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 142/479 (29%), Positives = 254/479 (53%), Gaps = 37/479 (7%)
Query: 50 LKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHA 109
++ + F S E Q L K LT+ L + GS +G+G++++ G A++H+
Sbjct: 8 VRRKQFDSSNGKAE----THHHHQQLAKALTFPHLIAIGVGSTIGAGVYILVGTVAREHS 63
Query: 110 GPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAV 169
GPA+ LS+L +G+SA LSAFCY E + P AG ++ + + +G+ VA++ ++LE
Sbjct: 64 GPALALSFLIAGISAALSAFCYAELSSRFPSAGSAYHYSYICIGEGVAWLIGWALILEYT 123
Query: 170 VGAAGLARSWSSYLASMIDSNN---SDLLRFKVDCFADGFNLL-DPVAVLILLVCNGIAM 225
+G + +AR S LA + + + L R ++ G +++ DP A +++ + G+
Sbjct: 124 IGGSTVARGISPNLAMIFGGEDCLPTILARHQIP----GLDIVVDPCAAVLVFIVTGLCC 179
Query: 226 SGTRRSSWLNWISSIVSSCVIVFVIIVG----FVHGKTTNLDP--FLPYGTEGVFEAAAV 279
G + S++ I + + V++FVI+ G F G P + PYG +G+ +A
Sbjct: 180 LGVKESTFAQGIVTTANVFVMIFVIVAGSYLCFKTGWVGYELPTGYFPYGVDGMLTGSAT 239
Query: 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNA 339
V+++Y GFD VA+MAEE K P RD+P+G+ S+ + +Y ++++ + +V Y +D +
Sbjct: 240 VFFAYIGFDTVASMAEEVKNPRRDLPLGIGISLLLCCLLYMMVSVVIVGLVPYYAMDPDT 299
Query: 340 AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPK 399
S AF G+ WA YL+++ A+ + ++L+ L Q R +AR ++P +F+ V+ +
Sbjct: 300 PISSAFSSHGIQWAAYLINLGAVMALCSALMGSILPQPRILMAMARDGLLPSYFSYVNQR 359
Query: 400 TQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKN 459
TQ PIN T+ +AI+A F ++ L+ + S TL F ++AI+LL+ RY V P +
Sbjct: 360 TQVPINGTITTGVCAAILAFFMDVSQLAGMVSVGTLVAFTMVAISLLIVRY----VVPPD 415
Query: 460 NLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLW 518
V + SS+ N +G + LG + +++ K+ P W
Sbjct: 416 E---------VPLPSSL------QENSSSHVGTSIRSKQPLLGKVDDSVVDKENAPGSW 459
|
Permease involved in the transport of the cationic neutral or acidic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 159/565 (28%), Positives = 276/565 (48%), Gaps = 70/565 (12%)
Query: 52 NRLFSR-STDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAG 110
N L R D+ LI + + L K L+ DL + G+ +G+G++++ G A++H G
Sbjct: 2 NSLVRRKQVDSVHLI--KNDGPHQLAKKLSAVDLVAIGVGTTIGAGVYILVGTVAREHTG 59
Query: 111 PAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVV 170
PA+ +S+ +G++A LSA CY E A P AG ++ + + LG+ +A++ ++L+ +
Sbjct: 60 PALAVSFFIAGVAAALSACCYAELASRCPSAGSAYHYAYICLGEGIAWLVGWALVLDYTI 119
Query: 171 GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLL-DPVAVLILLVCNGIAMSGTR 229
G + +AR + LAS + +L F G ++ DP A L++++ + G +
Sbjct: 120 GGSAIARGITPNLASFFGGLD-NLPVFLARQTIPGVGIVVDPCAALLIMIVTILLCFGIK 178
Query: 230 RSSWLNWISSIVSSCVIVFVIIVG-FVHGKT--TNLD---PFLPYGTEGVFEAAAVVYWS 283
SS + I + V+ C +VF+I+VG ++ KT D + P+G G+ +AVV++S
Sbjct: 179 ESSTVQAIVTSVNVCTLVFIIVVGGYLACKTGWVGYDLPSGYFPFGLNGILAGSAVVFFS 238
Query: 284 YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI 343
Y GFD V + AEE K P RD+P+G+ ++ + +Y L+++ + +V Y ++ + S
Sbjct: 239 YIGFDTVTSTAEEVKNPQRDLPLGIGIALLICCILYMLLSVVIVGLVPYYSLNPDTPISS 298
Query: 344 AFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTP 403
AF GM WA Y+++ A+ + SLL L Q R +AR ++P +F+ + P+TQ P
Sbjct: 299 AFGDSGMQWAAYILTTGAITALCASLLGSLLAQPRIFMAMARDGLLPAFFSEISPRTQVP 358
Query: 404 INATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP------ 457
+ +T+ + L+A +A F + LS + S TL F +A+ +LV RY D P
Sbjct: 359 VKSTIAIGVLAAALAFFMDVAQLSEMVSVGTLMAFTAVAVCVLVLRYVPPDGVPLSSSSQ 418
Query: 458 --------KNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPW-----FLGTL 504
+ FLV + +S + + + G IA W +G L
Sbjct: 419 TLSDTDESRAETENFLV--DAIESSDSPLLGNETARDEKYFGKRRKIAAWSIALVCIGVL 476
Query: 505 GMA-LLPKQRVPK-----LWGV--------------------------------PLVPWL 526
G+A +R+P + GV P VP+L
Sbjct: 477 GLASAASAERLPSFPRFTICGVSAVILLGSLITLGYIDEDEERHNFGHKGGFLCPFVPYL 536
Query: 527 PSLSIAMNLFLIGSLGYLAFLRFII 551
P L I +N +LI ++G ++R +I
Sbjct: 537 PVLCILINTYLIINIGAGTWIRVLI 561
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/399 (30%), Positives = 226/399 (56%), Gaps = 14/399 (3%)
Query: 69 QESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSA 128
Q L + LT L + G+ +G+G++++ G A++H+GP++ LS+L +G++A LSA
Sbjct: 34 QSHGHQLARALTVPHLVAIGVGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSA 93
Query: 129 FCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188
FCY E + P AG ++ + + +G+ VA+I ++LE +G + +AR S LA +
Sbjct: 94 FCYAELSSRCPSAGSAYHYSYICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFG 153
Query: 189 SNN---SDLLRFKVDCFADGFNLL-DPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSC 244
+ + L R ++ G +++ DP A +++ V G+ G + S++ I + V+ C
Sbjct: 154 GEDGLPAILARHQIP----GLDIVVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVC 209
Query: 245 VIVFVIIVGFVHGKTTN------LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298
V++FVI+ G G T F P+G +G+F +A V++++ GFD VA+ AEE +
Sbjct: 210 VLLFVIVAGSYLGFKTGWPGYELPTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVR 269
Query: 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358
P RD+PIG+ ++ + ++Y ++++ + ++ Y +D + S AF M WA YL++
Sbjct: 270 NPQRDLPIGIGLALLLCCSLYMMVSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLIT 329
Query: 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIA 418
+ A+ + ++L+ L Q R +AR ++P F+ ++ +TQ P+ AT+ +A +A
Sbjct: 330 LGAVMALCSALMGALLPQPRILMAMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLA 389
Query: 419 LFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457
F ++ L+ + S TL F ++AI++L+ RY D P
Sbjct: 390 FFMDVSQLAGMVSVGTLLAFTMVAISVLILRYVPPDEQP 428
|
Permease involved in the transport of the cationic amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8BLQ7|CTR4_MOUSE Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 175/589 (29%), Positives = 291/589 (49%), Gaps = 75/589 (12%)
Query: 62 TELITLQQESKQ-PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLAS 120
L L++ S + L++CL+ DLT L G +VGSG++V+TG AK AGPA++LS+L +
Sbjct: 19 NRLKPLEESSMETSLRRCLSTLDLTLLGVGGMVGSGLYVLTGTVAKDMAGPAVLLSFLVA 78
Query: 121 GLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWS 180
+++LL+A CY EF +P G ++ F V +G+ A++ N+LLE ++G A +AR+WS
Sbjct: 79 AVASLLAALCYAEFGARVPRTGSAYLFTYVSMGEIWAFLIGWNVLLEYLIGGAAVARAWS 138
Query: 181 SYLASMIDSNNSDLLRFKVDCFADGF--NLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238
YL ++ + + + + + F + D +A ILLV + G R SSWLN
Sbjct: 139 GYLDAIFNHSIRNFTESHLGVWQVPFLAHYPDFLAAGILLVASAFVSCGARVSSWLNHTF 198
Query: 239 SIVSSCVIVFVIIVGFV----HGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294
S +S VI+F+I++GF+ H + F P+G G+ A ++++ GFD++A +
Sbjct: 199 SAISLIVILFIIVLGFILARPHNWSAEEGGFAPFGFSGILAGTATCFYAFVGFDVIAASS 258
Query: 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAK 354
EE K P +P+ + S+ + Y L++ LT+MV + +D ++A + AF + G +WA
Sbjct: 259 EEAKNPRWAVPMAIAISLSLAAGAYILVSTVLTLMVPWHSLDPDSALADAFYRRGYSWAG 318
Query: 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLS 414
++V+V ++ M T LL R +A + FA VHP+TQ P+ L+ L
Sbjct: 319 FIVAVGSICAMNTVLLSNLFSLPRIVYAMAADGLFFQVFARVHPRTQVPVVGILVFGVLM 378
Query: 415 AIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKD-------VTPKNNLVKF--- 464
A++AL L L S TL + +A +++V R+ + +P K+
Sbjct: 379 ALLALLLDLEALVQFLSIGTLLAYTFVATSIIVLRFQKASPPSSPCLASPGPTAKKYDSF 438
Query: 465 -----LV-----------------------------------CLTVVVASSIGITA---F 481
LV L ++VAS+I + F
Sbjct: 439 SDHIQLVGAEQTSMSEPGQLRPALKPFLGFLDGCSPGTAVAWALGILVASAISLACVLVF 498
Query: 482 WNSNGR----GWIGYVVTIAPWFLGTL-GMALLPKQRVPKLWGVPLVPWLPSLSIAMNLF 536
NS+ G++ +V FL +L + +Q+ + +PLVP P+LSI +N
Sbjct: 499 GNSDLHLPQWGYVLLLVISGAVFLSSLLVLGAHQQQKKQDTFQIPLVPLTPALSILLNTC 558
Query: 537 LIGSLGYLAFLRFIICSAVMLVYYLLVGL--HATYDVAHQNQEKSNNEE 583
L+ L YL +LRFI ++LLVGL + Y + H + + E
Sbjct: 559 LMLKLSYLTWLRFI--------FWLLVGLVVYFGYGIWHSKENQREPLE 599
|
Involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| 255555517 | 575 | cationic amino acid transporter, putativ | 0.974 | 0.991 | 0.768 | 0.0 | |
| 224061339 | 577 | cationic amino acid transporter [Populus | 0.960 | 0.974 | 0.740 | 0.0 | |
| 297844646 | 585 | hypothetical protein ARALYDRAFT_471910 [ | 0.989 | 0.989 | 0.729 | 0.0 | |
| 449439077 | 594 | PREDICTED: cationic amino acid transport | 0.969 | 0.954 | 0.701 | 0.0 | |
| 449515788 | 630 | PREDICTED: cationic amino acid transport | 0.969 | 0.9 | 0.701 | 0.0 | |
| 15220035 | 590 | cationic amino acid transporter 8 [Arabi | 0.991 | 0.983 | 0.722 | 0.0 | |
| 225423859 | 571 | PREDICTED: uncharacterized amino acid pe | 0.969 | 0.992 | 0.723 | 0.0 | |
| 297737874 | 885 | unnamed protein product [Vitis vinifera] | 0.955 | 0.631 | 0.725 | 0.0 | |
| 356532335 | 592 | PREDICTED: uncharacterized amino acid pe | 0.962 | 0.951 | 0.699 | 0.0 | |
| 147860151 | 552 | hypothetical protein VITISV_020011 [Viti | 0.936 | 0.992 | 0.695 | 0.0 |
| >gi|255555517|ref|XP_002518795.1| cationic amino acid transporter, putative [Ricinus communis] gi|223542176|gb|EEF43720.1| cationic amino acid transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/574 (76%), Positives = 508/574 (88%), Gaps = 4/574 (0%)
Query: 10 ETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQ 69
+ P++ S W +W KQ FFPEP+F+N ++Y AL QTYPRLK+RL SRS++ EL+TLQ+
Sbjct: 5 DQPIK--SYW-RWRKQDFFPEPTFQNLSTYTCALSQTYPRLKDRLLSRSSETNELVTLQK 61
Query: 70 ESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAF 129
ES+ PL+KCLTWWDL WL FGSVVGSGIFVITGQEA+ +GPAI+LSY SGLSALLS F
Sbjct: 62 ESENPLRKCLTWWDLMWLSFGSVVGSGIFVITGQEARV-SGPAILLSYAISGLSALLSVF 120
Query: 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDS 189
CYTEFAVEIPVAGGSFS+LR+ELGDF+A++AAGNILLE VVGAAGL RSWSSY ASMI++
Sbjct: 121 CYTEFAVEIPVAGGSFSYLRIELGDFIAFLAAGNILLEGVVGAAGLGRSWSSYFASMINT 180
Query: 190 NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFV 249
NSD LR ++D F DGFNLLDP+AV++LLV N IAM+GT+R+S LNW+SS+V++C+IVF+
Sbjct: 181 KNSDFLRIRIDSFPDGFNLLDPIAVVVLLVANTIAMTGTKRTSTLNWLSSVVTACIIVFI 240
Query: 250 IIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309
I+VG VHGK++NL PF P G +GVFEAAAVVYWSYTGFDMVATMAEET+KPSRDIPIGLV
Sbjct: 241 IVVGLVHGKSSNLVPFFPSGPKGVFEAAAVVYWSYTGFDMVATMAEETEKPSRDIPIGLV 300
Query: 310 GSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSL 369
GSM MIT VYCLMALALT+MVKYTEI+ +AAYS+AF QIGMNWAKYLVS+CALKGMTTSL
Sbjct: 301 GSMSMITVVYCLMALALTIMVKYTEINADAAYSVAFAQIGMNWAKYLVSICALKGMTTSL 360
Query: 370 LVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSV 429
LVGSLGQ RYTTQIAR+HMIPPWFALVHPKT TPINATLLVT LSAIIA FSSL++LSSV
Sbjct: 361 LVGSLGQGRYTTQIARSHMIPPWFALVHPKTGTPINATLLVTILSAIIAFFSSLDVLSSV 420
Query: 430 FSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGW 489
FSFSTL IFMLMA+ALLVRRYY KDVT K NLVKFL CL +++ SSIG+T W+ NGRGW
Sbjct: 421 FSFSTLLIFMLMAVALLVRRYYVKDVTSKKNLVKFLACLFIIIGSSIGVTTIWSLNGRGW 480
Query: 490 IGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRF 549
IGYVVT WFLGTLGMALLPKQ VP++WGVPLVPWLPSLSIAMNLFLIGSLG +AF RF
Sbjct: 481 IGYVVTSVLWFLGTLGMALLPKQHVPRVWGVPLVPWLPSLSIAMNLFLIGSLGVVAFWRF 540
Query: 550 IICSAVMLVYYLLVGLHATYDVAHQNQEKSNNEE 583
IICSAVM++YYL VG+HATYD+AHQNQE++ E
Sbjct: 541 IICSAVMILYYLFVGVHATYDLAHQNQEETKIES 574
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061339|ref|XP_002300432.1| cationic amino acid transporter [Populus trichocarpa] gi|222847690|gb|EEE85237.1| cationic amino acid transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/562 (74%), Positives = 487/562 (86%)
Query: 23 NKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWW 82
+KQ FFPEPSF++ +SY++AL Q PRLK+RL SRST+ EL+TL++ES+ P+QKCLTWW
Sbjct: 15 SKQDFFPEPSFKDLSSYRTALSQICPRLKDRLLSRSTETHELVTLRRESENPMQKCLTWW 74
Query: 83 DLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAG 142
DL W+ FGSVVGSGIFVITGQEA+ +AGPAIVLSY SG SALLS FCYTEFAVEIPVAG
Sbjct: 75 DLMWMSFGSVVGSGIFVITGQEARDNAGPAIVLSYALSGFSALLSVFCYTEFAVEIPVAG 134
Query: 143 GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCF 202
GSFS+LRVELGDF+AY+AAGNILLEA++GAAGL RSWSSY ASMI+S N D +R K+D F
Sbjct: 135 GSFSYLRVELGDFIAYLAAGNILLEAIIGAAGLGRSWSSYFASMINSKNPDFMRIKIDSF 194
Query: 203 ADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL 262
ADGFNLLDP+AV++LLV N IAMSGT+R+S+LNWI+SI ++ +I F+I+VGF+H K++NL
Sbjct: 195 ADGFNLLDPLAVVVLLVANSIAMSGTKRTSFLNWIASIATAFIIAFIIVVGFIHFKSSNL 254
Query: 263 DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLM 322
P+ P G EGVF +AAVVYW+YTGFDMVATMAEETK PSRDIPIGLVGSM +IT +YCLM
Sbjct: 255 VPYFPKGAEGVFVSAAVVYWAYTGFDMVATMAEETKNPSRDIPIGLVGSMSIITVIYCLM 314
Query: 323 ALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382
A+ALT MVKYTEID NAA+S+AF QIGMNWA YLVS+CALKGMTTSL+VGSLGQ RYTTQ
Sbjct: 315 AMALTGMVKYTEIDPNAAFSVAFAQIGMNWATYLVSICALKGMTTSLMVGSLGQGRYTTQ 374
Query: 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMA 442
IAR+HMIPPWFA VHPKT TPINATLL T LSAI+A FSSL++LSSVFS TL IFML+A
Sbjct: 375 IARSHMIPPWFARVHPKTGTPINATLLTTILSAIVAFFSSLDVLSSVFSICTLLIFMLLA 434
Query: 443 IALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLG 502
+ALLVRRYY KDVT KN+ V F V L +V SSIG+TA WNS RGWIGYVV W G
Sbjct: 435 VALLVRRYYVKDVTSKNDSVTFFVSLFTIVGSSIGVTALWNSGVRGWIGYVVASVIWCSG 494
Query: 503 TLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLL 562
TLG++LL K RVPK+WGVPLVPWLPSLSIAMN+FL+GSL Y AFLRFIICSAVM++YYL+
Sbjct: 495 TLGISLLHKHRVPKVWGVPLVPWLPSLSIAMNVFLLGSLDYEAFLRFIICSAVMILYYLM 554
Query: 563 VGLHATYDVAHQNQEKSNNEEG 584
+G+HATYDVAHQN +++ EEG
Sbjct: 555 IGVHATYDVAHQNPKETEAEEG 576
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297844646|ref|XP_002890204.1| hypothetical protein ARALYDRAFT_471910 [Arabidopsis lyrata subsp. lyrata] gi|297336046|gb|EFH66463.1| hypothetical protein ARALYDRAFT_471910 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/581 (72%), Positives = 494/581 (85%), Gaps = 2/581 (0%)
Query: 2 AVETETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDA 61
A + E+ + + S W +W KQ FFPE SF++ ++YKSAL T PRL +RL SRS+DA
Sbjct: 4 AHQQESRSDDLSQRRSYW-RWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRSSDA 62
Query: 62 TELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASG 121
EL ++ES+ P+++CLTWWDL WL FGSVVGSG+FVITGQEA+ AGPA+VLSY SG
Sbjct: 63 YELDAARRESENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARTGAGPAVVLSYAISG 122
Query: 122 LSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSS 181
+SALLS CY EF VEIPVAGGSFS+LRVELGDF+A+IAAGNILLEA+VGAAGL RSWSS
Sbjct: 123 VSALLSVLCYAEFGVEIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRSWSS 182
Query: 182 YLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIV 241
YLAS++ N+SD R KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN I+S+V
Sbjct: 183 YLASLVK-NDSDYFRIKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLITSMV 241
Query: 242 SSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301
+ C+IVF+++VGF H KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+KPS
Sbjct: 242 TVCIIVFIVVVGFTHSKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETEKPS 301
Query: 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCA 361
RDIPIGLVGSM MIT VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV +CA
Sbjct: 302 RDIPIGLVGSMSMITVVYCLMALALTMMVKYTEIDANAAYSVAFTQIGMKWAKYLVGICA 361
Query: 362 LKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFS 421
LKGMTTSLLVGSLGQARYTTQIAR+HMIPPWFALVHPKT TPINATLLVT LSAII+ F+
Sbjct: 362 LKGMTTSLLVGSLGQARYTTQIARSHMIPPWFALVHPKTGTPINATLLVTILSAIISFFT 421
Query: 422 SLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAF 481
SL++LSSVFSF+TL IFML+A+ALLVRRYY KDVTP+ L+KFL L +++ASSIG++A
Sbjct: 422 SLDVLSSVFSFATLFIFMLVAVALLVRRYYVKDVTPETGLLKFLGFLFLIIASSIGVSAL 481
Query: 482 WNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSL 541
WN+ GWI Y VT WF+GTLG+ALLPK RVPK+WGVPLVPWLPS SIAMNLFLIGSL
Sbjct: 482 WNAGVGGWIAYAVTGVLWFIGTLGLALLPKYRVPKVWGVPLVPWLPSFSIAMNLFLIGSL 541
Query: 542 GYLAFLRFIICSAVMLVYYLLVGLHATYDVAHQNQEKSNNE 582
GY+AFLRFIIC+ VML+YYL VGLHATYDVAHQ E+S E
Sbjct: 542 GYVAFLRFIICTMVMLLYYLFVGLHATYDVAHQPLEESKFE 582
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439077|ref|XP_004137314.1| PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/567 (70%), Positives = 474/567 (83%)
Query: 17 SCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQ 76
S W +W+KQ FPE SF + +SYK AL QT RLK+RL RS+D ELI L + S ++
Sbjct: 19 SYWRRWSKQDIFPEESFRDCSSYKYALSQTCSRLKDRLLDRSSDDNELIELPKASGIGMK 78
Query: 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAV 136
KCLTWWDL WL FGSVVGSGIF ITG EA+ AGP+IV+SY+ SGLSALLS FCY+EFA+
Sbjct: 79 KCLTWWDLIWLAFGSVVGSGIFTITGLEARDDAGPSIVISYVVSGLSALLSVFCYSEFAI 138
Query: 137 EIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLR 196
E+PVAGGSFSFLR+ELGDF+A+IAAGNI LEA+VGAAGL RSWSSY ASMI+S+N D LR
Sbjct: 139 EVPVAGGSFSFLRIELGDFIAFIAAGNIFLEAIVGAAGLGRSWSSYFASMINSDNPDFLR 198
Query: 197 FKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH 256
FKV ++GFNLLDP+AV++LLV NGIA+SGTRR+S+L WI+S++S+ +I+FVI++GFV
Sbjct: 199 FKVSFLSEGFNLLDPIAVIVLLVANGIAVSGTRRTSFLTWITSVISTLLIIFVIVIGFVK 258
Query: 257 GKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316
G + NL PF P+G GVF AAAVVYWSYTGFDMVATMAEETKKPSRDIP+GL+GSM +I+
Sbjct: 259 GNSANLVPFFPFGARGVFRAAAVVYWSYTGFDMVATMAEETKKPSRDIPVGLIGSMSVIS 318
Query: 317 AVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376
+YCLMAL+LTM+ KYTEID NAA+S+AF +IGM WAKYLVS+ A+KGMTTSLLVGS+GQ
Sbjct: 319 VIYCLMALSLTMLQKYTEIDRNAAFSVAFDKIGMTWAKYLVSIVAIKGMTTSLLVGSMGQ 378
Query: 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLS 436
ARYTTQIARAH+IPP FALVHPKT TP+ ATLL T SAI+ALFSSL++LSSVFSFSTL+
Sbjct: 379 ARYTTQIARAHLIPPLFALVHPKTGTPVYATLLTTITSAIVALFSSLDVLSSVFSFSTLA 438
Query: 437 IFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTI 496
IFMLMA+ALLVRRYY KD TP ++ +KFL+CL ++ S + +T WN + +GWI YVV
Sbjct: 439 IFMLMAVALLVRRYYNKDTTPSSDYIKFLICLFSILGSCLALTTVWNLDRQGWIEYVVPA 498
Query: 497 APWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVM 556
+ WFL TL M+ LPK R PK+WGVPLVPWLPSLSI MNL LIGSLG AFLRF ICSAVM
Sbjct: 499 SFWFLSTLAMSFLPKYRSPKVWGVPLVPWLPSLSIGMNLILIGSLGTEAFLRFFICSAVM 558
Query: 557 LVYYLLVGLHATYDVAHQNQEKSNNEE 583
L+YYL +GLHATYDVAHQ+ S NEE
Sbjct: 559 LLYYLFIGLHATYDVAHQDGLGSKNEE 585
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449515788|ref|XP_004164930.1| PREDICTED: cationic amino acid transporter 8, vacuolar-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/567 (70%), Positives = 474/567 (83%)
Query: 17 SCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQ 76
S W +W+KQ FPE SF + +SYK AL QT RLK+RL RS+D ELI L + S ++
Sbjct: 19 SYWRRWSKQDIFPEESFRDCSSYKYALSQTCSRLKDRLLDRSSDDNELIELPKASGIGMK 78
Query: 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAV 136
KCLTWWDL WL FGSVVGSGIF ITG EA+ AGP+IV+SY+ SGLSALLS FCY+EFA+
Sbjct: 79 KCLTWWDLIWLAFGSVVGSGIFTITGLEARDDAGPSIVISYVVSGLSALLSVFCYSEFAI 138
Query: 137 EIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLR 196
E+PVAGGSFSFLR+ELGDF+A+IAAGNI LEA+VGAAGL RSWSSY ASMI+S+N D LR
Sbjct: 139 EVPVAGGSFSFLRIELGDFIAFIAAGNIFLEAIVGAAGLGRSWSSYFASMINSDNPDFLR 198
Query: 197 FKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH 256
FKV ++GFNLLDP+AV++LLV NGIA+SGTRR+S+L WI+S++S+ +I+FVI++GFV
Sbjct: 199 FKVSFLSEGFNLLDPIAVIVLLVANGIAVSGTRRTSFLTWITSVISTLLIIFVIVIGFVK 258
Query: 257 GKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316
G + NL PF P+G GVF AAAVVYWSYTGFDMVATMAEETKKPSRDIP+GL+GSM +I+
Sbjct: 259 GNSANLVPFFPFGARGVFRAAAVVYWSYTGFDMVATMAEETKKPSRDIPVGLIGSMSVIS 318
Query: 317 AVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376
+YCLMAL+LTM+ KYTEID NAA+S+AF +IGM WAKYLVS+ A+KGMTTSLLVGS+GQ
Sbjct: 319 VIYCLMALSLTMLQKYTEIDRNAAFSVAFDKIGMTWAKYLVSIVAIKGMTTSLLVGSMGQ 378
Query: 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLS 436
ARYTTQIARAH+IPP FALVHPKT TP+ ATLL T SAI+ALFSSL++LSSVFSFSTL+
Sbjct: 379 ARYTTQIARAHLIPPLFALVHPKTGTPVYATLLTTITSAIVALFSSLDVLSSVFSFSTLA 438
Query: 437 IFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTI 496
IFMLMA+ALLVRRYY KD TP ++ +KFL+CL ++ S + +T WN + +GWI YVV
Sbjct: 439 IFMLMAVALLVRRYYNKDTTPSSDYIKFLICLFSILGSCLALTTVWNLDRQGWIEYVVPA 498
Query: 497 APWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVM 556
+ WFL TL M+ LPK R PK+WGVPLVPWLPSLSI MNL LIGSLG AFLRF ICSAVM
Sbjct: 499 SFWFLSTLAMSFLPKYRSPKVWGVPLVPWLPSLSIGMNLILIGSLGTEAFLRFFICSAVM 558
Query: 557 LVYYLLVGLHATYDVAHQNQEKSNNEE 583
L+YYL +GLHATYDVAHQ+ S NEE
Sbjct: 559 LLYYLFIGLHATYDVAHQDGLGSKNEE 585
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220035|ref|NP_173155.1| cationic amino acid transporter 8 [Arabidopsis thaliana] gi|75313454|sp|Q9SHH0.1|CAAT8_ARATH RecName: Full=Cationic amino acid transporter 8, vacuolar gi|5734765|gb|AAD50030.1|AC007651_25 Very similar to amino acid transporter [Arabidopsis thaliana] gi|18176204|gb|AAL60003.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|21436167|gb|AAM51371.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|332191423|gb|AEE29544.1| cationic amino acid transporter 8 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/584 (72%), Positives = 494/584 (84%), Gaps = 4/584 (0%)
Query: 2 AVETETELET---PLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRS 58
++E +LE+ L + +W KQ FFPE SF++ ++YKSAL T PRL +RL SRS
Sbjct: 5 SMEEAHQLESRSDDLSQRRSYWRWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRS 64
Query: 59 TDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYL 118
+DA EL ++ES+ P+++CLTWWDL WL FGSVVGSG+FVITGQEA+ AGPA+VLSY
Sbjct: 65 SDAYELDAARRESENPMRRCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYA 124
Query: 119 ASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARS 178
SG+SALLS CY EF VEIPVAGGSFS+LRVELGDF+A+IAAGNILLEA+VGAAGL RS
Sbjct: 125 ISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRS 184
Query: 179 WSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238
WSSYLAS++ N+SD R KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN I+
Sbjct: 185 WSSYLASLVK-NDSDYFRIKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLIT 243
Query: 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298
S+V+ C+IVF+++VGF H KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+
Sbjct: 244 SMVTVCIIVFIVVVGFTHSKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETE 303
Query: 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358
KPSRDIPIGLVGSM MIT VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV
Sbjct: 304 KPSRDIPIGLVGSMSMITVVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVG 363
Query: 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIA 418
+CALKGMTTSLLVGSLGQARYTTQIAR+HMIPPWFALVHPKT TPI ATLLVT LS+II+
Sbjct: 364 ICALKGMTTSLLVGSLGQARYTTQIARSHMIPPWFALVHPKTGTPIYATLLVTILSSIIS 423
Query: 419 LFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGI 478
F+SL +LSSVFSF+TL IFML+A+ALLVRRYY KDVTP+ L+KFL L +++ASSIG+
Sbjct: 424 FFTSLEVLSSVFSFATLFIFMLVAVALLVRRYYVKDVTPEAGLLKFLGFLFLIIASSIGV 483
Query: 479 TAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLI 538
+A WNS +GWI Y VT WF+GTLG+ALLPK RVPK+WGVPLVPWLPS SIAMNLFLI
Sbjct: 484 SALWNSGVKGWIAYTVTGVIWFIGTLGLALLPKYRVPKVWGVPLVPWLPSFSIAMNLFLI 543
Query: 539 GSLGYLAFLRFIICSAVMLVYYLLVGLHATYDVAHQNQEKSNNE 582
GSLGY+AFLRFIIC+ VML+YYL VGLHATYDVAHQ E++ E
Sbjct: 544 GSLGYVAFLRFIICTMVMLLYYLFVGLHATYDVAHQPLEEAKFE 587
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225423859|ref|XP_002278606.1| PREDICTED: uncharacterized amino acid permease YfnA-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/572 (72%), Positives = 477/572 (83%), Gaps = 5/572 (0%)
Query: 6 ETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELI 65
+T+ P R S W +W+KQ FFPE SF+N SYK+AL T RLK+RL +RS+ A E++
Sbjct: 4 QTQNHKPTR--SYW-RWSKQDFFPEESFQNLASYKTALSHTCFRLKDRLLNRSSVANEML 60
Query: 66 TLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSAL 125
L QES+ ++KCLTWWDL W+ FGSVVGSGIFVITGQE + AGPAI+LSY SG SAL
Sbjct: 61 -LFQESENAMKKCLTWWDLVWMSFGSVVGSGIFVITGQETRYDAGPAIILSYAVSGFSAL 119
Query: 126 LSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLAS 185
LS CYTEFAVEIPVAGGSFS+LRVELGDFVA+IAAGNILLEA+VGAAGLARSWSSY AS
Sbjct: 120 LSVLCYTEFAVEIPVAGGSFSYLRVELGDFVAFIAAGNILLEAIVGAAGLARSWSSYFAS 179
Query: 186 MIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCV 245
MI+++ +D LR +V FADGFNLLDP+A ++LL+ +GIAMSGTRR+S LNWISS++S V
Sbjct: 180 MINTD-TDFLRIRVSYFADGFNLLDPIAAVVLLIADGIAMSGTRRTSILNWISSVLSFMV 238
Query: 246 IVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305
I+F+I++GF+ GKT+NL PF PYG GVF AAAVVYWSYTGFDMVATMAEETK P+RDIP
Sbjct: 239 ILFIIVIGFIRGKTSNLVPFFPYGARGVFRAAAVVYWSYTGFDMVATMAEETKNPTRDIP 298
Query: 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGM 365
+GLVGSM MIT VYCLMAL L+MM KY E+D NAAYS+ F +IGM WAKYLVS+CALKGM
Sbjct: 299 LGLVGSMSMITVVYCLMALVLSMMQKYNEVDANAAYSVVFEKIGMTWAKYLVSICALKGM 358
Query: 366 TTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNI 425
TTS+L+G LGQARY TQIARAHMIPPWFALVHP+T TPINATLL+ A IALFSSL++
Sbjct: 359 TTSMLIGGLGQARYMTQIARAHMIPPWFALVHPRTGTPINATLLMAIPGATIALFSSLDV 418
Query: 426 LSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSN 485
LSS+FSFSTL IFML+A+ALLVRRYY KD T K +LVKFL CL V++ SSIGI WNSN
Sbjct: 419 LSSIFSFSTLLIFMLVAVALLVRRYYVKDTTAKRDLVKFLACLIVIIGSSIGIAVLWNSN 478
Query: 486 GRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLA 545
W+GY V WFLGTLGM LLPKQRV +WGVPLVPWLPSLSI MNLFLIGSLGY A
Sbjct: 479 TTEWVGYAVGAFLWFLGTLGMGLLPKQRVTNVWGVPLVPWLPSLSIGMNLFLIGSLGYQA 538
Query: 546 FLRFIICSAVMLVYYLLVGLHATYDVAHQNQE 577
FLRF ICSAVML+YY LVGLHATYD+A QNQ+
Sbjct: 539 FLRFFICSAVMLIYYFLVGLHATYDMARQNQQ 570
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737874|emb|CBI27075.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/561 (72%), Positives = 472/561 (84%), Gaps = 2/561 (0%)
Query: 21 QWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLT 80
+W+KQ FFPE SF+N SYK+AL T RLK+RL +RS+ A E++ L QES+ ++KCLT
Sbjct: 6 RWSKQDFFPEESFQNLASYKTALSHTCFRLKDRLLNRSSVANEML-LFQESENAMKKCLT 64
Query: 81 WWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV 140
WWDL W+ FGSVVGSGIFVITGQE + AGPAI+LSY SG SALLS CYTEFAVEIPV
Sbjct: 65 WWDLVWMSFGSVVGSGIFVITGQETRYDAGPAIILSYAVSGFSALLSVLCYTEFAVEIPV 124
Query: 141 AGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD 200
AGGSFS+LRVELGDFVA+IAAGNILLEA+VGAAGLARSWSSY ASMI+++ +D LR +V
Sbjct: 125 AGGSFSYLRVELGDFVAFIAAGNILLEAIVGAAGLARSWSSYFASMINTD-TDFLRIRVS 183
Query: 201 CFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTT 260
FADGFNLLDP+A ++LL+ +GIAMSGTRR+S LNWISS++S VI+F+I++GF+ GKT+
Sbjct: 184 YFADGFNLLDPIAAVVLLIADGIAMSGTRRTSILNWISSVLSFMVILFIIVIGFIRGKTS 243
Query: 261 NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYC 320
NL PF PYG GVF AAAVVYWSYTGFDMVATMAEETK P+RDIP+GLVGSM MIT VYC
Sbjct: 244 NLVPFFPYGARGVFRAAAVVYWSYTGFDMVATMAEETKNPTRDIPLGLVGSMSMITVVYC 303
Query: 321 LMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380
LMAL L+MM KY E+D NAAYS+ F +IGM WAKYLVS+CALKGMTTS+L+G LGQARY
Sbjct: 304 LMALVLSMMQKYNEVDANAAYSVVFEKIGMTWAKYLVSICALKGMTTSMLIGGLGQARYM 363
Query: 381 TQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFML 440
TQIARAHMIPPWFALVHP+T TPINATLL+ A IALFSSL++LSS+FSFSTL IFML
Sbjct: 364 TQIARAHMIPPWFALVHPRTGTPINATLLMAIPGATIALFSSLDVLSSIFSFSTLLIFML 423
Query: 441 MAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWF 500
+A+ALLVRRYY KD T K +LVKFL CL V++ SSIGI WNSN W+GY V WF
Sbjct: 424 VAVALLVRRYYVKDTTAKRDLVKFLACLIVIIGSSIGIAVLWNSNTTEWVGYAVGAFLWF 483
Query: 501 LGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYY 560
LGTLGM LLPKQRV +WGVPLVPWLPSLSI MNLFLIGSLGY AFLRF ICSAVML+YY
Sbjct: 484 LGTLGMGLLPKQRVTNVWGVPLVPWLPSLSIGMNLFLIGSLGYQAFLRFFICSAVMLIYY 543
Query: 561 LLVGLHATYDVAHQNQEKSNN 581
LVGLHATYD+A + + +++N
Sbjct: 544 FLVGLHATYDMAPRTESRASN 564
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532335|ref|XP_003534729.1| PREDICTED: uncharacterized amino acid permease YfnA-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/565 (69%), Positives = 472/565 (83%), Gaps = 2/565 (0%)
Query: 21 QWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLT 80
+W+K FFPE SFEN SY++AL T PRLK+RL +RS+DA EL+ L + S+ + +CLT
Sbjct: 18 RWSKCDFFPEKSFENGKSYRAALAATCPRLKDRLLNRSSDAHELLVLPRTSEHRMNRCLT 77
Query: 81 WWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV 140
WWDLTWL FGSVVGSGIFV+TGQEA+ HAGPAIVLSY ASG SALLSA CYTEFAV+IPV
Sbjct: 78 WWDLTWLAFGSVVGSGIFVVTGQEARLHAGPAIVLSYAASGFSALLSALCYTEFAVDIPV 137
Query: 141 AGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD 200
AGGSFSFLR+ELGDF+A++AAGNILLEA+VGAAGL RSWSSY ASM+ S+ D R V
Sbjct: 138 AGGSFSFLRIELGDFLAFVAAGNILLEALVGAAGLGRSWSSYFASMVKSD-PDFFRIHVP 196
Query: 201 CFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTT 260
F GF++LDP+AV +LL+ NGIA+SGTRR+S L W++S+++ +I F+I+VGFVHGK +
Sbjct: 197 SFKPGFDMLDPLAVAVLLIANGIAVSGTRRTSLLTWLTSVITVFIIAFIIVVGFVHGKAS 256
Query: 261 NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYC 320
NL PFLPYG +GVF AAAVVYWSY+GFDMVATMAEETK PSRDIPIGLVGS+ MIT +YC
Sbjct: 257 NLTPFLPYGVDGVFNAAAVVYWSYSGFDMVATMAEETKNPSRDIPIGLVGSLSMITVIYC 316
Query: 321 LMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380
LMAL+L MV YT+ID++AAYS+AF QIGM+WAKYLVS+CALKGMTTSLLVGS+GQARYT
Sbjct: 317 LMALSLVTMVNYTQIDVDAAYSVAFVQIGMSWAKYLVSLCALKGMTTSLLVGSMGQARYT 376
Query: 381 TQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFML 440
TQIAR+HMIPP+FALVHPKT TP+NATLL T S++IALFSSL++LSSVFS STL IFML
Sbjct: 377 TQIARSHMIPPFFALVHPKTGTPVNATLLTTISSSVIALFSSLDVLSSVFSISTLFIFML 436
Query: 441 MAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWF 500
MA+ALLVRRYY ++ T K++LV+ LVCL V++ SS+ A W+S GWIGY V WF
Sbjct: 437 MAVALLVRRYYVRESTAKSDLVRVLVCLFVIIGSSVVGAALWHSGKLGWIGYTVAACVWF 496
Query: 501 LGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYY 560
LGTLGM+ LPKQR PK+WGVPLVPWLPSLS+A NLFL+GSL A+ RF+IC+AVM VYY
Sbjct: 497 LGTLGMSFLPKQRAPKVWGVPLVPWLPSLSVATNLFLMGSLSSEAYWRFLICTAVMFVYY 556
Query: 561 LLVGLHATYDVAHQ-NQEKSNNEEG 584
V +HATYDV HQ N + N+EG
Sbjct: 557 FFVAVHATYDVDHQDNGLEGKNDEG 581
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147860151|emb|CAN78727.1| hypothetical protein VITISV_020011 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/572 (69%), Positives = 460/572 (80%), Gaps = 24/572 (4%)
Query: 6 ETELETPLRGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELI 65
+T+ P R S W +W+KQ FFPE SF+N SYK+AL T RLK+RL +RS+ A E++
Sbjct: 4 QTQNHKPTR--SYW-RWSKQDFFPEESFQNLASYKTALSHTCFRLKDRLLNRSSVANEML 60
Query: 66 TLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSAL 125
L QES+ ++KCLTWWDL E + AGPAI+LSY SG SAL
Sbjct: 61 -LFQESENAMKKCLTWWDL-------------------ETRYDAGPAIILSYAVSGFSAL 100
Query: 126 LSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLAS 185
LS CYTEFAVEIPVAGGSFS+LRVELGDFVA+IAAGNILLEA+VGAAGLARSWSSY AS
Sbjct: 101 LSVLCYTEFAVEIPVAGGSFSYLRVELGDFVAFIAAGNILLEAIVGAAGLARSWSSYFAS 160
Query: 186 MIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCV 245
MI+++ +D LR +V FADGFNLLDP+A ++LL+ +GIAMSGTRR+S LNWISS++S V
Sbjct: 161 MINTD-TDFLRIRVSYFADGFNLLDPIAAVVLLIADGIAMSGTRRTSILNWISSVLSFMV 219
Query: 246 IVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305
I+F+I++GF+ GKT+NL PF PYG GVF AAAVVYWSYTGFDMVATMAEETK P+RDIP
Sbjct: 220 ILFIIVIGFIRGKTSNLVPFFPYGARGVFRAAAVVYWSYTGFDMVATMAEETKNPTRDIP 279
Query: 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGM 365
+GLVGSM MIT VYCLMAL L+MM KY E+D NAAYS+ F +IGM WAKYLVS+CALKGM
Sbjct: 280 LGLVGSMSMITVVYCLMALVLSMMQKYNEVDANAAYSVVFEKIGMTWAKYLVSICALKGM 339
Query: 366 TTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNI 425
TTS+L+G LGQARY TQIARAHMIPPWFALVHP+T TPINATLL+ A IALFSSL++
Sbjct: 340 TTSMLIGGLGQARYMTQIARAHMIPPWFALVHPRTGTPINATLLMAIPGATIALFSSLDV 399
Query: 426 LSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSN 485
LSS+FSFSTL IFML+A+ALLVRRYY KD T K +LVKFL CL V++ SSIGI WNSN
Sbjct: 400 LSSIFSFSTLLIFMLVAVALLVRRYYVKDTTAKRDLVKFLACLIVIIGSSIGIAVLWNSN 459
Query: 486 GRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLA 545
W+GY V WFLGTLGM LLPKQRV +WGVPLVPWLPSLSI MNLFLIGSLGY A
Sbjct: 460 TTEWVGYAVGAFLWFLGTLGMGLLPKQRVTNVWGVPLVPWLPSLSIGMNLFLIGSLGYQA 519
Query: 546 FLRFIICSAVMLVYYLLVGLHATYDVAHQNQE 577
FLRF ICSAVML+YY LVGLHATYD+A QNQ+
Sbjct: 520 FLRFFICSAVMLIYYFLVGLHATYDMARQNQQ 551
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| TAIR|locus:2020387 | 590 | CAT8 "cationic amino acid tran | 0.964 | 0.955 | 0.692 | 4.4e-210 | |
| TAIR|locus:2044682 | 569 | CAT5 "AT2G34960" [Arabidopsis | 0.945 | 0.971 | 0.582 | 1.1e-176 | |
| TAIR|locus:2127398 | 594 | AAT1 "AT4G21120" [Arabidopsis | 0.967 | 0.952 | 0.487 | 7.3e-146 | |
| TAIR|locus:2075745 | 584 | CAT7 "cationic amino acid tran | 0.916 | 0.917 | 0.368 | 4.1e-97 | |
| TAIR|locus:2175488 | 583 | CAT6 "AT5G04770" [Arabidopsis | 0.912 | 0.915 | 0.375 | 1.8e-96 | |
| DICTYBASE|DDB_G0279983 | 766 | ctrB "solute carrier family 7 | 0.911 | 0.695 | 0.310 | 4.9e-69 | |
| TIGR_CMR|BA_0818 | 467 | BA_0818 "amino acid permease f | 0.728 | 0.912 | 0.321 | 2.9e-62 | |
| UNIPROTKB|E1BCI3 | 629 | SLC7A4 "Uncharacterized protei | 0.642 | 0.597 | 0.303 | 8.8e-59 | |
| WB|WBGene00016806 | 589 | C50D2.2 [Caenorhabditis elegan | 0.676 | 0.672 | 0.325 | 7.8e-58 | |
| DICTYBASE|DDB_G0291227 | 562 | ctrA "solute carrier family 7 | 0.904 | 0.941 | 0.290 | 2.2e-57 |
| TAIR|locus:2020387 CAT8 "cationic amino acid transporter 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2031 (720.0 bits), Expect = 4.4e-210, P = 4.4e-210
Identities = 392/566 (69%), Positives = 450/566 (79%)
Query: 17 SCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQ 76
S W +W KQ FFPE SF++ ++YKSAL T PRL +RL SRS+DA EL ++ES+ P++
Sbjct: 24 SYW-RWRKQDFFPEFSFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRESENPMR 82
Query: 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAV 136
+CLTWWDL WL FGSVVGSG+FVITGQEA+ AGPA+V CY EF V
Sbjct: 83 RCLTWWDLLWLSFGSVVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEFGV 142
Query: 137 EIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLR 196
EIPVAGGSFS+LRVELGDF+A+IAAGNI RSWSSYLAS++ N+SD R
Sbjct: 143 EIPVAGGSFSYLRVELGDFIAFIAAGNILLEAMVGAAGLGRSWSSYLASLV-KNDSDYFR 201
Query: 197 FKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVH 256
KVD FA GF+LLDPVAV +LLV NGIAM+GT+R+SWLN GF H
Sbjct: 202 IKVDSFAKGFDLLDPVAVAVLLVANGIAMTGTKRTSWLNLITSMVTVCIIVFIVVVGFTH 261
Query: 257 GKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316
KT+NL PF PYG +GV ++AAVVYWSYTGFDMVA MAEET+KPSRDIPIGLVGSM MIT
Sbjct: 262 SKTSNLVPFFPYGAKGVVQSAAVVYWSYTGFDMVANMAEETEKPSRDIPIGLVGSMSMIT 321
Query: 317 AVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376
VYCLMALALTMMVKYTEID NAAYS+AF QIGM WAKYLV +CALKGMTTSLLVGSLGQ
Sbjct: 322 VVYCLMALALTMMVKYTEIDANAAYSVAFAQIGMKWAKYLVGICALKGMTTSLLVGSLGQ 381
Query: 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLS 436
ARYTTQIAR+HMIPPWFALVHPKT TPI ATLLVT LS+II+ F+SL +LSSVFSF+TL
Sbjct: 382 ARYTTQIARSHMIPPWFALVHPKTGTPIYATLLVTILSSIISFFTSLEVLSSVFSFATLF 441
Query: 437 IFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTI 496
IFML+A+ALLVRRYY KDVTP+ L+KFL L +++ASSIG++A WNS +GWI Y VT
Sbjct: 442 IFMLVAVALLVRRYYVKDVTPEAGLLKFLGFLFLIIASSIGVSALWNSGVKGWIAYTVTG 501
Query: 497 APWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVM 556
WF+GTLG+ALLPK RVPK+WGVPLVPWLPS SIAMNLFLIGSLGY+AFLRFIIC+ VM
Sbjct: 502 VIWFIGTLGLALLPKYRVPKVWGVPLVPWLPSFSIAMNLFLIGSLGYVAFLRFIICTMVM 561
Query: 557 LVYYLLVGLHATYDVAHQNQEKSNNE 582
L+YYL VGLHATYDVAHQ E++ E
Sbjct: 562 LLYYLFVGLHATYDVAHQPLEEAKFE 587
|
|
| TAIR|locus:2044682 CAT5 "AT2G34960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1716 (609.1 bits), Expect = 1.1e-176, P = 1.1e-176
Identities = 325/558 (58%), Positives = 410/558 (73%)
Query: 19 WHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKC 78
W +W+K+ FFPE SF++ SY++AL QT R KNRL SRS D E L+++S+ +++C
Sbjct: 9 W-RWSKRDFFPEESFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSEHEMKRC 67
Query: 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAVEI 138
LTWWDL W FGSV+G+GIFV+TGQEA + AGPAIV FCYTEFAVEI
Sbjct: 68 LTWWDLVWFGFGSVIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYTEFAVEI 127
Query: 139 PVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLRFK 198
PVAGGSF++LR+ELGDF A+I AGNI R+W+SY A++++ + + LR K
Sbjct: 128 PVAGGSFAYLRIELGDFAAFITAGNILLESIVGTAAVARAWTSYFATLLN-RSPNALRIK 186
Query: 199 VDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVHGK 258
D + GFNLLDP+AV+++ IA TR++S LNW GF+H
Sbjct: 187 TD-LSSGFNLLDPIAVVVIAASATIASISTRKTSLLNWIASAINTLVIFFVIIAGFIHAD 245
Query: 259 TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAV 318
T+NL PFLP+G EGVF AAAVVY++Y GFD +ATMAEETK PSRDIPIGL+GSM +IT +
Sbjct: 246 TSNLTPFLPFGPEGVFRAAAVVYFAYGGFDSIATMAEETKNPSRDIPIGLLGSMSIITVI 305
Query: 319 YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378
YCLMAL+L+MM KYT+ID NAAYS+AF+ +GM W KYLV++ ALKGMTT LLVG+LGQAR
Sbjct: 306 YCLMALSLSMMQKYTDIDPNAAYSVAFQSVGMKWGKYLVALGALKGMTTVLLVGALGQAR 365
Query: 379 YTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIF 438
Y T IAR HMIPP FALVHPKT TPINA LLV SA+IA FS L++L+S+ S STL IF
Sbjct: 366 YVTHIARTHMIPPIFALVHPKTGTPINANLLVAIPSALIAFFSGLDVLASLLSISTLFIF 425
Query: 439 MLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRG-WIGYVVTIA 497
+M IALLVRRYY + TP+ +L+K + CL VV SS+G +A+W +G WIGY VT+
Sbjct: 426 TMMPIALLVRRYYVRQDTPRVHLIKLITCLLFVVVSSMGTSAYWGMQRKGSWIGYTVTVP 485
Query: 498 PWFLGTLGMAL-LPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVM 556
WFLGTLG+ +P+QR PK+WGVPLVPWLP LSIA N+FL+GSLG +AF+RF +C+ M
Sbjct: 486 FWFLGTLGIVFFVPQQRTPKVWGVPLVPWLPCLSIATNIFLMGSLGAMAFVRFGVCTLAM 545
Query: 557 LVYYLLVGLHATYDVAHQ 574
L+YY L+GLHAT+D+AHQ
Sbjct: 546 LLYYFLLGLHATFDMAHQ 563
|
|
| TAIR|locus:2127398 AAT1 "AT4G21120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1425 (506.7 bits), Expect = 7.3e-146, P = 7.3e-146
Identities = 281/576 (48%), Positives = 374/576 (64%)
Query: 14 RGTSCWHQWNKQAFFPEPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQ 73
RG SC K F PE SF++ +Y ALK+T R +R+ +RS D+ E+ ++ S
Sbjct: 13 RGCSC----TKDDFLPEESFQSMGNYLKALKETPSRFMDRIMTRSLDSDEINEMKARSGH 68
Query: 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTE 133
++K LTWWDL W G+V+GSGIFV+TG EA+ H+GPA+V FCYTE
Sbjct: 69 EMKKTLTWWDLMWFGIGAVIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAMLSVFCYTE 128
Query: 134 FAVEIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSD 193
FAVEIPVAGGSF++LRVELGDF+A+IAAGNI RSW+SY A++++ D
Sbjct: 129 FAVEIPVAGGSFAYLRVELGDFMAFIAAGNIILEYVVGGAAVARSWTSYFATLLNHKPED 188
Query: 194 LLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXG 253
R V + ++ LDP+AV + + +A+ GT+ SS N+ G
Sbjct: 189 F-RIIVHKLGEDYSHLDPIAVGVCAIICVLAVVGTKGSSRFNYIASIIHMVVILFVIIAG 247
Query: 254 FVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313
F N F PYG GVF++AAV++++Y GFD V+TMAEETK P RDIPIGLVGSM
Sbjct: 248 FTKADVKNYSDFTPYGVRGVFKSAAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMV 307
Query: 314 MITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGS 373
+ T YCLMA+ L +M Y +ID +A +S+AF +G +WAKY+V+ ALKGMTT LLVG+
Sbjct: 308 VTTVCYCLMAVTLCLMQPYQQIDPDAPFSVAFSAVGWDWAKYIVAFGALKGMTTVLLVGA 367
Query: 374 LGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFS 433
+GQARY T IARAHM+PPW A V+ KT TPINAT+++ +A+IA F+ L IL+ + S S
Sbjct: 368 IGQARYMTHIARAHMMPPWLAQVNAKTGTPINATVVMLAATALIAFFTKLKILADLLSVS 427
Query: 434 TLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYV 493
TL IFM +A+ALLVRRYY T + KFLV L +++ASS +W GWIGY
Sbjct: 428 TLFIFMFVAVALLVRRYYVTGETSTRDRNKFLVFLGLILASSTATAVYWALEEEGWIGYC 487
Query: 494 VTIAPWFLGTLGMA-LLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIIC 552
+T+ WFL T+ M L+P+ R PK+WGVPLVPWLPS SIA+N+FL+GS+ +F+RF I
Sbjct: 488 ITVPIWFLSTVAMKFLVPQARAPKIWGVPLVPWLPSASIAINIFLLGSIDTKSFVRFAIW 547
Query: 553 SAVMLVYYLLVGLHATYDVAH----QNQEKSNNEEG 584
+ ++L+YY+L GLHATYD A + Q EEG
Sbjct: 548 TGILLIYYVLFGLHATYDTAKATLKEKQALQKAEEG 583
|
|
| TAIR|locus:2075745 CAT7 "cationic amino acid transporter 7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 205/556 (36%), Positives = 315/556 (56%)
Query: 30 EPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCF 89
+ SF + Y ++L T R R S ST E+ ++ S + +++ L W+DL L
Sbjct: 11 DTSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDLIGLGI 70
Query: 90 GSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAVEIPVAGGSFSFLR 149
G ++G+G+FV TG+ ++ +AGP+IV FCYTEFAV +PVAGG+FS++R
Sbjct: 71 GGMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIR 130
Query: 150 VELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLRFKVDCFADGFNLL 209
+ G+F A+I N+ R +++YL S + S+ RF V +GFN +
Sbjct: 131 ITFGEFPAFITGANLIMDYVLSNAAVSRGFTAYLGSAFGISTSEW-RFIVSGLPNGFNEI 189
Query: 210 DPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVHGKTTNL----DP- 264
DP+AV+++L + TR SS +N GF G NL +P
Sbjct: 190 DPIAVIVVLAVTFVICYSTRESSKVNMVLTALHIAFIVFVIVMGFSKGDVKNLTRPDNPE 249
Query: 265 ----FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYC 320
F P+G GVF AA+VY SY G+D V+TMAEE K P +DIP+G+ GS+ ++ +YC
Sbjct: 250 NPSGFFPFGVSGVFNGAAMVYLSYIGYDAVSTMAEEVKDPVKDIPMGISGSVAIVIVLYC 309
Query: 321 LMALALTMMVKYTEIDMNAAYSIAF-RQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARY 379
LMA++++M++ Y ID A YS AF + G W +V + A G+ TSL+V LGQARY
Sbjct: 310 LMAISMSMLLPYDLIDAEAPYSAAFSKSEGWEWVTRVVGIGASFGILTSLIVAMLGQARY 369
Query: 380 TTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFM 439
I R+ ++P WFA VHPKT TP+NA+ + +A++ALF+ LN+L ++ S TL +F
Sbjct: 370 MCVIGRSRVVPIWFAKVHPKTSTPVNASAFLGIFTAVLALFTDLNVLLNLVSIGTLFVFY 429
Query: 440 LMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRG---W--IGYVV 494
++A A++ RRY T + FL CL + +SI T W G W +G
Sbjct: 430 MVANAVIFRRYVTVGYTEPWPTLSFL-CLFSI--TSILFTLVWQLAPSGPPKWFILG-AS 485
Query: 495 TIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSA 554
T+ + + ++P+ R+P+ WGVPL+PW P +SI +N+FL+GSL +++RF S
Sbjct: 486 TVTAIAIVQIFHCVVPQARIPEFWGVPLMPWTPCVSIFLNIFLLGSLDAPSYIRFGFFSG 545
Query: 555 VMLVYYLLVGLHATYD 570
++++ Y+ +HA+YD
Sbjct: 546 LVVLVYVFYSVHASYD 561
|
|
| TAIR|locus:2175488 CAT6 "AT5G04770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
Identities = 208/554 (37%), Positives = 313/554 (56%)
Query: 32 SFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCFGS 91
SF + Y ++L T RL R S ST + E+ ++ S + +++ L W+DL L G
Sbjct: 14 SFSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIGG 73
Query: 92 VVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAVEIPVAGGSFSFLRVE 151
+VG+G+FV TG+ ++ AGP+IV FCYTEFAV +PVAGG+FS++R+
Sbjct: 74 MVGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRIT 133
Query: 152 LGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDP 211
G+F A+ N+ RS+++YL + + S RF V GFN +DP
Sbjct: 134 FGEFPAFFTGANLVMDYVMSNAAVSRSFTAYLGTAFGISTSKW-RFVVSGLPKGFNEIDP 192
Query: 212 VAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVHGKTTNL----DP--- 264
VAVL++LV I TR SS +N GF+ G + NL +P
Sbjct: 193 VAVLVVLVITVIICCSTRESSKVNMIMTAFHIAFIFFVIVMGFIKGDSKNLSSPANPEHP 252
Query: 265 --FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLM 322
F P+G GVF AA+VY SY G+D V+TMAEE + P +DIP+G+ GS+ ++T +YCLM
Sbjct: 253 SGFFPFGAAGVFNGAAMVYLSYIGYDAVSTMAEEVENPVKDIPVGVSGSVAIVTVLYCLM 312
Query: 323 ALALTMMVKYTEIDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381
A++++M++ Y ID A +S AFR G W +V + A G+ TSLLV LGQARY
Sbjct: 313 AVSMSMLLPYDLIDPEAPFSAAFRGSNGWEWVTKVVGIGASFGILTSLLVAMLGQARYMC 372
Query: 382 QIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLM 441
I R+ ++P WFA +HPKT TP+NA+ + +A +ALF+ LN+L ++ S TL +F ++
Sbjct: 373 VIGRSRVVPFWFAKIHPKTSTPVNASTFLGIFTAALALFTDLNVLLNLVSIGTLFVFYMV 432
Query: 442 AIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRG-----WIGYVVTI 496
A AL+ RRY T + FL ++ +S+ T W G +G +
Sbjct: 433 ANALIFRRYVPVGPTKPWPTLCFLTLFSI---TSLVFTLIWKLVPEGKPKAFMLGASAVV 489
Query: 497 APWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVM 556
A + + ++P+ R P+LWGVP +PW P +SI +N+FL+GSL +++RF S ++
Sbjct: 490 AIAIVLSF-QCVVPQARKPELWGVPFMPWTPCVSIFLNIFLLGSLDAPSYVRFGFFSGLI 548
Query: 557 LVYYLLVGLHATYD 570
++ YL G+HA+ D
Sbjct: 549 VLVYLFYGVHASSD 562
|
|
| DICTYBASE|DDB_G0279983 ctrB "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 172/554 (31%), Positives = 286/554 (51%)
Query: 30 EPSFENTTSYKSALKQTYPRLKNRLFSRSTDATELITLQQES-KQPLQKCLTWWDLTWLC 88
EPS T+ S + L+N+ + + ++ IT + L+KCL DL
Sbjct: 37 EPSPSTGTNDTSMKNEDLFNLENQTSTLNGSSSVSITNGNGGGTKGLKKCLNVTDLLAFG 96
Query: 89 FGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAVEIPVAGGSFSFL 148
GS++G+GIFV+TG A + AGPAIV CY EFA IP +G ++S+
Sbjct: 97 VGSIIGAGIFVLTGYAAHEKAGPAIVISYLVAGICCGLSGLCYAEFASRIPCSGSTYSYS 156
Query: 149 RVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLRFKVDCF-ADGFN 207
+ +G+ +A+I ++ R WS YL S+I+S+ L + ADGF+
Sbjct: 157 YIMVGELIAWIVGWDLTLEYMIASASVGRGWSGYLGSIINSSGGKLPHPIAPVYLADGFS 216
Query: 208 LLDPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVHGKTTNLDPFLP 267
+ D +A L +++ + I G + S+ N G V+ T+N D F P
Sbjct: 217 V-DIIAFLSIMILSLIIAMGMKESARFNKIFVVIKIAIIIFVIVLGSVYADTSNWDNFAP 275
Query: 268 YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALT 327
YG +G+F AAA+ +++Y GFD V +AEE + P RD+PIG++GS+ + T +Y A LT
Sbjct: 276 YGAKGIFNAAAITFFAYLGFDGVCNVAEEVENPQRDLPIGILGSLGISTVLYIGTAGVLT 335
Query: 328 MMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387
++V Y ID+ A S+AF IG+ WA +V++ A G+TT+ L G + Q R ++R
Sbjct: 336 LLVPYHLIDVEAPLSVAFDNIGLKWASIIVAIGAFAGLTTAQLGGLISQPRLYYSLSRDG 395
Query: 388 MIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLV 447
++P WF +HP+ +TP NAT+ A I+LF +++IL+ + S TL F L++ +L+
Sbjct: 396 LLPKWFGEIHPRFKTPFNATMFTGVCCATISLFVNIDILADMVSIGTLLSFTLVSTCVLI 455
Query: 448 RRYYE-KDVT------PKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWF 500
RY + + ++ P N FL +V + + A + + + V + F
Sbjct: 456 LRYPKPRTISESTARYPINKFPLFLQSSATLVPIIVVLAAITSLGYVKSLHWAVILVFGF 515
Query: 501 LGTLGMALLP------KQRV----PKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFI 550
G L + +P ++ + K + PLVP++P LSI N++L+ SL + ++R +
Sbjct: 516 FGVL-FSSIPFFFNETQETILSSSKKTFLCPLVPFIPILSIWANMYLMVSLSWGTWVRLV 574
Query: 551 ICSAVMLVYYLLVG 564
+ + L+ Y+ G
Sbjct: 575 VWLFIGLLIYIFYG 588
|
|
| TIGR_CMR|BA_0818 BA_0818 "amino acid permease family protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 138/429 (32%), Positives = 222/429 (51%)
Query: 67 LQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXX 126
L ES + LQ+ LT DLT+L G+V+G+GIFV+TG A KH+GP I+
Sbjct: 10 LSTESPRQLQRTLTALDLTFLGIGAVIGTGIFVLTGIVAAKHSGPGIMLSFLIAAFTCAC 69
Query: 127 XXFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASM 186
FCY EFA IPV+G +++ + +G+ VA+I + WS YL S+
Sbjct: 70 VAFCYAEFASSIPVSGSVYTYAYMTVGEVVAFIVGWCLMLEYLLAVAAVAVGWSGYLQSL 129
Query: 187 IDSNNSDLLRFKVDCFADGFN-LLDPVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXX 245
+ N L G L+D AV ILL+ + G R S+ +N
Sbjct: 130 LQGFNIHLPAIIASAPGVGKGGLIDLPAVCILLIITVLLSFGIRESARINNIMVLIKLAV 189
Query: 246 XXXXXXXGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305
G + K N PF+P+G +G+ AA V++++ GFD +AT AEETKKP RD+P
Sbjct: 190 IIAFIVAGAKYVKPENWTPFIPFGYDGIITGAATVFFAFLGFDAIATAAEETKKPQRDLP 249
Query: 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGM 365
IG++GS+ + T +Y +++ LT MV YT++D++ + A +G + L++V A+ GM
Sbjct: 250 IGIIGSLLICTVLYMIVSFVLTGMVPYTQLDVSDPVAFALHFVGEDTIAGLLAVGAMTGM 309
Query: 366 TTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNI 425
TT LLV GQ R + ++R ++P A V+ + + P+ T + ++A++A L++
Sbjct: 310 TTVLLVVMYGQVRVSYAMSRDGLLPKALARVNKRVKIPLLNTWITGVVAALLAGLLDLHV 369
Query: 426 LSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSN 485
L+++ + TL+ F + A+L+ R D+ K V + VVA + N +
Sbjct: 370 LANLVNIGTLTAFTFVCCAVLILRKTHPDL--KRGFRTPFVPVLPVVAILCCLYLMINLS 427
Query: 486 GRGWIGYVV 494
WI + +
Sbjct: 428 KTTWISFAI 436
|
|
| UNIPROTKB|E1BCI3 SLC7A4 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 116/382 (30%), Positives = 184/382 (48%)
Query: 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEF 134
LQ+CL+ DLT L GS+VGSG++V+TG AK+ GPA+ CY EF
Sbjct: 33 LQRCLSALDLTLLGVGSMVGSGLYVLTGVVAKEVTGPAVTVSFVVAAVASLMAALCYAEF 92
Query: 135 AVEIPVAGGSFSFLRVELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDL 194
+P G ++ F V +G+ A++ N+ R+WS YL +M D +
Sbjct: 93 GARVPRTGSAYLFTYVSIGELWAFLIGWNLVLEYVIASAAVARAWSGYLDAMFDHRIQNF 152
Query: 195 LRFKVDCFADGFNLLDP--VAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXX 252
+ + F P +A I+L+ + G R SSWLN
Sbjct: 153 TEAHLGVWQVPFLARSPDWLAAGIILLASAFVSCGARVSSWLNHTLSAVSMIVILFIVVL 212
Query: 253 GFVHGKTTNLDP----FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308
GF+ + +N F P+G GV A ++++ GFD++A +EE + P R +P+ +
Sbjct: 213 GFILARPSNWGEAEGGFAPFGFSGVMSGTATCFYAFVGFDVIAASSEEARDPKRAVPLAI 272
Query: 309 VGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTS 368
S+ + Y L++ LT+M+ + ++ N+A + AF Q G +WA YLV+ ++ MTT
Sbjct: 273 ALSLGLAATAYILVSAVLTLMIPWHSLNPNSALADAFYQRGYSWAGYLVATGSICAMTTV 332
Query: 369 LLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSS 428
L G R +A + FA VHP+TQ P+ L L+A++ L L+ L
Sbjct: 333 QLSGLFCLPRIIYAMAADGLFFEMFAYVHPRTQVPLLGILAFGALTAVVTLLLDLDALVQ 392
Query: 429 VFSFSTLSIFMLMAIALLVRRY 450
S TL + +AI++LV R+
Sbjct: 393 FLSIGTLLAYTFVAISVLVLRF 414
|
|
| WB|WBGene00016806 C50D2.2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
Identities = 136/418 (32%), Positives = 208/418 (49%)
Query: 47 YPRLKNRLFS-RSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEA 105
+ L+ R+F ++ A E+ T PL++CL+ +D+T L G ++G+GI+V+TG
Sbjct: 3 FSALRERVFRLKNLPAGEIAT-------PLRRCLSTFDITLLGVGHMIGAGIYVLTGSVV 55
Query: 106 KKHAGPAIVXXXXXXXXXXXXXXFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIX 165
+ AGP+I+ CY EF P AG ++++ V +G+ A++ NI
Sbjct: 56 RNTAGPSIILSFLLAGFASLLSALCYAEFGARFPKAGSAYTYTYVGVGELWAFVIGWNII 115
Query: 166 XXXXXXXXXXXRSWSSYLASMIDS--NNSDLLRFKVDCFADGF--NLLDPVA-VLILLVC 220
RSWS YL S++ + +NS + R A F + D +A +LI+LV
Sbjct: 116 LEHMLGAAAVARSWSGYLDSLLGNVISNSTIARTGHLHEASSFFGDYPDLLAFLLIVLVA 175
Query: 221 NGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVHGKTT---NLDP-----FLPYGTEG 272
+A+ G++ S+ N G + +D F PYG G
Sbjct: 176 FFVAL-GSKVSTNFNSFLTILNIGIVVIVVFYGITFADFSLWSGVDEKGNSRFFPYGVSG 234
Query: 273 VFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKY 332
+F AA +++Y GFD +AT EE K P+R IPI SM ++T Y LM+ +LT+M+ Y
Sbjct: 235 MFAGAASCFFAYIGFDGLATAGEEAKDPARSIPIATFSSMTIVTLSYVLMSASLTLMIPY 294
Query: 333 TEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPW 392
+ AA+S AF G +A Y VSV AL GMTTSL+ G R +A ++
Sbjct: 295 NMVHPTAAFSDAFTMRGAEFASYAVSVGALFGMTTSLVGGMFALPRCVFSMADDGLLFSS 354
Query: 393 FALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRY 450
A V+PKTQ P A L+ L+AIIAL + L S TL + +++ ++V RY
Sbjct: 355 LASVNPKTQVPTQALLIFGFLTAIIALLFDITTLVEFLSIGTLLAYSIVSACVIVLRY 412
|
|
| DICTYBASE|DDB_G0291227 ctrA "solute carrier family 7 member protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 164/565 (29%), Positives = 262/565 (46%)
Query: 31 PSFENTTSYK-SALKQTYPRLKNRLFSRSTDATELITLQQESKQPLQKCLTWWDLTWLCF 89
P +N Y ++L + YP N F D T E L KCLT +D+
Sbjct: 15 PLLKNRKIYSLNSLIRKYP--VNG-FQDDDDNNNQQTNNGEGN--LNKCLTVFDIISYGI 69
Query: 90 GSVVGSGIFVITGQEAKKHAGPAIVXXXXXXXXXXXXXXFCYTEFAVEIPVAGGSFSFLR 149
GS VG+G+FV G +AGP + FCY+EF+ IP +G +++F
Sbjct: 70 GSTVGAGVFVSIGIAISSYAGPGTLLSFLFSAIACLISAFCYSEFSARIPASGSAYTFAY 129
Query: 150 VELGDFVAYIAAGNIXXXXXXXXXXXXRSWSSYLASMIDSNNSDLLRFKVDCFADGFNLL 209
V LG+++ + N+ R W Y S+I S + K F G+ +
Sbjct: 130 VSLGEYMGWFVGWNLTLEYAISASAVARGWVGYF-SVIFS----IFGAKTPQFIQGYQIN 184
Query: 210 D-----PVAVLILLVCNGIAMSGTRRSSWLNWXXXXXXXXXXXXXXXXGFVHGKTTNLDP 264
D P+A LI++ C I + G + S+ N G ++ K N P
Sbjct: 185 DWININPIAPLIIVFCTIILVFGIKDSARFNMIITCINILTILFFIVLGSIYVKVENWTP 244
Query: 265 FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMAL 324
FLP+G +GVF A +VV++SY GFD V T+A E K P RD+PIG++GS+ + T++Y + L
Sbjct: 245 FLPFGFDGVFNACSVVFFSYVGFDSVTTLAGEVKNPKRDLPIGVIGSLVIATSLYIGVTL 304
Query: 325 ALTMMVKYTEIDMNAAYSIAFRQIG--MNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382
L+ MV + E+ + S AF G M WA +++ L +T S L +GQ R Q
Sbjct: 305 VLSGMVNFREVSQGSPLSDAFIHNGLDMKWAAMIIAFGTLTSLTASTLCCLIGQPRIYLQ 364
Query: 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMA 442
+A+ + F ++ K Q P+ L ++++A+ L+ L+++ S TL F +
Sbjct: 365 MAKDGLFFKKFGELNKK-QVPVFGILFTCGFASLLAIVLDLDNLTNMISIGTLLAFTCVC 423
Query: 443 IALLVRRYYEKDVTPKNNLVKFLVCLTV-VVASSIGITAFWNSNG-RGWIGYVVTIAPWF 500
++V RY +D + + LV + VVA G ++ NG + WI V+ +
Sbjct: 424 AGVVVMRYRNEDGSENGPIPSTLVLFVLFVVACVFGAASY---NGWKIWIQIVLAVIQ-- 478
Query: 501 LGTLGMALLPKQRVPK----LWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVM 556
L + + KQ + K + PLVP +P L I +N + I L +F+R I + V
Sbjct: 479 LALIILLCFKKQTLDKSTCNYFLCPLVPIIPCLGIIINTYFIMHLDSASFIRMAIWTVVG 538
Query: 557 LVYYLLVGLHATYDVAHQNQEKSNN 581
+ Y + Y + + +NN
Sbjct: 539 TIVYFV------YSIRNSKLNNTNN 557
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SHH0 | CAAT8_ARATH | No assigned EC number | 0.7226 | 0.9914 | 0.9830 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 585 | |||
| TIGR00906 | 557 | TIGR00906, 2A0303, cationic amino acid transport p | 1e-156 | |
| TIGR00909 | 429 | TIGR00909, 2A0306, amino acid transporter | 2e-69 | |
| COG0531 | 466 | COG0531, PotE, Amino acid transporters [Amino acid | 5e-54 | |
| pfam13520 | 425 | pfam13520, AA_permease_2, Amino acid permease | 1e-38 | |
| TIGR00911 | 501 | TIGR00911, 2A0308, L-type amino acid transporter | 1e-21 | |
| TIGR00908 | 442 | TIGR00908, 2A0305, ethanolamine permease | 2e-21 | |
| pfam00324 | 473 | pfam00324, AA_permease, Amino acid permease | 1e-20 | |
| PRK11357 | 445 | PRK11357, frlA, putative fructoselysine transporte | 6e-20 | |
| TIGR00905 | 473 | TIGR00905, 2A0302, transporter, basic amino acid/p | 3e-13 | |
| COG1113 | 462 | COG1113, AnsP, Gamma-aminobutyrate permease and re | 8e-13 | |
| pfam13906 | 51 | pfam13906, AA_permease_C, C-terminus of AA_permeas | 1e-12 | |
| PRK10644 | 445 | PRK10644, PRK10644, arginine:agmatin antiporter; P | 2e-10 | |
| PRK11387 | 471 | PRK11387, PRK11387, S-methylmethionine transporter | 5e-10 | |
| TIGR03428 | 475 | TIGR03428, ureacarb_perm, permease, urea carboxyla | 3e-08 | |
| TIGR00907 | 482 | TIGR00907, 2A0304, amino acid permease (GABA perme | 4e-08 | |
| COG0833 | 541 | COG0833, LysP, Amino acid transporters [Amino acid | 5e-08 | |
| TIGR01773 | 452 | TIGR01773, GABAperm, gamma-aminobutyrate permease | 3e-07 | |
| PRK11021 | 410 | PRK11021, PRK11021, putative transporter; Provisio | 7e-07 | |
| PRK15049 | 499 | PRK15049, PRK15049, L-asparagine permease; Provisi | 8e-07 | |
| TIGR03813 | 474 | TIGR03813, put_Glu_GABA_T, putative glutamate/gamm | 3e-06 | |
| PRK10238 | 456 | PRK10238, PRK10238, aromatic amino acid transporte | 7e-06 | |
| PRK10249 | 458 | PRK10249, PRK10249, phenylalanine transporter; Pro | 9e-06 | |
| TIGR03810 | 468 | TIGR03810, arg_ornith_anti, arginine-ornithine ant | 2e-05 | |
| TIGR04299 | 430 | TIGR04299, antiport_PotE, putrescine-ornithine ant | 5e-05 | |
| PRK10580 | 457 | PRK10580, proY, putative proline-specific permease | 6e-04 | |
| PRK10197 | 446 | PRK10197, PRK10197, gamma-aminobutyrate transporte | 7e-04 | |
| PRK10836 | 489 | PRK10836, PRK10836, lysine transporter; Provisiona | 0.001 | |
| TIGR00913 | 478 | TIGR00913, 2A0310, amino acid permease (yeast) | 0.002 |
| >gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease | Back alignment and domain information |
|---|
Score = 459 bits (1183), Expect = e-156
Identities = 184/544 (33%), Positives = 287/544 (52%), Gaps = 36/544 (6%)
Query: 63 ELITLQQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGL 122
+++ L + +++CLT WDL L GS +G+GI+V+TG+ A+ +GPAIVLS+L SGL
Sbjct: 14 KIVDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGL 73
Query: 123 SALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSY 182
+A+LS FCY EF +P AG ++ + V +G+ A+I N++LE V+G A +ARSWS+Y
Sbjct: 74 AAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAY 133
Query: 183 LASMIDSNNSDLLRFKVDCFADGFNL-LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIV 241
+++ R DG D AV ++L+ + G + S+W+N I + +
Sbjct: 134 FDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAI 193
Query: 242 SSCVIVFVIIVGFVHGKTTNLDP--------FLPYGTEGVFEAAAVVYWSYTGFDMVATM 293
+ V++FVII GF N F+PYG GV AA ++++ GFD +AT
Sbjct: 194 NILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATT 253
Query: 294 AEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWA 353
EE K P R IPIG+V S+ + Y LM+ ALT+M+ Y +D +A + +AF +G A
Sbjct: 254 GEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPA 313
Query: 354 KYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTL 413
KY+V+V AL GM+TSLL G R +AR ++ W A ++ KT+TPINAT++ +
Sbjct: 314 KYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAI 373
Query: 414 SAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYY------------EKDVTPKNNL 461
+A++A L L + S TL + L+A +L+ RY EKD
Sbjct: 374 AALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVP 433
Query: 462 V---------KF---LVCLTVVVASSIGITAFWNSNGR-GW-IGYVVTIAPWFLGTLGMA 507
F + +++ SI T + W I + FL +
Sbjct: 434 FTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTI 493
Query: 508 LL-PKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLH 566
P+ + + VPLVP+LP+LSI +N+FL+ L ++RF I A+ + Y L G+
Sbjct: 494 WRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIR 553
Query: 567 ATYD 570
+ +
Sbjct: 554 HSLE 557
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557 |
| >gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter | Back alignment and domain information |
|---|
Score = 230 bits (588), Expect = 2e-69
Identities = 115/376 (30%), Positives = 200/376 (53%), Gaps = 3/376 (0%)
Query: 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEF 134
L + L +DLT L G+++G+GIFV+TG A K AGPA++LS++ +GL+AL A Y E
Sbjct: 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAEL 59
Query: 135 AVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDL 194
A +PVAG +++ +G+ A+I ++ LE V A +A W YL + DL
Sbjct: 60 AAMLPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDL 119
Query: 195 LRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF 254
+G P A+LI+L I G + S +N I ++ ++ +G
Sbjct: 120 PAVLTAKPGNGGVFNLP-ALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGA 178
Query: 255 VHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM 314
+H + N PF+P G GV A A+V++++ GF+ ++T AEE K P RDIP ++ S+ +
Sbjct: 179 IHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIV 238
Query: 315 ITAVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGS 373
+T +Y L+A + V + ++ A S+ +G +++ A+ + + +L G
Sbjct: 239 VTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGI 298
Query: 374 LGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFS 433
G +R ++R ++P + VHPKT TP + ++ + +A++A L L+ + S
Sbjct: 299 YGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIG 358
Query: 434 TLSIFMLMAIALLVRR 449
TL F + +A+++ R
Sbjct: 359 TLIAFAAVNVAVIILR 374
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429 |
| >gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 5e-54
Identities = 124/464 (26%), Positives = 231/464 (49%), Gaps = 25/464 (5%)
Query: 68 QQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLS 127
S + +K + LT L GS++GSGIF + G A PA +L++L +G+ L
Sbjct: 4 SMMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG--LAPAAILAWLIAGIIILFL 61
Query: 128 AFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMI 187
A Y E + IP AGG++++ + LG + ++A LL V+ A +A +SYL+ +
Sbjct: 62 ALSYAELSSAIPSAGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLF 121
Query: 188 DSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIV 247
+ G L+ +A+ ++ + + + G + S+ +N I +I+ +++
Sbjct: 122 PGPGL---------LSIGPLLIILIALALIALLTLLNLRGIKASAKINSIITILKIIILL 172
Query: 248 FVIIVGFVHGKTTNLDPFLPYGTEG-----VFEAAAVVYWSYTGFDMVATMAEETKKPSR 302
II+G +N + F P+ G + A + ++++TGF+ +AT+AEE K P R
Sbjct: 173 IFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKR 232
Query: 303 DIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNA---AYSIAFRQIGMNWAKYLVSV 359
IP ++ S+ ++ +Y L AL + ++ ++ +A ++A G NW ++++
Sbjct: 233 TIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAI 292
Query: 360 CALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIAL 419
AL + SLL L +R +AR ++P +FA V+PK +TP+ A +L +S I+ L
Sbjct: 293 LALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLL 352
Query: 420 F-----SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKF-LVCLTVVVA 473
+ N L S+ S + L ++L+A+ALLV R + D+ L L+ + +VA
Sbjct: 353 LFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVA 412
Query: 474 SSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKL 517
+ + A + S + V+ IA + L + L + + +
Sbjct: 413 VLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSAI 456
|
Length = 466 |
| >gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 1e-38
Identities = 105/426 (24%), Positives = 189/426 (44%), Gaps = 36/426 (8%)
Query: 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSY-LASGLSALLSAFCYTEFAVE 137
L+ L GS++GSGIFV AG A +L +A+ + +L A Y E +
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTPLIA---SAGAAAILWGWIAALIFSLAVALVYAELSSA 57
Query: 138 IPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRF 197
P GG + +L+ G VA+IAA L ++G A + + YL S +
Sbjct: 58 FPRNGGIYVWLKNAFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLVGNTWL 117
Query: 198 KVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIV----- 252
+A+ IL++ I + G + S+ + I IV + + +II+
Sbjct: 118 TY-----------GIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVL 166
Query: 253 ---GFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309
G + + F P G GVF +V WS+ GF+ A ++EE KK RD+P L
Sbjct: 167 ALGGGFNLLPNSWTTFFPSGWPGVFLGLLIVLWSFGGFESAANVSEEVKK--RDVPKALF 224
Query: 310 GSMCMITAVYCLMALALTMMVKYTEI----DMNAAYSIAFRQIGMNWAKYLVSVCALKGM 365
+ ++ +Y L+ + +V EI ++ + ++ F +G W +V + +
Sbjct: 225 IGLLIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSL 284
Query: 366 TTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF----- 420
++ + +R +AR ++P +FA V+ K +P+ A +L LS I+ L
Sbjct: 285 LGAVNTAIVASSRVLEALARDGVLPKFFAKVN-KFGSPVRALILTAILSLILLLLFLLSG 343
Query: 421 SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITA 480
++ N L S+ + L +++L+ I LL+ R D+ P+ + L ++ + +
Sbjct: 344 AAYNALLSLSAVGYLLVYLLLIIGLLILRKKRPDL-PRIKGRWPVAILAILFILFLLVAL 402
Query: 481 FWNSNG 486
F+ G
Sbjct: 403 FFPPGG 408
|
Length = 425 |
| >gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-21
Identities = 102/472 (21%), Positives = 208/472 (44%), Gaps = 38/472 (8%)
Query: 52 NRLFSRSTDATELITLQQESKQP--LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHA 109
N FS S + + + L+K +T + G+++GSGIFV + + K+A
Sbjct: 15 NYQFSSSGRKKSVSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFV-SPKGVLKNA 73
Query: 110 GPAIVLSYL---ASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILL 166
G ++ L+ + G+ +++ A Y E IP +GG ++++ G +A++ + +
Sbjct: 74 G-SVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILEVFGPLLAFLR---LWI 129
Query: 167 EAVV----GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNG 222
E +V A A +++ Y+ L DC + + VAVL +L+
Sbjct: 130 ELLVIRPGSQAVNALNFAIYI----------LTPVFPDCEVPEWAI-RLVAVLCVLLLTL 178
Query: 223 IAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH---GKTTNLDPFLPY-GTE----GVF 274
+ + ++ + I + ++ +II G+V G +L+P + GTE G+
Sbjct: 179 VNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIV 238
Query: 275 EAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE 334
A W+Y G++ + + EE K P R +PI ++ SM ++T +Y L +A ++ E
Sbjct: 239 LAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEE 298
Query: 335 IDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA 394
+ + A ++ F + + + + S+ +R R +P +
Sbjct: 299 LLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLS 358
Query: 395 LVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIA-LLVRRYYEK 453
++H K TP+ + L+V TL+ ++ + L ++ SF+ +F +A+A LL RY
Sbjct: 359 MIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFA-NWLFNALAVAGLLWLRYKRP 417
Query: 454 DVTPKNNLVKFLVCLTVVVASSIGITAFW---NSNGRGWIGYVVTIAPWFLG 502
++ + F ++ + I + + G G+I + + +F G
Sbjct: 418 EMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFG 469
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501 |
| >gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 2e-21
Identities = 99/392 (25%), Positives = 156/392 (39%), Gaps = 56/392 (14%)
Query: 85 TWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSA-------FCYTEFAVE 137
TW +G VG +VI+G A + G A + ++ LL A F E +
Sbjct: 11 TWQLWGIGVG---YVISGDYAGWNFGLAQG-GWGGFVVATLLVATMYLTFCFSLAELSTM 66
Query: 138 IPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRF 197
IP AGG + F R G + ++A IL+E +A +Y S+ L
Sbjct: 67 IPTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWL--- 123
Query: 198 KVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSC-VIVFVIIV---- 252
A++ +V GI + G ++ L ++ + V+ + VF+ +
Sbjct: 124 --------------AALVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMVPHF 169
Query: 253 ---GFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309
+G T FLP GVF A W + + VA AEETK P RDIP GL+
Sbjct: 170 DSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLI 229
Query: 310 GSMCMITAVYCLMALALTMMV-------KYTEIDMNAAYSIAFRQI--GMNWAKYLVSVC 360
G++ L+ALA ++V + N A I G W V++
Sbjct: 230 GAILT------LLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLV 283
Query: 361 ALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF 420
L G+ S G +R ++RA +P + V+ K + P+ A ++V +
Sbjct: 284 GLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVNRK-KAPVLA-IVVPGVIGFGLSL 341
Query: 421 S---SLNILSSVFSFSTLSIFMLMAIALLVRR 449
+ +L IL SVF + + A L R
Sbjct: 342 TGQTALIILVSVFGAIISYVLSMAAHFTLRIR 373
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442 |
| >gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-20
Identities = 86/407 (21%), Positives = 164/407 (40%), Gaps = 62/407 (15%)
Query: 83 DLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVA 141
+ + G V+G+G+FV +G AGPA +L YL +G+ L+ E + PVA
Sbjct: 1 HVLMIALGGVIGTGLFVGSGS-VLGQAGPAGALLGYLIAGVVIFLTMLSLGEMSTNGPVA 59
Query: 142 GGSFSFLRVELGDFVAYIAAGNILLE-------AVVGAAGLARSWSSYLASMIDSNNSDL 194
GG +++ LG + + N L + A+ L + W
Sbjct: 60 GGFYAYASRFLGPSLGFATGWNYWLSWIFVIALELTAASILIQFWELVPDIPYL------ 113
Query: 195 LRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF 254
+ G V +++LL+ N + + G + + W + I +I F+I+
Sbjct: 114 -------WVWGA-----VFIVLLLIINLVGVKGYGEAEF--WFALIKVIAIIGFIIVGFI 159
Query: 255 V---------------HGKTTNLDPFL----PYGTEGVFEAAAVVYWSYTGFDMVATMAE 295
+ +G N P F + ++++TG ++V A
Sbjct: 160 IPLSGGGPNDGAYLGYNGGKNNFPPGFASPGTGSFANFFSVFVIAFFAFTGIELVGNAAG 219
Query: 296 ETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA-------YSIAFRQI 348
E K P + IP ++ ++ IT Y L LA+ ++V + + + A + I F+ +
Sbjct: 220 EVKNPRKAIPKAILQAVWRITIFYILSLLAIGLLVPWNDPGLLADSASAASPFVIFFKSL 279
Query: 349 GMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATL 408
G++ L++ L ++ +R +AR + P + K+ P+ A L
Sbjct: 280 GISGLAPLINAVILTAALSAANSSLYSGSRVLYALARDGLAPKFLK-KVDKSGVPLRAIL 338
Query: 409 LVTTLSAIIALFSSL------NILSSVFSFSTLSIFMLMAIALLVRR 449
L T +S + L +SL N L ++ L ++ L++++ L R
Sbjct: 339 LSTAISLLAVLLASLNPAIVFNFLLAISGLIGLIVWGLISLSHLRFR 385
|
Length = 473 |
| >gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 6e-20
Identities = 95/459 (20%), Positives = 185/459 (40%), Gaps = 63/459 (13%)
Query: 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAI-VLSYLASGLSALLSAF 129
Q LQ+ L +W + + G+ VGSGIFV G+ AK P + VL+++ GL +
Sbjct: 2 GSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMC 61
Query: 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDS 189
Y E + P G + +L+ +A+++ W+S+ A+ D+
Sbjct: 62 VYAELSTAYPENGADYVYLKNAGSRPLAFLSG-----------------WASFWAN--DA 102
Query: 190 NNSDLLRFKVDCFADGFNLLDP-----VAVLILLVCNGIAMSGTRRSSWLNWISSIVSSC 244
+ ++ + +DP +A +++ + + + + + I +
Sbjct: 103 PSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSVEGGA--AFQTLITIAK 160
Query: 245 VIVFVIIVG----FVHGKTTNLDPFLPYGTEGVFEA----AAVVYWSYTGFDMVATMAEE 296
+I F I++G + + G G F A + WSYTG + M E
Sbjct: 161 IIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGE 220
Query: 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN-AAYSIAFRQIGM--NWA 353
K P + +P L+GS ++ +Y L+AL ++ ++ + ++ + S A I + A
Sbjct: 221 IKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTA 280
Query: 354 KYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLL---- 409
V++ A+ + SL + Q R +A+ ++ F VHPK TP + +L
Sbjct: 281 GIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGAL 340
Query: 410 ------VTTLSAIIALFSSLNILSSVFSFSTLSI---------------FMLMAIALLVR 448
V+ L++++ F+ + + +F ++ F LM +
Sbjct: 341 GIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTPAFGLMTTLAIAS 400
Query: 449 RYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGR 487
T + L+C +V+A+ + AFW R
Sbjct: 401 SLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439
|
Length = 445 |
| >gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 90/405 (22%), Positives = 158/405 (39%), Gaps = 34/405 (8%)
Query: 84 LTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAG 142
LT L GS++GSGIF + A A+++ ++ +G+ L AF + A + P + G
Sbjct: 14 LTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG 73
Query: 143 GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCF 202
G +++ R G ++ +++ L A +G A S L + F
Sbjct: 74 GIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALG------------YFFPLF 121
Query: 203 ADGFNLLDPVAVLILL-VCNGIAMSGTRRSSWLNWISSI-VSSCVIVFVIIVGFV---HG 257
G + + +LL V + + G R+++++N I++I + +F+II F
Sbjct: 122 GSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLDL 181
Query: 258 KTTNLDPFLPYGTEGVFEAA----AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313
T + VF V W + G + + K D+ V
Sbjct: 182 FTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK-SDVGKATVLGTL 240
Query: 314 MITAVYCLMALALTMMVKYTEIDMNAAYSIA--FRQIGMNWAKYLVSVCALKGMTTSLLV 371
+Y L+ L ++ E+ S+A I W L+S+ + + SLL
Sbjct: 241 GALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLS 300
Query: 372 GSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVT---TLSAIIALFSS--LNIL 426
++ A A+ + P F V+ K P A LL L ++ L +S N+L
Sbjct: 301 WTMLAAEVPFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVL 359
Query: 427 SSVFSFSTLSIFMLMAIALLV---RRYYEKDVTPKNNLVKFLVCL 468
S+ L ++L A LL Y K K +V + C+
Sbjct: 360 VSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACV 404
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions [Transport and binding proteins, Amino acids, peptides and amines]. Length = 473 |
| >gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 8e-13
Identities = 94/490 (19%), Positives = 194/490 (39%), Gaps = 73/490 (14%)
Query: 68 QQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLS 127
Q+ +Q L++ L + + G +G+G+F+ +G A AGP+++L+YL +G+ L
Sbjct: 4 QKNEEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGS-AIAMAGPSVLLAYLIAGIFVFLI 62
Query: 128 AFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGN-ILLEAVVGAAGLARSWSSYLASM 186
E V PV+G + R LG + ++ +VG A L + YL
Sbjct: 63 MRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELT-AIGIYLQFW 121
Query: 187 IDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL-NW-----ISSI 240
F D + ++L+ + + + L W +++I
Sbjct: 122 ---------------FPDVPQWV-FALAAVVLL-LAVNLISVKVFGELEFWFALIKVAAI 164
Query: 241 VSSCVIVFVIIVGFVHGKT--------TNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVAT 292
++ V+ V++ G G + F P G G A +V +++ G ++V
Sbjct: 165 IAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGI 224
Query: 293 MAEETKKPSRDIP-----------IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA- 340
A E K P + IP I VGS+ +I ++Y + +I + +
Sbjct: 225 TAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLY-----------PWNQIGEDGSP 273
Query: 341 YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKT 400
+ F IG+ +A +++ L ++L G +R +A+ P FA + K
Sbjct: 274 FVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KR 332
Query: 401 QTPINATLLVTTLSAIIALFSSLNILSSVFSF-STLSIFMLMAIALLV----------RR 449
P+NA +L++ + ++ + + + VF ++ S L+ + L++ +
Sbjct: 333 GVPVNA-ILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKP 391
Query: 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALL 509
K + K L F LT+ + + + ++ + R + + W + L+
Sbjct: 392 AEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISL---LVGPVWLVLLGIGYLV 448
Query: 510 PKQRVPKLWG 519
+++ +
Sbjct: 449 KRKKKARKAR 458
|
Length = 462 |
| >gnl|CDD|206077 pfam13906, AA_permease_C, C-terminus of AA_permease | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-12
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 518 WGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHAT 568
+ VPLVP+LP+LSI +N++L+ L L ++RF + + L+ Y G+ +
Sbjct: 1 FKVPLVPFLPALSILINIYLMVQLDALTWIRFAVWLLIGLLIYFGYGIRHS 51
|
This is the C-terminus of AA-permease enzymes that is not captured by the models pfam00324 and pfam13520. Length = 51 |
| >gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 94/408 (23%), Positives = 169/408 (41%), Gaps = 34/408 (8%)
Query: 85 TWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGS 144
T + G+++GSG+F++ A G + +L + + AL + Y + + P GGS
Sbjct: 16 TLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGS 73
Query: 145 FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFAD 204
+++ R G F+ Y L +G + YL+ D L + C
Sbjct: 74 YAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDPLVLTITC--- 129
Query: 205 GFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVG-FVHGKTTNLD 263
V VL + V + + G + + + ++++++ IV + + G F T +
Sbjct: 130 -------VVVLWIFV--LLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMA 180
Query: 264 PFLPYGTE---GVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYC 320
+ G + V WS+ G + + A K P R++PI +G + + Y
Sbjct: 181 AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYV 240
Query: 321 LMALALTMMVKYTEIDMNAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARY 379
L + A+ M+ + ++A+ + A R + A +VS CA G SL +L +
Sbjct: 241 LSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT 300
Query: 380 TTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLN--------ILSSVFS 431
A + PP FA V+ K TP+ L+V L I SS++ ++SSV
Sbjct: 301 AKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIF-QLSSISPNASKEFGLVSSVSV 358
Query: 432 FSTLSIFMLMAIALLVRRY----YEKDVTPKNNLVKFLVCLTVVVASS 475
TL ++ ALL+ + + L+ F+ C+ VV S
Sbjct: 359 IFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTLIAFVYCIWAVVGSG 406
|
Length = 445 |
| >gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 84/402 (20%), Positives = 158/402 (39%), Gaps = 52/402 (12%)
Query: 69 QESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSA 128
+ ++ + L L G V+G+G+F TG +L+YL L L
Sbjct: 6 SQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVM 65
Query: 129 FCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188
C E +V +P G + LG Y A L +W+ L S +
Sbjct: 66 QCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWL-----------TWTVALGSSLT 114
Query: 189 SNNSDLLRFKVDCFADGFNLL-----DPVAVLILLVCNGIAMSGTRRSSWLN----WISS 239
A GF + PV LL C I + + W S
Sbjct: 115 --------------AAGFCMQYWFPQVPVWPWCLLFCALIFGLNVVSTRFFAEGEFWFSL 160
Query: 240 IVSSCVIVFVI-----IVGFVHGKTTNLDPFL---------PYGTEGVFEAAAVVYWSYT 285
I ++ F++ I GF+ + + P L P+G + V ++++
Sbjct: 161 IKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFS 220
Query: 286 GFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIA 344
G +++ A ET+ P++ IP+ + ++ + + L L ++ + + + + +
Sbjct: 221 GTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLV 280
Query: 345 FRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPI 404
F ++G+ +A + + L + ++ G R ++ +P FA + K P+
Sbjct: 281 FEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPL 339
Query: 405 NATLLVTTLSAIIALFSSLNILSSVF-SFSTLSIFMLMAIAL 445
A L V+ L ++ALFSS+ +VF + S +S F ++A+ L
Sbjct: 340 TA-LSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWL 380
|
Length = 471 |
| >gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 82/368 (22%), Positives = 150/368 (40%), Gaps = 37/368 (10%)
Query: 109 AGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEA 168
GPA ++ + LL A + E A P++G + + R G+ + + A +++
Sbjct: 45 GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMGGEVIGWFAGWFMIIAQ 104
Query: 169 VVGAAGLARSWSSYLASMIDSNN--SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226
+V AA A + L ++ + A LL V +++ V N I +
Sbjct: 105 IVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGV- 163
Query: 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSY-- 284
W++ +++I +C IV V+ V V P + + T V A+ Y ++
Sbjct: 164 -----EWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDT-SVTGASPGYYGAFLV 217
Query: 285 ---------TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI 335
GF ++EETK P R P ++ ++ + LM L M
Sbjct: 218 SGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTD 277
Query: 336 DMNAAYSIAF---RQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP-- 390
AA + + + W L+ A+ + +L + + G +R +AR +P
Sbjct: 278 GRLAAEGLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQTAG-SRLMFSMARDGKLPAS 336
Query: 391 PWFALVHPKTQTPINATLLVTTLSAII--------ALFSSLNILSSVFSFSTLSIFMLMA 442
+ VHP+T TPI ++++ L I ALF++ L+SV ++L+
Sbjct: 337 AQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFAT---LASVCIVLIYLAYLLVT 393
Query: 443 IALLVRRY 450
+ LL+RR
Sbjct: 394 VPLLLRRL 401
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. Length = 475 |
| >gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 9/176 (5%)
Query: 282 WSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM--ITAVYCLMALALTMMVKYTEIDMNA 339
WS TG+D A MAEE + P P ++G++ + +T + L +M + I
Sbjct: 228 WSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTT 287
Query: 340 AYSIA---FRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFA 394
IA + +G + L + +R +R +P P ++
Sbjct: 288 GQPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWS 347
Query: 395 LVHPKTQTPINATLLVTTLSAIIALFS--SLNILSSVFSFSTLSIFMLMAIALLVR 448
V+P+TQ P+NA L +I L S ++FS T+++ + I ++ +
Sbjct: 348 RVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICK 403
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482 |
| >gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-08
Identities = 93/463 (20%), Positives = 172/463 (37%), Gaps = 79/463 (17%)
Query: 70 ESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSA 128
+ L++ L L + G +G+G+FV +G +A AGPA ++++YL G+
Sbjct: 37 QQGGELKRSLKSRHLQMIAIGGAIGTGLFVGSG-KALSQAGPAGLLIAYLIIGIMVYFVM 95
Query: 129 FCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLAR--SWSSYLASM 186
E AV PV+G F Y A + A A G +W+ L
Sbjct: 96 QSLGELAVFYPVSGS-----------FSTY--ATRFVDPAFGFALGWNYWLNWAVTLPLE 142
Query: 187 IDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS----WLNWISSIVS 242
+ + + + + F D +A+ ++L+ + + G + W + I +
Sbjct: 143 LTAASLVIQYW----FPDTVPPWIWIAIFLVLIF-LLNLFGVKGFGETEFWFSSIKVL-- 195
Query: 243 SCVIVFVIIV-----------GFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVA 291
+I F+I+ G++ + G +G + +S++G ++V
Sbjct: 196 -TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVG 254
Query: 292 TMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID------MNAAYS--- 342
A E++ P + IP + I Y L + ++V Y + A S
Sbjct: 255 LAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFV 314
Query: 343 IAFRQIG-------MNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFAL 395
IA + G MN A L SV L + L S R +A+ P FA
Sbjct: 315 IAIKNAGIPVAASIMN-AVILTSV--LSAANSGLYASS----RMLYSLAKQGKAPKIFAK 367
Query: 396 VHPKTQTPINATLLVTTLSAIIALFSSL-------NILSSVFSFSTLSIFMLMAI----- 443
V + P+ A LLVT L ++A +S N L ++ S + + +
Sbjct: 368 VD-RRGVPLVA-LLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRF 425
Query: 444 --ALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNS 484
A+ + ++ K+ + +++ I I + +
Sbjct: 426 RRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVA 468
|
Length = 541 |
| >gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 87/400 (21%), Positives = 152/400 (38%), Gaps = 50/400 (12%)
Query: 70 ESKQPLQKC--LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLS 127
+S+ L+ L +T L V+G+G+FV +G A AGPA +L+YL +GL +
Sbjct: 3 QSQSGLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGS-AIASAGPAALLAYLLAGLLVVFI 61
Query: 128 AFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG--------NILLEAVVGAAGLAR-- 177
E AV P G ++ +G + + I LEA+ A L
Sbjct: 62 MRMLGEMAVANPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWF 121
Query: 178 ----SWSSYLASMIDSNNSDLLRFK-VDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232
W L I ++L K F F L+ +A++ ++ +A+ G S
Sbjct: 122 PDIPLWLFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGS 181
Query: 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVAT 292
++ S++ F P G V A V +S+ G ++V
Sbjct: 182 EVSGFSNLTGK-------------------GGFFPNGIGAVLLAILVTMFSFMGTEIVTI 222
Query: 293 MAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNA--AYSIAFRQIGM 350
A E+ P + I + I Y + ++ + ++ +Y +G+
Sbjct: 223 AAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGI 282
Query: 351 NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLV 410
AK ++ L + + L +R +A P F ++ K P+ A L
Sbjct: 283 PHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLAS 341
Query: 411 TTLSAIIALFSSLNILSSVFSFSTLSIFMLM---AIALLV 447
T FS L ++ + F+ + +F++ AIALLV
Sbjct: 342 T-------FFSFLTVVVNYFAPDKVFLFLVNSSGAIALLV 374
|
GABA permease (gabP) catalyzes the translocation of 4-aminobutyrate (GABA) across the plasma membrane, with homologues expressed in Gram-negative and Gram-positive organisms. This permease is a highly hydrophobic transmembrane protein consisting of 12 transmembrane domains with hydrophilic N- and C-terminal ends. Induced by nitrogen-limited culture conditions in both Escherichia coli and Bacillus subtilis, gabP is an energy dependent transport system stimulated by membrane potential and has been observed adjacent and distant from other GABA degradation proteins. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 452 |
| >gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 10/190 (5%)
Query: 270 TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMM 329
G+F A V++W + G + A +A E K P RD P L+ + + VY + +
Sbjct: 176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHF 235
Query: 330 VKYTE-IDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHM 388
Y + A+ F Q+ +A +++ V S+ + + AR AR
Sbjct: 236 PAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGR 295
Query: 389 IPPWFALVHPKTQTPINATLLVTTLSAI-IALFSSLNILSSVFSFSTLSIF-------ML 440
P + A + + P+NA V A+ I L +L + IF ML
Sbjct: 296 PPSYLARLSAR-GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCML 354
Query: 441 MAIALLVRRY 450
A LL RY
Sbjct: 355 AACKLLKGRY 364
|
Length = 410 |
| >gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 76/369 (20%), Positives = 143/369 (38%), Gaps = 35/369 (9%)
Query: 87 LCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFS 146
+ G +G+G+F+ G + AGPA+ L YL GL + E + P +G S
Sbjct: 38 IAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVS 96
Query: 147 FLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGF 206
+ R LG+ AY+A + +W+ + ++D L F
Sbjct: 97 YAREFLGEKAAYVAGWMYFI-----------NWA--MTGIVDITAVALYMHYWGAFGGVP 143
Query: 207 NLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV--------HGK 258
+ A+ L + + M G + + + + +++ IV ++VG V G
Sbjct: 144 QWV--FALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGN 201
Query: 259 TTNLD------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312
TT F P+G V +++ +MV T A E K P +P + +
Sbjct: 202 TTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVI 261
Query: 313 CMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371
I Y + L M++ ++ + + F ++G+ + ++++ L +SL
Sbjct: 262 WRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS 321
Query: 372 GSLGQARYTTQIARAHMIPPWFALVHPKTQTP---INATLLVTTLSAIIALFSSLNILSS 428
G R +A P + A + + P I ATL+V + + +
Sbjct: 322 GLYCTGRILRSMAMGGSAPSFMAKM-SRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEI 380
Query: 429 VFSFSTLSI 437
V +F++L I
Sbjct: 381 VLNFASLGI 389
|
Length = 499 |
| >gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 48/248 (19%), Positives = 106/248 (42%), Gaps = 26/248 (10%)
Query: 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFE---------AAA 278
T+ + W + +I+ + ++I+G + T + +P + F AA
Sbjct: 146 TKVAKWGGIVGTIIPA---AILVILGISYLLTGG-ESQIPLRWDDAFPDFTNFDNVVLAA 201
Query: 279 VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN 338
++ Y G +M A ++ P ++ PI ++ + ++ L LA+ ++ +I +
Sbjct: 202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLT 261
Query: 339 ----AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA 394
A+ AF G++W +++ G+ ++ G + +A+A +P +F
Sbjct: 262 QSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQ 321
Query: 395 LVHPKTQTPINATLL----VTTLSAIIALFSSL----NILSSVFSFSTLSIFMLMAIALL 446
+ K PI+ + V+ LS + + S+ ILS + L +++LM + +
Sbjct: 322 KTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAI 380
Query: 447 VRRYYEKD 454
RY + D
Sbjct: 381 YLRYSQPD 388
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. Length = 474 |
| >gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 84/399 (21%), Positives = 155/399 (38%), Gaps = 51/399 (12%)
Query: 68 QQESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLS 127
Q+ + L++ L + + G +G+G+F + + AGP I+L Y +G A L
Sbjct: 3 GQQHGEQLKRGLKNRHIQLIALGGAIGTGLF-LGSASVIQSAGPGIILGYAIAGFIAFLI 61
Query: 128 AFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNI-LLEAVVGAAGLAR--------- 177
E VE PVAG F G F + + N +L +V A L
Sbjct: 62 MRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWY 121
Query: 178 ----SWSSYLASMIDSNNSDLLRFKVDCFAD---GFNLLDPVAVLILLVCNGIAMSGTRR 230
+W S + N +L KV F + F ++ +AV+ +++ G
Sbjct: 122 PEIPTWVSAAVFFVVINAINLTNVKV--FGEMEFWFAIIKVIAVVAMIIFGG-------- 171
Query: 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL---DPFLPYGTEGVFEAAAVVYWSYTGF 287
WL + + G +NL FLP+G G+ A++ +S+ G
Sbjct: 172 --WLLFSGN-------------GGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGL 216
Query: 288 DMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA-YSIAFR 346
++V A E P + IP + I Y L ++ +T + + + + + F
Sbjct: 217 ELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFH 276
Query: 347 QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINA 406
++G + +++ L + +R +A+ P A V K P+N
Sbjct: 277 ELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNT 335
Query: 407 TLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIAL 445
L+ ++A+ L +N L+ +F L ++ A+ +
Sbjct: 336 ILVSALVTALCVL---INYLAPESAFGLLMALVVSALVI 371
|
Length = 456 |
| >gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 74/373 (19%), Positives = 147/373 (39%), Gaps = 44/373 (11%)
Query: 70 ESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAF 129
+ L + L + + G +G+G+F+ G A + AGPA++L Y +G+ A L
Sbjct: 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIG-PAIQMAGPAVLLGYGVAGIIAFLIMR 72
Query: 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNI-LLEAVVGAAGLAR----------- 177
E VE PV+G F G F +++ N ++ +VG A L
Sbjct: 73 QLGEMVVEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD 132
Query: 178 --SWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM----SGTRRS 231
+W A I N +L+ ++ + + L V +I ++ G+ + G ++
Sbjct: 133 VPTWIWAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKA 192
Query: 232 SWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVA 291
S N + +G F G G+ + AV+ +S+ G +++
Sbjct: 193 SIDNL-----------------WRYGG------FFATGWNGLILSLAVIMFSFGGLELIG 229
Query: 292 TMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA-YSIAFRQIGM 350
A E + P + IP + + I Y + L + + E+ N++ + + F +
Sbjct: 230 ITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDS 289
Query: 351 NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLV 410
N ++ L + G +R ++ P + V + PIN+ +L
Sbjct: 290 NVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTRV-SRRGVPINSLMLS 348
Query: 411 TTLSAIIALFSSL 423
+++++ L + L
Sbjct: 349 GAITSLVVLINYL 361
|
Length = 458 |
| >gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 82/378 (21%), Positives = 151/378 (39%), Gaps = 42/378 (11%)
Query: 84 LTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAG 142
LT L GS++GSGIF + A A A+++ ++ +G+ L AF + A + P + G
Sbjct: 8 LTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG 67
Query: 143 GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCF 202
G +S+ + G F+ +I+A L A +G Y + + L + F
Sbjct: 68 GVYSYAKAGFGPFMGFISAWGYWLSAWLGNVA-------YATLLFST-----LGYFFPIF 115
Query: 203 ADGFNLLDPVAVLILLVC-NGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--- 258
G N + +LL C + + + G ++++N I++I + I++G K
Sbjct: 116 GGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDT 175
Query: 259 -------TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS---RDIPIGL 308
N L V V W + G + + ++ +K S + IGL
Sbjct: 176 FTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIGL 235
Query: 309 VGSMCMITAV----YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKG 364
+G + + V Y +M A +K N + + + W L+++ +
Sbjct: 236 IGVLAIYVLVSVLSYGIMTQAQLAGLK------NPSMAYVLEHMVGTWGAVLINIGLIIS 289
Query: 365 MTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAI---IALFS 421
+ + L +L A +A+ ++P +F + P NA L L I LFS
Sbjct: 290 ILGAWLSWTLLPAEIPLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFS 348
Query: 422 SLNILSSVFSFSTLSIFM 439
+ S +T +I +
Sbjct: 349 E-QAYNFAISLATSAILV 365
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2 [Transport and binding proteins, Amino acids, peptides and amines]. Length = 468 |
| >gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 5e-05
Identities = 91/441 (20%), Positives = 175/441 (39%), Gaps = 53/441 (12%)
Query: 84 LTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGG 143
LT L +++GSGI ++ A+ G ++S+L + + A+ A+ + + +GG
Sbjct: 11 LTILTAVNMMGSGIIMLPTNLAQ--VGTMSIISWLVTAVGAMALAWAFARAGMYSSKSGG 68
Query: 144 SFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFA 203
+ G ++A + V+ A +A S Y A ++ ++
Sbjct: 69 MGGYAEYSFGKAGNFMANYTYGVSLVIANAAIAISAVGYGAELLGAH------------- 115
Query: 204 DGFNLLDPVAV-----LILLVCNGIAMSGTRRSSWLNWISSIVSSCVI---VFVIIVGFV 255
L PV + +L + + G R + ISS VI V + I+G+
Sbjct: 116 -----LSPVQIALATIGVLWIATVLNFGGARITGQ---ISSFTVWGVIIPVVGISIIGWF 167
Query: 256 ----HGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGS 311
+ +P GV + ++ W++ G + + + P +++PI ++G
Sbjct: 168 WFSGTLYADSWNPHHAGFFSGVGSSISITLWAFLGLESACANTDVVENPKKNVPIAVLGG 227
Query: 312 MCMITAVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLL 370
+Y + + +V E+ + NA + +AF Q+ V + M S
Sbjct: 228 TIGAAVMYIISTNVIAGIVPNMELANSNAPFGLAFSQM----FNPTVGKIVMGLMVISCF 283
Query: 371 VGSLGQARYTTQIARAHMIPPWFALVHPKT---QTPINATLLVTTLSAIIALFSSLNILS 427
LG ++ R+ +F + KT TP+ L++T L +++AL + LS
Sbjct: 284 GSLLGWQFTIAEVFRSSADEGYFPKIFSKTIGNGTPLIGMLIITILQSLLALMTISPSLS 343
Query: 428 SVFSF------STLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAF 481
F+ T I ++++A L +V PK V + VA+ + A
Sbjct: 344 KQFTILVNLAVVTNIIPYILSMAALKTMQKVANVPPKGAKVTNFI---AFVAALYSLYAL 400
Query: 482 WNSNGRGWI-GYVVTIAPWFL 501
++S + G +VT A W L
Sbjct: 401 YSSGEEAMLYGSIVTFAGWTL 421
|
Members of this protein family are putrescine-ornithine antiporter. They work together with an enzyme that decarboxylates ornithine to putrescine. This two-gene system has the net effect of removing a protein from the cytosol, providing transient resistance to acid conditions. Length = 430 |
| >gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 53/253 (20%), Positives = 103/253 (40%), Gaps = 36/253 (14%)
Query: 69 QESKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSA 128
ESK L++ L+ + ++ GS +G+G+F + +A K AGP+++L+Y+ G++A +
Sbjct: 1 MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSA-DAIKMAGPSVLLAYIIGGVAAYIIM 59
Query: 129 FCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188
E +V P A + + LG YI E ++ A ++ Y+
Sbjct: 60 RALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVW-- 117
Query: 189 SNNSDLLRFKVDCFADGFNLLDPVAVL-ILLVCNGIAMSGTRRSSWLNWISSIVSSCVIV 247
F + + VL ++L+ + + + L + S I+
Sbjct: 118 -------------FPT---VPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATII 161
Query: 248 FVIIVGF---------------VHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVAT 292
+I+ G +H +N F G G+ + +V ++Y G +++
Sbjct: 162 IMIVAGIGIIIWGIGNGGQPTGIHNLWSN-GGFFSNGWLGMVMSLQMVMFAYGGIEIIGI 220
Query: 293 MAEETKKPSRDIP 305
A E K P + IP
Sbjct: 221 TAGEAKDPEKSIP 233
|
Length = 457 |
| >gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 7e-04
Identities = 85/378 (22%), Positives = 147/378 (38%), Gaps = 42/378 (11%)
Query: 87 LCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFS 146
L V+G+ +FV A AGPA++L+YL +GL ++ E AV P G +
Sbjct: 2 LSIAGVIGASLFV-GSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFST 60
Query: 147 FLRVELGDFVAYIAAG--------NILLEAVVGAAGLAR------SWSSYLASMIDSNNS 192
+ +G + Y I LEA + A L W L + S
Sbjct: 61 YADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGS 120
Query: 193 DLLRFK-VDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVII 251
+LL K F L +A+L + +A+SG + ++ IS +
Sbjct: 121 NLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRL----------- 169
Query: 252 VGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGS 311
+ G F+P G V A + +S+ G ++V A E+ P + I
Sbjct: 170 --WDSGG------FMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSV 221
Query: 312 MCMITAVYCLMALALTMMVKYTEIDMNA--AYSIAFRQIGMNWAKYLVSVCALKGMTTSL 369
+ I+ Y + ++ + + A +Y + + AK ++ L +T+ L
Sbjct: 222 IWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCL 281
Query: 370 LVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSV 429
+R ++R P ++ +++TP A LL +T +A + + + + V
Sbjct: 282 NSALYTASRMLYSLSRRGDAPAVMGKIN-RSKTPYVAVLL-STGAAFLTVVVNYYAPAKV 339
Query: 430 FSFSTLSIFMLMAIALLV 447
F F S AIALLV
Sbjct: 340 FKFLIDSS---GAIALLV 354
|
Length = 446 |
| >gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 88/394 (22%), Positives = 165/394 (41%), Gaps = 51/394 (12%)
Query: 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAF 129
L++ L LT + G +G+G+FV +G + AGP +LSY+ GL
Sbjct: 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMT 67
Query: 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASM-ID 188
E A +PV+G SF+ G +E G A W ++ ++ +D
Sbjct: 68 SLGELAAYMPVSG-SFA-------------TYGQNYVEEGFGFALGWNYWYNWAVTIAVD 113
Query: 189 SNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVF 248
+ L+ G+ + + + ++ + N I++ G + + W S I + VIVF
Sbjct: 114 LVAAQLVMSWWFPDTPGW-IWSALFLGVIFLLNYISVRGFGEAEY--WFSLIKVTTVIVF 170
Query: 249 VI-----IVGFVHGK--------TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAE 295
+I I+G G T PF G + A +V +S+ G +++ A
Sbjct: 171 IIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAG-GFAAMIGVAMIVGFSFQGTELIGIAAG 229
Query: 296 ETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM---------NAAYSIAFR 346
E++ P+++IP + I Y L +++++ YT+ + + +++ F+
Sbjct: 230 ESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQ 289
Query: 347 QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINA 406
G+ A +++ L + ++ G R +A P FA + + P NA
Sbjct: 290 HAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKL-SRGGVPRNA 348
Query: 407 TLLVTTLSAIIALFSSLNILSSVFSFSTLSIFML 440
L TT+ A L L+S+F T+ +++L
Sbjct: 349 -LYATTVIA------GLCFLTSMFGNQTVYLWLL 375
|
Length = 489 |
| >gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 58/274 (21%), Positives = 100/274 (36%), Gaps = 47/274 (17%)
Query: 84 LTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG 142
+ + G +G+G+ V +G A GPA +++ Y G E A PV
Sbjct: 9 IQMIALGGTIGTGLLVGSGT-ALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVS 67
Query: 143 GSFS-----FLRVELGDFVAYIAAGN--ILLEA-VVGAAGLARSWSSYLASMIDSNNSDL 194
GSF+ F+ G V + I+L +V A+ + W+
Sbjct: 68 GSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD------------- 114
Query: 195 LRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS-WLNWISSIVSSCVIVFVIIV- 252
KV+ + + V ++I+ N + G + W + I + I+ II+
Sbjct: 115 ---KVN--PAVWIAIFYVFIVII---NLFGVKGYGEAEFWFSSIKILAIIGFIILSIILN 166
Query: 253 -------GFVHGKTTNLDP--FLPYGTEGVFEAAAVV----YWSYTGFDMVATMAEETKK 299
G++ + + DP F G F+ V +S+ G ++VA A E
Sbjct: 167 CGGGPNHGYIGFRYWH-DPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAAN 225
Query: 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYT 333
P + IP + I Y L + +V Y
Sbjct: 226 PRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYN 259
|
[Transport and binding proteins, Amino acids, peptides and amines]. Length = 478 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 100.0 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 100.0 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 100.0 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 100.0 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 100.0 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 100.0 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 100.0 | |
| PRK10655 | 438 | potE putrescine transporter; Provisional | 100.0 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 100.0 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 100.0 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 100.0 | |
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 100.0 | |
| PRK10836 | 489 | lysine transporter; Provisional | 100.0 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 100.0 | |
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 100.0 | |
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 100.0 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 100.0 | |
| KOG1286 | 554 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 100.0 | |
| KOG1287 | 479 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| KOG1289 | 550 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 100.0 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 100.0 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 100.0 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 100.0 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 100.0 | |
| PRK11021 | 410 | putative transporter; Provisional | 100.0 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 100.0 | |
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 100.0 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 100.0 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 100.0 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 100.0 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 100.0 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 100.0 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 100.0 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 100.0 | |
| KOG2082 | 1075 | consensus K+/Cl- cotransporter KCC1 and related tr | 100.0 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.97 | |
| KOG1288 | 945 | consensus Amino acid transporters [Amino acid tran | 99.95 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 99.93 | |
| KOG2083 | 643 | consensus Na+/K+ symporter [Inorganic ion transpor | 99.9 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 99.87 | |
| PHA02764 | 399 | hypothetical protein; Provisional | 99.85 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.84 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.81 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.79 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.78 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.75 | |
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.72 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 99.71 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.66 | |
| PF01235 | 416 | Na_Ala_symp: Sodium:alanine symporter family; Inte | 99.39 | |
| KOG1303 | 437 | consensus Amino acid transporters [Amino acid tran | 99.35 | |
| PLN03074 | 473 | auxin influx permease; Provisional | 99.33 | |
| PTZ00206 | 467 | amino acid transporter; Provisional | 99.29 | |
| TIGR00835 | 425 | agcS amino acid carrier protein. Members of the AG | 99.28 | |
| COG1115 | 452 | AlsT Na+/alanine symporter [Amino acid transport a | 99.26 | |
| KOG1304 | 449 | consensus Amino acid transporters [Amino acid tran | 99.25 | |
| PRK11375 | 484 | allantoin permease; Provisional | 99.18 | |
| PF13906 | 51 | AA_permease_C: C-terminus of AA_permease | 99.1 | |
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 99.03 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 98.87 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 98.87 | |
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 98.75 | |
| COG1953 | 497 | FUI1 Cytosine/uracil/thiamine/allantoin permeases | 98.66 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 98.61 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 98.55 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 98.46 | |
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 98.36 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 98.36 | |
| PF05525 | 427 | Branch_AA_trans: Branched-chain amino acid transpo | 98.36 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 98.36 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 98.35 | |
| PRK00701 | 439 | manganese transport protein MntH; Reviewed | 98.32 | |
| PF01566 | 358 | Nramp: Natural resistance-associated macrophage pr | 98.21 | |
| PRK15433 | 439 | branched-chain amino acid transport system 2 carri | 98.16 | |
| PRK10484 | 523 | putative transporter; Provisional | 98.15 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 98.14 | |
| COG1914 | 416 | MntH Mn2+ and Fe2+ transporters of the NRAMP famil | 98.09 | |
| PRK12488 | 549 | acetate permease; Provisional | 98.08 | |
| KOG1305 | 411 | consensus Amino acid transporter protein [Amino ac | 98.07 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 98.05 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 97.99 | |
| PRK09395 | 551 | actP acetate permease; Provisional | 97.93 | |
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 97.91 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 97.89 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 97.8 | |
| PF02028 | 485 | BCCT: BCCT family transporter; InterPro: IPR000060 | 97.7 | |
| PLN00151 | 852 | potassium transporter; Provisional | 97.46 | |
| PF02705 | 534 | K_trans: K+ potassium transporter; InterPro: IPR00 | 97.29 | |
| COG1114 | 431 | BrnQ Branched-chain amino acid permeases [Amino ac | 97.27 | |
| COG4147 | 529 | DhlC Predicted symporter [General function predict | 96.66 | |
| KOG4303 | 524 | consensus Vesicular inhibitory amino acid transpor | 96.49 | |
| TIGR00842 | 453 | bcct choline/carnitine/betaine transport. properti | 96.32 | |
| PLN00150 | 779 | potassium ion transporter family protein; Provisio | 96.29 | |
| TIGR00794 | 688 | kup potassium uptake protein. Proteins of the KUP | 96.28 | |
| PLN00149 | 779 | potassium transporter; Provisional | 96.05 | |
| PRK10745 | 622 | trkD potassium transport protein Kup; Provisional | 95.94 | |
| PRK09950 | 506 | putative transporter; Provisional | 95.94 | |
| PLN00148 | 785 | potassium transporter; Provisional | 95.59 | |
| COG1292 | 537 | BetT Choline-glycine betaine transporter [Cell env | 95.47 | |
| KOG2466 | 572 | consensus Uridine permease/thiamine transporter/al | 95.31 | |
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 95.29 | |
| PRK09928 | 679 | choline transport protein BetT; Provisional | 94.29 | |
| PF05297 | 381 | Herpes_LMP1: Herpesvirus latent membrane protein 1 | 92.04 | |
| KOG1287 | 479 | consensus Amino acid transporters [Amino acid tran | 91.56 | |
| PRK03356 | 504 | L-carnitine/gamma-butyrobetaine antiporter; Provis | 91.5 | |
| COG3158 | 627 | Kup K+ transporter [Inorganic ion transport and me | 90.27 | |
| COG4145 | 473 | PanF Na+/panthothenate symporter [Coenzyme metabol | 90.18 | |
| TIGR01197 | 390 | nramp NRAMP (natural resistance-associated macroph | 88.5 | |
| KOG2349 | 585 | consensus Na+:iodide/myo-inositol/multivitamin sym | 87.67 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 80.95 |
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-67 Score=559.03 Aligned_cols=497 Identities=36% Similarity=0.602 Sum_probs=409.2
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+++++|+++.+|+++++++.++|+|+|..++.++...+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 45689999999999999999999999999998875558999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCC--CCcchHHHHHHHHHHHHHHhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADG--FNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
+|+.+||++||.+++++....+..+.+.+.|+..+++ .....+.........+ ......++++++++++.+|.+|+|
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~-~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik 181 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLN-KQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVK 181 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999999999988775 2111111000000000 012346778888888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC--------CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD--------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 301 (585)
..+++|++++.+|++.++++++.++.+.+.+|+. ++.|.++.+++.++..++|+|.|+|.+++++||+|||+
T Consensus 182 ~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~ 261 (557)
T TIGR00906 182 ESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ 261 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc
Confidence 9999999999999999988888888776666654 67777888999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 302 r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
||+||+++.++.+++++|++.++++....|+++.+.++|+..+++..+.++...++.++++.+.+++.++.+++.+|++|
T Consensus 262 r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~ 341 (557)
T TIGR00906 262 RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIY 341 (557)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888888999999988888999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC-CC-
Q 007913 382 QIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP-KN- 459 (585)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~-~~- 459 (585)
+|||||.+|++|+|+|||+++|++|+++.++++.++.++.+++.+.++.+++.++.|.+.+++.+++|++++...+ +.
T Consensus 342 amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~ 421 (557)
T TIGR00906 342 AMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKD 421 (557)
T ss_pred HHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 9999999999999999999999999999999999888888899999999999999999999999999987522100 00
Q ss_pred ---------------------c--hhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHH---HHHHHHHhcccccC
Q 007913 460 ---------------------N--LVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPW---FLGTLGMALLPKQR 513 (585)
Q Consensus 460 ---------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 513 (585)
+ ..+.+ ....++..+..+...+......+|...+..++. +.....+...|+.+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (557)
T TIGR00906 422 TDEKDTLDSWVPFTSKSESQSEGFSLRTL-FSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNK 500 (557)
T ss_pred ccccccccccccccccccccccchhHHHH-HHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0 01111 111222222222222221111233222222222 22223334444544
Q ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007913 514 VPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHATYD 570 (585)
Q Consensus 514 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 570 (585)
.+++||+|.+|++|+++++.|++++.+++..+|..+.+|+++|++.|+.|++||+++
T Consensus 501 ~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 501 QKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 589999999999999999999999999999999999999999999999999999874
|
|
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=473.35 Aligned_cols=365 Identities=19% Similarity=0.300 Sum_probs=312.2
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++++||+++.+++.++++|.+||+|+|..++..... +||..+++|+++++++++++.+++||++++|++||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345899999999999999999999999999999877 9998889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||..||++||.++++|....+......+.+...+-. .+ + ...+.++.+++++++.+|++|+|..
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~-~~---------~-----~~~~~~~~~~~~l~~~iN~~gvk~~ 166 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGA-FG---------G-----VPQWVFALAALTIVGTMNMIGVKWF 166 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC---------C-----CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987666655555555543211 10 0 0123567778889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec---ccC--C---CC------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH---GKT--T---NL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~---~~~--~---~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 297 (585)
+++|.+++.+|++.++++++.++.. .+. . ++ .++.|+|+.+++.++..++|+|.|+|.+++++||+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 9999999999988877766554421 110 0 11 23456667777778888999999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007913 298 KKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (585)
Q Consensus 298 k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (585)
|||+|++|||+..++..+.++|++..+++....|++++. .++|+.++++..+.++...++.+..+++.+++.++.+++.
T Consensus 247 knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~ 326 (499)
T PRK15049 247 KDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCT 326 (499)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988875 3579999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRY 450 (585)
Q Consensus 377 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~ 450 (585)
||++|+|||||.+|++|+|+| |+++|++|++++++++.+..++ ..++.+.++.+.+.++.|.+.+++.+++|+
T Consensus 327 sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 327 GRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8899999999988876543222 348999999999999999999999999987
Q ss_pred ccC
Q 007913 451 YEK 453 (585)
Q Consensus 451 ~~~ 453 (585)
+.+
T Consensus 406 ~~~ 408 (499)
T PRK15049 406 AIK 408 (499)
T ss_pred hhh
Confidence 644
|
|
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-55 Score=464.26 Aligned_cols=421 Identities=18% Similarity=0.287 Sum_probs=346.2
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+++||+++.+++++++++.++|+|+|..++..++. +|| +.+++|+++++++++++++++||++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 45899999999999999999999999999999877 887 5899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||.+||.+||.+|+++....+......+.++..+.+ . . ......+++.++++.+|++|+|..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~---------------~~~~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-Q-V---------------PVWPWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c-C---------------cHHHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999998887776666655544333 0 0 012445556677889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec------ccC-------CCC--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH------GKT-------TNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~------~~~-------~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
++++.+++.+|++.++++++.++.. .+. +++ .++.|++..+++.++..++|+|.|+|.+++++||
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 9999999999998877666654321 000 111 2344556667888888999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+||+|||++.++.++.++|++..+++....|.++.. +++|+.++++..+++++..++.+..+++.+++.++.+++
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888887765 457999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.+...++.|++.+++.+++|
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr 390 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFR 390 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 6799999999887655433332 23567888889999999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHH
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSL 529 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 529 (585)
+++++.. ++..+++||.|..|+++.+
T Consensus 391 ~~~~~~~------------------------------------------------------~~~~~~~~~~~~~~~~~~l 416 (471)
T PRK11387 391 RRHLRDG------------------------------------------------------KALSELAYRAPWYPLTPIL 416 (471)
T ss_pred HHHHhcC------------------------------------------------------CCCCCCCccCCCccHHHHH
Confidence 8866432 2234567889999999999
Q ss_pred HHHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHhhcc
Q 007913 530 SIAMNLFLIGSLGYLA-----FLRFIICSAVMLVYYLLVGLH 566 (585)
Q Consensus 530 ~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~y~~~~~~ 566 (585)
+++.+++++....... ....+.+++++++.|.+++|+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 417 GFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9988887776432221 234566677788888766543
|
|
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=453.07 Aligned_cols=363 Identities=19% Similarity=0.314 Sum_probs=316.1
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
+++++||+++.+|+.++++++++|+|+|..++..... +||..+++|+++++++++++++++|+++++|++||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999877 899999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.+||++||.+|+.+....+......+.++..+++.. ....++.+++++.+.+|++|+|.
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~lN~~gv~~ 156 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-----------------PTWIWAAAFFIIINAVNLVNVRL 156 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-----------------cHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999998877777777777777654410 01256777888899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheec---cc------CCC-C--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVH---GK------TTN-L--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~---~~------~~~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
.+++|.+++.+|++.++++++.++.. .+ .++ + .++.|+++.+++.++...+|+|.|+|.+++++||+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 99999999999987776665544321 11 111 1 123456788899999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
||+|++|||+..++..+.++|++..+......|+++... ++|+.+++++.++++...++.+..+++.+++.++.+++.|
T Consensus 237 ~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s 316 (458)
T PRK10249 237 DPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNS 316 (458)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998888888888877653 4799999998888998999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 378 RYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
|++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..|+.+.++.+...++.|.+.+++.+++|++
T Consensus 317 R~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 395 (458)
T PRK10249 317 RMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAA 395 (458)
T ss_pred HHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 7799999999999988766544 2578899999999999999999999998875
Q ss_pred c
Q 007913 452 E 452 (585)
Q Consensus 452 ~ 452 (585)
+
T Consensus 396 ~ 396 (458)
T PRK10249 396 M 396 (458)
T ss_pred H
Confidence 3
|
|
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=450.19 Aligned_cols=421 Identities=18% Similarity=0.292 Sum_probs=351.8
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
.++++||+++.+|+.+++++++||+|+|..++..... +||..+++|++++++.++++++++||++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3557899999999999999999999999999999887 999989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.+||.+||.+|+.+....+....+.+.++..+++.. .......+++++.+.+|++|+|.
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-----------------~~~~~~~~~~~~~~~lN~~gv~~ 145 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-----------------AQWIPALIAVALVALANLAAVRL 145 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----------------chHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999888888888888887765411 01255666778888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheec-----c---c---CCCCC---CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVH-----G---K---TTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~-----~---~---~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.+++|.+++.+|+..++++++.++.. . + .+|+. ++.++|+.++..++..++|+|.|+|.+++.+||
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999988776666544311 1 1 12222 245667888999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+|++|||+..++..+.++|++..+++....|+++.+. ++|+.++++..+.+....++++..+.+.+++.++.+++
T Consensus 226 ~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~ 305 (461)
T PRK10746 226 AKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYS 305 (461)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888999988764 46999999998988888899999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHH---HHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAI---IALF-----SSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~---~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
.||++|+|||||.+|++|+|+| |+|+|++|++++.+...+ +.+. ..++.+.++.+.+.++.|.+++++.++
T Consensus 306 ~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~ 384 (461)
T PRK10746 306 CGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLR 384 (461)
T ss_pred HHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 889999999987644322 1111 247889999999999999999999999
Q ss_pred HHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHH
Q 007913 448 RRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLP 527 (585)
Q Consensus 448 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 527 (585)
+|+++|+. .++++||.|..|+.+
T Consensus 385 ~r~~~~~~---------------------------------------------------------~~~~~~~~~~~p~~~ 407 (461)
T PRK10746 385 FRRAHKAA---------------------------------------------------------IASHPFRSILFPWAN 407 (461)
T ss_pred HHHhcccc---------------------------------------------------------ccCCCCcCCCccHHH
Confidence 99986642 233567888888888
Q ss_pred HHHHHHHHHHHhcC--C---HHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 528 SLSIAMNLFLIGSL--G---YLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 528 ~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
.++++.++.++..+ . ..+....+.++++..+.|+.|++.+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 408 YLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 88877777764433 1 1344455667777888887776544
|
|
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=452.74 Aligned_cols=422 Identities=23% Similarity=0.314 Sum_probs=347.1
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
++++||+++.++.++++++.++|+|+|..++.+....++|. .+++|+++++++++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 56799999999999999999999999999998776635554 78999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 151 ELGDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
.+||.+||+.||..+ .......+..+...++|+....+ .++ .....++.+++++++.+|++|+|
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~-~~~--------------~~~~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP-IDP--------------LLGKFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cch--------------HHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999754 45566677777788888766444 110 01235666777788899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCC-----CCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF-----LPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
..+++|++++.+|++.++++++.++...+.+|+... ...+ +.+++.++...+|+|.|+|.+++++||+|||+||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 999999999999998887777666543333333211 1112 4567888899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQI--GMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (585)
+|||+..++.+++++|++.+++.....|.+++.. ++|+.++++.. .+++...++.+..+++.+++.++.+.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999999999999999888888887653 56888887753 34566677777888889999999999999999
Q ss_pred HHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 007913 381 TQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNN 460 (585)
Q Consensus 381 ~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 460 (585)
|+|||||.+|++|+|+|||+++|++|++++++++.++.+..+++.+.++.+....+.|.+...+.+++|++++
T Consensus 308 ~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~------- 380 (445)
T PRK11357 308 YAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD------- 380 (445)
T ss_pred HHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCC-------
Confidence 9999999999999999999999999999999999888888889999999888889999998888887775521
Q ss_pred hhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhc
Q 007913 461 LVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGS 540 (585)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 540 (585)
.+++||.|..|+++.++++.++++...
T Consensus 381 -----------------------------------------------------~~~~~k~p~~~~~~~~~~~~~~~~~~~ 407 (445)
T PRK11357 381 -----------------------------------------------------YKPLWRTPAFGLMTTLAIASSLILVAS 407 (445)
T ss_pred -----------------------------------------------------CCCCcccCCchHHHHHHHHHHHHHHHH
Confidence 224588888899999998888877542
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 541 ----LGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 541 ----~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
....++...+.++++|+.+|+.+++|++
T Consensus 408 ~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 408 TFVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 2434455668888899999977666543
|
|
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=445.46 Aligned_cols=426 Identities=29% Similarity=0.516 Sum_probs=371.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
+||++|.++.+++.++.++|+|++..++..... +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999988776 8898889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--CCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSN--NSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
..|++.||.+++.+....+..+..+++++..+++.. +.+.+.. ..+.+.......+++++++++.+|++|.|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLT---AKPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhh---cCCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999998877511 1111100 00001111224567788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~ 312 (585)
|++.+++.++++.++++++.++.+.+.+|+.++.|.+..++..++...+|+|.|+|...+++||+|||+|++||+++.+.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~ 236 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSL 236 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHH
Confidence 99999999999988777776666666667777667777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch
Q 007913 313 CMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (585)
Q Consensus 313 ~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~ 391 (585)
.++.++|++..+......|.+++. +++|+..+.++.++++...++.+..+++.+++.++.+.+.||+++++||||.+|+
T Consensus 237 ~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~ 316 (429)
T TIGR00909 237 IVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPG 316 (429)
T ss_pred HHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 999999999999988888877764 3468888888888899999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHH
Q 007913 392 WFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVV 471 (585)
Q Consensus 392 ~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~ 471 (585)
+|+|+|||+++|++|++++++++.++....+++.+.++.+...++.|.+.+++.+++|+|+|+.
T Consensus 317 ~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~---------------- 380 (429)
T TIGR00909 317 SLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDI---------------- 380 (429)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----------------
Confidence 9999999999999999999999988877778999999999999999999999999999875543
Q ss_pred HHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007913 472 VASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFII 551 (585)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (585)
+++||.|..|+++.+.+..++++....++..+....+
T Consensus 381 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (429)
T TIGR00909 381 -------------------------------------------QRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLV 417 (429)
T ss_pred -------------------------------------------CCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3456777788888888888888888888888889999
Q ss_pred HHHHHHHHHHHh
Q 007913 552 CSAVMLVYYLLV 563 (585)
Q Consensus 552 ~~~i~~~~y~~~ 563 (585)
|..+|..+|.+|
T Consensus 418 ~~~~g~~~y~~~ 429 (429)
T TIGR00909 418 WMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHcC
Confidence 999999999754
|
|
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=448.16 Aligned_cols=420 Identities=17% Similarity=0.254 Sum_probs=345.6
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
+||++|.++++++++++++|+|+|..|+... . +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 5789999999999999999999999988754 4 7888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
..||++||.+++.+.......+....+|+...++ ...+.+ ...++.++++++++.+|++|+|..+++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~-~~~~~~------------~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFG-ATLSPV------------QICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchH------------HHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999988777777777788877665 221111 123556677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheecccCCCCC-CCCCcC---hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~ 310 (585)
|++.+..+++.++++.+.++...+.+|+. ++.+.+ +.++..++...+|+|.|+|.+++++||+|||+||+|||++.
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~ 228 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLG 228 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHH
Confidence 99999999888877777665554555543 233333 25677788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCC
Q 007913 311 SMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (585)
Q Consensus 311 ~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~l 389 (585)
+..+++++|++...+.....|++++. +++|+.+++++..+++...++.+..+++.+++.++.+.+.+|+++++||||.+
T Consensus 229 ~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~l 308 (438)
T PRK10655 229 GTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYF 308 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch
Confidence 99999999999998888888887764 35688888888777888888888889999999999999999999999999999
Q ss_pred chhhhccCCCCCchHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchh
Q 007913 390 PPWFALVHPKTQTPINATLLVTTLSAIIALF-------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLV 462 (585)
Q Consensus 390 P~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~ 462 (585)
|++|+|+| |+++|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+|+.+|+
T Consensus 309 P~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~---- 383 (438)
T PRK10655 309 PKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSK---- 383 (438)
T ss_pred hHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcch----
Confidence 99999999 6799999999999887665553 35889999999999999999999999999886654332
Q ss_pred HHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhcCC
Q 007913 463 KFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLG 542 (585)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 542 (585)
||.+ +.++.++.+.+++++...+
T Consensus 384 -------------------------------------------------------~~~~--~~~~~~~~~~~~~~~~~~~ 406 (438)
T PRK10655 384 -------------------------------------------------------AKVA--NFIAFVGALYSFYALYSSG 406 (438)
T ss_pred -------------------------------------------------------hHHH--HHHHHHHHHHHHHHHHHhh
Confidence 2221 2455555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccch
Q 007913 543 YLAFLRFIICSAVMLVYYLLVGLHATYDV 571 (585)
Q Consensus 543 ~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 571 (585)
..+.....+++++|.++|.++.||+..++
T Consensus 407 ~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (438)
T PRK10655 407 EEAMLYGSIVTFLGWTLYGLISPRFELKN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 44555668888999999977666554433
|
|
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=446.17 Aligned_cols=419 Identities=21% Similarity=0.295 Sum_probs=341.0
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+.+++|++|.+++++++++.++|+|+|..++.... .|+..+++|+++++.+++.+++++||++++|++||.|.|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 34578999999999999999999999999988654 3555789999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||.+||++||.+|+.+.............+....++ ..+..+ ...+.+.+++++++.+|++|+|..
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~ln~~gvk~~ 147 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP-ILKDPL------------VLTITCVVVLWIFVLLNIVGPKMI 147 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCcH------------HHHHHHHHHHHHHHHHHHhchHHH
Confidence 9999999999999998887777666666667666554 111111 123566777788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecccCCCCCC-CCC---cChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhH
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDP-FLP---YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIG 307 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~a 307 (585)
+++|++++.++++.++++.+.++...+.+++.+ +.+ .++.++..++...+|+|.|+|.+++++||+|||+|++|||
T Consensus 148 ~~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPra 227 (445)
T PRK10644 148 TRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHH
Confidence 999999999999888777776655444333322 211 2345677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Q 007913 308 LVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386 (585)
Q Consensus 308 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ard 386 (585)
++.++.+++++|++..++.....|++++. +++|+.++++...+++...++.+..+++.+++.++.+...+|++++||||
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ard 307 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999888887765 45799888887777888888888888999999999999999999999999
Q ss_pred CCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007913 387 HMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKN 459 (585)
Q Consensus 387 g~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~ 459 (585)
|.+|++|+|+| |+++|++|++++++++.++.+. ..++.+.++.+.+.++.|.+.+++.+++|+|+++.++
T Consensus 308 g~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~-- 384 (445)
T PRK10644 308 GLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR-- 384 (445)
T ss_pred CCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc--
Confidence 99999999999 5799999999999998776654 2488899999999999999999999998877542111
Q ss_pred chhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHh
Q 007913 460 NLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIG 539 (585)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 539 (585)
|..|+++.++++.+++++.
T Consensus 385 -------------------------------------------------------------p~~~~~~~~~~~~~~~~~~ 403 (445)
T PRK10644 385 -------------------------------------------------------------PAYLAVTLIAFVYCIWAVV 403 (445)
T ss_pred -------------------------------------------------------------cchhHHHHHHHHHHHHHHH
Confidence 2346777788888877777
Q ss_pred cCCHHHHHHHHHHHHHHHHHH-HHhhccccc
Q 007913 540 SLGYLAFLRFIICSAVMLVYY-LLVGLHATY 569 (585)
Q Consensus 540 ~~~~~~~~~~~~~~~i~~~~y-~~~~~~~~~ 569 (585)
..+..+.....++..++.+.| +.++|||++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 434 (445)
T PRK10644 404 GSGAKEVMWSFVTLMVITAFYALNYNRLHKN 434 (445)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 666555555555566666666 445544443
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-53 Score=445.31 Aligned_cols=420 Identities=23% Similarity=0.326 Sum_probs=348.0
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
++++||+++.++.++++++.++| |.+...+..... +||. .++++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56799999999999999999997 777776666655 8885 78899999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||..||++||.+++.+....+.++..+++|+...++ ..+ ....+.+++++++.+|++|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p-~~~----------------~~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFP-VGP----------------GWLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCc----------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988765 110 1256677788889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecccCCCC--------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCC
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL--------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR 302 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r 302 (585)
.++++.++..++++.++++......+.+..|+ .++.+.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999998888766555443333222221 2344556678888999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHh-Cc-HHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 007913 303 DIPIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQI-GM-NWAKYLVSVCALKGMTTSLLVGSLGQARY 379 (585)
Q Consensus 303 ~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 379 (585)
|+|||++.+..++.++|+..........+.+++. .++|+.++++.. ++ .+...++.+..+++.+++.++.+++.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877766666766664 456888888865 32 45667777778888899999999999999
Q ss_pred HHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 007913 380 TTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKN 459 (585)
Q Consensus 380 l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~ 459 (585)
+++|||||.+|++|+|+| |+|+|++|++++++++.++.+..+.+.+.++.+.+.++.|.+.+++++++|+++|+
T Consensus 303 l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~----- 376 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPD----- 376 (442)
T ss_pred HHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----
Confidence 999999999999999999 99999999999999998887777778888999999999999999999999988554
Q ss_pred chhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHh
Q 007913 460 NLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIG 539 (585)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 539 (585)
.+++||.|..|+.+.++++.+++++.
T Consensus 377 ------------------------------------------------------~~rp~~~p~~~~~~~l~~~~~~~~l~ 402 (442)
T TIGR00908 377 ------------------------------------------------------MERPYRTPGGILTPGVALVLACVALV 402 (442)
T ss_pred ------------------------------------------------------CCCCccCCCcchHHHHHHHHHHHHHH
Confidence 34467778788888888887776665
Q ss_pred cC---CHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 007913 540 SL---GYLAFLRFIICSAVMLVYYLLVGLHATYD 570 (585)
Q Consensus 540 ~~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 570 (585)
.+ ++..+....++.++..++|++|+|+|+.+
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 403 TGFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 43 44344445677777788888887766544
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=442.34 Aligned_cols=365 Identities=21% Similarity=0.331 Sum_probs=317.9
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
.++++||+++.+|+.++++++++|+|+|..++..++. +||..+++|++++++.++++++++|+++++|.+||.|+|+++
T Consensus 6 ~~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~ 84 (456)
T PRK10238 6 HGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYK 84 (456)
T ss_pred cchhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4557899999999999999999999999999999887 899989999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||..||++||.+++++....+......+++++.+.+ . .+ .+....+++++++.+|++|+|.
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-~-~~---------------~~~~~~i~~~~~~~lN~~gv~~ 147 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-E-IP---------------TWVSAAVFFVVINAINLTNVKV 147 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c-Cc---------------HHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999988888888876654 1 11 1255667778899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhee---cc--c----CCC---CCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFV---HG--K----TTN---LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~---~~--~----~~~---~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
.+++|.+++.+|+..++++++.++. .. . ..+ ..++.|+++.++..++...+|+|.|+|.+++++||+|
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 9999999999999877655543321 11 0 111 1234566777888888889999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
||+|++|||+..++....+.|+..........|++++.. ++|+.+++++.+.++...++.+..+.+.+++.++.+++.|
T Consensus 228 nP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~s 307 (456)
T PRK10238 228 NPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNS 307 (456)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998887777788887753 5799999999998888899999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 378 RYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
|++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.++.+.+.++.|.+.+++.+++|++
T Consensus 308 R~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 308 RMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6799999999999988766554 4588999999999999999999999999988
Q ss_pred cCC
Q 007913 452 EKD 454 (585)
Q Consensus 452 ~~~ 454 (585)
+++
T Consensus 387 ~~~ 389 (456)
T PRK10238 387 KQE 389 (456)
T ss_pred HHh
Confidence 654
|
|
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=443.91 Aligned_cols=420 Identities=18% Similarity=0.324 Sum_probs=342.3
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
+++++||+++.+++++++++.++|+|+|..++...+. +||..+++|++++++.++++++++|+++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3467899999999999999999999999999998876 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.+||++||.+++.+....+......+.++..+++.. + .....++++++...+|++|+|.
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~l~~~ln~~gv~~ 144 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV------------P-----HWIWVLSVVLIICAVNLMSVKV 144 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------C-----hHHHHHHHHHHHHHHHHccchh
Confidence 9999999999999999998877777777777776655410 0 1244566677889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhee-------cc-cCC---C-C--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFV-------HG-KTT---N-L--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~-------~~-~~~---~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.+++|.+++.+|+..++++++.++. .. +.. + + .++.|+++.+++.++..++|+|.|+|.+++++||
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999999877666544321 11 111 1 1 1244667778889999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+||+|||++.+...+.++|++..+......|.+++.. ++|+..+++..+.++...++.+..+.+.+++.++.+++
T Consensus 225 ~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (457)
T PRK10580 225 AKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFG 304 (457)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888887753 46888888888888888888888899999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.||++++|||||.+|++|+|+| |+++|++|+++++++..+...+ ..++.+.++.+...++.|.+.+++.+++|
T Consensus 305 ~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 305 VGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 6899999999997755443222 34778999999999999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHH
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSL 529 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 529 (585)
+++++.+ .++++||.|..|+.+.+
T Consensus 384 ~~~~~~~--------------------------------------------------------~~~~~f~~~~~~~~~~~ 407 (457)
T PRK10580 384 RRLPPEE--------------------------------------------------------VKALKFKVPGGVATTIG 407 (457)
T ss_pred HHHHhcC--------------------------------------------------------CCCCCcccCCccHHHHH
Confidence 8854321 22335666666666666
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 530 SIAMNLFLIGSL-----GYLAFLRFIICSAVMLVYYLLVGL 565 (585)
Q Consensus 530 ~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~~ 565 (585)
+++.+++++..+ ...+......|++++.+.|..++|
T Consensus 408 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~~ 448 (457)
T PRK10580 408 GLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKRR 448 (457)
T ss_pred HHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666554332 112334567788888888877654
|
|
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=446.63 Aligned_cols=400 Identities=19% Similarity=0.233 Sum_probs=327.6
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
+++++||+++.++++++++|+++|+|+|..++..+.. +||. .+++|+++++++++.+++++||++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 4467899999999999999999999999999999887 8996 8999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
+.+|+.+||++||.+++.+....+........++..+++ +.+ ....+.+++++++.+|++|+|
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~------------~~~-----~~~~~~~~~~~~~~lN~~gv~ 150 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP------------DTP-----GWIWSALFLGVIFLLNYISVR 150 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC------------CCc-----hHHHHHHHHHHHHHHHHHcch
Confidence 999999999999999998877666544444434433332 000 124456667778899999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheec------cc----CCCCC---CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVH------GK----TTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~----~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
..+++|.+++.+|+..++.+++.++.. .+ .+|+. +..++++.+++.+....+|+|.|+|.+++++||
T Consensus 151 ~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 230 (489)
T PRK10836 151 GFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE 230 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999999998776655443321 11 12222 112345566666666678999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc---------cccHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (585)
+|||+||+|||++.++..+.++|++..+.+...+|.++.+ ..+|+..+++..+.++...++.+..+++.++
T Consensus 231 ~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~ 310 (489)
T PRK10836 231 SEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLS 310 (489)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888865431 1368888899888888889999999999999
Q ss_pred HHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHH
Q 007913 368 SLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLM 441 (585)
Q Consensus 368 ~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~ 441 (585)
+.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.++.+...++.|.+.
T Consensus 311 ~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~ 389 (489)
T PRK10836 311 AGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGI 389 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 6799999999999988766554 236778899999999999999
Q ss_pred HHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCccc
Q 007913 442 AIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVP 521 (585)
Q Consensus 442 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (585)
+++.+++|++.+++.+ +.++++||.|
T Consensus 390 ~~a~l~~R~~~~~~~~------------------------------------------------------~~~~~p~~~p 415 (489)
T PRK10836 390 AISHYRFRRGYVLQGH------------------------------------------------------DLNDLPYRSG 415 (489)
T ss_pred HHHHHHHHHHHHhcCC------------------------------------------------------CcCCCCCcCC
Confidence 9999999886432211 1123578899
Q ss_pred ccchHHHHHHHHHHHHHhcCCH
Q 007913 522 LVPWLPSLSIAMNLFLIGSLGY 543 (585)
Q Consensus 522 ~~p~~~~~~~~~~~~~~~~~~~ 543 (585)
..|+.+.++++.+++++....+
T Consensus 416 ~~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 416 FFPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred CccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888775443
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=442.83 Aligned_cols=367 Identities=20% Similarity=0.265 Sum_probs=316.0
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
+.++||+++.+|+.+++++.++|+|+|..++..... +||..+++|++++++.++.+++++||++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999887 8998889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||.+||++||.+++++....+......+.++..+++ .. ..+.++.+++++.+.+|++|+|..
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~-~~----------------~~~~~~~~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP-DI----------------PLWLFSLILTIVLTLTNLYSVKSY 148 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cC----------------cHHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999988888888877654 11 123677788888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec---c----cC---CCC---CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH---G----KT---TNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~---~----~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
+++|.+++.+|++.++++++.++.. . +. .++ .++.|+++.++..++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 9999999999998876666554321 1 11 111 234456777899999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc--cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQ 376 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (585)
||+||+|||+..+.....++|++.........|+++.+ +++|+.++.+..++++...++.+..+++.+++.++.+++.
T Consensus 229 ~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 229 NPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777766543 2348888888888888889999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRY 450 (585)
Q Consensus 377 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~ 450 (585)
||++++|||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.+...++.|.+.+++.+++|+
T Consensus 309 sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~ 387 (452)
T TIGR01773 309 SRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRK 387 (452)
T ss_pred HHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7899999999999888765544 236778888888889999999999999998
Q ss_pred ccCCCCC
Q 007913 451 YEKDVTP 457 (585)
Q Consensus 451 ~~~~~~~ 457 (585)
+.|+.++
T Consensus 388 ~~~~~~~ 394 (452)
T TIGR01773 388 KLKANGE 394 (452)
T ss_pred HHHhcCC
Confidence 8665433
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-53 Score=413.99 Aligned_cols=421 Identities=20% Similarity=0.335 Sum_probs=367.2
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
+++++||.|+.+|...+++|+.||+|+|...+...+. +||+.+++++++|++.+.++-.++||...-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4556999999999999999999999999999999887 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||..||++||.||+.++....+...+.+.|++.++++. + .++.+++++++...+|..++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P---------------~Wv~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--P---------------QWVFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c---------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999822 2 2478889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheec------c-----cCCCC---CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVH------G-----KTTNL---DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~------~-----~~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.+.++..+..+|+..++.+++.++.. . +.+|. .+|+|+|+.|++.++...+|+|.|.|.+...++|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999998888776541 1 12232 2789999999999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
.|||+|.+|||+..-.....++|+....++....|+++.++ ++|+...++..|.++...++++.++.+.++++|+.+++
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 99999999999999999999999999999999999998765 56999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.+|++|++|+||..||.|+|+| |+++|++|++++++...+-..+ ..|+.+.+..+.+.+..|.++.++.+++|
T Consensus 309 tsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~r 387 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR 387 (462)
T ss_pred cchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8899999999988776544444 45899999999999999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHH
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSL 529 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 529 (585)
+++++. .++.+||.|..|+...+
T Consensus 388 k~~~~~---------------------------------------------------------~~~~~fkm~~~p~~~~l 410 (462)
T COG1113 388 KAKPAE---------------------------------------------------------GKKLKFKMPLYPFTNYL 410 (462)
T ss_pred hcchhc---------------------------------------------------------ccCcccccccccHHHHH
Confidence 954432 23335777777777777
Q ss_pred HHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 530 SIAMNLFLIGSL-----GYLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 530 ~~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
++++-.+++..| ...+.....+|+++-.+.|..+++|+
T Consensus 411 ~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~ 453 (462)
T COG1113 411 TLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKK 453 (462)
T ss_pred HHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 766665555443 11234455667776666665555444
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=438.60 Aligned_cols=366 Identities=17% Similarity=0.284 Sum_probs=314.7
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++++||+++.+++.++++|.+||+|+|..++..++. +||..+++|++++++.++++.+++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 356999999999999999999999999999999887 8998899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
+||..||++||.+++++....+..+...+.++..+++. . + ....+.+++++++.+|++|+|..
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-~-~---------------~~~~~~~~~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-L-S---------------DWVASLAVVLLLLSLNLATVKMF 156 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-c---------------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999877777777777777765541 1 0 12455667788899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecc-----cC----CCC------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHG-----KT----TNL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~----~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
+++|++.+.+|+..++++++.++... +. .++ .++.|+++.+++.++...+|+|.|+|.+++++||
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 99999999999988887777655421 01 111 2344667778999999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
+|||+||+||++..+.+.+.++|++.........|++++.. ++|+.++++..++++...++.+..+++.+++.++.+++
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~ 316 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFS 316 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899999999999888888887753 47999988888889889999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHH---HHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAII---ALF-----SSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~---~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
.||++|+|||||.+|++|+|+| |+|+|++|+++++++..+. ... ..++.+.++.+....+.|.+.+++.++
T Consensus 317 ~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 395 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395 (469)
T ss_pred HHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 5699999999988765431 112 247888888889999999999999999
Q ss_pred HHhccCCCC
Q 007913 448 RRYYEKDVT 456 (585)
Q Consensus 448 ~r~~~~~~~ 456 (585)
+|+++|+.+
T Consensus 396 lr~~~p~~~ 404 (469)
T PRK11049 396 YRKQRPHLH 404 (469)
T ss_pred HHHhhhhcC
Confidence 999877643
|
|
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-53 Score=422.40 Aligned_cols=399 Identities=19% Similarity=0.277 Sum_probs=355.4
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHh
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 152 (585)
++||+|..+|+.++++|+.||+|+|+..|..+.+ +||+ +++++++.|++.++++.+++||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999988 9997 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
+|-+||..||+||+.|.+..+....+.+..++.+++ .. .....+..++.++...+|.+|+|..+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p-~~---------------v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP-DT---------------VPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC-CC---------------CChHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999875 11 11247778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecc----cCC-----C-C--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCC
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHG----KTT-----N-L--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~----~~~-----~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 300 (585)
..+.++..+|++.++.+++.++... +.+ + + .+.+++|+.++...+..+.|+|.|.|.+...++|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 9999999999999988888776521 101 1 1 23567789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc---------cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 007913 301 SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID---------MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (585)
Q Consensus 301 ~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (585)
+|++|||+.-......++|++..+.+...+|+++.+ ..+|+..++++.|.+.++.+++..++.+.+++.|+
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987732 34699999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 372 GSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIAL 445 (585)
Q Consensus 372 ~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (585)
.++++||++|+||+||..||+|+|+| |+|+|.+|++++.+++++-.+- ..|+++.+++++...+.|..+++++
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999999888643333 2689999999999999999999999
Q ss_pred HHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccch
Q 007913 446 LVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPW 525 (585)
Q Consensus 446 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 525 (585)
+++|+..+... +..+.-+||.|..||
T Consensus 423 irFR~A~~~QG------------------------------------------------------~s~~~L~yks~~~p~ 448 (541)
T COG0833 423 IRFRRAMKAQG------------------------------------------------------RSLDELPYKSPFGPY 448 (541)
T ss_pred HHHHHHHHHcC------------------------------------------------------CChhhcCccCCCccH
Confidence 99998754332 233455799999999
Q ss_pred HHHHHHHHHHHHHhcCCHH
Q 007913 526 LPSLSIAMNLFLIGSLGYL 544 (585)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~ 544 (585)
.++.++++++.++...+|.
T Consensus 449 g~~~~~~~~~li~i~q~y~ 467 (541)
T COG0833 449 GPIYGLILCILILIGQGYV 467 (541)
T ss_pred HHHHHHHHHHHHHHHcchh
Confidence 9999999999988875443
|
|
| >KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=445.10 Aligned_cols=487 Identities=29% Similarity=0.458 Sum_probs=379.6
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccC-CCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~ 151 (585)
+++||+|+.+|+.++++|.++|+|+|+..|.++...|||+.+++++++++.+++.+++++|++.++|. +||.|.|+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 68999999999999999999999999999999988566679999999999999999999999999999 59999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHh-hhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAM-SGTRR 230 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~~ 230 (585)
.|+.+||.+||++++.|++..++.+.+.+.+++++.+ ...+....++.+...+....+++++++.++.+-. .+.|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~---~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG---ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999999999999999999999999871 1111111112222333334444444444444443 66777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecccCCCCC---------CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS 301 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 301 (585)
...++++++.+.++.+.++++.|....|..|+. +|.|.++.|++.++..++|+|.|+|.++..+||.|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 777888888877777777777777776655554 37788899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHH----HhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 302 RDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNAAYSIAFR----QIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 302 r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
|++|+|+..++..+.++|++..+.+...+|+++ ++++++....+. ..+.+....+++++++++..+++|+.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999988 766654444444 44445555699999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 376 QARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSS------LNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 376 ~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
.||.+++||+||++||+|+++|+| |+|++|++++.+++++..+..+ |+++.++.+++.++.|.+++++++++|
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFR 421 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeee
Confidence 999999999999999999999966 9999999999999988777744 599999999999999999999999999
Q ss_pred hccCCCCC-----CCc--hhHHHHHHHHHHHHHhHHhhhccCCC-----c---chHHHHHHHHHHHHHHHHHhcccccCC
Q 007913 450 YYEKDVTP-----KNN--LVKFLVCLTVVVASSIGITAFWNSNG-----R---GWIGYVVTIAPWFLGTLGMALLPKQRV 514 (585)
Q Consensus 450 ~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (585)
+..++..+ +++ ...+......+++.......+|.... . +....++...++++..+.+..+.|+..
T Consensus 422 ~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~~ 501 (554)
T KOG1286|consen 422 YAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPTN 501 (554)
T ss_pred ecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeecccc
Confidence 87533221 111 11233344444444443333333321 1 122223333333333344444443322
Q ss_pred CCCCcccccchHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHH-hhccccc
Q 007913 515 PKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFL--RFIICSAVMLVYYLL-VGLHATY 569 (585)
Q Consensus 515 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~y~~-~~~~~~~ 569 (585)
. ..|+.+.+.+..++.++..++..+|. ....|...++..|+. |+.+|+.
T Consensus 502 ~------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 502 T------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred c------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 1 46777788888888888888888888 899999999999977 7777654
|
|
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=431.73 Aligned_cols=410 Identities=17% Similarity=0.208 Sum_probs=337.2
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
+.+|+++.++++++++++++|+|+|..|+... . +||..+++|+++++.+++.+++++||++++|++||.|.|+++ +|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g 78 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-IS 78 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HC
Confidence 34789999999999999999999999999864 4 788899999999999999999999999999999999999999 89
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|.+||.+||.+|....+...........|+...++.. .+.+ ...+++++++++++++|.+|+|..++
T Consensus 79 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~-~~~~------------~~~~~~~~i~~~~~~ln~~gvk~~~~ 145 (435)
T PRK10435 79 PAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL-NDPI------------PAGIACIAIVWVFTFVNMLGGTWVSR 145 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-CChH------------HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999998777776677677778887766511 1100 11245667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheecccCC----CCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHH
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVHGKTT----NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~ 309 (585)
++.+..+++++.++.+.+.++.+.+.+ ++.+..+.+..+++.++..++|+|.|+|.+++++||+|||+||+|||+.
T Consensus 146 i~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~ 225 (435)
T PRK10435 146 LTTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHH
Confidence 999999888877766655554443333 2222233456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCC
Q 007913 310 GSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHM 388 (585)
Q Consensus 310 ~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~ 388 (585)
.+..++.++|++..+......|.++.+ .++|+.++++..+++++..++.+..+++.+++.++.++..+|..+++||||.
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~ 305 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGN 305 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999988884 5679999998888899999999889999999999999999999999999999
Q ss_pred CchhhhccCCCCCchHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 007913 389 IPPWFALVHPKTQTPINATLLVTTLSAIIALF------------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVT 456 (585)
Q Consensus 389 lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 456 (585)
+||+|+|+| |+|+|++|++++++++.++... ..++.+.++.+...++.|++.+++.+++|+ ++.
T Consensus 306 lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~--~~~- 381 (435)
T PRK10435 306 FPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG--VNI- 381 (435)
T ss_pred ccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cch-
Confidence 999999999 7899999999988776543321 257889999999999999999999885542 111
Q ss_pred CCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHH
Q 007913 457 PKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLF 536 (585)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 536 (585)
|.+..|+.+.++.+.+++
T Consensus 382 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 399 (435)
T PRK10435 382 --------------------------------------------------------------RNFVSLICSVLGCVFCFI 399 (435)
T ss_pred --------------------------------------------------------------hHHHHHHHHHHHHHHHHH
Confidence 111245566666666655
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 537 LIGSLGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
.+. ..+|..+..+++++.+.|+.|+|||.
T Consensus 400 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (435)
T PRK10435 400 ALM---GASSFELAGTFIVSLIILMFYARKMH 428 (435)
T ss_pred HHH---HhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 554 34677888888988888888988763
|
|
| >KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=420.34 Aligned_cols=426 Identities=20% Similarity=0.289 Sum_probs=361.5
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccCh-h-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
++.++||+++.++.+.+.+++++|+|+|..|..+... +|+ + ++..|++++++++..++||+||++.+|++||.|.|+
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4566899999999999999999999999999999887 666 4 788899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhh
Q 007913 149 RVELGDFVAYIAAGNILLEA-VVGAAGLARSWSSY-LASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (585)
.++||+.+||...|..++.. ....|..+..+++| +...++. +..+......++.+++++++++|+.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~------------c~~p~~~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL------------CDVPRVASKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC------------CCCchHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999776654 45569999999999 5555541 1222223458899999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheeccc---CCCCCCC-C---CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcC
Q 007913 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK---TTNLDPF-L---PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (585)
Q Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~-~---~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 299 (585)
++|+..++|.+++..|++.+.++++.++.... .+|+... + ..+...+..++...+|+|.|||.....+||+||
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 99999999999999999999999999887432 3332211 1 122345778888999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (585)
|+||+|||+..++.+++++|++++++...+++.|++.+++.++..+. ..++.+. +.+.+.+.++++++.|+.+++.||
T Consensus 233 P~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 233 PRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred ccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999988866666655555 5555555 999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 007913 379 YTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPK 458 (585)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~ 458 (585)
+++++||+|+||+.|+..|++..||..++++.+..+++..+.++++.+++..++...+.+.+..++.+++|+|+|+.+||
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccC
Q 007913 459 NNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQR 513 (585)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (585)
.|.....+.+..++|..+.+..++...... ..+.....+.....|..+.+.+
T Consensus 392 iKvpl~~p~~~~~~~i~lvvip~~~~~~~~---~~ig~~i~l~G~~~Y~~~i~~~ 443 (479)
T KOG1287|consen 392 IKVPLFIPILFLLICIFLVVIPIISDFPVE---TLIGIGIILSGVPFYFLFIHWK 443 (479)
T ss_pred EeeeeehHHHHHHHHHHHhheeeeecCCcc---chhHHHHHHHhhhhheEEEEec
Confidence 887778888889999998888888664332 2333344444445555555333
|
|
| >KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=420.45 Aligned_cols=458 Identities=17% Similarity=0.212 Sum_probs=371.7
Q ss_pred CCCchHHHHHhhhhcCCccccccChhHHHHHhhcccc-cccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhh
Q 007913 57 RSTDATELITLQQESKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFA 135 (585)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~i~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~ 135 (585)
+++|++++.+++ +|+++||++++|+.+.++++.+- =.|+-..........|+|.++|+|++++++.++++++++|++
T Consensus 30 ~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~ 107 (550)
T KOG1289|consen 30 DDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELC 107 (550)
T ss_pred ccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344556666666 99999999999999999998651 123333333333332344599999999999999999999999
Q ss_pred hhccCCCchhHhHHH----HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchH
Q 007913 136 VEIPVAGGSFSFLRV----ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDP 211 (585)
Q Consensus 136 s~~P~~Gg~y~~~~~----~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (585)
+++|++||.|.|+.. .+||..+|++||...+++....++...+.++.+..... ..++.+ ..+..+..+
T Consensus 108 Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~-l~np~y-------~~~~~~~~~ 179 (550)
T KOG1289|consen 108 SAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVS-LTNPNY-------EPTNYHQFG 179 (550)
T ss_pred hhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHh-hcCCCC-------cccceEeeh
Confidence 999999999999986 67888999999999999999999999999999998877 444333 233345668
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc--------------CCCCCCCCCcChhHHHHHH
Q 007913 212 VAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--------------TTNLDPFLPYGTEGVFEAA 277 (585)
Q Consensus 212 ~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~~g~~~~~~~~ 277 (585)
+..++.+...++|+.+.|...+++.+...+.++.+++.++..+...+ .+|.++|.++||. +..++
T Consensus 180 v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f 258 (550)
T KOG1289|consen 180 VFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGF 258 (550)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhh
Confidence 89999999999999999999999999999999988888777665322 2344456555554 77788
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccc-c--cc--ccHHHHHHHHhCcHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE-I--DM--NAAYSIAFRQIGMNW 352 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~-~--~~--~~~~~~~~~~~~~~~ 352 (585)
....|.+.|+|+.+|++||+|||+|+.||||+.++.+..++.....+.+....++|. . ++ .+|+.+.+.+..++-
T Consensus 259 ~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k 338 (550)
T KOG1289|consen 259 FNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKK 338 (550)
T ss_pred ccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCC
Confidence 889999999999999999999999999999999999999999999999888887432 1 22 369999998776666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHH
Q 007913 353 AKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNI 425 (585)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~ 425 (585)
....+....+++.+.+..+.+.+.||+.|+.||||.|| ++++++||++++|.+|+++..+++.++.++ .+++.
T Consensus 339 ~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~A 418 (550)
T KOG1289|consen 339 GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNA 418 (550)
T ss_pred ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 66888888899999999999999999999999999999 999999999999999999999999888777 46888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHH
Q 007913 426 LSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLG 505 (585)
Q Consensus 426 l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (585)
+.+...++..++|....++.+..+|++ -|+.+ |++++.+. +..+++++|.++.++
T Consensus 419 lfs~a~i~l~~Ay~iP~~~rlf~~r~~---f~~gp---------------------~~lGk~s~-p~~~i~v~w~lf~~v 473 (550)
T KOG1289|consen 419 LFSAAAIALFIAYAIPIFCRLFFGRDD---FRPGP---------------------FNLGKFSK-PIGIIAVLWVLFMIV 473 (550)
T ss_pred HHHHHHHHHHHHHHHhHHhheeecccc---cCCCC---------------------cccccccc-chHHHHHHHHHHHHH
Confidence 999999999999999888877666652 22222 67777776 445556999999999
Q ss_pred HhcccccCCCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 007913 506 MALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHATYDVA 572 (585)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 572 (585)
+.++|+.++++. +.++| +.+++++.++..+++|+.++||..+...
T Consensus 474 il~fP~~~pvT~---~~MNy-------------------a~VV~gg~~lf~li~~~~~~~k~f~gP~ 518 (550)
T KOG1289|consen 474 ILCFPSVYPVTA---DNMNY-------------------ACVVYGGVMLFCLIYYFVSARKWFKGPI 518 (550)
T ss_pred HHhCCcccCCCc---ccCce-------------------EEEeehhhhhhhhheeeeecceeecCCc
Confidence 999997666643 33444 5568889999999999888776655443
|
|
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=436.73 Aligned_cols=377 Identities=21% Similarity=0.323 Sum_probs=309.8
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccCh-h-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
+++++||+++.++.+++++++++|+|+|..++.++.. +|+ + .+++|++++++.++.+++++|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4567999999999999999999999999999998876 676 3 468899999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhh
Q 007913 149 RVELGDFVAYIAAGNILLE-AVVGAAGLARSWSSYLAS-MIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (585)
++.+||.+||+.+|..++. +....+..+..+++++.. .++....+.| ....++++++++.+.+|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~------------~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEW------------AIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchH------------HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999987753 345566666667777543 2321111111 1236778888899999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheeccc---CCC--CCC-CC--CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK---TTN--LDP-FL--PYGTEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~--~~~-~~--~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
|+|..+++|.+++.++++.++++++.++.... .++ ... +. +.+..++..++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 99999999999999999988777766654321 111 111 11 12456788889999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAF-RQIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
||+|++|||+..++.+++++|++.+++.....|.+++.++++....+ +...+ ....++.+...++.+++.++.+.+.|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~s 341 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSS 341 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888776544433333 32222 55667788888899999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 378 RYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 378 R~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|++++|||||.+|++|+|+|+|+++|++|++++++++.+....+++..+.++.+...++.|.+..++.+++|+|+|+.+|
T Consensus 342 R~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~r 421 (501)
T TIGR00911 342 RLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNR 421 (501)
T ss_pred HHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCC
Confidence 99999999999999999999999999999999999888777677777788888888899999999999999999888777
Q ss_pred CCch
Q 007913 458 KNNL 461 (585)
Q Consensus 458 ~~~~ 461 (585)
++|.
T Consensus 422 p~r~ 425 (501)
T TIGR00911 422 PIKV 425 (501)
T ss_pred CccC
Confidence 6553
|
|
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=430.41 Aligned_cols=416 Identities=19% Similarity=0.237 Sum_probs=323.0
Q ss_pred cCCccccccChhHHHHHhhccc-ccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSV-VGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
+++++||+++.++.++++++.+ ++.|++..++..... +||..+++|+++++..++++++++||++++|++||.|+|++
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 7889999999999999999976 789999999999877 99999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhccccc--CCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCF--ADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
+.+||.+||++||.+++++....+........++....+.... .. ..++. +...++..+++.+++++.+.+|++|
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQI--IG-EDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--cc-cCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999887776666665555433210000 00 00011 1111123467777888999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecccCCC---CC----CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCC
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTN---LD----PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKP 300 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~----~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 300 (585)
+|..+++|++...+++..++++++.++.+.+.++ ++ +..+.....++.+....+|+|.|+|.+++++||+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 9999999999999998877776665554332211 11 1112223456677788899999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 007913 301 SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTE--IDMNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQA 377 (585)
Q Consensus 301 ~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 377 (585)
+||+|||++.++.++.++|.+..+......++.+ ..++++.+.++. ..+.++.. .+.+..+++.+++.++.+.+.|
T Consensus 243 ~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~s 321 (475)
T TIGR03428 243 RRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQTAGS 321 (475)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887777665555321 112222333344 34545544 4445667788999999999999
Q ss_pred HHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 378 RYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRY 450 (585)
Q Consensus 378 R~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~ 450 (585)
|++|++||||.+| ++|+|+|||+++|++|+++.++++.++.++ ..|+.+.++.+.+.++.|.+..++.+.+|+
T Consensus 322 R~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~ 401 (475)
T TIGR03428 322 RLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRL 401 (475)
T ss_pred HHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 489999999999999999999998777665 357899999999999999999988887776
Q ss_pred cc-C---CCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccC
Q 007913 451 YE-K---DVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQR 513 (585)
Q Consensus 451 ~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (585)
|. + +..++.+ |++++.++ .+++++++|.++..+..++|+..
T Consensus 402 ~~~~~~~~~~~~g~---------------------f~lg~~g~-~vn~~a~~~~~~~~v~~~~P~~~ 446 (475)
T TIGR03428 402 RGWPRGDQTDPAGL---------------------FSLGRWGL-PVNILAVVYGALMVVNLSWPRPE 446 (475)
T ss_pred hccCCccCCCCCCC---------------------CCCchhHH-HHHHHHHHHHHHHHHHHHCCCCC
Confidence 53 1 1112222 77887654 89999999999999999999543
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=431.48 Aligned_cols=418 Identities=22% Similarity=0.291 Sum_probs=343.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccC-CCchhHhHHHHh
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVEL 152 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~ 152 (585)
.+|++|.++.+++++++++|+|+|..++..... +||. .+++|+++++++++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478999999999999999999999999988765 8886 7899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
||..||+.||.+++.+.......+....+++...++.... .+.....+.+++++++.+.+|++|+|..+
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGS-----------GNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999999999988888777777777777776651110 01111235667777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCC-CCC-------CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFL-------PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~-------~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
|+|.+++.++++.++++++.++...+.+++. ++. ++++.++..++...+|+|.|+|.+++++||+|| +||+
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 9999999999988877777665433333221 111 123456788888999999999999999999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccH-HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEID-MNAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
||++..+..+++++|++...+.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.||++|+
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888888764 3567 677777777888888999999999999999999999999999
Q ss_pred HHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|||||.+|++|+|+|| +++|++|++++++++.++.+. ..++.+.++.+.+.++.|.+.+++.+++|+|++. +
T Consensus 312 mardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~-~- 388 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTY-P- 388 (473)
T ss_pred HHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-c-
Confidence 9999999999999995 599999999999887655443 4689999999999999999999999999887521 1
Q ss_pred CCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHH
Q 007913 458 KNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFL 537 (585)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 537 (585)
+. +.|..++++.++++.++++
T Consensus 389 -------------------------------------------------------~~----~~~~~~~~~~l~~~~~~~~ 409 (473)
T TIGR00905 389 -------------------------------------------------------KI----KNRKALIVGVIACVYSIWL 409 (473)
T ss_pred -------------------------------------------------------cc----ccchHHHHHHHHHHHHHHH
Confidence 00 1123456677777777766
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 538 IGSLGYLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 538 ~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
....+........+++++|...|+++.|++
T Consensus 410 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 410 LYAAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666566667788889988887766544
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=431.07 Aligned_cols=360 Identities=18% Similarity=0.232 Sum_probs=301.7
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccC-CCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPV-AGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~-~Gg~y~~~~~~~g 153 (585)
||+++.+|+.+++++.++|+|+|..++..++. +||. .+++|+++++++++++++++||++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999887 8885 7999999999999999999999999995 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|.+||++||.++++++...+......+.++..+.+.. + ......+++++.+++|++|+|..++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV------------N-----PAVWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------------C-----HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999998888888776543300 0 1133345567788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheec--ccC-----------CCCCCCCCc----ChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVH--GKT-----------TNLDPFLPY----GTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~--~~~-----------~~~~~~~~~----g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
+|.+++.+|+..++.+++.++.. .+. .|..++.+. ++.++..++...+|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 99999999987776665544321 110 011123222 2567888999999999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc---c-------cccHHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI---D-------MNAAYSIAFRQIGMNWAKYLVSVCALKGMT 366 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (585)
+|||+||+|||++.+..++.++|++..++.....|+++. + .++|+..+.+..+.++...++.+..+++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 999999999999999999999999998887777776542 1 126877777888888888999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHH
Q 007913 367 TSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFML 440 (585)
Q Consensus 367 ~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~ 440 (585)
++.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.++.+...++.|++
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~ 381 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMC 381 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 7899999999999887654332 24788999999999999999
Q ss_pred HHHHHHHHHhccCC
Q 007913 441 MAIALLVRRYYEKD 454 (585)
Q Consensus 441 ~~~~~l~~r~~~~~ 454 (585)
.+++.+++|++.++
T Consensus 382 ~~~~~i~~r~~~~~ 395 (478)
T TIGR00913 382 ICLSHIRFRKAMKA 395 (478)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887543
|
|
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=426.53 Aligned_cols=347 Identities=19% Similarity=0.285 Sum_probs=301.3
Q ss_pred HhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHH
Q 007913 87 LCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILL 166 (585)
Q Consensus 87 i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 166 (585)
+++|++||+|+|..++...+. +||..+++|++++++.++.+++++||++++|++||.|.|++|.+||.+||.+||.+++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578899999999999999887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 007913 167 EAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (585)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (585)
.++...+......+.++..+.+ +. ....++.+++++.+.+|++|+|..+++|.+++.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP------------GI-----PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc------------cC-----cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9998888877666666555432 00 123678888889999999999999999999999999988
Q ss_pred HHHHHhheeccc-------CCCC------CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHH
Q 007913 247 VFVIIVGFVHGK-------TTNL------DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (585)
Q Consensus 247 ~~~~i~~~~~~~-------~~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 313 (585)
+++++.++.... ..++ .++.|+++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 777666543211 1111 134567778899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccccccc--ccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch
Q 007913 314 MITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP 391 (585)
Q Consensus 314 ~~~~~y~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~ 391 (585)
.+.++|++..++.....|+++.+. .+++..+.+..++++...++.+..+++.+++.++.+++.||++|++||||.+|+
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999888888876543 346777788889899999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007913 392 WFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYE 452 (585)
Q Consensus 392 ~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~ 452 (585)
+|+|+| |+|+|++|++++++++.+..+. ..++.+.++.+...++.|.+.+++.+++|++.
T Consensus 304 ~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 304 VMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8899999999998877654443 25889999999999999999999999999863
|
|
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-50 Score=416.81 Aligned_cols=354 Identities=20% Similarity=0.251 Sum_probs=291.8
Q ss_pred cChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 79 l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
+|.|+.+++.+++++|+|+|..++...+. +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
..||.+++.+....+........++...++ .+. + ....++++++++.+.+|++|+|..+++|.+.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~------------~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFG-WSS--W------------QLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCC--c------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999987776666555555566665554 111 1 1235667778888999999999999999988
Q ss_pred HHHHHHHHHHHHHhheecccCCCC--CCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNL--DPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMIT 316 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~ 316 (585)
..+.+..+..+...+ ..+..++ .+..+.++.++..++...+|+|.|+|.+++++||+|||+||+|||++.+..++.
T Consensus 145 ~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~ 222 (410)
T PRK11021 145 ALLIVALVVAIWWAG--DIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAG 222 (410)
T ss_pred HHHHHHHHHHHHHHc--CCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 865544433322211 1222222 223445778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccc-ccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhc
Q 007913 317 AVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFAL 395 (585)
Q Consensus 317 ~~y~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~ 395 (585)
++|++.+.+.....+.++. ..++|..++++...+++...++.+..+++.+++.++.+.+.||++|+|||||.+|++|+|
T Consensus 223 ~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k 302 (410)
T PRK11021 223 LVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLAR 302 (410)
T ss_pred HHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHh
Confidence 9999999887666654443 234577777776655666677888888999999999999999999999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 396 VHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 396 ~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
+| |+++|+++++++.+++.+..++ .+++.+.+..+...++.|.+.+++.++++++
T Consensus 303 ~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 303 LS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred hc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99 7799999999998877655433 4688899999999999999999999988754
|
|
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=423.28 Aligned_cols=443 Identities=17% Similarity=0.201 Sum_probs=338.6
Q ss_pred cCCccccccChhHHHHHhhcccc-cccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVV-GSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~i-g~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
+++++||+++.++.++++++.+. ..|++...+..... +|| ..+++|++++++.++++++++||++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 78889999999999999999652 36787777766655 888 4899999999999999999999999999999999999
Q ss_pred HHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-cchhcccccCCCCCcchHHHHHHHHHHHHH
Q 007913 149 RVELG----DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSD-LLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (585)
Q Consensus 149 ~~~~g----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (585)
++.+| +..||++||.+++++....+......+.++........+. .+ ..+.+....+.++++++++.+
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREY-------IPTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------cccCchhhhhHHHHHHHHHHH
Confidence 99886 5779999999999999999988888888887655311110 01 111122235667778889999
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccC----CC--CC-------CCCCcChhHHHHHHHHHHHHhhcHhHH
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKT----TN--LD-------PFLPYGTEGVFEAAAVVYWSYTGFDMV 290 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~--~~-------~~~~~g~~~~~~~~~~~~~~~~G~e~~ 290 (585)
|++|.|..++++++..+++++.++++.+..+...+. .+ ++ ++.++++ +++.++....|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 999999999999999988887776555444332111 11 11 1223333 4666777788999999999
Q ss_pred hhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccc-cccc-cc--ccHHHHHHHH-hCcHHHHHHHHHHHHHHH
Q 007913 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVK-YTEI-DM--NAAYSIAFRQ-IGMNWAKYLVSVCALKGM 365 (585)
Q Consensus 291 ~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~-~~~~-~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 365 (585)
++++||+|||+||+|||+..++.+..+++++..+......+ .++. ++ ++|+.+++.. .|.++...++.+..+++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998877766655554433332 2222 21 2588888775 465577777888888999
Q ss_pred HHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHH
Q 007913 366 TTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIF 438 (585)
Q Consensus 366 ~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~ 438 (585)
+++.++.+++.||++++|||||.+| ++|+|+|||+++|++|++++++++.++.+. ..++.+.++.+...++.|
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y 396 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSY 396 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999998999999999999988776655 368999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 007913 439 MLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLW 518 (585)
Q Consensus 439 ~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (585)
.+...+.+++|++ ++.+|+++ .++.+ +..+..+++|.++.++..++|...+..+
T Consensus 397 ~~~~~~~l~~~~~-~~~~~~f~-----------------------lg~~~-~~~~~~~~~~~~~~~v~~~~P~~~p~~~- 450 (482)
T TIGR00907 397 VIPIICKLAKGRN-TIAPGPFW-----------------------LGKYG-FFVNAVAVAWTVFSSVLFSFPPVLPVTP- 450 (482)
T ss_pred HHHHHHHHHhcCC-CCCCCCCc-----------------------CCcch-HHHHHHHHHHHHHHHhheeCCCCCCCCc-
Confidence 9988877655444 34444433 33333 3667778888888888888885332221
Q ss_pred cccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccccc
Q 007913 519 GVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHATY 569 (585)
Q Consensus 519 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 569 (585)
. .+|| +.+..++.++++.++|+.++||+.+
T Consensus 451 --~------------------~~ny-~~~~~~~~~~~~~~~~~~~~r~~~~ 480 (482)
T TIGR00907 451 --E------------------NMNY-AVVVFAGVLAISLVYWKYKGRKEFT 480 (482)
T ss_pred --c------------------cCCh-HhHHHHHHHHHHHHHheEeceeecc
Confidence 1 3444 3446688889999999888887655
|
|
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=438.10 Aligned_cols=426 Identities=15% Similarity=0.187 Sum_probs=341.2
Q ss_pred CccccccChhHHHHHh-hcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhh-ccCCCchhHhHH
Q 007913 73 QPLQKCLTWWDLTWLC-FGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVE-IPVAGGSFSFLR 149 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~-~P~~Gg~y~~~~ 149 (585)
++-+|++|+++.+.+. +++++|+|+|..++.++.. +|.. +++.|++++++++++++||+|++++ +|++||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3446889999999997 9999999999999999987 7876 8889999999999999999999998 999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
|.+|+.+|+..||.+++++.++.+.++.++++++..+++. ..... .....+...+++.+++++++++|++|+|
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~-~~~~~------~~~~~~~~~iia~i~l~ll~~In~~Gvk 223 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRE-NGSKI------MVDPINDIRIYGTVTVVVLLGISFAGME 223 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccc------ccCccccchHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999998761 11000 0011112357888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccC---------------CCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhh
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKT---------------TNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 294 (585)
..+++|.++++++++.++.+++.++..... .|+.+..+.+..++...+...+++|.|+|+.++++
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888777765542111 01111122233347777777888999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccHH------------------HH----HHHH-hCc
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAAY------------------SI----AFRQ-IGM 350 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~------------------~~----~~~~-~~~ 350 (585)
||+|||+|++|||++.++.+++++|++.++++....+.+.... ++.. .. .+.. ...
T Consensus 304 gElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~ 383 (953)
T TIGR00930 304 GDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLV 383 (953)
T ss_pred HhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhh
Confidence 9999999999999999999999999999988777776543221 1111 00 1110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007913 351 NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSS 428 (585)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~ 428 (585)
.....++.++++++++++.++++++++|++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++++++.+..
T Consensus 384 ~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~ 463 (953)
T TIGR00930 384 SPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAP 463 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 2245788899999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhc
Q 007913 429 VFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMAL 508 (585)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (585)
+.+..++++|++++++++++|++++...||
T Consensus 464 lis~~fLl~Y~lvnla~~~l~~~~~p~~RP-------------------------------------------------- 493 (953)
T TIGR00930 464 IISNFFLASYALINFSCFHASLLRSPGWRP-------------------------------------------------- 493 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCC--------------------------------------------------
Confidence 999999999999999999988765322111
Q ss_pred ccccCCCCCCcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 509 LPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 509 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
.||. +.+|++++|++.+++++...+ |...++.++++++.|+++.+|+.
T Consensus 494 --------~fk~-~~~~~sllG~l~c~~lmf~i~---w~~ali~~~i~~~ly~~~~~~~~ 541 (953)
T TIGR00930 494 --------RFKY-YHWWLSLLGASLCCAIMFLIS---WWAALVAMVIALFLYKYVTYKKP 541 (953)
T ss_pred --------cccc-chHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhccCC
Confidence 1222 456888888888888877664 44556666777777777665543
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=413.99 Aligned_cols=413 Identities=20% Similarity=0.276 Sum_probs=333.6
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCC-CchhHhHHHHhch
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVA-GGSFSFLRVELGD 154 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~-Gg~y~~~~~~~g~ 154 (585)
|++|.++++++++++++|+|+|..|+..+.. +||. .+++|+++++.+++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6899999999999999999999999998876 7886 78899999999999999999999999987 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
..||+.||.+|+++.............++...++.... .+.......+.+++++++.+|++|+|..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-----------GNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999998877776666666666655441100 0001112456666778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheecccCCCCCC---------C-CCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKTTNLDP---------F-LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---------~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
|.+++.+|++.++++++.++...+.+++.. + ..+.+.++..++...+|+|.|+|.+.+++||.|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999888877776654333222211 0 1112345667888899999999999999999998 7999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccH-HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-NAA-YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
||++..++..+.++|++..+......|+++++. ++| ..++++...++++..++.++++++.+++.++.+.+.+|++|+
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888877653 345 667777888899999999999999999999999999999999
Q ss_pred HHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-----SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|||||.+|++|+|+| |+|+|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+++ ++
T Consensus 308 ~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~-~~ 385 (468)
T TIGR03810 308 MAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQ-ER 385 (468)
T ss_pred HHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cc
Confidence 999999999999999 7899999999998887655443 4589999999999999999999999999877521 10
Q ss_pred CCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHH
Q 007913 458 KNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFL 537 (585)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 537 (585)
. + ++ .++++.++.+.++++
T Consensus 386 ~------------------------------------------------------~---~~----~~~~~~l~~~~~~~~ 404 (468)
T TIGR03810 386 G------------------------------------------------------R---RK----QLLIGLVALLYAVWL 404 (468)
T ss_pred c------------------------------------------------------h---hh----hHHHHHHHHHHHHHH
Confidence 0 0 01 135667777777777
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 538 IGSLGYLAFLRFIICSAVMLVYYLLVGL 565 (585)
Q Consensus 538 ~~~~~~~~~~~~~~~~~i~~~~y~~~~~ 565 (585)
+...++.......+..++|+..|...+|
T Consensus 405 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 405 IYAAGLKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776666667777888888865433
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=391.05 Aligned_cols=435 Identities=16% Similarity=0.240 Sum_probs=317.5
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
|+++.+++..+.+..+.+ +...+.. +. .|+.+++.|++++++. ++.+++++||++++|++||.|.|+++.+|+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~~~--a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLPAE--AE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcchHH--HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 459999999999887765 3323322 34 7888899999999876 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007913 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (585)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 235 (585)
+||..||.+|+++.+..+......+..+....+ ... . .+..+.+......+.+++.++.+.+|++|+|..++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~-~~~--~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGP-EAT--V---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccc--c---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 999999999999877655443333333332221 000 0 0111111111224556666778899999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhheec---ccCC----CCCCCCCc--ChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChh
Q 007913 236 WISSIV-SSCVIVFVIIVGFVH---GKTT----NLDPFLPY--GTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305 (585)
Q Consensus 236 ~~~~~~-~~~~~~~~~i~~~~~---~~~~----~~~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p 305 (585)
++...+ +++.++++++.++.. .+.. ++.++.|+ ++.++..+ ...+|+|.|+|.++..+||+|||+||+|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchh
Confidence 887544 344444444433321 1111 11122232 22333322 2457899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccccH----HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAA----YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 306 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
||+..+..++.++|++..+++....|+++...+++ +.+..+..+.++...++.+..+++.+++.++.+.+.+|+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887654333 34445556777888888888888999999999999999999
Q ss_pred HHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 007913 382 QIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF--------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEK 453 (585)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~ 453 (585)
++||||.+|++|+|+| |+++|+++++++++++.++.++ ..++.+.++.+...++.|++.+++.+++|+|+|
T Consensus 309 a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 309 AVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQP 387 (474)
T ss_pred HHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 8899999999999876543332 236788888898899999999999999998888
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHH
Q 007913 454 DVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAM 533 (585)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 533 (585)
+.+|++|. ..++.+.+..+..++++.++.++..++|....... .
T Consensus 388 ~~~rpf~~---------------------p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~---~------------ 431 (474)
T TIGR03813 388 DRPRPYRI---------------------PGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTG---S------------ 431 (474)
T ss_pred CCCCCeEe---------------------cCCccchhHHHHHHHHHHHHHHheeEeCCcccCCC---c------------
Confidence 87776541 12334445788889999999988888885432221 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccc
Q 007913 534 NLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 567 (585)
++|| +.+.+++.+++..++|+.++|||
T Consensus 432 ------~~ny-~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 432 ------PTRY-VGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred ------hHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 2334 44466677777888888877655
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=383.00 Aligned_cols=400 Identities=16% Similarity=0.204 Sum_probs=293.3
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHH-HHHHHHHHHHhhhhcc-CCCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIP-VAGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~g 153 (585)
+|+++.++++++.++.+.+ ++..+. .+. .|...+..+++++++ .++.+++++||++++| ++||.|.|+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~--~a~-~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT--FAT-SGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH--HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5779999999999988853 454443 223 677777777887776 6889999999999997 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
+.+||+++|.+|+...+..+.........+..... .+ +.+.+.....+..++++++++++|++|.|..++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~~---------~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-FP---------ALNEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc---------hhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999998876554443322332333222 10 111111112345566778899999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHhheec---ccC----CCCCCCCCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 234 LNWISSIVSSCV-IVFVIIVGFVH---GKT----TNLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 234 ~~~~~~~~~~~~-~~~~~i~~~~~---~~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
++++.....++. ++++++.+... .++ .+..++.|+. ..+.+..+...+|+|.|+|.+++++||+|||+||+
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998876544433 33333322221 111 1112333331 12344455556899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHH----HHHHhC--cHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI----AFRQIG--MNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (585)
|||++.+++++.++|.+..+++....|+++...+++..+ .....+ .++...++.+..+++.+++.++++++.||
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888877888887764443333 333333 25677788888899999999999999999
Q ss_pred HHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 379 YTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF---------SSLNILSSVFSFSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r 449 (585)
+++++||||.+|++|+|+| |+++|+++++++++++.++.+. ..++.+.++.+...++.|++..++.+++|
T Consensus 308 ~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr 386 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386 (507)
T ss_pred HHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 8899999999999988765432 13566677788899999999999999999
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhccccc
Q 007913 450 YYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQ 512 (585)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (585)
+|+|+.+|++|. ..++.+.+.++...+++.++.++..++|..
T Consensus 387 ~k~p~~~rpf~~---------------------pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~ 428 (507)
T TIGR00910 387 LKHPDLKRTFNI---------------------PGGIGGKLIIAGIGFLLSIFAFFISFLPPA 428 (507)
T ss_pred HhcCCCCCCeEe---------------------cCCccchhhHHHHHHHHHHHHHheeeeCCC
Confidence 999888877652 111223346677777777777777778743
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=376.78 Aligned_cols=361 Identities=28% Similarity=0.495 Sum_probs=310.5
Q ss_pred cChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHHHhhhhccCCCchhHhHHHHhchhHH
Q 007913 79 LTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (585)
Q Consensus 79 l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 157 (585)
+|+++.++++++.++|+|++..+ .... +|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~-~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAAS-AGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTC-TGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58899999999999999998876 3334 8888888999999888 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007913 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDS-NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNW 236 (585)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 236 (585)
++.+|.+++.+....+.......+++...++. ..++.| ....++++++++.+.+|++|.|..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPW------------PQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHH------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccc------------hheeeeecccccceEeeechhhhhhhhhh
Confidence 99999999999999998888889988877651 111111 23477888999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHhheecccCCC-------CCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHH
Q 007913 237 ISSIVSS-CVIVFVIIVGFVHGKTTN-------LDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (585)
Q Consensus 237 ~~~~~~~-~~~~~~~i~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai 308 (585)
+++.+++ ..++++++.++...+.+. ...+.|+++.+++.++...+|+|.|+|.+++++||.|| ||+||++
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai 223 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeec
Confidence 9999999 576666666665443221 22456667777899999999999999999999999877 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccc----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 309 VGSMCMITAVYCLMALALTMMVKYTEIDMNA----AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 309 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
..+.+++.++|++..++.....|+++.+.++ +....++..++++...++.+..+++.+++.++.+.+.+|++++||
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 9999999999999999999999988765432 466777777778999999999999999999999999999999999
Q ss_pred hcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 007913 385 RAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTP 457 (585)
Q Consensus 385 rdg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~ 457 (585)
|||.+|++|+|+| |+++|++++++.++++.++.+. .+++.+.+..+....+.|.+..++.+++|+|+|+.+|
T Consensus 304 ~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 304 RDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp HTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9999999999999 9999999999999999666532 2678999999999999999999999999999887644
|
... |
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=370.17 Aligned_cols=379 Identities=31% Similarity=0.489 Sum_probs=324.6
Q ss_pred cCCccccccChhH-HHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 71 SKQPLQKCLTWWD-LTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 71 ~~~~l~r~l~~~~-~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++..+.+++++|+++.+|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4566789999999 889999999999999999988765 4 555555999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 150 VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 150 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
+.+||..|+.++|.+++++....+........++...++. .. . ...+......++.+++++.+++|++|.|
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-------~~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPG-PG-L-------LSIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-ch-h-------hcCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999988887762 11 0 0011023357888999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCC---C--cChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCCh
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFL---P--YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDI 304 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~--~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~ 304 (585)
..++++.+...++++.++++.+.++.+.+..+.+.+. + ....++..++...+|+|.|+|.+++++||+|||+|++
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 9999999999999999999888877766554322211 1 2234588888899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN---AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
||+++.+++.+.++|++.+++.....+.+++... .|..+......+.+...++.+..+.+.+++.+++..+.+|.++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887655433 6888888877778999999999999999999999999999999
Q ss_pred HHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 007913 382 QIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF-S----SLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVT 456 (585)
Q Consensus 382 ~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-~----~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~ 456 (585)
+|||||.+|++|+|+|+|+++|+++++++++++..+... . .++.+.++.+...++.|.+.+++.+++|+|+++.+
T Consensus 315 ~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 394 (466)
T COG0531 315 AMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLK 394 (466)
T ss_pred HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999833333 2 36899999999999999999999999999876655
Q ss_pred CCCc
Q 007913 457 PKNN 460 (585)
Q Consensus 457 ~~~~ 460 (585)
|+.+
T Consensus 395 ~~~~ 398 (466)
T COG0531 395 RPFR 398 (466)
T ss_pred Cccc
Confidence 5443
|
|
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=362.55 Aligned_cols=377 Identities=16% Similarity=0.253 Sum_probs=270.5
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHH-HHHHHHHHHHhhhhccC-CCchhHhHHHH
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLS-ALLSAFCYTEFAVEIPV-AGGSFSFLRVE 151 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~~el~s~~P~-~Gg~y~~~~~~ 151 (585)
++||++|++++..++++.++|.+. .+ ..... +|+..++.+++++++ .++.+++++||++++|+ +||.|+|+++.
T Consensus 4 ~~~~~l~~~~l~~~~~~~vig~~~--~~-~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~ 79 (496)
T PRK15238 4 NTKKKLSLIGLILMIFTSVFGFAN--SP-RAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKS 79 (496)
T ss_pred cccCeeeHHHHHHHHHHHHHhCCc--hH-HHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 347889999999999999998653 23 22334 788877777777755 67899999999999997 89999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSS-YLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
+||.+||+.+|.++.+++...+........ .....++......|+.. +.. .......++++++++++++|.+|+|.
T Consensus 80 ~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~ 156 (496)
T PRK15238 80 VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GLN-STQVVGILAVIWMILVTFVASKGINK 156 (496)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--ccc-chHHHHHHHHHHHHHHHHHHccchHH
Confidence 999999999999888777654433222111 11111221111112110 000 11111245566666899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHH----hheecc-cCC---CCCCCC----Cc--ChhHHHHHHHHHHHHhhcHhHHhhhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVII----VGFVHG-KTT---NLDPFL----PY--GTEGVFEAAAVVYWSYTGFDMVATMAEE 296 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i----~~~~~~-~~~---~~~~~~----~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E 296 (585)
.++++++.+.+++...+++++ ..+... +.+ +...+. +. +..+++.++..+.|+|.|+|..++++||
T Consensus 157 ~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 236 (496)
T PRK15238 157 IAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDK 236 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 999999887776543221111 111111 111 111111 11 1135777788899999999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccc-------cHHHHHHHHh-----------------CcHH
Q 007913 297 TKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN-------AAYSIAFRQI-----------------GMNW 352 (585)
Q Consensus 297 ~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----------------~~~~ 352 (585)
+|||+|++|||+..+..++.++|++..+.+....|+++...+ .|+. +.+.. .+++
T Consensus 237 ~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~ 315 (496)
T PRK15238 237 TENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVW 315 (496)
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHH
Confidence 999999999999999999999999998887777776655321 1221 11211 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH---h------hH
Q 007913 353 AKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF---S------SL 423 (585)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~---~------~~ 423 (585)
+..++.+..+.+.+++.++..++.+|.++.++|||.+||+|+|+| |+|+|++|++++++++.++... . .|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f 394 (496)
T PRK15238 316 FARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFF 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 555777888899999999999999999999999999999999999 8999999999999877655433 1 17
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 007913 424 NILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNN 460 (585)
Q Consensus 424 ~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 460 (585)
+.+.++.+...++.|++.+++++++|| +|+.+|+++
T Consensus 395 ~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~ 430 (496)
T PRK15238 395 NILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFV 430 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCce
Confidence 889999999999999999999999876 466666654
|
|
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=390.33 Aligned_cols=361 Identities=25% Similarity=0.412 Sum_probs=305.2
Q ss_pred HHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHH
Q 007913 84 LTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 84 ~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
+.++++++++|+|+|...+..... +|| +.++++++++++.++++.+++|+++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 345678899999999999998887 888 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 007913 163 NILLEAVVGAAGLARSWSSYLASM--IDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (585)
Q Consensus 163 ~~~l~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 240 (585)
.+++.++...+......+.++..+ ++ ..+..|. ....++.++.++++.+|++|+|..++++.++..
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~ 148 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFP-GLPSTWV-----------WGILIAIIFILLITLLNLFGVRVSGKIEFILTI 148 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccc-ccccccc-----------ccchhhhhhhhhhhhhhhhhhhccchHHHHHHH
Confidence 999999999999888877777665 33 1111111 111457788888999999999999999999999
Q ss_pred HHHHHHHHHHHhh-ee-ccc--CCCC---------CCCCCcC--------hhHHHHHHHHHHHHhhcHhHHhhhhhhhcC
Q 007913 241 VSSCVIVFVIIVG-FV-HGK--TTNL---------DPFLPYG--------TEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (585)
Q Consensus 241 ~~~~~~~~~~i~~-~~-~~~--~~~~---------~~~~~~g--------~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 299 (585)
++++.++.+++.+ +. ..+ ..+. .+..+++ +.+++.++..++++|.|+|+++.++||+||
T Consensus 149 i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~ 228 (478)
T PF00324_consen 149 IKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKN 228 (478)
T ss_pred HhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCC
Confidence 9999998888877 22 111 1111 1123334 678999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccc------cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhh
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMN------AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGS 373 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (585)
|+|++|||+..+++.++++|++..++.....|+++.... +|+.++.+..++++...++.++.+.+.+++.++.+
T Consensus 229 P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 229 PRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred chhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhh
Confidence 999999999999999999999999999988888875321 48889999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 374 LGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF------SSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 374 ~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
++.||++++|||||.+|+++.+.|+|+|+|++|++++.+++.+..+. ..++.+.++.+...+..|.+.+++.++
T Consensus 309 ~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~ 388 (478)
T PF00324_consen 309 YAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIR 388 (478)
T ss_pred cccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhh
Confidence 99999999999999999666666779999999999999988766654 235677888889999999999999998
Q ss_pred HHhccCCCCC
Q 007913 448 RRYYEKDVTP 457 (585)
Q Consensus 448 ~r~~~~~~~~ 457 (585)
+|++.+..++
T Consensus 389 ~r~~~~~~~~ 398 (478)
T PF00324_consen 389 FRKKFKYRGR 398 (478)
T ss_pred hhhhhccccc
Confidence 8887544433
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=267.97 Aligned_cols=426 Identities=16% Similarity=0.201 Sum_probs=333.3
Q ss_pred ccccChhHHHHH-hhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHh
Q 007913 76 QKCLTWWDLTWL-CFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVEL 152 (585)
Q Consensus 76 ~r~l~~~~~~~i-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~ 152 (585)
+-++|..-.+.+ ++.++.|.-.|....+++.. +|.. .++..++++.+.++++.+++.++++-- .+||.|..++|.+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsL 189 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSL 189 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEeccc
Confidence 344666554444 77888899999999999877 8876 777788999999999999999999776 6899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccCCccch--hcccccCCCCCcchHHHHHHHHHHHHHHhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMI-DSNNSDLLR--FKVDCFADGFNLLDPVAVLILLVCNGIAMSGTR 229 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~ 229 (585)
||.+|-.+|.+++++..++.+.+.++..+.+..++ +.. ..+. ....+.....+...+.+.+++++.+++...|+|
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~a--aIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK 267 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAA--AIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVK 267 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHh--hhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887744 310 0000 000123334555678999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecc-c-----------------------------CCC------------------
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHG-K-----------------------------TTN------------------ 261 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-----------------------------~~~------------------ 261 (585)
...++..++..+.++.++.+.+.++-.. + ..|
T Consensus 268 ~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~ 347 (1075)
T KOG2082|consen 268 FVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSAT 347 (1075)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcc
Confidence 9999999999999988887776654310 0 001
Q ss_pred ---------CC---------------CCCC----------cC-------------------hhHHHHHHHHHHHHhhcHh
Q 007913 262 ---------LD---------------PFLP----------YG-------------------TEGVFEAAAVVYWSYTGFD 288 (585)
Q Consensus 262 ---------~~---------------~~~~----------~g-------------------~~~~~~~~~~~~~~~~G~e 288 (585)
.+ +++| .| -..+..-+.+.|.+.+|.-
T Consensus 348 c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGIm 427 (1075)
T KOG2082|consen 348 CDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIM 427 (1075)
T ss_pred cccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceee
Confidence 00 0000 00 0113333455567889999
Q ss_pred HHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHH------HhCcHHHHHHHHHHHH
Q 007913 289 MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFR------QIGMNWAKYLVSVCAL 362 (585)
Q Consensus 289 ~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 362 (585)
+.++.+++.|||+|++|.+.+.+.+.+..+|+...+.+..+...-.+.+.. -+... ...+ .-.+++.++.+
T Consensus 428 aGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKf--G~sv~g~lVva~laW-PsPwVi~IGsF 504 (1075)
T KOG2082|consen 428 AGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKF--GQSVGGNLVVATLAW-PSPWVIVIGSF 504 (1075)
T ss_pred ecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhh--hhhccCcEEEEEecC-CCceeeehhHH
Confidence 999999999999999999999999999999999988887766532222110 00000 0011 13467788999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007913 363 KGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFML 440 (585)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 440 (585)
+|++++.+.++.+++|++++.|||+.+| +.|+|.. ++|.|.+|++++.+++...+++++.+.+..+.++.++.+|.+
T Consensus 505 lST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~f 583 (1075)
T KOG2082|consen 505 LSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLF 583 (1075)
T ss_pred HHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999987 889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-ccCCCCCCCchhHH-HHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 007913 441 MAIALLVRRY-YEKDVTPKNNLVKF-LVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLW 518 (585)
Q Consensus 441 ~~~~~l~~r~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (585)
+++++.+.-. +-|.+++++|.+.| +++++..+|.++++..-| .+..+...+..++|.+..++.....|
T Consensus 584 VNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SW----------yyAlvAm~~a~~IYKYiEykGAeKEW 653 (1075)
T KOG2082|consen 584 VNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSW----------YYALVAMLIAGVIYKYIEYKGAEKEW 653 (1075)
T ss_pred HhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhccccchh
Confidence 9998876554 56888888888888 899999999999999988 56666777788888887765554443
|
|
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=257.84 Aligned_cols=339 Identities=14% Similarity=0.102 Sum_probs=268.3
Q ss_pred HHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHH
Q 007913 86 WLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIL 165 (585)
Q Consensus 86 ~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 165 (585)
++.+++++|+|++..|+..... +++.+++..+++++.+...+++++|+++++|++||.|.|.++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567889999999999987654 555667778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 007913 166 LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCV 245 (585)
Q Consensus 166 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 245 (585)
+......+++....++++...++...... . ......+++.+++..++++|.|..+|+|.+++..++..
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~-------~-----~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~ 150 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFP-------W-----SARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIA 150 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCC-------c-----cHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHH
Confidence 98888888888888888877765111100 0 12356677777888999999999999999999999999
Q ss_pred HHHHHHhheecccCCCCCCCC--CcChhHHHHHHHHHHHHhhcHh-HHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 007913 246 IVFVIIVGFVHGKTTNLDPFL--PYGTEGVFEAAAVVYWSYTGFD-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLM 322 (585)
Q Consensus 246 ~~~~~i~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~G~e-~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~ 322 (585)
++++++.++.+.+.+|+.+.. +.++.++..++...+++| |+| ..+.+.+|+|+++|++||+++.+..++.++|++.
T Consensus 151 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~ 229 (381)
T TIGR00837 151 FALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILW 229 (381)
T ss_pred HHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777776666654432 235667788888888888 564 6888899998779999999999999999999999
Q ss_pred HHHHHhccccccccc-------ccHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhh
Q 007913 323 ALALTMMVKYTEIDM-------NAAYSIAFRQ-IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFA 394 (585)
Q Consensus 323 ~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~ 394 (585)
.....+..|.+++.+ .+++.++.+. .++++...++.++..++..++.++...+.++. +++.++
T Consensus 230 ~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~ 300 (381)
T TIGR00837 230 QLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFK 300 (381)
T ss_pred HHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhC
Confidence 999999999887641 2466666664 57778889999999999999999988777744 444455
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 395 LVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVR 448 (585)
Q Consensus 395 ~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 448 (585)
+.|++++ |..+.+++.+...+++.+.+-..+..+...+....+....+..+..
T Consensus 301 ~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~ 353 (381)
T TIGR00837 301 FDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLA 353 (381)
T ss_pred CCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444434 6778888888888888776666667777777666666666665544
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=238.66 Aligned_cols=395 Identities=17% Similarity=0.180 Sum_probs=307.2
Q ss_pred ccChhHHHHHhhc-ccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHhch
Q 007913 78 CLTWWDLTWLCFG-SVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVELGD 154 (585)
Q Consensus 78 ~l~~~~~~~i~~~-~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~g~ 154 (585)
++|+++.++.-.. ++...=+|...|.++.+ +|.. .++-++++-.+.+++.++.+.++++-- +.||.|+.++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 7888776654322 33444578899999877 8875 677778888888999999999999877 788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
.+|.-.|..+++++++.++.++.++.+-+.+.++ .....- -....+|..+++..+.+..++.++..+++.|....+|.
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG-~~a~g~-sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFG-KEAQGA-SGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKA 222 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC-ccccCC-cccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999999999999999999999999999999887 222110 11124678888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhheecccCCCC------------------CCCC-----------------CcChhHHHHHHHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKTTNL------------------DPFL-----------------PYGTEGVFEAAAV 279 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------~~~~-----------------~~g~~~~~~~~~~ 279 (585)
.++..+...+.+....+..+..++..+. +++. ..+...+-..+..
T Consensus 223 s~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV 302 (945)
T KOG1288|consen 223 SNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGV 302 (945)
T ss_pred hhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhee
Confidence 9888776666665555554443322211 1110 0111235555666
Q ss_pred HHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHH
Q 007913 280 VYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSV 359 (585)
Q Consensus 280 ~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (585)
.+-+-+|.-+.++|++|.|+|.|.+||+.+.++..+++.|++..+......|...+.++-.+ +... ..-..++.+
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v---~~~i--sl~p~fi~i 377 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDV---MMHI--SLHPPFILI 377 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhh---eeec--cccchHHHH
Confidence 67788999999999999999999999999999999999999999999888887766554322 2211 112345667
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007913 360 CALKGMTTSLLVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSI 437 (585)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 437 (585)
+.+.+.+.+.++.+.++||++.++|||+.+| -.|+|...+.+.|+.|+.++.+++-+..+.+++|.+.++.++.++++
T Consensus 378 Gi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlt 457 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLT 457 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777888888899999999999999999999 67888888899999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHhcc-CCCCCCCchhHH-HHHHHHHHHHHhHHhh
Q 007913 438 FMLMAIALLVRRYYE-KDVTPKNNLVKF-LVCLTVVVASSIGITA 480 (585)
Q Consensus 438 ~~~~~~~~l~~r~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 480 (585)
|..++++++.++... |+-++.++...| .+.++.+.+..++++.
T Consensus 458 y~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvV 502 (945)
T KOG1288|consen 458 YGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVV 502 (945)
T ss_pred HHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhhee
Confidence 999999999998865 554555665555 4555555555554443
|
|
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=207.88 Aligned_cols=285 Identities=15% Similarity=0.165 Sum_probs=233.6
Q ss_pred ccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHH
Q 007913 78 CLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (585)
Q Consensus 78 ~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 157 (585)
++|.+|.+++.++.++|+|++..|+..++. +|+.++++++++++.+++.+++++|+++++|+. +.+.|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 589999999999999999999999988776 888899999999999999999999999999987 799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007913 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (585)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (585)
++.+|.+++......+......++++..... .+.+ .....+.+++++...+..|.|..+|++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~tp---------------~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i 143 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLL-PRTP---------------IIVIIILIIIVSIYIVRKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC---------------HHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999988888877888888888776543 1111 23667777888889999999999999999
Q ss_pred HHHHHHHH-HHHHHHhheecccCCCCCCCCCcChhHHHHHHH-HHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHH
Q 007913 238 SSIVSSCV-IVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAA-VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMI 315 (585)
Q Consensus 238 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~ 315 (585)
+..+++.. ++++........+.+|..|..++|+.+.+.+.. ...++|.|+|......+|+||| |+.||++..+..++
T Consensus 144 ~~~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~ 222 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIG 222 (359)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHH
Confidence 99888777 344444444455677888888888888888876 7889999999999999999997 57999999999999
Q ss_pred HHHHHHHHHHHHhccccccccc-ccHHHHHHHHhCcH-H---HHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007913 316 TAVYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMN-W---AKYLVSVCALKGMTTSLLVGSLGQARYTT 381 (585)
Q Consensus 316 ~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l~ 381 (585)
+++|.+..+...+..+.++.+. ..|..+..+....+ . ...++......+.+.....+++..++.+.
T Consensus 223 ~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 223 VLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999898887764 45888888855433 2 22344445555666666667777777654
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=209.29 Aligned_cols=392 Identities=16% Similarity=0.223 Sum_probs=313.8
Q ss_pred ccccChhHHHHH-hhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHh
Q 007913 76 QKCLTWWDLTWL-CFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVEL 152 (585)
Q Consensus 76 ~r~l~~~~~~~i-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~ 152 (585)
+-++|+|+.++. ++-++.|.-+|...+++.++ +|.+ .++...++.++++.++++..-++++-- ++||.|..+++.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 446999999887 56677899999999999988 8886 778788889999999999999999887 8999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
|+..|...|..|.++...+++.+..++++.+..++. .. +...++.++.+..+++..+|..|+++..
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~-~~-------------s~~~i~gi~~vt~~ill~i~~ag~~w~~ 171 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFE-TE-------------SKEMIDGIGSVTVLILLAINVAGVEWEA 171 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHH-hc-------------cHHHhcchhHHHHHHHHHhhhccchhHH
Confidence 999999999999999999999999999999999987 22 1112345788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccc-CC---------CC-CCCCCc--ChhHHHHHHHHHHHHhhcHhHHhhhhhhhcC
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGK-TT---------NL-DPFLPY--GTEGVFEAAAVVYWSYTGFDMVATMAEETKK 299 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~---------~~-~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 299 (585)
++|.++..+.++.+.-+++..+...+ .+ ++ +++.|+ .-..++..+...+.+.+|.-+..+++++.|+
T Consensus 172 k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~ 251 (643)
T KOG2083|consen 172 KLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKD 251 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCC
Confidence 99999998888888777766554322 00 01 011121 0134666677778899999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc-----cc----HHHHHHHHhC-cHHHHHHHHHHHHHHHHHHH
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM-----NA----AYSIAFRQIG-MNWAKYLVSVCALKGMTTSL 369 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 369 (585)
|++++|++...++.....+|..+..-.....-.+.... .. .+.+-++... ..........+...+.+++.
T Consensus 252 Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsa 331 (643)
T KOG2083|consen 252 PQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSA 331 (643)
T ss_pred chhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHH
Confidence 99999999999999999999887766544333222211 11 2222222111 12223455667777888888
Q ss_pred HHhhhhhhHHHHHHHhcCCCc--hhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 370 LVGSLGQARYTTQIARAHMIP--PWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLV 447 (585)
Q Consensus 370 ~~~~~~~sR~l~~~ardg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 447 (585)
.+++.+++++++++.+|+..| .+|+|-.++++.|.++..++..++..++..+..+.+..+.+...+..|...+.+++.
T Consensus 332 lsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~ 411 (643)
T KOG2083|consen 332 LSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFH 411 (643)
T ss_pred HHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhh
Confidence 999999999999999999999 788898999999999999999999988889999999999999999999999999998
Q ss_pred HHhccCCCCCCCchh--HHHHHHHHHHHHHhHHhhhc
Q 007913 448 RRYYEKDVTPKNNLV--KFLVCLTVVVASSIGITAFW 482 (585)
Q Consensus 448 ~r~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 482 (585)
.+...++.+|+.... +|...++.+.|..+++..-|
T Consensus 412 aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFli~w 448 (643)
T KOG2083|consen 412 ASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFLISW 448 (643)
T ss_pred hhhccccccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766664433 47899999999998888877
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-18 Score=175.42 Aligned_cols=335 Identities=13% Similarity=0.152 Sum_probs=251.0
Q ss_pred hcccccccchhccHHhHhhccC-h-h-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHH
Q 007913 89 FGSVVGSGIFVITGQEAKKHAG-P-A-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNIL 165 (585)
Q Consensus 89 ~~~~ig~gi~~~~~~~~~~~~G-~-~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 165 (585)
++.-+|+|.+..|...... +| . . ++++|+++++...+.+++ +.|++||.|++.++.+||..|++.+|..+
T Consensus 5 FamffGAGNlIfPp~lG~~-aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLA-AGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHhhhHHhhhHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 3344789999999988877 55 3 2 788999999999888887 78999999999999999999999999777
Q ss_pred HHHH-HH----HHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Q 007913 166 LEAV-VG----AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSI 240 (585)
Q Consensus 166 l~~~-~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~ 240 (585)
+..- .. .+..+...+ +...++ ... ......+..+++..+..++++++.|...+++++++.
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~-~~~------------~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLH-SPT------------SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccC-ccc------------chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 5433 22 233333222 333333 100 001123566677777778999999999999999999
Q ss_pred HHHHHHHHHHHhheecccCCCCCCCCCcCh-hHHHHHHHHHHHHhh-------cHhHHhhhhh-hhcCCCCChhhHHHHH
Q 007913 241 VSSCVIVFVIIVGFVHGKTTNLDPFLPYGT-EGVFEAAAVVYWSYT-------GFDMVATMAE-ETKKPSRDIPIGLVGS 311 (585)
Q Consensus 241 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~p~r~~p~ai~~~ 311 (585)
++++.++++++.++.+...+...+..+... ..+..++.-..+.+. |+-....+.+ |.|||+|+.|+.+..+
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G 222 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAG 222 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999998887643221111111111 347777888888888 9888888888 9999999999999999
Q ss_pred H-HHHHHHHHHHHHHHHhcccccccc----cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Q 007913 312 M-CMITAVYCLMALALTMMVKYTEID----MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARA 386 (585)
Q Consensus 312 ~-~~~~~~y~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ard 386 (585)
+ ..+...|+...++..+..+.++.. .++.+.++.+...|+.+..++.+...++++++.++...+.++
T Consensus 223 ~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~-------- 294 (378)
T TIGR00796 223 LIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE-------- 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 9 666777888888887777655443 234667777788889999999999999999999998877554
Q ss_pred CCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccCCCCCCCc
Q 007913 387 HMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLV--RRYYEKDVTPKNN 460 (585)
Q Consensus 387 g~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~--~r~~~~~~~~~~~ 460 (585)
+|+|.++| +|+++.++...+...+.....++.+.++..-...+.|-+.....+. +|++.|+.+|++|
T Consensus 295 -----~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~ 363 (378)
T TIGR00796 295 -----YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQ 363 (378)
T ss_pred -----HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeee
Confidence 46677654 9999999888888777777789999998888777888777666665 7777777666655
|
transmembrane helical spanners. |
| >PHA02764 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=165.81 Aligned_cols=279 Identities=11% Similarity=0.099 Sum_probs=175.1
Q ss_pred hcCCccccccChhHHHHHhhcccccccch-hccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH
Q 007913 70 ESKQPLQKCLTWWDLTWLCFGSVVGSGIF-VITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL 148 (585)
Q Consensus 70 ~~~~~l~r~l~~~~~~~i~~~~~ig~gi~-~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~ 148 (585)
++.+++-|+.+.+|.+...++.+.+ |.- ..+........|...+++|+++++++++.+++|+|+++++|++||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~-Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGI-LSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhcc-chhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh
Confidence 3677899999999999999987732 221 11222222224555889999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 149 RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
+|++||.+|++.||..|+.+..+.+..+-.-. ++ +. . .+.+.. ..+-.- ......+...|.
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~~--~~-i-~~~~~~------------f~~~~s-~~~i~~~i~~~~ 144 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVL--LN--FN-I-QNQFEQ------------FLIVES-LFPIVLLIIANK 144 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheee--ee--ee-e-HHHHHH------------HHHHHH-HHHHHHHHHccc
Confidence 99999999999999999998887766432110 00 00 0 000000 011111 112222333567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcCh-hHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhH
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGT-EGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIG 307 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~a 307 (585)
|..+|...++.....+ +.-+...+.-|+.. .+... .....+...-.-.|.=.|+..+.++|.||-+|....+
T Consensus 145 ~~~~~~v~il~~a~~i------~aif~~~~s~n~~~-~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~g 217 (399)
T PHA02764 145 KIYAKIVDILAIAQII------IAIFIAFKSFNFQY-QNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIG 217 (399)
T ss_pred HHHHHHHHHHHHHHHH------HHHHhhccceeEEE-cceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhh
Confidence 7777776664433332 11111122222210 01111 1245555555667777899999999999999888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC
Q 007913 308 LVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 308 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg 387 (585)
-..+...+.++-+..+. + + . .++.+.+....++-+....-..||+.++|+-|+
T Consensus 218 yf~s~~~~~~~~ii~sy--------~-----n-~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~ 270 (399)
T PHA02764 218 YFVSYGIVAILSIIDSY--------S-----N-L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDK 270 (399)
T ss_pred hHHHHHHHHHHHHHHhh--------h-----h-H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhh
Confidence 77776665554443321 0 0 1 111111233333444445556899999999999
Q ss_pred CCchhhhccCCCCCchH
Q 007913 388 MIPPWFALVHPKTQTPI 404 (585)
Q Consensus 388 ~lP~~~~~~~~~~~~P~ 404 (585)
.+|++|+|+|| ++|+
T Consensus 271 ~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 271 VLPEKFSKINP--NVLL 285 (399)
T ss_pred hchHHHhccCC--Ccee
Confidence 99999999984 6787
|
|
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-17 Score=167.18 Aligned_cols=353 Identities=16% Similarity=0.165 Sum_probs=265.5
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
|+-+.+...++..|+.+|+|++..|-.... +|- ...+..+++..++...++.++|...+.|+..+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 456778899999999999999999977643 564 37788889999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Q 007913 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLN 235 (585)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~ 235 (585)
++++.+..+++.......++..+.++.+.+.++......+ .......++.+++..+.+.|.|...|++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~------------~~~~~~~~f~~i~~~iv~~g~~~v~~~n 146 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDL------------SPWLSSLLFTIIFGGIVYFGTKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCC------------cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999998888888888999999999988872111111 1235666677777888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhheecccCCCCCCC--CCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHH
Q 007913 236 WISSIVSSCVIVFVIIVGFVHGKTTNLDPF--LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (585)
Q Consensus 236 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 313 (585)
..+...+++.++.+.+..+.+.+.+|.... .+..+...+.+++..+++|.-...++.+.+..++-+|+++|++..+..
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~ 226 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSL 226 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHH
Confidence 999999999999999988888887776542 234567788899999999999999999999998767889999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccc----cc---cHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 007913 314 MITAVYCLMALALTMMVKYTEID----MN---AAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (585)
Q Consensus 314 ~~~~~y~l~~~~~~~~~~~~~~~----~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ar 385 (585)
+..++|++-..++.+..|.++.. .+ +++....+ ..++++...+..+...++..+|..+...+....+...
T Consensus 227 i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-- 304 (394)
T PF03222_consen 227 IPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-- 304 (394)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999888888877642 12 24444444 4567888888999999999999999888877766432
Q ss_pred cCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccC
Q 007913 386 AHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF--SSLNILSSVFSFSTLSIFMLMAIA-LLVRRYYEK 453 (585)
Q Consensus 386 dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~-~l~~r~~~~ 453 (585)
|.+.+++.+ -.....++.+...+++.. ..|....+..+....+.+.+.... ..+.|++++
T Consensus 305 -------~k~~~~~~~-r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 305 -------FKLKNNSSG-RLKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred -------HcCCccccc-hHHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHcccC
Confidence 222111111 123344455555555555 335555555554444444443333 334444443
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-17 Score=167.07 Aligned_cols=289 Identities=13% Similarity=0.117 Sum_probs=220.2
Q ss_pred hHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHH----HHhhhhccC-CCchhHhHHHHhchhH
Q 007913 82 WDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCY----TEFAVEIPV-AGGSFSFLRVELGDFV 156 (585)
Q Consensus 82 ~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~----~el~s~~P~-~Gg~y~~~~~~~g~~~ 156 (585)
+.......++++|+|++..|... |..+++.++++++++++.++.+ .|.....|. ..+.++++++.+||.+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNW 80 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHH
Confidence 34556677888999999999752 3344666667666666655554 444333344 6789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Q 007913 157 AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNW 236 (585)
Q Consensus 157 g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~ 236 (585)
|.+.++.|++........++....+.+...+..... .+.+ ...+.++.+++.+..++..|.|...|++.
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~-------~~~p----~~~i~~lilv~il~~iv~~G~~~i~r~~~ 149 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLG-------TAPP----LRGLLSLALILILVAIMSFGEKLLFKIMG 149 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCc----HHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 999999999999999888888887777776641000 0000 11256667777778999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheecccCCCCC--CCCCcChhHHHHHHHHHHHHhhcHhHHhhhh----hhhcCC---CCChhhH
Q 007913 237 ISSIVSSCVIVFVIIVGFVHGKTTNLD--PFLPYGTEGVFEAAAVVYWSYTGFDMVATMA----EETKKP---SRDIPIG 307 (585)
Q Consensus 237 ~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~p---~r~~p~a 307 (585)
++...+++.++.+.+..+.+.+.+|.. +.....+..++.++...+|+|.|+|..++++ +|.+|| +|+..|+
T Consensus 150 il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~ 229 (397)
T TIGR00814 150 PLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRI 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHH
Confidence 999999998888888888888877764 2222345678999999999999999999998 777655 4677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccc----c-cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 308 LVGSMCMITAVYCLMALALTMMVKYTEIDM----N-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 308 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
+..+..+..++|+...+.+.+..++++... + +.+....+....+....+..+...++..+|..+...+....+..
T Consensus 230 i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~ 309 (397)
T TIGR00814 230 MKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNG 309 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999888877532 2 22333444667788888888888888888888888888888777
Q ss_pred HHhc
Q 007913 383 IARA 386 (585)
Q Consensus 383 ~ard 386 (585)
+-++
T Consensus 310 l~~~ 313 (397)
T TIGR00814 310 IVLN 313 (397)
T ss_pred HHHH
Confidence 7643
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-15 Score=154.80 Aligned_cols=343 Identities=12% Similarity=0.051 Sum_probs=246.2
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
+.+...++..|+.||+|++..|-.... +|- .+.+..+++.+++..+++.+.|...++|..-+.-..+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 677789999999999999998876543 554 37788899999999999999999999998888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
+.+..+.+-.-....+|..+.++.++..++... .+ +. .....++.+.+++..+.+.|.|...|+++++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~-------~i---~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL--GY-------HA---NPRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cC-------CC---cHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 887777666666667777778888888775100 00 00 0125668888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhheecccCCCCCCCCC-cC----hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLP-YG----TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMC 313 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~g----~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~ 313 (585)
...+++.++.++.....+.+.++...... .+ +..++.+++..+++|.=...++.+..-.++-.|+++|+++.+..
T Consensus 156 ~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~ 235 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSL 235 (415)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHH
Confidence 99999988887777777776665542111 11 23467788888888888888888888887656789999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccc----ccc---HH-HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 007913 314 MITAVYCLMALALTMMVKYTEID----MNA---AY-SIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIAR 385 (585)
Q Consensus 314 ~~~~~y~l~~~~~~~~~~~~~~~----~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ar 385 (585)
+..++|++-..++.+..|+++.. +.+ .+ ....+...+++...+..+...++..+|..+...+....+..+-+
T Consensus 236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~ 315 (415)
T PRK09664 236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFK 315 (415)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988877642 111 22 22333556678888888888888888888877666666554332
Q ss_pred cCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007913 386 AHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALL 446 (585)
Q Consensus 386 dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 446 (585)
.+ + +.+-......++.+...++.++.+-..+..+.-.+.........+..+
T Consensus 316 ~~---------~-~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~l 366 (415)
T PRK09664 316 ID---------N-SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAV 366 (415)
T ss_pred CC---------C-ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 111122234456777777777755444444444444333333344333
|
|
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-15 Score=154.69 Aligned_cols=344 Identities=13% Similarity=0.035 Sum_probs=251.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
.|++.+.+...++..|+.||+|++..|-.... .|- .+....+++.+++..+++.+.|...++|+.-+....+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 35679999999999999999999998876543 554 377888999999999999999999999988889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|.+..+.+..+.+-.-....+|..+.++.+...++. .+ + +. .....++++.+++..+.+.|.|...|
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~--~-----~i-----~~~~~~llF~~~~~~iv~~gt~~vd~ 151 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MS--L-----NV-----PARAAGFGFALLVAFVVWLSTKAVSR 151 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cC--C-----CC-----cHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 998887777766665666677777788888887751 00 0 00 12367788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheecccCCCCCCC--CC-cChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHH
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF--LP-YGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVG 310 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~-~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~ 310 (585)
+++++...+++.++.++...+.+.+.+|.... .. ..+...+.+++..+++|.=...++.+.+..++-.|++.|+++.
T Consensus 152 ~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~i 231 (414)
T PRK10483 152 MTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHH
Confidence 99999999999888777776666665544321 11 1234577888899999998899999988887655689999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc----ccc---HHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 311 SMCMITAVYCLMALALTMMVKYTEID----MNA---AYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 311 ~~~~~~~~y~l~~~~~~~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
+..+..++|++-..++.+..|.++.. .++ .+....+ ..+.++...+..+...++..+|..+...+....+..
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877642 122 2323333 456678888888888889999888877777776665
Q ss_pred HHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007913 383 IARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAI 443 (585)
Q Consensus 383 ~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (585)
+-+-+ +++.+ ......++.+...++.+..+-..+..+.-.+.........+
T Consensus 312 ~~k~~---------~~~~~-r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~il 362 (414)
T PRK10483 312 LFGFD---------DSAMG-RFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIV 362 (414)
T ss_pred HhCCC---------Ccccc-ceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44321 11111 11234456777777777754444444444443333333333
|
|
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-14 Score=148.36 Aligned_cols=347 Identities=16% Similarity=0.154 Sum_probs=251.4
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
+.+...++..|+.+|+|++..|-.... +|.. +....++++.++...++.++|.....|+..+....+++.+||.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 567788899999999999999876643 5654 6777888888899999999998888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
+.+..+++.......+|..+.++.+...++..-.. +. ......+.+.++...+.+.|.|...|++.++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~-------~i-----~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTGI-------SM-----SPTAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC-------CC-----ChHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999988888888888888777776665410000 00 0124556666777778888999999999999
Q ss_pred HHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAV 318 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~ 318 (585)
...+++.++.+....+.+.+.+|+... +.+..-.+.+++..+++|.=...++.+....++-+|+++|++..+..+..++
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 999998888777777777777766421 1111237788889999999999999999998877789999999999999999
Q ss_pred HHHHHHHHHhcccccccc----ccc---HHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCc
Q 007913 319 YCLMALALTMMVKYTEID----MNA---AYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIP 390 (585)
Q Consensus 319 y~l~~~~~~~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP 390 (585)
|++-..++.+..|.++.. ++. +..+..+ ..+.++...+..+...++..+|..+...+....+..+-+.+
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--- 305 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--- 305 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---
Confidence 999999999999877642 121 3333333 56778888999999999999999998888888777654321
Q ss_pred hhhhccCCCCCchHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q 007913 391 PWFALVHPKTQTPINATLLVTTLSAIIALFS--SLNILSSVFSFSTL-SIFMLMAIALLVRRYY 451 (585)
Q Consensus 391 ~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~--~~~~l~~~~~~~~~-~~~~~~~~~~l~~r~~ 451 (585)
.+++.+ .....++.+...+++... .|....+..+.... +.+.+......+.|++
T Consensus 306 -----~~~~~r--~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 306 -----NTVGGR--LQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred -----ccccCC--chhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 011112 223445555565555553 34444455444332 2233333344444433
|
|
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-14 Score=145.31 Aligned_cols=287 Identities=14% Similarity=0.064 Sum_probs=229.7
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCC-chhHhHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRV 150 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~ 150 (585)
++.+++.+..+.+.+..++.+|+|++..|-... . +|-. .++..++++.++....+.+.|.....|+.. +.+.-+++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~-~-~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~ 80 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFG-G-GGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVED 80 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Confidence 345677888999999999999999999887552 2 5654 778889999999999999999999999884 99999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
.+||.++++.+..+.+.......++....++.+...++..-.. +........+++...+..+.+.|.+.
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~-----------~~~~r~~~~lif~~~~~~l~~~~~~~ 149 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL-----------NPLPRKLGSLIFALVLAFLSWLGTLA 149 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc-----------CCcchHHHHHHHHHHHHHHHHhchhH
Confidence 9999999999999999999999999999999998887721100 00123466777777778899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCC--C-CcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC-hhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF--L-PYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD-IPI 306 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~-~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~-~p~ 306 (585)
.-|.+..+...+++.++++......+.+.++.... . +..+..++.+++..+++|.+......+..|+|+++++ ++|
T Consensus 150 ~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k 229 (415)
T COG0814 150 VLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH
Confidence 99999999999999999888888887766655332 2 2456778999999999999999999999999988777 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc-------cccHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHh
Q 007913 307 GLVGSMCMITAVYCLMALALTMMVKYTEID-------MNAAYSIAFR-QIGMNWAKYLVSVCALKGMTTSLLVG 372 (585)
Q Consensus 307 ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (585)
++..+..+..++|+...+......+.+.-+ +......+.. ....+.......+..+.+..++..+.
T Consensus 230 ~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv 303 (415)
T COG0814 230 AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGV 303 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999999999999998888876322 2233444433 34555566666777777776665543
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-14 Score=144.65 Aligned_cols=285 Identities=15% Similarity=0.172 Sum_probs=238.4
Q ss_pred ccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHH
Q 007913 78 CLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVA 157 (585)
Q Consensus 78 ~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g 157 (585)
|+|.+|...+.+..++|.++...|+..++. +| .+|++.+++++..+..++.+..+.+++|+. ....+.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 478999999999999999999999998877 56 889999999999999999999999999975 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 007913 158 YIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWI 237 (585)
Q Consensus 158 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~ 237 (585)
.+.+..+.+.+....+.....+++.+...+- .+.+ ...+...+++.+......|.+..+|...+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l-p~TP---------------~~~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL-PETP---------------IWVIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCC---------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999988764 1222 23677777888889999999999999998
Q ss_pred HHHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHH
Q 007913 238 SSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITA 317 (585)
Q Consensus 238 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~ 317 (585)
...+.++.++.+........+.+|..|..+.|+..++.+.....+.|.|.|....+...+|||+ +..|....+..++++
T Consensus 142 ~~~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~ 220 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGL 220 (320)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHH
Confidence 8888888888788777888888899999999999999999899999999999999999999974 568999999999999
Q ss_pred HHHHHHHHHHhccccccccc-ccHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 318 VYCLMALALTMMVKYTEIDM-NAAYSIAFRQIGMN----WAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 318 ~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
++.+..+...+..+.++... .-|..+..+....+ -...++...-..+.+......++..++.+..
T Consensus 221 ~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 221 FLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888776544 45777777744322 2334444555556666666677777776554
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-13 Score=135.06 Aligned_cols=289 Identities=13% Similarity=0.100 Sum_probs=224.5
Q ss_pred HHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhc-cCCCchhHhHHHHhchhHHHHHHH
Q 007913 85 TWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEI-PVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 85 ~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~-P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
.....|+.+|+|++.+|-... . +|.. .++..+++..++...+..+.|..... |+..+.-..+++.+||.++.+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g-~-~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAG-F-GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHh-c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 366778889999999997653 2 5654 77778889999999999999999988 555678888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 007913 163 NILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVS 242 (585)
Q Consensus 163 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~ 242 (585)
.|++........|.....+.+.+.+. +. .+. ++. ...+.++++++++..+.+.|.|..-|++.++...+
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~-~q---l~~--~~~-----~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~ 171 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWE-NQ---LGF--APL-----NRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hh---cCc--CCc-----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99998888888888777777776533 00 000 000 12478888899999999999999999999999999
Q ss_pred HHHHHHHHHhheecccCCCCCCCC----Cc----Ch-hHHHHHHHHHHHHhhcHhHHhhhhhh----hc-----C-CCCC
Q 007913 243 SCVIVFVIIVGFVHGKTTNLDPFL----PY----GT-EGVFEAAAVVYWSYTGFDMVATMAEE----TK-----K-PSRD 303 (585)
Q Consensus 243 ~~~~~~~~i~~~~~~~~~~~~~~~----~~----g~-~~~~~~~~~~~~~~~G~e~~~~~~~E----~k-----~-p~r~ 303 (585)
++.++.+.+..+.+.+.+|+.... +. +. ..++.+++..+++|.=.-.++.++.. .+ | .+|+
T Consensus 172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 999999999999888877765211 11 11 24777888888888777777776655 42 2 2477
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccccccc----cccH-HHHHHHHhCc---------HHHHHHHHHHHHHHHHHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEID----MNAA-YSIAFRQIGM---------NWAKYLVSVCALKGMTTSL 369 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 369 (585)
..|++..+..+..++|++..+.+.+..++++.. ++.+ +....+..++ ++...+..+...++..+|.
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999988863 3335 5555665554 6788888888888999999
Q ss_pred HHhhhhhhHHHHHHHhc
Q 007913 370 LVGSLGQARYTTQIARA 386 (585)
Q Consensus 370 ~~~~~~~sR~l~~~ard 386 (585)
++...+..-.+..+.+.
T Consensus 332 lGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 332 FGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888888888887753
|
|
| >PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.1e-10 Score=113.33 Aligned_cols=292 Identities=15% Similarity=0.165 Sum_probs=192.9
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccC-------CCchh
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSF 145 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~-------~Gg~y 145 (585)
++-++++|.++.+..+++..+|.|-.......... +||+++....+.+++...+.++=.-|+.+|.+ .||..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 33456899999999999999999998888777766 99997666777788888888888888877763 37899
Q ss_pred HhHHHHhchhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHH
Q 007913 146 SFLRVELGDFV-AYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (585)
Q Consensus 146 ~~~~~~~g~~~-g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (585)
+|.++.+|.++ +.+.+......+... ....+...++.+...++ .+ ....++++.++..++
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-i~-----------------~~~~gi~l~~l~~~v 153 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG-IP-----------------PWITGIILAILVALV 153 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc-cc-----------------HHHHHHHHHHHHHHH
Confidence 99999998653 333333323333222 33334444444444333 11 136677777888888
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC---------CCCCc----ChhHHH------HHHHHHHHHh
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPY----GTEGVF------EAAAVVYWSY 284 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~----g~~~~~------~~~~~~~~~~ 284 (585)
..-|+|..+++...+..++.+.-++..+..+.. +.++.. .|.+. |..|.. .|+.=..|+-
T Consensus 154 i~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSN 232 (416)
T PF01235_consen 154 IFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSN 232 (416)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccC
Confidence 889999999999999888877665544443321 111111 23332 222211 2333334444
Q ss_pred ---hcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc---ccccHHHHHHHHhCcHHHHHHHH
Q 007913 285 ---TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI---DMNAAYSIAFRQIGMNWAKYLVS 358 (585)
Q Consensus 285 ---~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 358 (585)
.|.....|-+.|.++|.|.--.++.-..+-+.++..++.+.+.....++.. +...-...+++..-++++..++.
T Consensus 233 EAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~ 312 (416)
T PF01235_consen 233 EAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVA 312 (416)
T ss_pred CCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHH
Confidence 677888888899999988776777666665666666666665544332221 11222345666666688899999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 359 VCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
+..++-.+++.+++.+..-+.+.-+.
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888887766544
|
One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane |
| >KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.8e-10 Score=114.06 Aligned_cols=352 Identities=13% Similarity=0.137 Sum_probs=215.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCc-----hhHhH
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGG-----SFSFL 148 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg-----~y~~~ 148 (585)
.+|+-++++..+-.++.++|.|+..+|- +..+ .|.. .+...++.+++.+.++..+.+.-...+.-.| .-+..
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~-A~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPY-ALAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHH-HHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 4678999999999999999999998884 4445 7765 5888899999999999999999888887777 77777
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 149 RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 149 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
+++||+..-.++++...+.....+..+....++.+...++....+. ...+ ...+.+..+++. +....+...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~-------~~l~-~~~f~iif~~i~-~~~s~lp~~ 182 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLND-------NSLD-KQYFIIIFGLIV-LPLSQLPNF 182 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-------cccc-ceehhhhHHHHH-HHHHHCCCc
Confidence 8899988777888888777777777888888888888876211110 0000 011122111111 112223444
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccCC--CCCCCCCcChhHH-HHHHHHHHHHhhcHhHHhhhhhhhcCCCCChh
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTT--NLDPFLPYGTEGV-FEAAAVVYWSYTGFDMVATMAEETKKPSRDIP 305 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~g~~~~-~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p 305 (585)
.....+.....+..+.........+...+-.. ...+....+..+. +.++....|+|.|......+-..+|+|++ ++
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~ 261 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FK 261 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hh
Confidence 55555555555555555555555555544222 1111111112222 77888899999999999999999999977 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 306 IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQI-GMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 306 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
|+...+..+++.+|+..++.-+...+++..+ +..... ...|.....++.+.+-.+++..-...-..-..-.+.
T Consensus 262 ~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~ 335 (437)
T KOG1303|consen 262 KALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLI 335 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHh
Confidence 9999999999999999999877766654332 122222 355666666666666666544332222222222211
Q ss_pred hcCCCchhhhc-cCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 007913 385 RAHMIPPWFAL-VHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFS--TLSIFMLMAIALLVR 448 (585)
Q Consensus 385 rdg~lP~~~~~-~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~ 448 (585)
+ .-++.+.+ .+. .+.=.+... ......+-..++.|+.+.++.+.. ..+.+.+.++.++..
T Consensus 336 ~--~~~~~~~~~~~~-~R~~~Rt~~-v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 336 G--VKHPDFKKRSLV-LRLLVRTFF-VAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred c--cCCccccccccc-eeeehhhHH-HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11111221 100 111111111 111112222335677777777644 356777777776655
|
|
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.9e-09 Score=111.06 Aligned_cols=238 Identities=11% Similarity=0.101 Sum_probs=134.1
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHH----HhhhhccCCCch-------
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYT----EFAVEIPVAGGS------- 144 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~----el~s~~P~~Gg~------- 144 (585)
+.-+..+...-.+.+.+|.|++..|.... . +|.. .++..++.++++..+++.+. |...+.|+.+-.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~-~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFS-Q-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHH-H-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 34566666667888889999998887653 4 7754 66677777777777777655 456666654321
Q ss_pred -hHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHH
Q 007913 145 -FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGI 223 (585)
Q Consensus 145 -y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 223 (585)
..-..+.+||.++.+......+.....+..+....++.+.......+...| ..+++.+.+.+.
T Consensus 122 ~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~-------------~~i~~~v~~~~~--- 185 (473)
T PLN03074 122 WFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW-------------TYIFGACCATTV--- 185 (473)
T ss_pred HHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE-------------EeehHHHHHHHH---
Confidence 222334678888776654443333333333333322222221110111111 112222222222
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
-.+..|...++..+.....+.....+.+......+......-.+.+...++.++..++|+|.|.-....+-.|||||+ +
T Consensus 186 ~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~ 264 (473)
T PLN03074 186 FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-K 264 (473)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-c
Confidence 234455555555444443333222223333323222222111123455677778889999999999999999999995 6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007913 304 IPIGLVGSMCMITAVYCLMALALTMMVKYT 333 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 333 (585)
.++....+...+...|+...+..+...+++
T Consensus 265 F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 265 FKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 898888888888888888766655555543
|
|
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-08 Score=107.29 Aligned_cols=245 Identities=13% Similarity=0.108 Sum_probs=154.1
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHH
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAY 158 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~ 158 (585)
|..+..+-.+.+++|+|++..|.... . +|.. .++..++.++++......+.+.+.+ ++.-...+-.+..+||...+
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af~-~-~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAAN-S-SGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 55667777778889999998887653 3 6654 6666677777777777777776665 33345666667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 159 IAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 159 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
++....++.....+..+....++.+...+.......+.. ....+. .......+.+.+-+...+.++..+.+..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~---~~~~~r--~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK---QKSGNR--LLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh---hccCcE--EeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 999999888888889999999998888775221111100 000000 001111111222222345556665555444
Q ss_pred HHHHHHHHHHHHHhheecccCCCCC-----C-------CCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC-CChh
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNLD-----P-------FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDIP 305 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~~-----~-------~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-r~~p 305 (585)
....+...+.+++.......+++.. . .++ .....+.++....|+|.+.......-+|+|||. |+..
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFN-SGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEec-CchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 3332222222222222221111111 0 111 113577889999999999999999999999974 6788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccc
Q 007913 306 IGLVGSMCMITAVYCLMALALTMMVKYT 333 (585)
Q Consensus 306 ~ai~~~~~~~~~~y~l~~~~~~~~~~~~ 333 (585)
+.+..++.++.++|.+..+.-+...+++
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 9999999999999999998877666644
|
|
| >TIGR00835 agcS amino acid carrier protein | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-08 Score=104.65 Aligned_cols=286 Identities=14% Similarity=0.159 Sum_probs=177.0
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhcc---C----CCchhHhHH
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP---V----AGGSFSFLR 149 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P---~----~Gg~y~~~~ 149 (585)
+++|.++.+..+++..+|.|-.......... +||+++....+++++...+.+.-.-++.++. + .||..+|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 4699999999999999999844444444555 9998644445556666666666655665554 2 245558888
Q ss_pred HHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 150 VELG-DFVAYIAAGNILLEA-VVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 150 ~~~g-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
+.++ |++|.+.+.. .+.+ .......+...++.+...++ .+ .+..++++.++...+..-|
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~-~~-----------------~~v~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN-VP-----------------KLVTGIVLTVLTALIIFGG 184 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC-Cc-----------------HHHHHHHHHHHHHHHHhcC
Confidence 8766 7777776665 3343 34455556666666654333 11 2356666677777776679
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC---------CCCCcC----hhH------HHHHHHHHHHHh---h
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD---------PFLPYG----TEG------VFEAAAVVYWSY---T 285 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~g----~~~------~~~~~~~~~~~~---~ 285 (585)
.|..+++...+..+.....+...+..+. .+.+|.. .|.++. ..| +-.|+.=..|+- .
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~ 263 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGM 263 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhcccccc
Confidence 9999999999998877766444332222 2222221 222322 222 112333344544 6
Q ss_pred cHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc-c-cccHH-HHHHHHhCcHHHHHHHHHHHH
Q 007913 286 GFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI-D-MNAAY-SIAFRQIGMNWAKYLVSVCAL 362 (585)
Q Consensus 286 G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (585)
|....+|-+.|++||.|.--.++.--.+-+.++..++.+.+.....+++. + +...+ ..+++...++++..++.+..+
T Consensus 264 Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~ 343 (425)
T TIGR00835 264 GSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALF 343 (425)
T ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77888888999999987766666555554555566666654443323211 1 11222 345665455688899999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHH
Q 007913 363 KGMTTSLLVGSLGQARYTTQI 383 (585)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~ 383 (585)
+-.+++.+++.+..-+.+.-+
T Consensus 344 lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 344 LFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888887776654
|
Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+. |
| >COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-08 Score=98.98 Aligned_cols=291 Identities=17% Similarity=0.188 Sum_probs=200.1
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccC-------CCchhH
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPV-------AGGSFS 146 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~-------~Gg~y~ 146 (585)
+-++.+|.++.+..+++..+|+|-.......... +||+++....+.+++...+.++=+-|+..|.+ .||.-+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3467799999999999999999998888777766 99996655666677888888888888888862 479999
Q ss_pred hHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHH
Q 007913 147 FLRVELG-DFVAYIAAGNILLEAV-VGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (585)
Q Consensus 147 ~~~~~~g-~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (585)
|+++.+| |+.|.+.+....+++- ......+.+.++.+...++ .+ ....++++.++..++.
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~-~~-----------------~~~~gi~la~l~~~VI 198 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG-IP-----------------PLVTGIVLALLVALVI 198 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC-Cc-----------------HHHHHHHHHHHHHHHH
Confidence 9999998 4556666655555555 4667777777777777776 21 2377788888888888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCC---------CCCCCc----Chh------HHHHHHHHHHHHh-
Q 007913 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNL---------DPFLPY----GTE------GVFEAAAVVYWSY- 284 (585)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---------~~~~~~----g~~------~~~~~~~~~~~~~- 284 (585)
.-|+|..+++......+.-+.-++..+..+.. +.++. +.|.+. |.. .+..|+.-..|+-
T Consensus 199 ~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNE 277 (452)
T COG1115 199 FGGIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNE 277 (452)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccc
Confidence 99999999999888877665544433332221 11110 122222 111 2333444445655
Q ss_pred --hcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccc--cccHH-HHHHHHhCcHHHHHHHHH
Q 007913 285 --TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEID--MNAAY-SIAFRQIGMNWAKYLVSV 359 (585)
Q Consensus 285 --~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~ 359 (585)
.|....++.+.+++||.|.--..+....+-+.++...+.+.+.....++..+ +...+ ..+++..-++++..++.+
T Consensus 278 AGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i 357 (452)
T COG1115 278 AGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAI 357 (452)
T ss_pred ccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHH
Confidence 5677777888889999877655555544445566666666655544333222 22233 346667777899999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 360 CALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
...+-.+++.+++.+..-|.+.-+.
T Consensus 358 ~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 358 ALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888888776544
|
|
| >KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-09 Score=105.51 Aligned_cols=345 Identities=12% Similarity=0.102 Sum_probs=198.3
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh--HHHHHHHHHHHHHH---HHHHHHHhhhhccCC----------
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA--IVLSYLASGLSALL---SAFCYTEFAVEIPVA---------- 141 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~--~~~~~ll~~~~~~~---~a~~~~el~s~~P~~---------- 141 (585)
.-.+..+.+.--+-+++|+|++..|... .. +|.. .+...+++.+...+ ..-+.-+++++.-++
T Consensus 45 ~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 45 HPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 3467777777788888999999888765 33 6653 33344444444443 344556666664211
Q ss_pred --CchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHH
Q 007913 142 --GGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLV 219 (585)
Q Consensus 142 --Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (585)
-+.+.| .|.+||...+++-....+.+...+..+....++-+....+......+.. .....+.+..
T Consensus 123 a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~------------~~~i~~~~~~ 189 (449)
T KOG1304|consen 123 AMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSV------------RLYILIQLPP 189 (449)
T ss_pred HHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccH------------HHHHHHHHHH
Confidence 122235 6789999999999999999999999999999999988887222222211 1333333333
Q ss_pred HHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc-CCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhh
Q 007913 220 CNGIA-MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEET 297 (585)
Q Consensus 220 ~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 297 (585)
...+| .+..|..+-+..+.-++.++.++++....+.... .++...+ .++.++...+..++|+|-|.-.+..+=+++
T Consensus 190 ~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLPlEn~M 267 (449)
T KOG1304|consen 190 LLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLPLENSM 267 (449)
T ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccc--cchhhhHHHHHHHHHHhccceEEEehhhcc
Confidence 33333 3455555555555555555555444443333222 1122222 236778888889999999999999999999
Q ss_pred cCCCCChh---hHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhh
Q 007913 298 KKPSRDIP---IGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSL 374 (585)
Q Consensus 298 k~p~r~~p---~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (585)
|+|+ ++| ..+-.++.+++++|....+.-+...+++..++-. -+....+....+.+...++.+-+.--.++
T Consensus 268 k~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------LNLP~~~l~~~Vkl~~ai~I~ls~pLQ~y 340 (449)
T KOG1304|consen 268 KKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------LNLPQEILSQTVKLLLAIAIFLTYPLQFY 340 (449)
T ss_pred cChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------ecCCccHHHHHHHHHHHHHHHHcCchhhh
Confidence 9994 677 9999999999999999988877666655433100 01112233333344444444444334445
Q ss_pred hhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHhc
Q 007913 375 GQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIAL-FSSLNILSSVFSFSTL--SIFMLMAIALLVRRYY 451 (585)
Q Consensus 375 ~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~-~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~r~~ 451 (585)
..-++++.- +.+++++ ++++=.+..-=....+++..++. +++++.++++.+.... +.+++..+--+...+.
T Consensus 341 v~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~ 414 (449)
T KOG1304|consen 341 VPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYP 414 (449)
T ss_pred hhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcc
Confidence 555555432 2233331 10000111111111222222222 4788888888886554 4444444444444433
|
|
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-07 Score=97.73 Aligned_cols=330 Identities=13% Similarity=0.033 Sum_probs=158.0
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++.+|+-++++.+.+=++..+..+.+...+......-+. .++++.+++.++........+..+.++-. +.....+..
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~s 98 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRAS 98 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHHH
Confidence 444688999998888777665544442333333221122 25555666555555554444444444332 466778889
Q ss_pred hchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccC-CCCCc-chHHHHHHHHHHHHHHhhhh
Q 007913 152 LGDFVAYIAAGNIL-LEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFA-DGFNL-LDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 152 ~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~i~~~g~ 228 (585)
||.+.+.+.+.... +..+.-.+......++.+...+....+ .+.......+ ..... ..+..+++.++.+.+...|.
T Consensus 99 FG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~-~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~ 177 (484)
T PRK11375 99 YGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWP-GFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGG 177 (484)
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccccCCCcHHHHHHHHHHHHHHHHHHHcCH
Confidence 99877676666552 344444444444445554443321110 0000000000 00000 11233344455666667899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCc-------ChhHHHHHHHHHHHHhh-cHhHHhhhhhhhcCC
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPY-------GTEGVFEAAAVVYWSYT-GFDMVATMAEETKKP 300 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~-G~e~~~~~~~E~k~p 300 (585)
|...+++.+...+.++..+.+.+..+...+.+......+. ....+..++...+=++. +.-..+.++...|++
T Consensus 178 ~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~ 257 (484)
T PRK11375 178 KVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSF 257 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCCh
Confidence 9999999888887766555544443333322211111111 12334444433222232 334566778888887
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHH-HhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH-HhhhhhhH
Q 007913 301 SRDIPIGLVGSMCMITAVYCLMALAL-TMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLL-VGSLGQAR 378 (585)
Q Consensus 301 ~r~~p~ai~~~~~~~~~~y~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~sR 378 (585)
+ +.-++...+..+...+.....+.. ............+|. ++....+......+..+..+++..++.. ..+++.+-
T Consensus 258 ~-~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~ 335 (484)
T PRK11375 258 R-AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVL-DIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGY 335 (484)
T ss_pred h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 4 445666666555544432222221 111111001123343 3333334344444455555666665543 34444433
Q ss_pred HHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHH
Q 007913 379 YTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALF 420 (585)
Q Consensus 379 ~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~ 420 (585)
- -.+.+||+. |.| ++.++.++++.++...
T Consensus 336 ~-----l~~l~pk~i---~~~-----~~~~i~~iig~~~~pw 364 (484)
T PRK11375 336 Q-----IAALAPTKL---TYK-----NGVLIASIISLLICPW 364 (484)
T ss_pred H-----HHHhCcCcc---chh-----hHHHHHHHHHHHhccH
Confidence 3 345667543 212 3555666666555544
|
|
| >PF13906 AA_permease_C: C-terminus of AA_permease | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.8e-10 Score=79.37 Aligned_cols=51 Identities=43% Similarity=0.785 Sum_probs=49.4
Q ss_pred CcccccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcccc
Q 007913 518 WGVPLVPWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLHAT 568 (585)
Q Consensus 518 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 568 (585)
||+|.+|++|+++++.|++++.+++..+|..+++|+++|++.|+.||+||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 688999999999999999999999999999999999999999999999986
|
|
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-06 Score=82.63 Aligned_cols=264 Identities=14% Similarity=0.071 Sum_probs=163.4
Q ss_pred HHhhcccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHH
Q 007913 86 WLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 86 ~i~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
+..++.++|+|. .+-..+.+ .-|+- +.++.++++++....+....|+++++. +...-++.++.+||.++-+.-.
T Consensus 10 f~~ig~~vGAGf-AsGqEi~Q-FF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 10 FAFIGTVVGAGF-ASGQEIMQ-FFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHhhcccc-cchHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHHH
Confidence 445567889884 33334443 35543 889999999999999999999999887 4567889999999999887755
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHH
Q 007913 163 NILLEAVVGAAGLARS-WSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG-TRRSSWLNWISSI 240 (585)
Q Consensus 163 ~~~l~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~~~~~~ 240 (585)
...+. .+..+....+ .++.+...++ .+. ++-+++++.+......++ .+..-+++.+.+.
T Consensus 87 ~iif~-lf~~~vVM~AGags~~~e~~~-lP~-----------------wiGali~i~~v~i~lfl~~vegi~tvn~iI~P 147 (349)
T COG3949 87 IIIFF-LFSTAVVMLAGAGSLLEEMFG-LPY-----------------WIGALIIILLVLILLFLGRVEGIITVNGIITP 147 (349)
T ss_pred HHHHH-HHHHHHHHhccchhHHHHHhC-ccH-----------------HHHHHHHHHHHHHHHHHhcccceeeeheeHHH
Confidence 44443 3444444443 4447777666 211 234456666666666666 7777777777776
Q ss_pred HHHHHHHHHHHhheeccc--CCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHH
Q 007913 241 VSSCVIVFVIIVGFVHGK--TTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAV 318 (585)
Q Consensus 241 ~~~~~~~~~~i~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~ 318 (585)
+.++.+............ ..+...-...+|..-..+ ....-..........+++|+|++ |+.-+|-..+-++.+++
T Consensus 148 ~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl 225 (349)
T COG3949 148 FLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVL 225 (349)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHH
Confidence 665553333222211111 111111111223222111 11111223444556777999996 67778888888888888
Q ss_pred HHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhh
Q 007913 319 YCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLG 375 (585)
Q Consensus 319 y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (585)
..+.+..+....+ +....+-|..++.++.. +....++.+.......++..+.+++
T Consensus 226 ~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 226 LFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887766544 33334558888888777 6666777777777777776665555
|
|
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-05 Score=80.93 Aligned_cols=218 Identities=11% Similarity=0.030 Sum_probs=112.2
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCC-chhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~~~g 153 (585)
+|+ +.++....-.+..+....+..-+.. ...-+.. ++++.+++.++........+-.+ |+.| ......+..||
T Consensus 8 ~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G---~k~G~~~~v~sR~~FG 82 (404)
T PRK11017 8 ARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIG---AKTGLSTHLLARFSFG 82 (404)
T ss_pred Hhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcCHHHHHHHHhc
Confidence 455 7777655544433322222222222 1112222 56666666555544444444444 4444 45667778999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
.+.+.+.+....+..+.-.+......+..+....+ .+. ....+++.++.......|.|...+
T Consensus 83 ~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~~-----------------~~~~~i~~~l~~~~~~~G~~~i~~ 144 (404)
T PRK11017 83 EKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LDI-----------------NLLIVLSGLLMTVTAYFGISALTI 144 (404)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CCH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888887766665555555555555554444443 111 122334445556667789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhheeccc-CCCCCCCCCcChhHHHHHHHHHH-HHhhcHhHHhhhhhhhcCCCCChhhHHHHH
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTEGVFEAAAVVY-WSYTGFDMVATMAEETKKPSRDIPIGLVGS 311 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~ 311 (585)
++++......+.++...+..+...+ .+......+.+...+..++...+ +...+.-..+.++...|++++ .-.+...+
T Consensus 145 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~~~~~~lg 223 (404)
T PRK11017 145 LSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-AVLATMVA 223 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-eeehhHHH
Confidence 9998877666655444332222211 11111111222233444443322 223444566778888888653 33555555
Q ss_pred HHHHHH
Q 007913 312 MCMITA 317 (585)
Q Consensus 312 ~~~~~~ 317 (585)
..+...
T Consensus 224 ~~i~~~ 229 (404)
T PRK11017 224 FFLGNS 229 (404)
T ss_pred HHHHHH
Confidence 444433
|
|
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.3e-05 Score=80.21 Aligned_cols=169 Identities=11% Similarity=0.025 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 007913 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192 (585)
Q Consensus 113 ~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (585)
++++.+++-++.......+++++.+...+ ...-.+..||.+.+.+.....++.++.-.+......++..... +
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~---- 126 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T---- 126 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C----
Confidence 56666666666666666666665544432 3444566899988888777777766555555544444431111 1
Q ss_pred ccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc-CCCCCCCCCcChh
Q 007913 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-TTNLDPFLPYGTE 271 (585)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~g~~ 271 (585)
+.+ .....++..++.++..++|.|...+++++.....+...+......+...+ .+....-.|..+.
T Consensus 127 --------~~~-----~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (442)
T COG1457 127 --------GLP-----VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPL 193 (442)
T ss_pred --------CCc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcch
Confidence 011 12444555667788888999999999999998877776655555443121 1111111244455
Q ss_pred HHHHHHHHHHHHhhcH-hHHhhhhhhhcCCC
Q 007913 272 GVFEAAAVVYWSYTGF-DMVATMAEETKKPS 301 (585)
Q Consensus 272 ~~~~~~~~~~~~~~G~-e~~~~~~~E~k~p~ 301 (585)
.+..++..++=.+..+ -.++.++.-.|+|+
T Consensus 194 ~fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 194 SFLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 5666665554334333 44566666677664
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.3e-10 Score=115.43 Aligned_cols=355 Identities=14% Similarity=0.128 Sum_probs=199.1
Q ss_pred cccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhcc---CCCchhHhHHHHh
Q 007913 77 KCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIP---VAGGSFSFLRVEL 152 (585)
Q Consensus 77 r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P---~~Gg~y~~~~~~~ 152 (585)
|+-|.++.....+++++|+|++..|.... + +|.. .++..++.++++..+...+.|.....| +.-...+-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~-~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA-Q-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH-H-hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 46788999999999999999998887664 3 6764 777788888888899999999988765 3334444457899
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHH-hhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA-MSGTRRS 231 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~g~~~~ 231 (585)
||+.+++......+.....+..+....++.+....+...+. . ..+. ....++..++...+. .+..+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~-------~~~~---~~~~~i~~~i~~pls~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-L-------FISR---YVWIIIFALIVLPLSFLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-c-------cccc---cccccccccccccccccchhhHH
Confidence 99999988887777777766666666677666665521110 0 0000 011111111111222 1223333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheec--ccCCCCC---CCCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCC--Ch
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVH--GKTTNLD---PFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSR--DI 304 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r--~~ 304 (585)
..+..+.....+..+.+........ .+..+.. .+....+.++..++....|+|.+......+.+|+|+|+| +.
T Consensus 148 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~ 227 (409)
T PF01490_consen 148 RYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKM 227 (409)
T ss_pred HHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccc
Confidence 3332222222211111111111111 1111111 112234568899999999999999999999999999864 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007913 305 PIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMN-WAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (585)
Q Consensus 305 p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 383 (585)
.|+...+..+++++|.+..+......+++..+ .+..+.... +...+..+...+..+.+..-..+...+.+...
T Consensus 228 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~ 301 (409)
T PF01490_consen 228 KKVLSISMIICFIIYLLFGIFGYLAFGDSVQG------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL 301 (409)
T ss_pred ceeeeehhhhhhHHhhhhhhcccceeeeeecc------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhh
Confidence 59999999999999999998876665543211 222222221 23333344444444444333444444444443
Q ss_pred HhcC-----CCchhhhccCCCCCchHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC
Q 007913 384 ARAH-----MIPPWFALVHPKTQTPINATLLVTTLSAII-ALFSSLNILSSVFSFS--TLSIFMLMAIALLVRRYYEK 453 (585)
Q Consensus 384 ardg-----~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~-~~~~~~~~l~~~~~~~--~~~~~~~~~~~~l~~r~~~~ 453 (585)
-+.. ..++.- +.++..+.-.+.. ..+++.++ ....+++.+.++.+.. ..+.|.+.++.+++.+++++
T Consensus 302 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 302 LFKRAASSRDSPKNT-PSSRWLRYLIRII--LVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred eeccccccccccccc-cccceeeeeeecc--hhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 3221 111000 0000001111111 11122222 3336788888877643 36788888888887776654
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00023 Score=73.05 Aligned_cols=328 Identities=12% Similarity=0.086 Sum_probs=170.9
Q ss_pred CCccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHH
Q 007913 72 KQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRV 150 (585)
Q Consensus 72 ~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~ 150 (585)
.++.+|+.++++.+.+=.+.+.-.+-+...+...+...++. .+++.+++-++....+..-+..++++-. ..-...+.
T Consensus 34 ~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~Ra 111 (497)
T COG1953 34 TPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRA 111 (497)
T ss_pred CccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHH
Confidence 34557999999999987777665555555555555433444 7777777777666666555555554432 23455677
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhccc--ccCCCCCcchHHHH-HHHHHHHHHHhhh
Q 007913 151 ELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD--CFADGFNLLDPVAV-LILLVCNGIAMSG 227 (585)
Q Consensus 151 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~~~g 227 (585)
.||-+.+-+-..+-.+.-++--...+...+..++.++....+. +....+ ....... ...++. ++-++...+...|
T Consensus 112 SFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~-~~~~~~~~~~lg~tt-~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 112 SFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPS-LLIPNTLSPLLGLTT-LELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-cccCCccccccCCcH-HHHHHHHHHHHHHHHHHhcC
Confidence 8887666655555555445545555555555555555422111 211110 0111111 123333 3334445555679
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCC----cC---hhHHHHHHHHHH-HHhhcHhHHhhhhhhhcC
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLP----YG---TEGVFEAAAVVY-WSYTGFDMVATMAEETKK 299 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~g---~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~ 299 (585)
.+...|++.+...+..+..+.+.+....+.+..+.....| .+ +..++.++.... +-=+..-..+..+.+.|+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 9999999999999988888888887776655432221111 11 112222221111 111333445677777787
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc--ccHHHHHHHHhCcHHHHH-HHHHHHHHHHHHHHHHhhhhh
Q 007913 300 PSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM--NAAYSIAFRQIGMNWAKY-LVSVCALKGMTTSLLVGSLGQ 376 (585)
Q Consensus 300 p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 376 (585)
| |+.-++-++++-+...+.-+..+......- ..... -+| .++........... +..+..++++++...+.-..+
T Consensus 270 ~-~~~~~gq~~gLPv~~~l~~ligvv~tsa~~-~lyG~~~w~P-~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vs 346 (497)
T COG1953 270 Q-KAQIWGQLVGLPVNFALFSLIGVVVTSASY-ILYGETIWDP-LDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVS 346 (497)
T ss_pred h-hhhhhccchhhhHHHHHHHHHHhhHHHHHH-HhhCcccCCH-HHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 6 444556555555555555444444322110 00011 123 34455554443443 555666666666554433333
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHH
Q 007913 377 ARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIA 418 (585)
Q Consensus 377 sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~ 418 (585)
+-.=. .+.+||.... | ++-+++++++.+++
T Consensus 347 p~~D~----s~l~Pk~in~---k-----rg~liaA~ial~~~ 376 (497)
T COG1953 347 PGYDL----SALFPKYINI---K-----RGGLIAAIIALLIC 376 (497)
T ss_pred hHHHH----HHhcccccch---h-----hhHHHHHHHHHHHc
Confidence 32211 1466776652 2 23455555554443
|
|
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0014 Score=70.05 Aligned_cols=283 Identities=12% Similarity=0.068 Sum_probs=149.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHH---HHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
.|+++++-...-..++.++.+.+......... .|.. .+.+. ....+.....+.-+.++.++. +.-..++|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58888887777666766665555444333333 4433 11111 111112222333445555554 344789999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 152 LGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 152 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
||+. .....+....+..+...+....+.+..++..++ .+.. ..+.+..++...+...-|.|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~~~----------------~~iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-ISYE----------------TGLLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHH----------------HHHHHHHHHHHHHHHhccHHH
Confidence 9964 466666666665566667777777777777766 2210 012222223344555568887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecc-------------cCCCCCCCCCcChh--HHHHH-HHHHHHHhhcHhHHhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHG-------------KTTNLDPFLPYGTE--GVFEA-AAVVYWSYTGFDMVATMA 294 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~--~~~~~-~~~~~~~~~G~e~~~~~~ 294 (585)
..+.+.+-.++.++..+++.+..+... +++.+.+..+.++. ..... .....+...+.....+-.
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 260 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRC 260 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777776666655554443332222110 01111111111111 11111 111222333433333444
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH---HhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALAL---TMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLV 371 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (585)
=..||+ |+..|+..++......+++...+.- ....|. ..+++..++....+..++++..++.++.+.+.+++..+
T Consensus 261 ~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s 338 (483)
T PRK09442 261 MSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDS 338 (483)
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 446776 6778888887666555554433321 112232 12344566666777777888888888888888888777
Q ss_pred hhhhhhHH
Q 007913 372 GSLGQARY 379 (585)
Q Consensus 372 ~~~~~sR~ 379 (585)
.+.+.+-.
T Consensus 339 ~l~~~ss~ 346 (483)
T PRK09442 339 QLLQSSST 346 (483)
T ss_pred HHHHHHHH
Confidence 77666553
|
|
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00049 Score=72.67 Aligned_cols=244 Identities=11% Similarity=0.054 Sum_probs=123.8
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccCh-hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGP-AIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
++.+|+.++++.+.+=++..+...-+..-+......-+. .++++.+++.++........+..+.++-. ......|..
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~ 85 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRAS 85 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhh
Confidence 444677889998888776665433333322222110122 25666666666555555555555554443 356778889
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHH--HHHhhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCN--GIAMSGTR 229 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~g~~ 229 (585)
||.+.+.+.+....+..+.-.+..+...++.+...++...+.... .+.+......+..++..... +....|.|
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~-----~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~ 160 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLH-----LGNGMTTLELICFIIFWALVLVFLFFFGYK 160 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccc-----cCCcccHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 999988888888887777777777777777766665521110000 00000001123322322222 23455666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhheecccCCCCC-C----CCCcChhHHHHHHHHHH-HHhhcHhHHhhhhhhhcCCCCC
Q 007913 230 RSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-P----FLPYGTEGVFEAAAVVY-WSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~----~~~~g~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
...+.+.......++.++.++.......+..+.. . -.+.....++.++...+ +...+....+.++...|+++ +
T Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~-~ 239 (442)
T TIGR00800 161 IRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK-T 239 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc-c
Confidence 6666666555544444433332211111111111 1 11222344554444432 22234456778888888864 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMAL 324 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~ 324 (585)
..++...+.....+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~ 260 (442)
T TIGR00800 240 AIWGQFLALPGGFTLTCFFGI 260 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456666555555444444333
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00062 Score=71.21 Aligned_cols=285 Identities=12% Similarity=0.035 Sum_probs=154.3
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch-
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD- 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~- 154 (585)
.|+++++....-..++.++.+.+......... .|...++..+...+.....+..+.+.-++.+ .-..++|.++.||+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47888888877777777765555444433333 4533333223333344556666666655544 45789999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
....+.+....+..+...+....+.+..++..++ .+.. ..+.+...+.......-|.|...+.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~~~----------------~~~ii~~~i~~~Yt~~GG~~av~~T 142 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LDLY----------------LSLLLLGAITILYTVFGGLKAVVWT 142 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHH----------------HHHHHHHHHHHHHHHHcchHHHHHH
Confidence 5667777777777778888888888888888776 3210 1122222333344555688877777
Q ss_pred HHHHHHHHHHHHHHHHHhheeccc-------------C------CCCCC-CCCcC-hhHH---HHHHHHHHHHhhcHhHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGK-------------T------TNLDP-FLPYG-TEGV---FEAAAVVYWSYTGFDMV 290 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~-------------~------~~~~~-~~~~g-~~~~---~~~~~~~~~~~~G~e~~ 290 (585)
+.+-..+.++..+++.+..+.+.+ + +++.. ..+.. ...+ ..+.......+..-...
T Consensus 143 d~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 222 (407)
T TIGR00813 143 DTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHH
Confidence 766666555443333332221110 0 00000 00000 0011 01111110111110111
Q ss_pred hhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-H--Hhccc----ccc----cccccHHHHHHHHhCcHHHHHHHHH
Q 007913 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA-L--TMMVK----YTE----IDMNAAYSIAFRQIGMNWAKYLVSV 359 (585)
Q Consensus 291 ~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~-~--~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (585)
.+-.=-.||+ |+..|+...+.....+.+.+..+. + ....+ ..+ .+++..+.....+..+++..-++.+
T Consensus 223 ~qR~~a~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~a 301 (407)
T TIGR00813 223 VQRCLAAKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLA 301 (407)
T ss_pred hhHHHhcCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHH
Confidence 2222335664 678888888876665555443322 1 11222 111 1344566666777777888888888
Q ss_pred HHHHHHHHHHHHhhhhhhHHH
Q 007913 360 CALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 360 ~~~~~~~~~~~~~~~~~sR~l 380 (585)
+.+.+.+++..+.+.+.+-.+
T Consensus 302 gilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 302 AILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHHhhhhhHHHHHHHH
Confidence 888888888887777776653
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0023 Score=65.15 Aligned_cols=288 Identities=15% Similarity=0.052 Sum_probs=142.9
Q ss_pred hhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCCchhHhHHHHhchhHHHH
Q 007913 81 WWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP-VAGGSFSFLRVELGDFVAYI 159 (585)
Q Consensus 81 ~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P-~~Gg~y~~~~~~~g~~~g~~ 159 (585)
....+.-+.|+.+|.|-.-..++.+.+.+|.+-++-|++ .++..-.-...+|++---- +.+..-.|- +..++.....
T Consensus 11 rlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~-~l~~~~~~~~ 88 (439)
T COG0733 11 RLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFR-KLAPKKKWEW 88 (439)
T ss_pred HHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHH-HhccCccchh
Confidence 344445577888999988888888777566553333333 2233333344556543111 222222222 2222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccC--CccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh-hh
Q 007913 160 AAGNILLEAVVGAAGLARSWSSYLASMID----SNN--SDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR-SS 232 (585)
Q Consensus 160 ~g~~~~l~~~~~~a~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~ 232 (585)
.||.-.+........++...+=.+.+... ... .............+.......-.++.++..++..+|++. ..
T Consensus 89 ~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIE 168 (439)
T COG0733 89 IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIE 168 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHH
Confidence 44544444444444444333322222221 111 111111011111112112233355566667777789887 78
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeccc---------CCCCCCCCCcChhHHHHHHHHHHHHh-hcHhHHhhhhhhhcCCCC
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGK---------TTNLDPFLPYGTEGVFEAAAVVYWSY-TGFDMVATMAEETKKPSR 302 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~r 302 (585)
|.++++.....+.++++.+-.+.... ..+++...+ ...+..+...++|+. .|+.....++.-.++ +.
T Consensus 169 k~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~--~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~ 245 (439)
T COG0733 169 KANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTD--PKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KS 245 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc
Confidence 88898888777776666655443211 011222221 344667777787877 677766667666654 67
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHh---cccccccccc----cHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhh
Q 007913 303 DIPIGLVGSMCMITAVYCLMALALTM---MVKYTEIDMN----AAYSIAFRQIG-MNWAKYLVSVCALKGMTTSLLVGS 373 (585)
Q Consensus 303 ~~p~ai~~~~~~~~~~y~l~~~~~~~---~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (585)
|+++.-......-..+-++..+.+.. ....+.-+.. ..++.++.+.+ +.....++.....++.++|..+.+
T Consensus 246 ~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 246 DLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777776666665555544322 2222211111 24667777665 223334444444455555544433
|
|
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0051 Score=63.60 Aligned_cols=198 Identities=15% Similarity=0.123 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 007913 113 IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192 (585)
Q Consensus 113 ~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 192 (585)
++++.+++.++........+..+.++.. ......|..||++.+.+......+..+.-.+......++.++...+...+
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~ 108 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFG 108 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5666666665555544455554444332 46777888999999988888888888877788887788888777651101
Q ss_pred ccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCCCCcChhH
Q 007913 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPFLPYGTEG 272 (585)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~ 272 (585)
. .. ......++.++.......|.|...+++++...+..+..+........+.+.... +.+.+..+
T Consensus 109 ~-----------~~--~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s 173 (386)
T TIGR02358 109 E-----------ES--PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--WNRAGDMS 173 (386)
T ss_pred C-----------Cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--cCCCCCcc
Confidence 0 00 112223333456666778999999999999887777665555433333322111 11111122
Q ss_pred HHHHHHHHHHH-hhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 007913 273 VFEAAAVVYWS-YTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTM 328 (585)
Q Consensus 273 ~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~ 328 (585)
+..++....-. ..+.-..++++...|+|+ +.-++...+..+...+..+.......
T Consensus 174 ~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~ 229 (386)
T TIGR02358 174 FAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTL 229 (386)
T ss_pred HHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222111 122233677778888764 45577777666666655555554443
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0033 Score=64.68 Aligned_cols=313 Identities=14% Similarity=0.143 Sum_probs=167.2
Q ss_pred ccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHH
Q 007913 91 SVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLE 167 (585)
Q Consensus 91 ~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~ 167 (585)
.-.|+|-...|...-.. +|.. +.+++++.++..=..+..- .-+.||.+.=..+..||..|.+......+.
T Consensus 15 mFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvia------~~~~~~~~~~l~~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 15 MFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVIA------VAKSGGGIEDLASRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH------HhhcCCCHHHHhcccCcHHHHHHHHHHHHH
Confidence 33688888888877655 7753 5666777665543333221 122354555555667777776665332221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccchhcccccC-CCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 007913 168 AVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFA-DGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (585)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (585)
--. .-...+..+........ |..+ ++.....+..+++..+..++.+...|...++-++++.+.++.+
T Consensus 88 IGP-~~aiPRtaa~sfe~~i~-----------p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l 155 (427)
T PF05525_consen 88 IGP-LFAIPRTAAVSFEMGIA-----------PFFPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILL 155 (427)
T ss_pred HHh-cccCcchhhhhHHHhhh-----------ccCCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 100 00111111111111110 1111 1112234677788888889999999999999999999999999
Q ss_pred HHHHHhheecccCCCCCC---CCCcCh-hHHHHH----HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHH---
Q 007913 247 VFVIIVGFVHGKTTNLDP---FLPYGT-EGVFEA----AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMI--- 315 (585)
Q Consensus 247 ~~~~i~~~~~~~~~~~~~---~~~~g~-~~~~~~----~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~--- 315 (585)
+++++.++.+...+...+ +..+.+ .|+..| =..+...|...-..+--....||+ |+..|.+..+-++.
T Consensus 156 ~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~l 234 (427)
T PF05525_consen 156 AILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGIL 234 (427)
T ss_pred HHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHH
Confidence 999988887643221111 111111 122211 122223333332222223334443 44455554444444
Q ss_pred -HHHHHHHHHHHHhcccc--cccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchh
Q 007913 316 -TAVYCLMALALTMMVKY--TEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPW 392 (585)
Q Consensus 316 -~~~y~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~ 392 (585)
.++|......-....+. ++.+..+-+..+.++..|+.+..++.+...++++++..+-..+.+....
T Consensus 235 L~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~----------- 303 (427)
T PF05525_consen 235 LALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFS----------- 303 (427)
T ss_pred HHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34444444332222111 1122234566777777889999999999999999999998888887655
Q ss_pred hhccCCCCCchHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007913 393 FALVHPKTQTPINAT-LLVTTLSAIIALFSSLNILSSVFSFSTLSIFM 439 (585)
Q Consensus 393 ~~~~~~~~~~P~~ai-~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 439 (585)
+..| +.+++.. ++.++++.++..++ ++.++++..-...+.|=
T Consensus 304 --~~~~--kisY~~~v~i~~i~S~~ian~G-l~~Ii~~s~PiL~~iYP 346 (427)
T PF05525_consen 304 --ELFP--KISYKVWVIIFTIFSFIIANLG-LDQIIKISVPILMFIYP 346 (427)
T ss_pred --HHhc--ccChHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHhH
Confidence 3333 3333322 23345555555553 67777766654444443
|
They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane |
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0067 Score=64.77 Aligned_cols=284 Identities=10% Similarity=0.003 Sum_probs=148.8
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhH-HHHH---HHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAI-VLSY---LASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
.|+++++....-.+++.+|.+.+......... .|... .+.+ ..+.++....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899998888877777776665544433333 34321 1111 111111111233344444444 345789999999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhh
Q 007913 152 LGDF-VAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRR 230 (585)
Q Consensus 152 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~ 230 (585)
||++ ...+.+....+...........+.+..++..++ .+.. ..+.+..++.......-|.|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~~~----------------~~iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LSYL----------------TALFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHH----------------HHHHHHHHHHHHHHHhhhHHH
Confidence 9954 456666555555555555666666777777666 2210 112222233444555568888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhheecc-cC------------CCCCCCCCcChh--HHHHHH-HHHHHHhhcHhHHhhhh
Q 007913 231 SSWLNWISSIVSSCVIVFVIIVGFVHG-KT------------TNLDPFLPYGTE--GVFEAA-AVVYWSYTGFDMVATMA 294 (585)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~------------~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~e~~~~~~ 294 (585)
..+.+.+-..+.++..+++.+..+... +. +.+.++.++++. .+.... ....+...+.....+-.
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~ 259 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRC 259 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHH
Confidence 888777766666554444433332221 11 111122222211 111111 11122223333334455
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-Hh-cccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALAL-TM-MVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVG 372 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (585)
-..||+ |+..|+...+..+...++....+.- .. ...++..+++..++....+..+++...++.++.+.+.+++..+.
T Consensus 260 ~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~ 338 (471)
T TIGR02119 260 MSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSL 338 (471)
T ss_pred HhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Confidence 566775 6788888888766555544433321 11 11112223455566666666778888888888888888887777
Q ss_pred hhhhhHH
Q 007913 373 SLGQARY 379 (585)
Q Consensus 373 ~~~~sR~ 379 (585)
+.+.+-.
T Consensus 339 l~~~ss~ 345 (471)
T TIGR02119 339 LLQSSST 345 (471)
T ss_pred HHHHHHH
Confidence 7766654
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0071 Score=64.77 Aligned_cols=283 Identities=12% Similarity=0.080 Sum_probs=135.3
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhcc----CCCchhHhHHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIP----VAGGSFSFLRV 150 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P----~~Gg~y~~~~~ 150 (585)
.|+++++-...-..++.++...+. .++.... .|....+..+...+..+...+.+++--+++. ..-..++|.++
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~--~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV--TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 478888876655555555444333 4444432 4543222221111222333344444333222 23357999999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 151 ELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 151 ~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
.||+ ....+.+....+......+....+.+..++..++ .+.. ..+.+...+.......-|
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~~~----------------~~iii~~~i~~~Yt~~GG 175 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LDYK----------------TGLLIGALIIVIYTFFGG 175 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHH----------------HHHHHHHHHHHHHHHhhh
Confidence 9994 4444555444444555556666666777777665 2210 112222334445555567
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhheecc-------------cCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhh
Q 007913 228 TRRSSWLNWISSIVSSCVIVFVIIVGFVHG-------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA 294 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~ 294 (585)
.|...+.+.+-.++.++..+++.+..+.+. +++..+.+.+..+.++...+.. ...+.|.....+-.
T Consensus 176 l~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR~ 254 (487)
T TIGR02121 176 FLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVRF 254 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHHH
Confidence 787777666655555544333332222111 1111111112222222221111 11222322222222
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-HH--hcccc-cc---cccccHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Q 007913 295 EETKKPSRDIPIGLVGSMCMITAVYCLMALA-LT--MMVKY-TE---IDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTT 367 (585)
Q Consensus 295 ~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~-~~--~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (585)
=-.||+ |+..|+...+........+...+. +. ...+. .+ .+++..+....++..+++..-++..+.+.+.++
T Consensus 255 ~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mS 333 (487)
T TIGR02121 255 MAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMS 333 (487)
T ss_pred HhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 334564 577788776654332222111111 11 11111 11 123445566666667788878888888888888
Q ss_pred HHHHhhhhhhHH
Q 007913 368 SLLVGSLGQARY 379 (585)
Q Consensus 368 ~~~~~~~~~sR~ 379 (585)
+..+.+.+.+-.
T Consensus 334 T~~s~l~s~ss~ 345 (487)
T TIGR02121 334 TISSQLLVSSSA 345 (487)
T ss_pred HHHHHHHHHHHH
Confidence 888887777665
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >PRK00701 manganese transport protein MntH; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0049 Score=64.54 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhcc-CCC-chhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 121 GLSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188 (585)
Q Consensus 121 ~~~~~~~a~~~~el~s~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~ 188 (585)
-+++.+....+-|++.|.- ..| |..+-+++.+||.+++.......++..........+.+.-++.+++
T Consensus 71 llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g 140 (439)
T PRK00701 71 ILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG 140 (439)
T ss_pred HHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444455666777777776 344 7888889999999888776555556555555555555555555444
|
|
| >PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0034 Score=64.39 Aligned_cols=244 Identities=15% Similarity=0.137 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHhhhhccC--CCchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcc
Q 007913 122 LSALLSAFCYTEFAVEIPV--AGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKV 199 (585)
Q Consensus 122 ~~~~~~a~~~~el~s~~P~--~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (585)
+++.+..+.+-|++.|+-. .-+..+-.++.+||.+++.......+...........+.+.-++.+++ .+.
T Consensus 20 ll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-~~~------- 91 (358)
T PF01566_consen 20 LLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-IPL------- 91 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCc-------
Confidence 3445556666777777662 236667778899999999888777777777766666666666665553 221
Q ss_pred cccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhe-ecccCCC-CCCC----CCcChhHH
Q 007913 200 DCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF-VHGKTTN-LDPF----LPYGTEGV 273 (585)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~----~~~g~~~~ 273 (585)
.....+..+....+.+...+...++++++..+..+..+.+++..+ .+.+... ..++ .|. ..++
T Consensus 92 ----------~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~-~~~~ 160 (358)
T PF01566_consen 92 ----------WIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG-PGSL 160 (358)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc-hhHH
Confidence 122223333333333322344556666665555554333333322 2222221 1122 222 1222
Q ss_pred HHHHHHHHHHhhcHhHHhhhh---hhhcCCC---CC-hhhHHHHHHHHHHHHHHHHHHHH----Hhcc-cc-cccccccH
Q 007913 274 FEAAAVVYWSYTGFDMVATMA---EETKKPS---RD-IPIGLVGSMCMITAVYCLMALAL----TMMV-KY-TEIDMNAA 340 (585)
Q Consensus 274 ~~~~~~~~~~~~G~e~~~~~~---~E~k~p~---r~-~p~ai~~~~~~~~~~y~l~~~~~----~~~~-~~-~~~~~~~~ 340 (585)
...+...-.....++...|-+ |+-.+.+ ++ --|....=..+..++..+.+.++ .... +. .+..+.+.
T Consensus 161 ~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~ 240 (358)
T PF01566_consen 161 LFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQ 240 (358)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 222222222222333222222 1111111 11 01222222222222222222221 1111 11 12233345
Q ss_pred HHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007913 341 YSIAFRQIGM-NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIA 384 (585)
Q Consensus 341 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a 384 (585)
..+.++..-+ ++...++.++.+.+.+++......+.++.+.+.-
T Consensus 241 ~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 241 AAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 6677776666 7999999999999999999999888888776544
|
The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane |
| >PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0089 Score=61.58 Aligned_cols=310 Identities=10% Similarity=0.068 Sum_probs=156.5
Q ss_pred ccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHH
Q 007913 91 SVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLE 167 (585)
Q Consensus 91 ~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~ 167 (585)
.-.|+|-...|...-.. +|.. +.+++++.++..=..+..- .-++||.+.=..+..||..|.+......+
T Consensus 20 mFFGAGNLIFPp~LG~~-aG~~~~~a~~GF~iT~VglPlLgiia------va~~~g~~~~l~~rv~~~f~~~f~~~i~l- 91 (439)
T PRK15433 20 LFVGAGNIIFPPMVGLQ-AGEHVWTAAFGFLITAVGLPVLTVVA------LAKVGGGVDSLSTPIGKVAGVLLATVCYL- 91 (439)
T ss_pred HHhcCcchhccHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHH------HhhcCCCHHHHhhhcchHHHHHHHHHHHH-
Confidence 33689988888877665 7753 5666666665533332221 11233444444556677776655332221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccchhcc-cccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 007913 168 AVVGAAGLARSWSSYLASMIDSNNSDLLRFKV-DCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVI 246 (585)
Q Consensus 168 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~ 246 (585)
...+..+ .+......++... |-.+++.....+..+++..+..++.++.-|...++-++++...++.+
T Consensus 92 --~IGP~~a----------iPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l 159 (439)
T PRK15433 92 --AVGPLFA----------TPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIAL 159 (439)
T ss_pred --HHhhccc----------cCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHH
Confidence 1111100 0100111122111 11221111223567778888888899999999999999999999999
Q ss_pred HHHHHhheecccCCC--C-CCCCCcCh-hHHHHH----HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHH----
Q 007913 247 VFVIIVGFVHGKTTN--L-DPFLPYGT-EGVFEA----AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCM---- 314 (585)
Q Consensus 247 ~~~~i~~~~~~~~~~--~-~~~~~~g~-~~~~~~----~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~---- 314 (585)
+++++.++.+..... . ..+..+.+ .|+..| =..+...|...-.-+--....||+ |++-|.+..+-.+
T Consensus 160 ~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~ 238 (439)
T PRK15433 160 VILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVG 238 (439)
T ss_pred HHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHH
Confidence 888888877532211 1 11111101 111111 112222222222222223335554 3444444443333
Q ss_pred HHHHHHHHHHHHHhccc-cccccccc-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchh
Q 007913 315 ITAVYCLMALALTMMVK-YTEIDMNA-AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPW 392 (585)
Q Consensus 315 ~~~~y~l~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~ 392 (585)
-.++|......-....+ .++.++.. -........-++++..++.+....+++++..+...+.++.+..
T Consensus 239 L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~---------- 308 (439)
T PRK15433 239 LTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ---------- 308 (439)
T ss_pred HHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 34445444443222211 11111222 2233444556689999999999999999999988888876543
Q ss_pred hhccCCCCCchHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007913 393 FALVHPKTQTPIN-ATLLVTTLSAIIALFSSLNILSSVFSFSTLSIF 438 (585)
Q Consensus 393 ~~~~~~~~~~P~~-ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 438 (585)
.- ..|+. ..++.++++.++..++ ++.++++..-...+.|
T Consensus 309 ---~~---~isY~~~v~i~~l~S~~lSn~G-~~~II~~s~PiL~~iY 348 (439)
T PRK15433 309 ---YV---PLSYRTLVFILGGFSMVVSNLG-LSQLIQISVPVLTAIY 348 (439)
T ss_pred ---hc---CCcHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 21 13333 3334444454444443 5666665554433333
|
|
| >PRK10484 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.02 Score=61.86 Aligned_cols=291 Identities=11% Similarity=-0.002 Sum_probs=134.5
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHH-HHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLA-SGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll-~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
.|+++++-..+-..++.+++..+......... .|..... |.. ..+...+.++.++.--.+. ..=..++|.++.||+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~-~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMA-WEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDK 113 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCc
Confidence 58899988776666666665555433333223 4544221 222 2233333444444433333 233678999999998
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHH--HHHHHHHHHhhhhhhh
Q 007913 155 FVAYIAAGNILLEAVVG-AAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVL--ILLVCNGIAMSGTRRS 231 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~g~~~~ 231 (585)
......+....+.+... .+......+..+...+. ... .+ +. +......+... .++.......-|.|..
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~-~~~-~~-----gi--~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV 184 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFH-VSE-LL-----GI--SYGAAIWLLVWLIGIIGAIYAVFGGLKAV 184 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chh-hc-----CC--cHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 76666655555444433 22222223333333221 000 00 00 00000011111 1222344445688877
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecc---------------cCCCCCCCCC----cChhHHHHHHHHHHHHhhc-HhHHh
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHG---------------KTTNLDPFLP----YGTEGVFEAAAVVYWSYTG-FDMVA 291 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~---------------~~~~~~~~~~----~g~~~~~~~~~~~~~~~~G-~e~~~ 291 (585)
.+.+.+-.++.++..+++.+..+... +++.++.+.+ ..+..++.+.......+.+ -....
T Consensus 185 ~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 264 (523)
T PRK10484 185 AVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIV 264 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHH
Confidence 77666665555444332222211110 1111111111 1222233332222122222 11222
Q ss_pred hhhhhhcCCCCChhhHHHHHHHHHHHHHHHHH---HHHHhcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Q 007913 292 TMAEETKKPSRDIPIGLVGSMCMITAVYCLMA---LALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTS 368 (585)
Q Consensus 292 ~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (585)
+-.=-.||+ |+..|+...+.....+.++... +......|++..+++..++....+..+++..-++..+.+.+.+++
T Consensus 265 qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST 343 (523)
T PRK10484 265 QRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILST 343 (523)
T ss_pred HHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHH
Confidence 333335664 6677887776555444333322 222222333222345566666667777887777777878888888
Q ss_pred HHHhhhhhhHH
Q 007913 369 LLVGSLGQARY 379 (585)
Q Consensus 369 ~~~~~~~~sR~ 379 (585)
..+.+.+.|-.
T Consensus 344 ~~s~l~s~st~ 354 (523)
T PRK10484 344 FNGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHHH
Confidence 77777777655
|
|
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00026 Score=74.04 Aligned_cols=289 Identities=16% Similarity=0.118 Sum_probs=134.4
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
.|+++++-...-.+++.+|.+.+......... .|....+..+...+...+.++.++.--++. +.-...+|.++.||+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 47889887777777777766555443333333 455433333333333344444444433333 3447899999999998
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 156 V--AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 156 ~--g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
. ..+.+....+..+...+....+.+..++..++ .+.. ....+...+.......-|.|...+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~~~----------------~~~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IPYN----------------TAILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---HH----------------HHHHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc-hhhh----------------HHHHHHHHHHHHhhhhhhHhhhhH
Confidence 8 66655556666667777777888888887776 2210 111122222333344457777776
Q ss_pred HHHHHHHHHHHHHHHHHHhheec-------------ccCCCCCCCCCcCh---hHHHHHHHHHHHHhhcHhHHhhhhhh-
Q 007913 234 LNWISSIVSSCVIVFVIIVGFVH-------------GKTTNLDPFLPYGT---EGVFEAAAVVYWSYTGFDMVATMAEE- 296 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~~i~~~~~-------------~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~G~e~~~~~~~E- 296 (585)
.+.+-.++.++..+++.+..+.. .+++..+.+.|.+. .+........+....|.....++...
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 225 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRF 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHH
Confidence 66555555544433333322211 01100111112221 00000000000111233333433333
Q ss_pred --hcCCCCChhhHHHHHHHHHHHHHHHH------HHHHHhccc----ccccccccHHHHHHHHhCcHHHHHHHHHHHHHH
Q 007913 297 --TKKPSRDIPIGLVGSMCMITAVYCLM------ALALTMMVK----YTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKG 364 (585)
Q Consensus 297 --~k~p~r~~p~ai~~~~~~~~~~y~l~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (585)
.||+ |+..|++..+.....+++... ........| .++.+++..+.....+..+++..-++.++.+.+
T Consensus 226 ~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA 304 (406)
T PF00474_consen 226 LAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAA 304 (406)
T ss_dssp HSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHH
T ss_pred HhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHh
Confidence 3554 567787776654443333331 111222222 112233446677777777788888888888888
Q ss_pred HHHHHHHhhhhhhHHHHHHHhcC
Q 007913 365 MTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 365 ~~~~~~~~~~~~sR~l~~~ardg 387 (585)
..++..+.+.+.+-. ++||=
T Consensus 305 ~~ST~~s~l~a~ss~---~~~Di 324 (406)
T PF00474_consen 305 IMSTADSLLLAISSI---FSRDI 324 (406)
T ss_dssp HHHHHHHHHHHHHHH---HHHHC
T ss_pred hhHHHHHHHhhhhhh---hhHHh
Confidence 888888887777765 45663
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.018 Score=59.19 Aligned_cols=74 Identities=15% Similarity=0.057 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcc-CCC-chhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007913 115 LSYLASGLSALLSAFCYTEFAVEIP-VAG-GSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID 188 (585)
Q Consensus 115 ~~~ll~~~~~~~~a~~~~el~s~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~ 188 (585)
+.++..-+++.+.++..-|++.+.- .+| |.-.-+++.++|.+++..-....++.+...-.+..+.+..++.+++
T Consensus 48 y~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 48 YSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344445556667777777777776 344 4677788889999888876666666666666666666666666664
|
|
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.029 Score=60.93 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=89.7
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHH-HHHHHHHhhhhccCCCchhHhHHHHhc-
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG- 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~-~a~~~~el~s~~P~~Gg~y~~~~~~~g- 153 (585)
.|++++|.......++.+++..|......... .|...++ +.++..+..+ ..+.+++--++... -..++|.++.||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 58899999887777777766555543333333 4543322 2233333332 23444544444332 367888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|....+.+....+..+........+.+..++..++ .+.. ..+.+..++...+...-|.|...+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~~~----------------~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-ISYL----------------YAVVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHH----------------HHHHHHHHHHHHHHhccchhHHHH
Confidence 56888888777777777777777777777777765 2210 012222223333444568888877
Q ss_pred HHHHHHHHHHHHHHHH
Q 007913 234 LNWISSIVSSCVIVFV 249 (585)
Q Consensus 234 ~~~~~~~~~~~~~~~~ 249 (585)
.+.+-.++.++..+++
T Consensus 206 td~iQ~~im~~~~i~~ 221 (549)
T PRK12488 206 VQIIKAVLLLSGTSFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666665544433
|
|
| >KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0021 Score=66.29 Aligned_cols=250 Identities=18% Similarity=0.134 Sum_probs=133.1
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
+++-+.+..+.-...++.|+|++..|... .. .|-. .++...+.+++.....+.+.+.++..++. ....-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-KT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-HH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 45567788888888899999999888755 34 6654 66677778888888889999998888866 444455566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHH
Q 007913 155 FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWL 234 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~ 234 (585)
..........-. +..++.++.....+.+.........+++... ..........+....++..+++.+ ..... +.
T Consensus 80 ~g~~~~~v~~~~-~~~g~i~yliiigd~~p~~~~~~~~~~~~~~--~~~~~~~~ill~~~~~i~pLsl~k--~l~~L-k~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKC-FGVGMVSYLIIIGDLLPGFIRSLFLDEEGGS--HYLDRNFLILLVLLFIILPLSLLK--NLDSL-KY 153 (411)
T ss_pred CceeeehhhHHh-hhccceEEEEEEccccchhhhhccccccccc--ccccceeEeehHHHHHHHHHHHHH--hhhhH-HH
Confidence 542211111000 0000000000011111111110000000000 000000001122222222233322 11111 12
Q ss_pred HHHHHHHHHHHHHHHHHhheecccC--CCCCCCCCcCh--hHHHHHHHHHHHHhhcHhHHhhhhhhhcCCC-CChhhHHH
Q 007913 235 NWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFLPYGT--EGVFEAAAVVYWSYTGFDMVATMAEETKKPS-RDIPIGLV 309 (585)
Q Consensus 235 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-r~~p~ai~ 309 (585)
...++...+..++.+++......+. .......+++. .+++.+++...++|.........-.|+|||+ |++-+...
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 2222222222222222222222111 11112222232 5788999999999999999999999999996 67889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccc
Q 007913 310 GSMCMITAVYCLMALALTMMVKYTE 334 (585)
Q Consensus 310 ~~~~~~~~~y~l~~~~~~~~~~~~~ 334 (585)
.+...+..+|......-....+++.
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheecccc
Confidence 9999999999999888776666543
|
|
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.03 Score=60.22 Aligned_cols=282 Identities=10% Similarity=-0.005 Sum_probs=129.7
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHH-Hhh---hhccCCCchhHhHH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYT-EFA---VEIPVAGGSFSFLR 149 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~-el~---s~~P~~Gg~y~~~~ 149 (585)
.|++++|-...-..++.++...+. .++... . .|....+. .++..+. ......++ .+- .+....-..++|.+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y-~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVF-L-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHH-H-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 588999888776666666655554 344433 3 55543222 1222222 11111111 111 11233446889999
Q ss_pred HHhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhh
Q 007913 150 VELGD---FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMS 226 (585)
Q Consensus 150 ~~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 226 (585)
+.||+ ....+.+....+......+....+.+..++..++ .+. ...+.+...+.......-
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i~~----------------~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-MSY----------------ETALWAGAAATILYTFIG 178 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH----------------HHHHHHHHHHHHHHHHhh
Confidence 99984 4555555555555555556666666677776665 211 012222233344445556
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhheec-c------------cCCCCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhh
Q 007913 227 GTRRSSWLNWISSIVSSCVIVFVIIVGFVH-G------------KTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATM 293 (585)
Q Consensus 227 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~ 293 (585)
|.|...+.+.+-.++.++..+++.+..+.. + +..+.+...+.++..+. +.......+.|.....+-
T Consensus 179 Gl~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~p~~~qR 257 (502)
T PRK15419 179 GFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAII-SLMGWGLGYFGQPHILAR 257 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHH-HHHHHHHHHcCChHHHHh
Confidence 788777766666555544433322222111 1 01111111111122222 111112223333222222
Q ss_pred hhhhcCCCCChhhHHHHH----HHHHHHHHHHHHHHHHh--ccccc----ccccccHHHHHHHHhCcHHHHHHHHHHHHH
Q 007913 294 AEETKKPSRDIPIGLVGS----MCMITAVYCLMALALTM--MVKYT----EIDMNAAYSIAFRQIGMNWAKYLVSVCALK 363 (585)
Q Consensus 294 ~~E~k~p~r~~p~ai~~~----~~~~~~~y~l~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (585)
.--.||+ |++.++...+ ........++....... ..|.. ..+++..+.....+..++++.-++..+.+.
T Consensus 258 ~~aak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilA 336 (502)
T PRK15419 258 FMAADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILA 336 (502)
T ss_pred heecCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 2223554 2233332221 11111111111111111 11210 012344566666666778888888888888
Q ss_pred HHHHHHHHhhhhhhHH
Q 007913 364 GMTTSLLVGSLGQARY 379 (585)
Q Consensus 364 ~~~~~~~~~~~~~sR~ 379 (585)
+.+++..+.+.+.|-.
T Consensus 337 A~mST~~s~l~a~ss~ 352 (502)
T PRK15419 337 AVMSTLSCQLLVCSSA 352 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888777654
|
|
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00045 Score=73.14 Aligned_cols=171 Identities=15% Similarity=0.120 Sum_probs=89.2
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCC-chhHhHHHHh
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAG-GSFSFLRVEL 152 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~G-g~y~~~~~~~ 152 (585)
.+|+-++++.+.+=++..+....+..-.......-+.. ++++.+++.++........+.++ |+.| ......|..|
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G---~r~Gl~~~v~sR~~F 81 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG---PRTGLPTMVLSRASF 81 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH---HCC---HHHHTTTTS
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc---cccCCCchhcchhcc
Confidence 36778889988886665554444432222211111222 66666666666555544445554 4444 3566667789
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhccc-ccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVD-CFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
|.+.+.+......+..+.-.+......++.+....+...+. +.. .+ ..........+..+++.++.......|.|..
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-FLW-IGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HH-----------HHHHHHHHHHHHHHCTHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-chh-hhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99888888888777777777777777788888777621110 000 00 0000000111222333445566677888888
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 007913 232 SWLNWISSIVSSCVIVFVI 250 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~ 250 (585)
.+++.+...+.....+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~ 178 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGML 178 (440)
T ss_dssp HHHHHCCHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhhhhee
Confidence 8888877765544433333
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >PRK09395 actP acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.054 Score=58.95 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=82.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHH-HHHHHHHhhhhccCCCchhHhHHHHhc-
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALL-SAFCYTEFAVEIPVAGGSFSFLRVELG- 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~-~a~~~~el~s~~P~~Gg~y~~~~~~~g- 153 (585)
.|++++|.......++.++...|......... .|...++ +.++..+..+ ..+.+++--++.. .-..++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 47899887666666666665544433333223 4544322 2222322222 2333333222222 2356778889998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhH
Q 007913 154 DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSW 233 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~ 233 (585)
|....+.+....+..+........+.+..++..++ .+. ...+.+..++.......-|.|...+
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i~~----------------~~~ili~~~i~~iYt~~GGm~av~~ 207 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-LNY----------------HVAVVLVGVLMMVYVLFGGMLATTW 207 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH----------------HHHHHHHHHHHHHHHhhcchHHHHH
Confidence 56788887777766666666767777777777665 221 0122222233444445568888777
Q ss_pred HHHHHHHHHHHHH
Q 007913 234 LNWISSIVSSCVI 246 (585)
Q Consensus 234 ~~~~~~~~~~~~~ 246 (585)
.+.+-.++.++..
T Consensus 208 TD~iQ~iim~~g~ 220 (551)
T PRK09395 208 VQIIKAVLLLSGA 220 (551)
T ss_pred HHHHHHHHHHHHH
Confidence 7666655555443
|
|
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.058 Score=58.60 Aligned_cols=152 Identities=12% Similarity=0.071 Sum_probs=82.1
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChhHHHHHHHHHHHHH-HHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPAIVLSYLASGLSAL-LSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ll~~~~~~-~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
.|++++|....-..++.++..-|. .++... . .|...++.. ++..+.. ...+.+++--++.-. -...+|.++.||
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y-~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~ 141 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVY-T-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLK 141 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcC
Confidence 578888866554455545443333 344333 2 454322211 2333332 334455554444432 356778888887
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 154 -DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 154 -~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
|....+.+....+..+........+.+..++..++ .+. ...+.+..++.......-|.|...
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g-i~~----------------~~~iii~~~i~~~Yt~~GGm~av~ 204 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG-LNY----------------HVAVVLVGILMVMYVLFGGMLATT 204 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH----------------HHHHHHHHHHHHHHHHhhhhHHHH
Confidence 55677777666666666666666777777777666 211 011222223334444556888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 007913 233 WLNWISSIVSSCVIVF 248 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~ 248 (585)
+.+.+-.++.++..++
T Consensus 205 ~td~iQ~~im~~g~i~ 220 (549)
T TIGR02711 205 WVQIIKAVLLLFGATF 220 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666665554433
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.064 Score=58.44 Aligned_cols=148 Identities=10% Similarity=0.054 Sum_probs=86.4
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhH-H--HHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHh
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAI-V--LSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~-~--~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 152 (585)
.|++++|-...-..++.+++..+......... .|... + +++.++ ....++.+++.-++... -..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 58899998777777766665544433322222 45432 1 222222 23345666666666653 47899999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhh
Q 007913 153 G-DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRS 231 (585)
Q Consensus 153 g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~ 231 (585)
| |....+.+....+..+...+....+.+..++...+ .+.. ..+.+..++.......-|.|..
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-i~~~----------------~~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-VDFE----------------TGVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHH----------------HHHHHHHHHHHHHHHhhhHHHH
Confidence 8 44677777777777777777777777777777766 2210 1121222333444445688877
Q ss_pred hHHHHHHHHHHHHH
Q 007913 232 SWLNWISSIVSSCV 245 (585)
Q Consensus 232 ~~~~~~~~~~~~~~ 245 (585)
.+.+.+-.++.++.
T Consensus 169 ~~TD~iQ~iim~ig 182 (552)
T TIGR03648 169 TWTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 77665555544443
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.077 Score=56.76 Aligned_cols=282 Identities=13% Similarity=0.091 Sum_probs=145.4
Q ss_pred ccccChhHHHHHhhccc-cc-ccchhccHHhHhhccChhHHHHHH----HHHHHHHHHHHHHHHhhhhccCCCchhHhHH
Q 007913 76 QKCLTWWDLTWLCFGSV-VG-SGIFVITGQEAKKHAGPAIVLSYL----ASGLSALLSAFCYTEFAVEIPVAGGSFSFLR 149 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~-ig-~gi~~~~~~~~~~~~G~~~~~~~l----l~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~ 149 (585)
.|+++++ ..+++.+.. .+ ...+..++.... .|....+..+ ...+.....+--..+++ +-+..-..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~--~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYA--SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 5889998 666655543 34 555556666543 4554333222 33344444555566666 4555668899999
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 150 VELG-DFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 150 ~~~g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
+.|| +....+.+....+..+...+....+.+..+...++ .+.. ....+...++.......|.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~~----------------~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISYV----------------TGILIGALIVALYTFLGGL 175 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCHH----------------HHHHHHHHHHHHHHHHcCh
Confidence 9999 88999999988999999999999988888866665 2210 1222223333444444566
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheec-c----------cCCC---CCCCC-CcChhHHHH--HH-HHHHHHhhcHhHH
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVH-G----------KTTN---LDPFL-PYGTEGVFE--AA-AVVYWSYTGFDMV 290 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~----------~~~~---~~~~~-~~g~~~~~~--~~-~~~~~~~~G~e~~ 290 (585)
|...+...+=..+..+.+..+.+..... . ..++ ..++. +..+..... .. ......+..-+..
T Consensus 176 ~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (493)
T COG0591 176 RAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHIL 255 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhh
Confidence 6655544444443333332222222111 0 0010 01111 011111111 11 1112223333444
Q ss_pred hhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHH-----HHhcccc-----cccccccHHHHHHHHhCcHHHHHHHHHH
Q 007913 291 ATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALA-----LTMMVKY-----TEIDMNAAYSIAFRQIGMNWAKYLVSVC 360 (585)
Q Consensus 291 ~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (585)
.+.-. .|+++ +.||.......+-.+.+++..++ ....... .+.+.+..+........+++..-++..+
T Consensus 256 ~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~a 333 (493)
T COG0591 256 PRFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAA 333 (493)
T ss_pred hhhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHH
Confidence 44444 55553 33533333333333322222111 1111111 1123445677777777788888777777
Q ss_pred HHHHHHHHHHHhhhhhhHHH
Q 007913 361 ALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 361 ~~~~~~~~~~~~~~~~sR~l 380 (585)
.+.+..++..+.+...+-.+
T Consensus 334 ilaAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 334 ILAAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 77777777766666665543
|
|
| >PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.099 Score=55.21 Aligned_cols=344 Identities=13% Similarity=0.129 Sum_probs=151.5
Q ss_pred cccccChhHHHHHhhcccccccchhcc-----------HHhHhhccC-h-------------hHHHHHHHHHHHHHHHHH
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVIT-----------GQEAKKHAG-P-------------AIVLSYLASGLSALLSAF 129 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~-----------~~~~~~~~G-~-------------~~~~~~ll~~~~~~~~a~ 129 (585)
-|.++|.++.+++.+++-+|.|+..-. +... . .+ + ..+.+|.+-++..+..++
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~-~-p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay 148 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGI-E-PGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAY 148 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT--T-TT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCC-C-CCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhe
Confidence 356799999999999988888875321 1110 0 11 0 023466777777777777
Q ss_pred HHHHhhhhccCCCchhHhHHHHhchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcccCCccchhcccccCCC
Q 007913 130 CYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVV----GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADG 205 (585)
Q Consensus 130 ~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (585)
.+..-.....-+...|....+...+..|.+.=....++.+. +........+.-++..++ .+++...
T Consensus 149 ~~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~G-i~~~~~~--------- 218 (485)
T PF02028_consen 149 FFYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFG-IPNTFGL--------- 218 (485)
T ss_dssp HHHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SSSTHHH---------
T ss_pred eeeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcC-CCCchHH---------
Confidence 77663333333444444444333233444443333343333 333334444555555555 3332211
Q ss_pred CCcchHHHHHHHHHHHHHHhhh----hhhhhHHHHHHHHHHHHHHHHHHHhheec--------------cc---C-CCCC
Q 007913 206 FNLLDPVAVLILLVCNGIAMSG----TRRSSWLNWISSIVSSCVIVFVIIVGFVH--------------GK---T-TNLD 263 (585)
Q Consensus 206 ~~~~~~~~~~~~~~~~~i~~~g----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------------~~---~-~~~~ 263 (585)
...+..++.++.+.-...| +|..+++|..+... .++.+.+.+-.. .+ . -+..
T Consensus 219 ---~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~---ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~ 292 (485)
T PF02028_consen 219 ---QIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFA---LLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTD 292 (485)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH---HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred ---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 1233334444444445544 45555555544443 333333222110 00 0 0111
Q ss_pred CCCCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhc--cccc-----cc
Q 007913 264 PFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMM--VKYT-----EI 335 (585)
Q Consensus 264 ~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~--~~~~-----~~ 335 (585)
++.+.+ |.+-+..+..+.|.-.+--....++.=.|. |++.--+...++... +....-..+.+. ...+ +.
T Consensus 293 ~~~~~~~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~ps-l~~~~wf~ifGg~al~~~~~g~~~~ 369 (485)
T PF02028_consen 293 PFGNSGQWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPS-LFCFLWFSIFGGYALYLQLSGAGDL 369 (485)
T ss_dssp TTTTTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTSS-H
T ss_pred cccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhH-HHHHHHHHHHCchHHhhHhhhhhhH
Confidence 333333 544444444444443443444444444443 787544444433333 322222222211 1111 11
Q ss_pred ---cccc---HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHH
Q 007913 336 ---DMNA---AYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLL 409 (585)
Q Consensus 336 ---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~ 409 (585)
..++ .+...+++.. ...++.+..++..+....+..-+.+..+-.++.+| +.+ -..+.+..|-
T Consensus 370 ~~~~~~g~~~a~~~~l~~lP---~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~e--p~~~~ri~W~ 437 (485)
T PF02028_consen 370 AAANEQGPEAALFAFLEQLP---LSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEE--PPRWLRIFWG 437 (485)
T ss_dssp HHHHHH-HHHHHHHHHHTST---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSS--S-HHHHHHHH
T ss_pred HHHhhcchhhHHHHHHHHhh---HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCC--CchHHHHHHH
Confidence 0111 2223333332 23344444444555555556666777777777665 112 2233333332
Q ss_pred H--HHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007913 410 V--TTLSAIIALFSS---LNILSSVFSFSTLSIFMLMAIALLVRRYY 451 (585)
Q Consensus 410 ~--~~i~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~r~~ 451 (585)
. ++++..+...+. .+.+..+.++...+...+.+.+.++.-|+
T Consensus 438 ~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~ 484 (485)
T PF02028_consen 438 LIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKE 484 (485)
T ss_dssp HHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 233334444444 44455555556666666666676654443
|
The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B. |
| >PLN00151 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.043 Score=60.08 Aligned_cols=221 Identities=12% Similarity=0.071 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhe---ecccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF---VHGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+ .+.++.-+..+.|. +..+ +..
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~---~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~ 349 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGF---AFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSA 349 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEE
Confidence 3467788888888888888766554 455544444444444444 34444333344442 1111 122
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|.|+.-.=-+.. .+|.+.+|-..-+.=+.++--+-.-++...-| + +..+|+.. ...+++.+-
T Consensus 350 LGgVvLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~--~~~npFy~----svP~~~~wP 420 (852)
T PLN00151 350 LGGCVLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-D--SAEQIFFS----SVPSSLFWP 420 (852)
T ss_pred ecceeeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHH----hCCchhHHH
Confidence 344557778888763321221 23445444332222222221111122221111 1 12334432 233444443
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCC-C---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKT-Q---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++. | .|..-.++.....++...+.+-+.+.+..+
T Consensus 421 ~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 421 VFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 33333333333333333333344445556789994 334444332 2 465544444333333444456677777777
Q ss_pred HHHHHHHHHHH
Q 007913 432 FSTLSIFMLMA 442 (585)
Q Consensus 432 ~~~~~~~~~~~ 442 (585)
++......+..
T Consensus 501 iAV~~vM~iTT 511 (852)
T PLN00151 501 IAEVGVMMVST 511 (852)
T ss_pred hhhhhhhhHHH
Confidence 77665555543
|
|
| >PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.18 Score=53.29 Aligned_cols=229 Identities=17% Similarity=0.154 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc--CCCCCCCCC---------cChhHHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--TTNLDPFLP---------YGTEGVFEAA 277 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~---------~g~~~~~~~~ 277 (585)
+..+++++++.+..+.-+|....+++ +..+.++=++.+.+.|+...- ++-+..++| ++..+ +..+
T Consensus 132 Vv~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~~-~~~L 207 (534)
T PF02705_consen 132 VVPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWIG-FFVL 207 (534)
T ss_pred ehhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCch-hhhc
Confidence 34677788888888888887666554 555555555555555544321 221222222 22222 2345
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCC-CCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKP-SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p-~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
...+.+.+|-|+.-. ++-+= +|++.++-..-+.-+.++.-+-.-+....-| + ..++|+... ..+|..+-
T Consensus 208 G~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p-~--~~~npFf~~----~P~~~~~p 277 (534)
T PF02705_consen 208 GAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHP-E--AVSNPFFLL----IPEWLLWP 277 (534)
T ss_pred chHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCc-c--hhhhHHHHH----hHHHHHHH
Confidence 566788899998753 33332 3455444332122211111111111111111 1 123455433 33455554
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCC-C---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKT-Q---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+..+.+.++=-+....-+-|.+|+ ...|.+++. | .|..-.++......+...+.+-+.+.+..+
T Consensus 278 ~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYG 357 (534)
T PF02705_consen 278 MVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYG 357 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHH
Confidence 44444444444444444445555666678899994 344444333 2 465544444443334444556678888888
Q ss_pred HHHHHHHHHHHHH-HHHHHhc
Q 007913 432 FSTLSIFMLMAIA-LLVRRYY 451 (585)
Q Consensus 432 ~~~~~~~~~~~~~-~l~~r~~ 451 (585)
++......+..+- .++.|++
T Consensus 358 iAVt~tM~iTT~L~~~v~~~~ 378 (534)
T PF02705_consen 358 IAVTGTMLITTILLFLVMRRV 378 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 8877777665543 3344443
|
; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane |
| >COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.27 Score=49.79 Aligned_cols=314 Identities=14% Similarity=0.179 Sum_probs=159.6
Q ss_pred HHhhcccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchhHHHHHHH
Q 007913 86 WLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDFVAYIAAG 162 (585)
Q Consensus 86 ~i~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~~g~~~g~ 162 (585)
++.++.-.|+|-...|...-.. +|.. +.+++++.++..=..+..- .-.+||.+.=..+..||+.|.+..-
T Consensus 12 fmLFalFFGAGNlIFPP~LG~~-aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~f~~ 84 (431)
T COG1114 12 FMLFALFFGAGNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHhcCCCccCChhhhhh-cCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHHHHH
Confidence 3344444688887777765444 7753 6667777766543333222 2234565665666778877766543
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHhhcccCCccchhcc-cccCC-CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 007913 163 NILLEAVVGAAGL--ARSWSSYLASMIDSNNSDLLRFKV-DCFAD-GFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWIS 238 (585)
Q Consensus 163 ~~~l~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~ 238 (585)
...+. ..+.. .+..+ ..++... |...+ +.....+..+++..+..++.+...|...|+.+++
T Consensus 85 ~iyLs---IGPffAiPRt~~------------vsfe~~i~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~L 149 (431)
T COG1114 85 AIYLS---IGPFFAIPRTGA------------VSFEVGISPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFL 149 (431)
T ss_pred HHHHH---hcccccCCcccc------------hhHHHhhhcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 22221 11110 00000 0111110 11111 1222346777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHhheecccCCCC--------CCCCCcCh-hHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHH
Q 007913 239 SIVSSCVIVFVIIVGFVHGKTTNL--------DPFLPYGT-EGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLV 309 (585)
Q Consensus 239 ~~~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~g~-~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~ 309 (585)
+.++++.++++.+..+.+.+..-. +++.. |+ .|..+.=..+..+|...-.-+--..-.+++ |+..|-.+
T Consensus 150 TPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~-GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~ 227 (431)
T COG1114 150 TPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSK-GFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTI 227 (431)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHH-HHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHH
Confidence 999999988888876654332111 11111 11 122222223334444432222222333333 34445544
Q ss_pred HHHHHHHHHHHHHHHHH--Hhcccccccc---cc-cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007913 310 GSMCMITAVYCLMALAL--TMMVKYTEID---MN-AAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQI 383 (585)
Q Consensus 310 ~~~~~~~~~y~l~~~~~--~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ 383 (585)
.+-.+..+.-.+.-..+ .+....+... +. .-+....+...|+.+..++.+...++++++..+...+.+..
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aef---- 303 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEF---- 303 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 44444433322222222 2222222111 11 12334445666788888888888889888888877776654
Q ss_pred HhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007913 384 ARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIF 438 (585)
Q Consensus 384 ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 438 (585)
|+|.-||-.-..++++ ..+++.++.-. .++.+..+..-.-...|
T Consensus 304 ---------F~~~~p~~SY~~~v~i-f~i~sflvan~-GL~~Ii~isvPvL~~iY 347 (431)
T COG1114 304 ---------FSKLVPKLSYKTWVII-FTLISFLVANL-GLEQIIKISVPVLTAIY 347 (431)
T ss_pred ---------HHHhcccccHHHHHHH-HHHHHHHHHHh-hHHHHHHHHHHHHHHHh
Confidence 4455544444444443 33344444433 35666665554333444
|
|
| >COG4147 DhlC Predicted symporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=1 Score=46.49 Aligned_cols=270 Identities=10% Similarity=0.080 Sum_probs=139.8
Q ss_pred HHHHHHHhhhhccCCCchhHhHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCC
Q 007913 127 SAFCYTEFAVEIPVAGGSFSFLR-VELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADG 205 (585)
Q Consensus 127 ~a~~~~el~s~~P~~Gg~y~~~~-~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (585)
..+..+|--+++-+- ..-++.. |.-.+...++.+....+...+.......+.+..+..+++ .+.
T Consensus 90 ~~fL~A~~LRk~Gky-T~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-v~~------------- 154 (529)
T COG4147 90 LLFLIAEYLRKLGKY-TFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-VPY------------- 154 (529)
T ss_pred HHHHHHHHHHhcCCc-chHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-CCc-------------
Confidence 566777776666543 3444444 444567777777777777777777777788888887776 211
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc--CC-------------CCCCCCCcCh
Q 007913 206 FNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK--TT-------------NLDPFLPYGT 270 (585)
Q Consensus 206 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-------------~~~~~~~~g~ 270 (585)
...+.++.++......+-|+|...+.|.+=.++.+...++..+....+.+ +. +.+...+.|.
T Consensus 155 ---~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl 231 (529)
T COG4147 155 ---HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGL 231 (529)
T ss_pred ---eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCC
Confidence 11334444555566666788888888876666555544443333222211 10 0000111111
Q ss_pred --hHHHHHHHHHHHHhhcHhHHhhhhhh---hcCCCCChhhHHHHHHHHHHHHHHHHHHHHH----hcc--ccc------
Q 007913 271 --EGVFEAAAVVYWSYTGFDMVATMAEE---TKKPSRDIPIGLVGSMCMITAVYCLMALALT----MMV--KYT------ 333 (585)
Q Consensus 271 --~~~~~~~~~~~~~~~G~e~~~~~~~E---~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~----~~~--~~~------ 333 (585)
...+..+...+--..|.-..+|.--. +++ .|+..|+..++......+|+..-..-. .+. |..
T Consensus 232 ~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~ 310 (529)
T COG4147 232 LYKDPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPIIGAGARLLVGTNPVGKPAWAA 310 (529)
T ss_pred cccCHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhh
Confidence 22333344444444666666665422 122 255667788888899999988655421 111 111
Q ss_pred ------cccc-------ccHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHhcCCCchhhhc
Q 007913 334 ------EIDM-------NAAYSIAFRQIG-MNWAKYLVSVCALKGMTTSLLVGSLGQ----ARYTTQIARAHMIPPWFAL 395 (585)
Q Consensus 334 ------~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----sR~l~~~ardg~lP~~~~~ 395 (585)
|... +.....+....+ +++...++..+.+...++..-+..... ||=+|.+--++. .++
T Consensus 311 ~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~vik~~----ase 386 (529)
T COG4147 311 KWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMVIKKG----ATE 386 (529)
T ss_pred cccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHhCCC----CCc
Confidence 1110 112333344555 577766666666665555544444333 344444332221 222
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHH
Q 007913 396 VHPKTQTPINATLLVTTLSAIIALF 420 (585)
Q Consensus 396 ~~~~~~~P~~ai~~~~~i~~~~~~~ 420 (585)
.. +-..-..+..+..+++..+...
T Consensus 387 ~~-~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 387 KK-EVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred cc-eehhHHHHHHHHHHHHHHheec
Confidence 11 2333334555555555555444
|
|
| >KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.015 Score=56.40 Aligned_cols=230 Identities=11% Similarity=0.081 Sum_probs=127.3
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCc-------hhHhH
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGG-------SFSFL 148 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg-------~y~~~ 148 (585)
+.+++.|+.-.-.-..+-|.=+..+|-.+ ..+|-.++.+.+..+.++..+.-.+.|--= -|...| .|.-+
T Consensus 114 ~~kI~a~qAaWNVTNAIQGMFivgLP~Av--lhGGyw~i~amvg~A~vCcyTGk~Li~CLY-E~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQGMFIVGLPIAV--LHGGYWSIGAMVGVAYVCCYTGKLLIECLY-ENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCccHHHHHhhhhhhhhheeeEeccceee--eEcchhHHHHHHhhhhhhhccchhhhhhhc-cCCCCCcEEEeehhHHHH
Confidence 45688888765555444454444445444 337776666666666555444433322110 011122 34444
Q ss_pred HHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cCCccchhcccccCCCCCcchHHHHHHHHHHHHHH
Q 007913 149 RVE-LGDFVA-YIAAGNILLEAVVGAAGLARSWSSYLASMIDS--NNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIA 224 (585)
Q Consensus 149 ~~~-~g~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (585)
.+. ++|.+| ..+....++..+.++..+....++.+...+++ .+...| ..+..+.++-+.+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sW--------------m~i~~a~LLpc~F-- 254 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASW--------------MMITSASLLPCSF-- 254 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccch--------------hhhhhHHHhhhHH--
Confidence 444 666655 55555666777777778888888888877762 112222 1333444444443
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccCCCCCCC-CCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCC
Q 007913 225 MSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKTTNLDPF-LPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303 (585)
Q Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ 303 (585)
+...|..+++..+.+.-+++.-++++..++.....-.|+-. +.-....+-..+..+.|+|+.--..+++-+.+|||.+
T Consensus 255 Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~- 333 (524)
T KOG4303|consen 255 LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ- 333 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-
Confidence 35778888988888888887777776666654432222200 0000111111223345777777777888889999964
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 007913 304 IPIGLVGSMCMITAVYCLMALA 325 (585)
Q Consensus 304 ~p~ai~~~~~~~~~~y~l~~~~ 325 (585)
+-.-+-++-+...++=.+....
T Consensus 334 Fn~Ml~WsHIAAaVfK~~Fg~~ 355 (524)
T KOG4303|consen 334 FNVMLKWSHIAAAVFKVVFGML 355 (524)
T ss_pred heeeeehHHHHHHHHHHHHHHh
Confidence 4455556666666655554444
|
|
| >TIGR00842 bcct choline/carnitine/betaine transport | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.7 Score=45.46 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=17.5
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|-++|.++.+++.+++-+|.|+.
T Consensus 34 kPefS~~sW~aMlf~aG~G~gll 56 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLM 56 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhh
Confidence 45688888888888877777764
|
properties inherent to their polypeptide chains. |
| >PLN00150 potassium ion transporter family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=2 Score=47.43 Aligned_cols=220 Identities=13% Similarity=0.143 Sum_probs=103.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhee---cccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+. ..++.-+..++|. +..+ +..
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~---~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~ 289 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSF---LFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WES 289 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhh---hhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEE
Confidence 3467788888888888888765554 4555555544444444444 3334333344442 1111 123
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|.|+.-.=-+.. .+|.+.+|-..-+.-+.++--+-.-+....-| + +.++|+.. ...+++.+-
T Consensus 290 LG~V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p-~--~~~npFf~----~iP~~~~~P 360 (779)
T PLN00150 290 LGGIVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHM-E--DVNDPFYR----SLPKPIYWP 360 (779)
T ss_pred ecceeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc-c--cccCcHHH----hCCchhHHH
Confidence 444567778988763221221 23455444332222222221111111111111 1 12345432 233444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCCC----chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKTQ----TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++.+ .|..-.++......+...+.+-+.+.+..+
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 44444443333333334444444555556789994 3344443322 465444433333333333456677777777
Q ss_pred HHHHHHHHHH
Q 007913 432 FSTLSIFMLM 441 (585)
Q Consensus 432 ~~~~~~~~~~ 441 (585)
++......+.
T Consensus 441 iAV~~vM~iT 450 (779)
T PLN00150 441 IAVVGVMIIT 450 (779)
T ss_pred hheehhhHHH
Confidence 7765555543
|
|
| >TIGR00794 kup potassium uptake protein | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.42 Score=52.09 Aligned_cols=222 Identities=17% Similarity=0.181 Sum_probs=107.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhee---cccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++=++.+.+.|+. ..++.-+..++|. +..+ +..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~kvg~---~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~ 243 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAKVGF---TFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVS 243 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eee
Confidence 3467777888888888888765554 4555555555444444444 3233333333332 2222 223
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|-|+.-.=.+.. .+|++.++-..-+.-+.++--+-.-+....-| + ...+|+... ..+|..+-
T Consensus 244 LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p 314 (688)
T TIGR00794 244 LGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLSKHP-E--AIKNPFFLS----IPDWALWP 314 (688)
T ss_pred ccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHhcCc-c--hhcCcHHHh----CchHHHHH
Confidence 445667889988763322222 23445433332222221111111111111111 1 123455432 33555554
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCC-CC---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPK-TQ---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-~~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ ...|.+++ .| .|..-.++......+...+.+-+.+.+..+
T Consensus 315 ~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYG 394 (688)
T TIGR00794 315 LFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYG 394 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhh
Confidence 44444444443334444444445555667799994 34444433 22 465444433333333334456677777777
Q ss_pred HHHHHHHHHHHH
Q 007913 432 FSTLSIFMLMAI 443 (585)
Q Consensus 432 ~~~~~~~~~~~~ 443 (585)
++......+..+
T Consensus 395 iaVt~tM~iTT~ 406 (688)
T TIGR00794 395 IAVTGTFLVTTC 406 (688)
T ss_pred hhhhhhhHHHHH
Confidence 777666665443
|
Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli. |
| >PLN00149 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.6 Score=48.32 Aligned_cols=223 Identities=14% Similarity=0.111 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhee---cccCCCCCCCCCcChhH--------HHHHHH
Q 007913 210 DPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFV---HGKTTNLDPFLPYGTEG--------VFEAAA 278 (585)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~~~~g~~~--------~~~~~~ 278 (585)
..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+. ..++.-+..+.|.-... -+..+.
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~---~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g~~~LG 275 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGF---LFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGGWMSLG 275 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCceeEeec
Confidence 357788888888888888765554 4555555544444444443 44444444444421111 122344
Q ss_pred HHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHHH
Q 007913 279 VVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLVS 358 (585)
Q Consensus 279 ~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (585)
.++.+.+|.|+.-.=-+. -.+|.+.+|-..-+.=+.++--+-.-++...-|...-+-++|+.. ...+++.+-+.
T Consensus 276 gV~L~iTG~EALyADlGH--F~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~----~iP~~~~~P~~ 349 (779)
T PLN00149 276 GILLCITGSEAMFADLGH--FSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYV----SVPEKLRWPVL 349 (779)
T ss_pred chhhcccchhhhhhcccC--CCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHH----hCCchhHHHHH
Confidence 556788899876332222 133555444332222222222222222222122111111235432 23344444444
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCCC----chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007913 359 VCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKTQ----TPINATLLVTTLSAIIALFSSLNILSSVFSFS 433 (585)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~~----~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~ 433 (585)
+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++.. .|..-.++.....++...+.+-+.+.+..+++
T Consensus 350 vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiA 429 (779)
T PLN00149 350 VIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLA 429 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhh
Confidence 444433333333334444444455556789994 3334443322 46544444333333334445667777777777
Q ss_pred HHHHHHHH
Q 007913 434 TLSIFMLM 441 (585)
Q Consensus 434 ~~~~~~~~ 441 (585)
......+.
T Consensus 430 V~~vM~iT 437 (779)
T PLN00149 430 VITVMLVT 437 (779)
T ss_pred hehHHHHH
Confidence 65555543
|
|
| >PRK10745 trkD potassium transport protein Kup; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.7 Score=45.30 Aligned_cols=222 Identities=15% Similarity=0.162 Sum_probs=104.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecc--cCCCCCCCCCc---------ChhHHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG--KTTNLDPFLPY---------GTEGVFEAA 277 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~---------g~~~~~~~~ 277 (585)
+..+++++++.+..+.-+|....++ .+..+.++=++.+.+.|+... +++-+..++|. +..+ +..+
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~---~FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~g-f~~L 218 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGK---LFAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTVS-FFAL 218 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhh---hhhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCce-EEEe
Confidence 3467777778888888888765554 455555555544444444432 22222233332 2211 1234
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYLV 357 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (585)
..++.+.+|-|+.-.=.+. -.+|.+.++-..-+.-+.++.-+-.-+....-| + ..++|+... ..+|..+-+
T Consensus 219 G~V~L~vTGaEALYADmGH--FG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p-~--~~~NpFf~~----~P~~~~~p~ 289 (622)
T PRK10745 219 GAVVLAITGVEALYADMGH--FGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNP-E--AIKNPFFLL----APDWALIPL 289 (622)
T ss_pred cceeeeccchHHHhhccCC--CCccceeeeehhhHHHHHHHHhcchHHHHhcCc-h--hhcCcHHHh----CChhHHHHH
Confidence 4456777898876322222 134555544332222122221111111111111 1 124555433 334555544
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCC-CC---chHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007913 358 SVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPK-TQ---TPINATLLVTTLSAIIALFSSLNILSSVFSF 432 (585)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-~~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~ 432 (585)
.+.+.++..-+..+.+.++=-+....-+-|.+|+ ...|.+++ .| .|..-.++......+...+.+-+.+.+..++
T Consensus 290 viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGi 369 (622)
T PRK10745 290 LILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGI 369 (622)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhh
Confidence 4444444443334444444445555667799994 34444433 22 4554333333332233333455677777777
Q ss_pred HHHHHHHHHHH
Q 007913 433 STLSIFMLMAI 443 (585)
Q Consensus 433 ~~~~~~~~~~~ 443 (585)
+......+..+
T Consensus 370 AVt~tM~iTT~ 380 (622)
T PRK10745 370 AVTGTMVLTSI 380 (622)
T ss_pred hheeHhHHHHH
Confidence 66555555443
|
|
| >PRK09950 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=2.9 Score=44.50 Aligned_cols=23 Identities=9% Similarity=0.125 Sum_probs=19.2
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|.++|.++.+++.+++-+|.|+.
T Consensus 81 kPefS~~sW~aMlf~aG~G~gll 103 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTL 103 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHH
Confidence 56799999999999888888764
|
|
| >PLN00148 potassium transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.8 Score=47.87 Aligned_cols=220 Identities=13% Similarity=0.130 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhhe---ecccCCCCCCCCCc---------ChhHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGF---VHGKTTNLDPFLPY---------GTEGVFEA 276 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~~~~---------g~~~~~~~ 276 (585)
+..+++++++.+..+.-+|+...++ .+..+.++-++.+...|+ .+.++.-+..++|. +..+ +..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~---~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~ 272 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAF---MFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WIS 272 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHh---hhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEe
Confidence 3467778888888888888765554 455555554444444444 34444434444442 2111 123
Q ss_pred HHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHHHHH
Q 007913 277 AAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWAKYL 356 (585)
Q Consensus 277 ~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (585)
+..++.+.+|.|+.-.=-+.. .+|.+.+|-..-+.=+.++--+-.-+....-| + +.++|+.. ...++..+-
T Consensus 273 LGgV~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf~----~iP~~~~~P 343 (785)
T PLN00148 273 LGGILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFYD----SIPDPVFWP 343 (785)
T ss_pred ecchheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHHH----hCCchhHHH
Confidence 445567788988763322221 23555444332222222221111222222112 1 12345433 233444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCCC-C---chHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007913 357 VSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPKT-Q---TPINATLLVTTLSAIIALFSSLNILSSVFS 431 (585)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~~-~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~ 431 (585)
+.+.+.++..-+.-+.+.++=-+....-+-|.+|+ +.-|.+++. | .|..-.++.....++...+.+-+.+.+..+
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 44433333333333333344344445556789994 344444332 2 465544444443334444456677777777
Q ss_pred HHHHHHHHHH
Q 007913 432 FSTLSIFMLM 441 (585)
Q Consensus 432 ~~~~~~~~~~ 441 (585)
++......+.
T Consensus 424 iAV~~vM~iT 433 (785)
T PLN00148 424 LACMTVMFIT 433 (785)
T ss_pred hheeeHHHHH
Confidence 6665544443
|
|
| >COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.47 E-value=4.1 Score=42.96 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC-CCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHH---HH
Q 007913 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAH-MIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSS---VF 430 (585)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg-~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~---~~ 430 (585)
.+..+..++....-..+...+.+-++-.++..| .-|+..-|+- +++ +.++++..+.+.+.++.+.+ +.
T Consensus 405 ~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~v-~~~~ia~~lL~~ggl~aLqt~~ii~ 476 (537)
T COG1292 405 TLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WGV-LIGLIAAVLLLIGGLEALQTAAIIT 476 (537)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HHH-HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 333343333334444556667777787777665 2233333321 333 34444555555554444444 44
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 007913 431 SFSTLSIFMLMAIALLVRRYYE 452 (585)
Q Consensus 431 ~~~~~~~~~~~~~~~l~~r~~~ 452 (585)
...+.+..++.+.+.++--+++
T Consensus 477 alPF~~vll~~~~sl~k~l~~d 498 (537)
T COG1292 477 ALPFSLVLLVMMFSLIKDLKQD 498 (537)
T ss_pred HccHHHHHHHHHHHHHHHHHhh
Confidence 4555666666777777644443
|
|
| >KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.2 Score=44.11 Aligned_cols=302 Identities=11% Similarity=0.069 Sum_probs=135.4
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhH---
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFL--- 148 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~--- 148 (585)
++-+|+.|+|+.+..=.+..+..+.+...+..++..-.+. .+.+++++=++.......-+ +.|..|+-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~~lns-------~~G~~yhIsFpv 122 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFLVLNS-------RPGSDYHISFPV 122 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHHHHcc-------CCCcccccceee
Confidence 4457899999999887777777777766666654312222 55555554444333322222 234445433
Q ss_pred --HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------cCCccchhcccccCCCCCcchHHHHHHHHH-
Q 007913 149 --RVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDS------NNSDLLRFKVDCFADGFNLLDPVAVLILLV- 219 (585)
Q Consensus 149 --~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 219 (585)
+..||=+.+-.--..-.+..++--...+...++.++.++.+ +.++++. -+.... -..++..+..+
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~-----~~~~tt-~e~i~FfIFwv~ 196 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLG-----KPGTTT-YEFIGFFIFWVA 196 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccC-----CCCCch-HHHHHHHHHHHH
Confidence 22444333322222333333344444555555555555432 1112111 011111 12344333333
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecccC--C-CCCCCCCcChhHHHHHHHHHHHHhhcHhHHhhhh--
Q 007913 220 CNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGKT--T-NLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMA-- 294 (585)
Q Consensus 220 ~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~-~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~-- 294 (585)
...+.+++.....++...-.+......+.+.+..+...+. + +..+-...+..-.+.-+-.+...+.++.....-.
T Consensus 197 s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pD 276 (572)
T KOG2466|consen 197 SLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPD 276 (572)
T ss_pred hhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCch
Confidence 3334445666666665555555545555555555544332 1 1112222232222223334455555655444433
Q ss_pred --hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccHHHHHHH-------HhCcHHHHHHHHHHHH
Q 007913 295 --EETKKPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDM---NAAYSIAFR-------QIGMNWAKYLVSVCAL 362 (585)
Q Consensus 295 --~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~ 362 (585)
.=.|+|. +.+..-+.++-+...+..+..++. ....+.+-. -+|+ +++. ..|...+..++..+..
T Consensus 277 FsRF~ksp~-a~~~~Ql~alp~~~~l~~liGVlv--~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~~~f~ 352 (572)
T KOG2466|consen 277 FSRFAKSPN-AIWWGQLIALPLPFGLTPLIGVLV--TSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIGFGFA 352 (572)
T ss_pred hHhhcCCCC-ccchhhhhhhhhhhhhhhheeeEe--hhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHHHHHH
Confidence 3345552 223333332222222111111110 001111111 1343 3333 2355577778888888
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhc
Q 007913 363 KGMTTSLLVGSLGQARYTTQIARAHMIPPWFAL 395 (585)
Q Consensus 363 ~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~ 395 (585)
++.++...+.-..++ ++.-.+++||++.-
T Consensus 353 laql~~NISan~vaa----gnDl~~L~PkyinI 381 (572)
T KOG2466|consen 353 LAQLGTNISANSVAA----GNDLSALLPKYINI 381 (572)
T ss_pred HHHHhcchhcccccc----chhhHhhCcceEEe
Confidence 888876554322222 23344688888754
|
|
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
Probab=95.29 E-value=5.4 Score=43.20 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=49.8
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHhheec-cc--------CCCCCCCCCcChhHHHHHHHHHHHHh-hcHhHHhhh
Q 007913 224 AMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH-GK--------TTNLDPFLPYGTEGVFEAAAVVYWSY-TGFDMVATM 293 (585)
Q Consensus 224 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~-~G~e~~~~~ 293 (585)
...|+|..+|+......+-.+.++++.+-++.. +. ..+++...+ ..-+..++..++|+. .|+.....+
T Consensus 195 i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~--~~vW~~A~~Q~ffsl~ig~G~~it~ 272 (523)
T PF00209_consen 195 IWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLD--PKVWIAALGQVFFSLSIGFGIMITY 272 (523)
T ss_dssp TTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTS--HHHHHHHHHHHHHHTTTTSSHHHHH
T ss_pred eEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhH--HHHHHHHHHHHhhccCCCcceEEEE
Confidence 356888887776665543333333333332211 00 112222211 233566777888887 577777777
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHHHHHHHH
Q 007913 294 AEETKKPSRDIPIGLVGSMCMITAVYCLMA 323 (585)
Q Consensus 294 ~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~ 323 (585)
+.-.|+ ++|++|...........+.++..
T Consensus 273 ~Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 273 GSYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HTTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred cCcCCC-CccccccceEEEcCchhhhHhHH
Confidence 776665 57888866655555555444433
|
High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B .... |
| >PRK09928 choline transport protein BetT; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=10 Score=41.70 Aligned_cols=91 Identities=7% Similarity=-0.045 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHH---HHHHH
Q 007913 355 YLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNIL---SSVFS 431 (585)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l---~~~~~ 431 (585)
.++.+..++..+....++.-+++-++-.++..|.-|+ .-.|+...=.|++.+ ++++..+...+.++.+ .-+.+
T Consensus 409 ~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~---~~pp~~~RifW~v~i-g~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 409 TFSASVATITGLLFYVTSADSGALVLGNFTSKLKDIN---SDAPNWLRVFWSVAI-GLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCC---CCCCcceeeHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444455555666777766666553221 111122223345543 3334444444444444 44445
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007913 432 FSTLSIFMLMAIALLVRR 449 (585)
Q Consensus 432 ~~~~~~~~~~~~~~l~~r 449 (585)
+...+..++.+.+.++.-
T Consensus 485 lPf~~I~ll~~~sl~k~l 502 (679)
T PRK09928 485 LPFSFVIFFVMAGLYKSL 502 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555566666666666533
|
|
| >PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.044 Score=51.49 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=0.0
Q ss_pred ccCCCCCchHHHHHHHHHH
Q 007913 395 LVHPKTQTPINATLLVTTL 413 (585)
Q Consensus 395 ~~~~~~~~P~~ai~~~~~i 413 (585)
|.+||--.|..++.+..++
T Consensus 13 ~r~pr~p~~~a~l~~~~ll 31 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLL 31 (381)
T ss_dssp -------------------
T ss_pred CCCCCCCCcchhHHHHHHH
Confidence 4566666676666554443
|
LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B. |
| >KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.56 E-value=3.1 Score=43.50 Aligned_cols=68 Identities=19% Similarity=0.127 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcccccCCCCCCccccc-chHHHHHHHHHHHHHh---cCC-HHHHHHHHHHHHHHHHHHHHhh
Q 007913 494 VTIAPWFLGTLGMALLPKQRVPKLWGVPLV-PWLPSLSIAMNLFLIG---SLG-YLAFLRFIICSAVMLVYYLLVG 564 (585)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~i~~~~y~~~~ 564 (585)
.........+.++..+.+++.+|++|+|.. |.+- ++.+++++. ..+ .....+....++.|+.+|+...
T Consensus 368 ~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~---~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i 440 (479)
T KOG1287|consen 368 WLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILF---LLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFI 440 (479)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHH---HHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEE
Confidence 344445556677777778889999999864 4433 333333333 222 2224566777788898887654
|
|
| >PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=91.50 E-value=22 Score=37.97 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=19.4
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|.+++.++.+++.+++-+|.|+.
T Consensus 83 kPefs~~sW~aMlf~aG~G~gll 105 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVL 105 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhh
Confidence 66799999999999888888874
|
|
| >COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.27 E-value=28 Score=37.06 Aligned_cols=228 Identities=16% Similarity=0.209 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheecc--cCCCCCCCCCc---------ChhHHHHHH
Q 007913 209 LDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHG--KTTNLDPFLPY---------GTEGVFEAA 277 (585)
Q Consensus 209 ~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~---------g~~~~~~~~ 277 (585)
+..+++++++.+..+.-+|....++ ++..+.++-++.+...|+.+. +++-+...+|. ++.+++ .+
T Consensus 148 Vvpitl~IL~~LF~iQ~~GT~~Vg~---~FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~-vL 223 (627)
T COG3158 148 VVPITLIILVLLFLIQRFGTGRVGK---LFGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFF-VL 223 (627)
T ss_pred cHHHHHHHHHHHHHHhcccchhhhh---hhccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEE-Ee
Confidence 4467777788888888888765554 566666666666666666542 22222222231 222211 12
Q ss_pred HHHHHHhhcHhHHhhhhhhhcCC-CCChhhHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccHHHHHHHHhCcHHHHH
Q 007913 278 AVVYWSYTGFDMVATMAEETKKP-SRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKY 355 (585)
Q Consensus 278 ~~~~~~~~G~e~~~~~~~E~k~p-~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 355 (585)
...+.+.+|-|+.-. ++-+= +|.+-+|=..-..= .++.++.-.+..--.+. ...+|+.. ....|...
T Consensus 224 GaVfLavTGaEALYA---DmGHfGr~pI~~AWf~vv~P----~L~LNY~GQGA~vL~~p~a~~npFF~----~~P~~ali 292 (627)
T COG3158 224 GAVFLAVTGAEALYA---DMGHFGRKPIRVAWFFVVLP----CLLLNYFGQGALLLSNPEAIGNPFFL----LAPDWALI 292 (627)
T ss_pred eeeeeeeccHHHHHh---hccccCCccHHHHHHHHHHH----HHHHHHccccceeccCcccccCcHHH----hChhhHHH
Confidence 334566788887532 33332 34544332211110 12222221111000010 11235332 23344333
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCCch-hhhccCCC-CC---chHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007913 356 LVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPP-WFALVHPK-TQ---TPINATLLVTTLSAIIALFSSLNILSSVF 430 (585)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~lP~-~~~~~~~~-~~---~P~~ai~~~~~i~~~~~~~~~~~~l~~~~ 430 (585)
-+.+.+..+..-+..+.+.++=-+....-|-|++|+ ...+.+++ .| .|..-.++...+..+..-+.+-..+.+..
T Consensus 293 P~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAY 372 (627)
T COG3158 293 PLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAY 372 (627)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhh
Confidence 333322222222222222233233344457799994 34444433 22 46655544444443333344456666666
Q ss_pred HHHHHHHHHHHHH-HHHHHHhc
Q 007913 431 SFSTLSIFMLMAI-ALLVRRYY 451 (585)
Q Consensus 431 ~~~~~~~~~~~~~-~~l~~r~~ 451 (585)
+++......+..+ ...+.|++
T Consensus 373 GiAVTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 373 GIAVTGTMVITTILLTVVMRKK 394 (627)
T ss_pred ChheeehhHHHHHHHHHHHHHh
Confidence 6655544444433 33444544
|
|
| >COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.18 E-value=22 Score=35.78 Aligned_cols=245 Identities=11% Similarity=0.073 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhhccC------CCchhHhHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007913 115 LSYLASGLSALLSA-FCYTEFAVEIPV------AGGSFSFLRVE-LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASM 186 (585)
Q Consensus 115 ~~~ll~~~~~~~~a-~~~~el~s~~P~------~Gg~y~~~~~~-~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~ 186 (585)
++|++-+.+..+++ +++.-++.++.. +=...++.+.. -+++.-++.+....+.....+...-.+.+..+...
T Consensus 72 lgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~ 151 (473)
T COG4145 72 LGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETA 151 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45666666665543 455555544431 22344555544 56788899999888888888888888889988888
Q ss_pred hcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheec----------
Q 007913 187 IDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVH---------- 256 (585)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---------- 256 (585)
.+ .+-. ...-+...........-|.|....-..+-..+.++.-+++.+..+..
T Consensus 152 ~g-idY~----------------tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~t 214 (473)
T COG4145 152 LG-IDYT----------------TGLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVET 214 (473)
T ss_pred HC-CCch----------------hhHHHHHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 77 2210 01111111222233345666665544444444444333333322211
Q ss_pred ---ccCCCCCCCCCcC--hhHHHHHH-HHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH-H--
Q 007913 257 ---GKTTNLDPFLPYG--TEGVFEAA-AVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMALAL-T-- 327 (585)
Q Consensus 257 ---~~~~~~~~~~~~g--~~~~~~~~-~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~-~-- 327 (585)
.|++-..|...+. ...++..+ ....+...|.-....-.-..|| +|.+.++|+.+..++.++-+.+-++- .
T Consensus 215 l~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~gr 293 (473)
T COG4145 215 LTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGR 293 (473)
T ss_pred HHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhh
Confidence 1111112221111 11222222 1223334444333333344577 47788888888877776655544431 1
Q ss_pred hcccccccccccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 007913 328 MMVKYTEIDMNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQAR 378 (585)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 378 (585)
.+.| |-...|.-++..+-+...|....++..+.+.+.+++.++.+.-.|-
T Consensus 294 aViP-dlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~ss 343 (473)
T COG4145 294 AVIP-DLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSS 343 (473)
T ss_pred hhcC-CCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223 2222444555666667777777777777777888887776655544
|
|
| >TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters | Back alignment and domain information |
|---|
Probab=88.50 E-value=33 Score=35.47 Aligned_cols=42 Identities=17% Similarity=0.102 Sum_probs=30.1
Q ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 341 YSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
..+..+..-+++...++.++.+.+-.+|..+..++..=+...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455566678889999999988888888877765544443
|
This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene |
| >KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.67 E-value=16 Score=39.47 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=102.9
Q ss_pred CchhHhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHH-
Q 007913 142 GGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVC- 220 (585)
Q Consensus 142 Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 220 (585)
...|.|.+..|++....+....+.+..........+.-+..++...+ .+ .+.....+..++
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg-~~-----------------~~l~~~~~~~ic~ 169 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG-IN-----------------LYLIVVILGLICV 169 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc-cC-----------------ceeehHHHHHHHH
Confidence 47899999999998655555555555555444444444444444443 10 001111122222
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhheeccc-------------CCCCC-CCCC-----cChhHHHHHHHHHH
Q 007913 221 NGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVGFVHGK-------------TTNLD-PFLP-----YGTEGVFEAAAVVY 281 (585)
Q Consensus 221 ~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~-~~~~-----~g~~~~~~~~~~~~ 281 (585)
.....-|.|..-+...+=+.+.+...+.+++.+..... ..|+. .+.. +.+..++.|-....
T Consensus 170 ~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~ 249 (585)
T KOG2349|consen 170 FYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMW 249 (585)
T ss_pred HHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHH
Confidence 22233466666665666666666666666665543211 01111 1221 12223555544555
Q ss_pred HHhhcHhHHh-hhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHh-cccccc--------cc-cccHHHHHHHHhCc
Q 007913 282 WSYTGFDMVA-TMAEETKKPSRDIPIGLVGSMCMITAVYCLMALALTM-MVKYTE--------ID-MNAAYSIAFRQIGM 350 (585)
Q Consensus 282 ~~~~G~e~~~-~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~-~~~~~~--------~~-~~~~~~~~~~~~~~ 350 (585)
..+.|.+... +----.|+ .|+..+++........+...+....-.. ..-+.+ .. +|.-.+.......+
T Consensus 250 l~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~ 328 (585)
T KOG2349|consen 250 LSYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMG 328 (585)
T ss_pred HHHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcC
Confidence 5556655432 21112222 2444555555544444443333222110 000111 11 22222333333332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007913 351 --NWAKYLVSVCALKGMTTSLLVGSLGQARYTTQ 382 (585)
Q Consensus 351 --~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~ 382 (585)
+...-++..++..+.++++.+.+.+.|-+.+.
T Consensus 329 ~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 329 HLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred CCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33444555566666777777777778877664
|
|
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=80.95 E-value=68 Score=34.57 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=30.4
Q ss_pred ccCCCCCCcccccc----hHHHHHHHHHHHHHhc-------------CCHHHHHH--HHHHHHHHHHHHHHhhccc
Q 007913 511 KQRVPKLWGVPLVP----WLPSLSIAMNLFLIGS-------------LGYLAFLR--FIICSAVMLVYYLLVGLHA 567 (585)
Q Consensus 511 ~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~-------------~~~~~~~~--~~~~~~i~~~~y~~~~~~~ 567 (585)
+++.+|+||.|..+ ....++++.+++.+.. ++|..... ++++.++++++|..++||+
T Consensus 389 ~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~ 464 (507)
T TIGR00910 389 HPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKG 464 (507)
T ss_pred cCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55677889998654 3445555555544431 12222211 1234556677776666554
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 585 | ||||
| 3l1l_A | 445 | Structure Of Arg-Bound Escherichia Coli Adic Length | 6e-08 | ||
| 3lrb_A | 445 | Structure Of E. Coli Adic Length = 445 | 7e-08 | ||
| 3ob6_A | 445 | Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo | 7e-08 | ||
| 3ncy_A | 445 | X-Ray Crystal Structure Of An Arginine Agmatine Ant | 2e-07 | ||
| 3gi8_C | 444 | Crystal Structure Of Apct K158a Transporter Bound T | 5e-05 | ||
| 3gi9_C | 444 | Crystal Structure Of Apct Transporter Bound To 7f11 | 5e-05 |
| >pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 | Back alignment and structure |
|
| >pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 | Back alignment and structure |
|
| >pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 | Back alignment and structure |
|
| >pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 | Back alignment and structure |
|
| >pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
| >pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 | Back alignment and structure |
|---|
Score = 323 bits (831), Expect = e-105
Identities = 77/427 (18%), Positives = 177/427 (41%), Gaps = 25/427 (5%)
Query: 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEF 134
K L+ W+ + G ++G+ IF I G AK AG + +++ SG+ ALL A+ YT+
Sbjct: 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAK-IAGRNLPETFILSGIYALLVAYSYTKL 62
Query: 135 AVEIPVAGGSFSFLRVELGD-FVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSD 193
+I G +F+ +GD + + + + V+ A A+ ++ Y +I++ +
Sbjct: 63 GAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINT 122
Query: 194 LLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIVG 253
+ + I+ + G++ + +V ++ I G
Sbjct: 123 FN-------------IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAG 169
Query: 254 FVHGKTTNLDP-FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGSM 312
+ + + P P G+ A+A+ + SY GF ++ +E + P +++P + S+
Sbjct: 170 LITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229
Query: 313 CMITAVYCLMALALTMMVKYTEIDMNAAYSI--AFRQIGMNWAKYLVSVCALKGMTTSLL 370
++ VY +A++ + E+ + ++ A + N L+S+ AL +++++
Sbjct: 230 LIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMN 289
Query: 371 VGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVF 430
G A +A+ +P +F T + + L + AL ++ ++S+
Sbjct: 290 ATIYGGANVAYSLAKDGELPEFFERKVWFKSTE--GLYITSALGVLFALLFNMEGVASIT 347
Query: 431 SFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWI 490
S + I++ + ++ + E + + F+V L V + + + R
Sbjct: 348 SAVFMVIYLFVILSHYILI-DEVGGRKEIVIFSFIVVLGVFLL----LLYYQWITNRFVF 402
Query: 491 GYVVTIA 497
++
Sbjct: 403 YGIIATF 409
|
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 8e-71
Identities = 87/440 (19%), Positives = 162/440 (36%), Gaps = 34/440 (7%)
Query: 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFC 130
S + +T + G+++GSG+F++ A G + +L + + AL +
Sbjct: 2 SSDADAHKVGLIPVTLMVSGAIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMV 59
Query: 131 YTEFAVEIPVAGGSFSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSN 190
Y + + P GGS+++ R G F+ Y L +G + YL+
Sbjct: 60 YAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL 119
Query: 191 NSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVI 250
+ L V++L + + + G + + + ++++++ IV +
Sbjct: 120 KDPWV-------------LTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIA 166
Query: 251 IVGFVHGKTTNLDPFLPYGTEGVFE----AAAVVYWSYTGFDMVATMAEETKKPSRDIPI 306
+ G+ + G F V WS+ G + + A K P R++PI
Sbjct: 167 VFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI 226
Query: 307 GLVGSMCMITAVYCLMALALTMMVKYTEI-DMNAAYSIAFRQIGMNWAKYLVSVCALKGM 365
+G + + Y L A+ M+ + + + A R + A +VS CA G
Sbjct: 227 ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGC 286
Query: 366 TTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAIIAL------ 419
SL +L + A + PP FA V+ K TP+ ++V L I L
Sbjct: 287 LGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPN 345
Query: 420 -FSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGI 478
++SSV TL ++ ALL+ + + +A I
Sbjct: 346 ATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG------KARPAYLAVTTIAFLYCI 399
Query: 479 TAFWNSNGRGWIGYVVTIAP 498
A S + + VT+
Sbjct: 400 WAVVGSGAKEVMWSFVTLMV 419
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 7e-66
Identities = 77/470 (16%), Positives = 160/470 (34%), Gaps = 46/470 (9%)
Query: 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGL-SALLSAFCYTE 133
+ LT L F ++ S + + +G ++V L G+ + C E
Sbjct: 4 SVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGLCAAE 63
Query: 134 FAVEIPVAGGS-FSFLRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNS 192
A G F+++ LG + A L+ +G + L+ ++
Sbjct: 64 MATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPAL 123
Query: 193 DLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSCVIVFVIIV 252
+ A++IL GT+ ++ + + + F++I
Sbjct: 124 NEDPI----------TKTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIA 173
Query: 253 GFV---------HGKTTNLDPFLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRD 303
+ + F + G SY G + AT E P RD
Sbjct: 174 LAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRD 233
Query: 304 IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQI------GMNWAKYLV 357
P+ ++ M + + L++ M++ EI+++A F + + W ++
Sbjct: 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVI 293
Query: 358 SVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAII 417
S L G+ + +G +R A+ +++P FA ++ K P+ + +++I
Sbjct: 294 SALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIA 352
Query: 418 ALF---------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDV-----TPKNNLVK 463
+ S I ++ L + ++ I +V D+ P VK
Sbjct: 353 LIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVK 412
Query: 464 FLVCLTVVVASSIGITAFW----NSNGRGWIGYVVTIAPWFLGTLGMALL 509
+V + ++ S + + N G YV + FL L + +
Sbjct: 413 LVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPFI 462
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 57/389 (14%), Positives = 110/389 (28%), Gaps = 87/389 (22%)
Query: 185 SMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSSWLNWISSIVSSC 244
D+L D F D F+ C + + SI+S
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFD------------CKDV----------QDMPKSILSKE 49
Query: 245 VIVFVIIVGFVHGKTTNL-DPFLPYGTEGV--F--EAAAVVY-WSYTGFDMVATMAEETK 298
I +I+ T L L E V F E + Y + +++ + E +
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF------LMSPIKTEQR 103
Query: 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI----AFRQI-----G 349
+PS + L Y + + A Y++ + ++
Sbjct: 104 QPSMM----------TRMYIEQRDRL-------YNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 350 MNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMIPPWFALVHPKTQT----PIN 405
+ AK ++ + + G + + + + Y Q I W L + + +
Sbjct: 147 LRPAKNVL-IDGVLGSGKTWVALDVCLS-YKVQCKMDFKIF-WLNLKNCNSPETVLEMLQ 203
Query: 406 ATLLVTTLSAIIALFSSLNILSSVFSFST-LSIFMLM---AIALLVRRYYEKDVTPKNNL 461
L + S NI + S L + LLV +V
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----NVQNAKAW 259
Query: 462 VKFLV-CLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLW-G 519
F + C ++ +T F ++ I + + +LL K +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLK------YLD 312
Query: 520 VPLVPWLPSLSIAMNLFLIGSLGYLAFLR 548
LP + N + + +R
Sbjct: 313 CR-PQDLPREVLTTNPRRLSIIA--ESIR 338
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 100.0 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 100.0 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 100.0 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 99.26 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 98.72 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 98.69 | |
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 97.9 | |
| 4ain_A | 539 | Glycine betaine transporter BETP; membrane protein | 94.86 | |
| 2wsw_A | 509 | BCCT family betaine/carnitine/choline transporter; | 89.86 |
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-53 Score=446.13 Aligned_cols=420 Identities=20% Similarity=0.288 Sum_probs=357.4
Q ss_pred CccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHh
Q 007913 73 QPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVEL 152 (585)
Q Consensus 73 ~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~ 152 (585)
++.||+++.++++++.+++++|+|+|..++.. .. +||.++++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 34679999999999999999999999998875 34 78888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 153 GDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 153 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
||.+|++.||.+++.+....+.+....++++...++. ....+ ...+++++++++++.+|++|+|..+
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPI-LKDPW------------VLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGG-GGSHH------------HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcc-ccccH------------HHHHHHHHHHHHHHHHHHhchHHHH
Confidence 9999999999999999999888888888888766551 11111 1346788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCC-CCCCcC---hhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLD-PFLPYG---TEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGL 308 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai 308 (585)
+++.+++.++++.++++++.++.+.+.+++. ++.+.+ +.+++.++...+|+|.|+|..++++||+|||+|++||++
T Consensus 149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~ 228 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHH
Confidence 9999999999999988888887766655543 343433 457888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC
Q 007913 309 VGSMCMITAVYCLMALALTMMVKYTEID-MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 309 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg 387 (585)
..+..+++++|++..++.....|+++.. .++|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||
T Consensus 229 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg 308 (445)
T 3l1l_A 229 IGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998888887764 456999999988888899999999999999999999999999999999999
Q ss_pred CCchhhhccCCCCCchHHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Q 007913 388 MIPPWFALVHPKTQTPINATLLVTTLSAIIALF-------SSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKDVTPKNN 460 (585)
Q Consensus 388 ~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~ 460 (585)
.+|++|+|+| |+++|+++++++++++.++.+. ..++.+.++.+...++.|.+.+++++++|+|+| ++
T Consensus 309 ~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~---- 382 (445)
T 3l1l_A 309 LFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK---- 382 (445)
T ss_dssp SSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG----
T ss_pred CCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc----
Confidence 9999999999 6799999999999988776654 347899999999999999999999999998754 11
Q ss_pred hhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCcccccchHHHHHHHHHHHHHhc
Q 007913 461 LVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLVPWLPSLSIAMNLFLIGS 540 (585)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 540 (585)
|.|..++++.++.+.+++++..
T Consensus 383 ----------------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~ 404 (445)
T 3l1l_A 383 ----------------------------------------------------------ARPAYLAVTTIAFLYCIWAVVG 404 (445)
T ss_dssp ----------------------------------------------------------GCTTTHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------ccchhHHHHHHHHHHHHHHHHH
Confidence 1134567888888888888888
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcccccch
Q 007913 541 LGYLAFLRFIICSAVMLVYYLLVGLHATYDV 571 (585)
Q Consensus 541 ~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~ 571 (585)
.++..+....+++++|+++|+.++||++++.
T Consensus 405 ~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 435 (445)
T 3l1l_A 405 SGAKEVMWSFVTLMVITAMYALNYNRLHKNP 435 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSTTCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhhcccCc
Confidence 8888888889999999999987766554433
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-51 Score=430.73 Aligned_cols=365 Identities=19% Similarity=0.342 Sum_probs=327.1
Q ss_pred ccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 74 PLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 74 ~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
+.||+++.++.+++++++++|+|++..++..... +||..+++|+++++++++++++++|+++++|++||.|+|+++.+|
T Consensus 3 ~~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 3 LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHC
T ss_pred ccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhC
Confidence 3578999999999999999999999999988776 899999999999999999999999999999999999999999999
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 154 DFV-AYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 154 ~~~-g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
|.+ +...+|.+++.+....+.++..+++++...++ ..++.+ ...+++.+++++++.+|++|.|..+
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~~in~~g~~~~~ 148 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLIN-APINTF------------NIAITEIGIVAFFTALNFFGSKAVG 148 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCHH------------HHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchH------------HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 963 55568999999999999999999999998876 322222 1236788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecccCCCCCC-CCCcChhHHHHHHHHHHHHhhcHhHHhhhhhhhcCCCCChhhHHHHH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHGKTTNLDP-FLPYGTEGVFEAAAVVYWSYTGFDMVATMAEETKKPSRDIPIGLVGS 311 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~~p~ai~~~ 311 (585)
+++.+++.++++.++++++.++...+++|+.+ +.++++.+++.++...+|+|.|+|..++++||+|||+|++||++..+
T Consensus 149 ~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~ 228 (444)
T 3gia_A 149 RAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHH
Confidence 99999999999999988888887777777765 55667778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc--cccHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcCCC
Q 007913 312 MCMITAVYCLMALALTMMVKYTEID--MNAAYSIAFRQIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAHMI 389 (585)
Q Consensus 312 ~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg~l 389 (585)
..+++++|++..++.....|++++. ++.|+.++++...++++..++.+..+++.+++.++.+++.||++++|||||.+
T Consensus 229 ~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 308 (444)
T 3gia_A 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGEL 308 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999998888887764 34578888887777888889999999999999999999999999999999999
Q ss_pred chhhhccCCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007913 390 PPWFALVHPKTQTPINATLLVTTLSAIIALFSSLNILSSVFSFSTLSIFMLMAIALLVRRYYEKD 454 (585)
Q Consensus 390 P~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~r~~~~~ 454 (585)
|++|+|+| | ++|.++++++++++.++.++.+++.+.++.+.+.++.|.+.+++++++|+++|+
T Consensus 309 P~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 309 PEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp CSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred CHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999988 4 569999999999999888888999999999999999999999999999888643
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=418.67 Aligned_cols=436 Identities=16% Similarity=0.227 Sum_probs=319.7
Q ss_pred cCCccccccChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHHHHHHH-HHHHHHHHHhhh--hccCCCchhHh
Q 007913 71 SKQPLQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLASGLSA-LLSAFCYTEFAV--EIPVAGGSFSF 147 (585)
Q Consensus 71 ~~~~l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~~el~s--~~P~~Gg~y~~ 147 (585)
+++++||+++.+++++++++.++| ++..+. ... +|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~~~-~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--FAT-SGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--HHT-TTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--HHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 456789999999999999999986 443443 233 8888777777777665 569999999999 999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhh
Q 007913 148 LRVELGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSG 227 (585)
Q Consensus 148 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 227 (585)
+++.+||.+||+.||.++++++...+......+.++...+. . ++.+.+.+...+++++++++++.+|++|
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------p~~~~~~~~~~~~~~~~~~~~~~in~~g 148 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-W---------PALNEDPITKTIAALIILWALALTQFGG 148 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-C---------GGGTSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------cccccCcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999988888888888765531 0 1222222334578888899999999999
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHHHHhheecc---cC----CCCCCCCCcC-hhHHHHHHHHHHHHhhcHhHHhhhhhhhc
Q 007913 228 TRRSSWLNWISSIVSSCV-IVFVIIVGFVHG---KT----TNLDPFLPYG-TEGVFEAAAVVYWSYTGFDMVATMAEETK 298 (585)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 298 (585)
.|..++++.+.+.++++. ++++++.++... +. .+..++.|+. ..+.+.++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 149 TKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp SSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 999999999998875443 444444444321 11 1223333332 12344566778899999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHH----HHHHhC--cHHHHHHHHHHHHHHHHHHHHHh
Q 007913 299 KPSRDIPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSI----AFRQIG--MNWAKYLVSVCALKGMTTSLLVG 372 (585)
Q Consensus 299 ~p~r~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 372 (585)
||+|++|||+..++.+++++|++..+++....|+++...+++..+ +++..| .++...++.+..+++.+++.++.
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASW 308 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888765544433 334455 57888899999999999999999
Q ss_pred hhhhhHHHHHHHhcCCCchhhhccCCCCCchHHHHHHHHHHHHH-HHHHhh--------HHHHHHHHHHHHHHHHHHHHH
Q 007913 373 SLGQARYTTQIARAHMIPPWFALVHPKTQTPINATLLVTTLSAI-IALFSS--------LNILSSVFSFSTLSIFMLMAI 443 (585)
Q Consensus 373 ~~~~sR~l~~~ardg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~-~~~~~~--------~~~l~~~~~~~~~~~~~~~~~ 443 (585)
+++.||++++|||||.+|++|+|+| |+++|+++++++.++..+ +..+++ ++.+.++.+.+.++.|.+.++
T Consensus 309 ~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~ 387 (511)
T 4djk_A 309 IVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFI 387 (511)
T ss_dssp TTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 579999999998554333 333333 789999999999999999999
Q ss_pred HHHHHHhccCCCCCCCchhHHHHHHHHHHHHHhHHhhhccCCCcchHHHHHHHHHHHHHHHHHhcccccCCCCCCccccc
Q 007913 444 ALLVRRYYEKDVTPKNNLVKFLVCLTVVVASSIGITAFWNSNGRGWIGYVVTIAPWFLGTLGMALLPKQRVPKLWGVPLV 523 (585)
Q Consensus 444 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (585)
+++++|+|+++.+|++|.. .++.+.+.++++.+++.++.++..++|....+.. .
T Consensus 388 ~~~~~r~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~-- 441 (511)
T 4djk_A 388 GYIVLVLKHPDLKRTFNIP---------------------GGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGD---S-- 441 (511)
T ss_dssp HHHHHHHHCCSCCCSCCCS---------------------STTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTC---C--
T ss_pred HHHHHHHhCCCCCCCeecC---------------------CCchHHHHHHHHHHHHHHHHHHeeeeCCccccCC---c--
Confidence 9999999887777665521 1122334556666666677777777774433322 1
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhcc
Q 007913 524 PWLPSLSIAMNLFLIGSLGYLAFLRFIICSAVMLVYYLLVGLH 566 (585)
Q Consensus 524 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~ 566 (585)
.+++ .....+++++++.++|+.|+++
T Consensus 442 ----------------~~~~-~~~~~~~~~~~~~i~~~~~~~~ 467 (511)
T 4djk_A 442 ----------------TDMY-VELLVVSFLVVLALPFILYAVH 467 (511)
T ss_dssp ----------------CCCH-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------hHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 2233 2334556666666666665443
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-09 Score=110.13 Aligned_cols=283 Identities=12% Similarity=0.026 Sum_probs=153.3
Q ss_pred cccccChhHHHHHhhcccccccchhccHHhHhhccChh---HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHH
Q 007913 75 LQKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA---IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVE 151 (585)
Q Consensus 75 l~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~ 151 (585)
.+|+.++++.+.+=++..+..+.+..-+... .|.. ++++.+++.++........+.++.++-.+ .....+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~---~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~--~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT---SSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGIN--FTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT---TTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCC--HHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCC--hhhhhHhh
Confidence 3577899999988888776665554333222 1332 55555555555555444455555544322 45577889
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhh
Q 007913 152 LGDFVAYIAAGNILLEAVVGAAGLARSWSSYLASMID---SNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGT 228 (585)
Q Consensus 152 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 228 (585)
||++.+.+......+..+...+......++.+...+. +..+ ..+..+++.++...+.+.|.
T Consensus 98 FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~----------------~~v~~~i~~~l~~~~~~~G~ 161 (501)
T 2jln_A 98 FGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN----------------LPLWIVIFGAIQVVTTFYGI 161 (501)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHHHHTTHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch----------------HHHHHHHHHHHHHHHHHhCH
Confidence 9999998888777766666666666666666665542 0111 11334445566777788999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhheecccC--CCCCCCCC-cChhHHHHHHHHH-HHHhhcHhHHhhhhhhhcCCCCC-
Q 007913 229 RRSSWLNWISSIVSSCVIVFVIIVGFVHGKT--TNLDPFLP-YGTEGVFEAAAVV-YWSYTGFDMVATMAEETKKPSRD- 303 (585)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k~p~r~- 303 (585)
|...+++.+...+.++.++.+.+..+...+. ++.....+ ....+++.++... .+...+.-..+.++.+.|++++.
T Consensus 162 ~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~ 241 (501)
T 2jln_A 162 TFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNAS 241 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcccc
Confidence 9999999999888777766665554443322 11111111 1122344444332 22223334567888888887541
Q ss_pred ----------hhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccHHHHHHHHhCcHHH-HHHHH-HHHHHHHHHHHHH
Q 007913 304 ----------IPIGLVGSMCMITAVYCLMALALTMMVKYTEIDMNAAYSIAFRQIGMNWA-KYLVS-VCALKGMTTSLLV 371 (585)
Q Consensus 304 ----------~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 371 (585)
.-.+...+..+...+..+........ ....+|...+.+...++.. ..+.. +..+++.+++...
T Consensus 242 ~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~ 316 (501)
T 2jln_A 242 REGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPA 316 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333332222222221111 1223455444443333322 45555 6666676665553
Q ss_pred -hhhhhhHHHHHH
Q 007913 372 -GSLGQARYTTQI 383 (585)
Q Consensus 372 -~~~~~sR~l~~~ 383 (585)
..++.+--+..+
T Consensus 317 ~n~ys~~~~l~~~ 329 (501)
T 2jln_A 317 ANLLSPAYTLCST 329 (501)
T ss_dssp HHTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 566666555543
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=98.72 E-value=0.00036 Score=75.07 Aligned_cols=282 Identities=14% Similarity=0.112 Sum_probs=140.7
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhc
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV-ITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELG 153 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~-~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g 153 (585)
.|+++++-...-.+++.+++..+. .++... . .|.. ..+.|. +.+.....++.+...-.+. +.-..++|.++.||
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y-~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg 123 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGY-S-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFN 123 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHH-H-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHH-H-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHcc
Confidence 477888866655556656554443 344333 3 4543 333322 2223333444444444443 34578999999999
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHHHHHHHHHhhhhhhhh
Q 007913 154 DFVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLILLVCNGIAMSGTRRSS 232 (585)
Q Consensus 154 ~~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~ 232 (585)
+....+.+....+.+.+ ..+....+.+..++..++ .+. ...+.+..++.......-|.|...
T Consensus 124 ~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G-i~~----------------~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 124 KKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IPL----------------MYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-CCH----------------HHHHHHHHHHHHHHHHTTC---CC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccH----------------HHHHHHHHHHHHHHHHhcchHHHH
Confidence 98877776655544433 344444555666666665 211 001212222334444556888877
Q ss_pred HHHHHHHHHHHHHHHHHHHhheecc----------------cCCCCCCCCCcC--------hhHHHH-HHHHHHHHhhcH
Q 007913 233 WLNWISSIVSSCVIVFVIIVGFVHG----------------KTTNLDPFLPYG--------TEGVFE-AAAVVYWSYTGF 287 (585)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~~~~g--------~~~~~~-~~~~~~~~~~G~ 287 (585)
+.+.+-.+++++..+++.+..+... .++.+..+.+.+ +...+. +.......+.|.
T Consensus 187 ~TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 266 (593)
T 2xq2_A 187 WTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGF 266 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcC
Confidence 7776666666554443333222110 011121111111 111111 121223345555
Q ss_pred h-HHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHH---HHHHhc-cc--------------cccc-ccccHHHHHHHH
Q 007913 288 D-MVATMAEETKKPSRDIPIGLVGSMCMITAVYCLMA---LALTMM-VK--------------YTEI-DMNAAYSIAFRQ 347 (585)
Q Consensus 288 e-~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l~~---~~~~~~-~~--------------~~~~-~~~~~~~~~~~~ 347 (585)
+ ...+..=+.||+ |+..|+...+......+.++.. +..... .+ ..+. +++..++... +
T Consensus 267 ~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~ 344 (593)
T 2xq2_A 267 NQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-Q 344 (593)
T ss_dssp TCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-H
T ss_pred ChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-H
Confidence 4 245555678886 6778888777655444333221 111111 00 1112 2344555556 6
Q ss_pred hCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 007913 348 IGMNWAKYLVSVCALKGMTTSLLVGSLGQARYT 380 (585)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l 380 (585)
..++++.-++.++.+.+.+++..+.+.+.|-.+
T Consensus 345 ~lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 345 FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888777777653
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-05 Score=80.58 Aligned_cols=285 Identities=13% Similarity=0.083 Sum_probs=137.7
Q ss_pred ccccChhHHHHHhhcccccccchhccHHhHhhccChh-HHHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPA-IVLSYLASGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGD 154 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~ 154 (585)
.|++++|-...-..++.+++..+......... .|.. ..+.|. +++.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 48899998877777766665554443333323 4543 333332 2222233344444443333 345789999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccCCccchhcccccCCCCCcchHHHHHHH--HHHHHHHhhhhhhh
Q 007913 155 FVAYIAAGNILLEAVV-GAAGLARSWSSYLASMIDSNNSDLLRFKVDCFADGFNLLDPVAVLIL--LVCNGIAMSGTRRS 231 (585)
Q Consensus 155 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~g~~~~ 231 (585)
....+.+....+.+.+ ..+......+..++..++ .+. ..++.+. +.......-|.|..
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G-i~~------------------~~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG-IPL------------------MYSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CCH------------------HHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCH------------------HHHHHHHHHHHHHHHHhcchHHH
Confidence 8877777655544433 334444445555666655 211 1112111 11222233477777
Q ss_pred hHHHHHHHHHHHHHHHHHHHhheecc----------------cCCCCCCC----CC-----cChhHHHHHHHHHHHHhhc
Q 007913 232 SWLNWISSIVSSCVIVFVIIVGFVHG----------------KTTNLDPF----LP-----YGTEGVFEAAAVVYWSYTG 286 (585)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~~~G 286 (585)
.+.+.+-.++.++..+++.+..+... +++.+..+ .+ .++..++.+.......|.|
T Consensus 157 ~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g 236 (530)
T 3dh4_A 157 VWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWG 236 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHc
Confidence 77666666555544433332222110 11111111 11 0111111122122334555
Q ss_pred HhH-HhhhhhhhcCCCCChhhHHHHHHHHHHHHHHH---HHHHHHhccc----------------ccccccccHHHHHHH
Q 007913 287 FDM-VATMAEETKKPSRDIPIGLVGSMCMITAVYCL---MALALTMMVK----------------YTEIDMNAAYSIAFR 346 (585)
Q Consensus 287 ~e~-~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l---~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 346 (585)
.+. ..+-.=..||+ |+..|+...+........++ ..++.....+ ++..+++..++...+
T Consensus 237 ~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~ 315 (530)
T 3dh4_A 237 FNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ 315 (530)
T ss_dssp TTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT
T ss_pred CCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH
Confidence 432 33444446776 56778877766544332211 1111111111 111234556666665
Q ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhcC
Q 007913 347 QIGMNWAKYLVSVCALKGMTTSLLVGSLGQARYTTQIARAH 387 (585)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~ardg 387 (585)
..++++.-++..+.+.+.+++..+.+.+.|-.+ ++|=
T Consensus 316 -~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Di 352 (530)
T 3dh4_A 316 -FLPVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDI 352 (530)
T ss_dssp -TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHT
T ss_pred -HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHH
Confidence 666777777777888888888888877777653 4553
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Probab=97.90 E-value=0.017 Score=60.18 Aligned_cols=238 Identities=17% Similarity=0.149 Sum_probs=119.9
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHH----HHHHHHHHHHHHHHhhhhccCCCchhHhHHHHhchh
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLA----SGLSALLSAFCYTEFAVEIPVAGGSFSFLRVELGDF 155 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll----~~~~~~~~a~~~~el~s~~P~~Gg~y~~~~~~~g~~ 155 (585)
+..+.+.-++|..+|.|-.-.......+.||.+-++-+++ .|+..+..=+++++.+++.-+.|..-.|-+ ...+.
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~-l~~~~ 88 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL-LWRNR 88 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH-HSCSH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH-hcCCc
Confidence 4566677788888999988888888877676653444443 333333333344444443444454444432 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccC------C--c--------cchhcc--cccCCC----CCcc
Q 007913 156 VAYIAAGNILLEAVVGAAGLARSWSSYLASMI----DSNN------S--D--------LLRFKV--DCFADG----FNLL 209 (585)
Q Consensus 156 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~----~~~~------~--~--------~~~~~~--~~~~~~----~~~~ 209 (585)
..-..||...+........+....+-.+.+.+ +..+ + . .|.... ++..++ .+..
T Consensus 89 ~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~~ 168 (519)
T 2a65_A 89 FAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFA 168 (519)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHH
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHHH
Confidence 11123333333222222222222222222211 1111 0 0 000000 000000 0111
Q ss_pred hHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHhheeccc-------------CCCCCCCCCcChhHHHH
Q 007913 210 DPVAVLILLVCNGIAMSGT-RRSSWLNWISSIVSSCVIVFVIIVGFVHGK-------------TTNLDPFLPYGTEGVFE 275 (585)
Q Consensus 210 ~~~~~~~~~~~~~i~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~~g~~~~~~ 275 (585)
.+.-.++.++...+..+|+ |-..|+.+++...-.+.++++.+-++...+ ..+++... +...+..
T Consensus 169 ~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~ 246 (519)
T 2a65_A 169 YIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHH
Confidence 2233444555667777899 778999999988777777666665543222 01122211 1234677
Q ss_pred HHHHHHHHh-hcHhHHhhhhhhhcCCCCChhhHHHHHHHHHHHHHHH
Q 007913 276 AAAVVYWSY-TGFDMVATMAEETKKPSRDIPIGLVGSMCMITAVYCL 321 (585)
Q Consensus 276 ~~~~~~~~~-~G~e~~~~~~~E~k~p~r~~p~ai~~~~~~~~~~y~l 321 (585)
+...++|++ .|+-....++.=.|+ +.|++|........-..+-++
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 788888888 577777777766654 578888766665555544433
|
| >4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A | Back alignment and structure |
|---|
Probab=94.86 E-value=4.2 Score=42.03 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.0
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIF 98 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~ 98 (585)
|-++|.++.+++.+++-+|.|+.
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhe
Confidence 56799999999999988888875
|
| >2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* | Back alignment and structure |
|---|
Probab=89.86 E-value=19 Score=36.91 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=19.6
Q ss_pred ccccChhHHHHHhhcccccccchh
Q 007913 76 QKCLTWWDLTWLCFGSVVGSGIFV 99 (585)
Q Consensus 76 ~r~l~~~~~~~i~~~~~ig~gi~~ 99 (585)
|-+++.++.+++.+++-+|.|+..
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhh
Confidence 457999999999999888888643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 96.78 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=96.78 E-value=0.32 Score=48.47 Aligned_cols=60 Identities=20% Similarity=0.326 Sum_probs=36.4
Q ss_pred ChhHHHHHhhcccccccchhccHHhHhhccChhHHHHHHH----HHHHHHHHHHHHHHhhhhcc
Q 007913 80 TWWDLTWLCFGSVVGSGIFVITGQEAKKHAGPAIVLSYLA----SGLSALLSAFCYTEFAVEIP 139 (585)
Q Consensus 80 ~~~~~~~i~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll----~~~~~~~~a~~~~el~s~~P 139 (585)
+..+.+.-++|..+|.|-+-..+......||..-++.+++ .++..+..=++.++.+++-|
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~ 69 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG 69 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 4566777788888999988888888767577553333333 33333333344455544444
|