Citrus Sinensis ID: 007920
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 585 | ||||||
| 298204800 | 663 | unnamed protein product [Vitis vinifera] | 0.981 | 0.865 | 0.765 | 0.0 | |
| 356507556 | 663 | PREDICTED: DUF246 domain-containing prot | 0.981 | 0.865 | 0.727 | 0.0 | |
| 30678946 | 656 | O-fucosyltransferase-like protein [Arabi | 0.970 | 0.865 | 0.734 | 0.0 | |
| 6006861 | 638 | putative auxin-independent growth promot | 0.970 | 0.890 | 0.734 | 0.0 | |
| 110736066 | 656 | putative auxin-independent growth promot | 0.970 | 0.865 | 0.732 | 0.0 | |
| 297833060 | 656 | hypothetical protein ARALYDRAFT_477634 [ | 0.970 | 0.865 | 0.730 | 0.0 | |
| 224144817 | 652 | predicted protein [Populus trichocarpa] | 0.952 | 0.854 | 0.722 | 0.0 | |
| 449446891 | 658 | PREDICTED: DUF246 domain-containing prot | 0.977 | 0.869 | 0.705 | 0.0 | |
| 356516146 | 663 | PREDICTED: DUF246 domain-containing prot | 0.981 | 0.865 | 0.721 | 0.0 | |
| 357436351 | 669 | DUF246 domain-containing protein [Medica | 0.981 | 0.857 | 0.694 | 0.0 |
| >gi|298204800|emb|CBI25298.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2321), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/581 (76%), Positives = 497/581 (85%), Gaps = 7/581 (1%)
Query: 12 APNEENNGFIYAKVFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSF 71
PNE+NNGFIYAK+ GGFEKIR ICDLV ISRLLNATLVIPEIQ+S RSKGISYKF+SF
Sbjct: 83 VPNEKNNGFIYAKISGGFEKIRPLICDLVAISRLLNATLVIPEIQQSTRSKGISYKFRSF 142
Query: 72 SYLYNEEQFIASLARDVIIVKSLPENLKAARKRNEFPTFKPKVSTSPNYYIQEVLPKLKR 131
SYLYNEEQFIASL DVIIVKSLPE LK+ R+ NEFPTF+PK S+SP++YI+E+LP LK+
Sbjct: 143 SYLYNEEQFIASLKNDVIIVKSLPEKLKSGRRNNEFPTFRPKSSSSPSFYIKEILPNLKK 202
Query: 132 TQVIGLILTDGGCLQSILPPSMSELQRLRCRVAFHALQFRPEIEILGRLMVERLRAWGQP 191
+VIGLILTDGGCLQSILPPSMSE QRLRCRVAF AL FRPEI++LGR MVERLR WGQP
Sbjct: 203 FKVIGLILTDGGCLQSILPPSMSEYQRLRCRVAFQALHFRPEIQVLGRRMVERLRDWGQP 262
Query: 192 FLAYHPGLVRETLAYHGCAELFQDVHTELIQYRRAQMIRQGIVNEELSVDSHLRRDNGSC 251
FLA+HPGLVR+ LAYHGCAELFQDVHTELIQYRRAQ+I+QGIV EELSVDSHL ++ G C
Sbjct: 263 FLAFHPGLVRDALAYHGCAELFQDVHTELIQYRRAQLIKQGIVKEELSVDSHLHKEKGLC 322
Query: 252 PLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTSLCSQKEFSD 311
PLMPEEVGILLRAMGYPPKTIIYLAGSETFGG RVLIPLRAMF+NLVDRTSLCS +E D
Sbjct: 323 PLMPEEVGILLRAMGYPPKTIIYLAGSETFGGQRVLIPLRAMFANLVDRTSLCSSQELLD 382
Query: 312 LIGPETSLPQDLFQPPPAKSEKQLKEEWNKAGPRPRPLSPPPDRPIYLHEKEGWYGWITE 371
L+GPET L D F+ PPAK+E+QLKEEW KAGPRPRPL PPPDRPIY HEKEGWY WITE
Sbjct: 383 LVGPETPLSLDTFKFPPAKTEEQLKEEWKKAGPRPRPLPPPPDRPIYRHEKEGWYDWITE 442
Query: 372 SDTEPSPSAMDLRNQAHRLLWDALDYIVSVEADAFFPGFHNDGSKWPDFASLVMGQRLYE 431
++TEP PS MDLR +AHRLLWDALDYIVSVEADAFFPGF+NDG WPDF+SLVMGQRLYE
Sbjct: 443 TETEPDPSPMDLRMEAHRLLWDALDYIVSVEADAFFPGFNNDGIGWPDFSSLVMGQRLYE 502
Query: 432 SAASRTYRPDRKLLAELFNITRENMYHPKHNWTVSVKEHLNRSLDENGFIRQSLFSKPVS 491
+ +SRTYRPDRK+LA+LFNITRENMYHPKHNWT+SV+E LN+S+ E G IR+SL SKP S
Sbjct: 503 NPSSRTYRPDRKILADLFNITRENMYHPKHNWTLSVQELLNKSMGEEGLIRESLLSKPNS 562
Query: 492 FLSHPLPECSCRTSSATVPNELKGKDGRFLYGGEDECPKWIQRGQEAGSLELAG---GKT 548
FLSHPLPECSCR S +PN++KG DGR LYGGED CP+W+QRG E ++ K
Sbjct: 563 FLSHPLPECSCRIPSDEIPNQVKGNDGRLLYGGEDNCPEWMQRGMEMVKVDPGATERSKA 622
Query: 549 DESESSDY----DELPESDDGDSKNGTTLVFDRDEEWDPND 585
DE E DY DE PE+DD TTL FD+D+E DPND
Sbjct: 623 DEVELPDYETDLDEQPENDDTSGNTNTTLPFDQDDEMDPND 663
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356507556|ref|XP_003522530.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|30678946|ref|NP_187031.2| O-fucosyltransferase-like protein [Arabidopsis thaliana] gi|332640475|gb|AEE73996.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|6006861|gb|AAF00637.1|AC009540_14 putative auxin-independent growth promoter protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|110736066|dbj|BAF00006.1| putative auxin-independent growth promoter protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297833060|ref|XP_002884412.1| hypothetical protein ARALYDRAFT_477634 [Arabidopsis lyrata subsp. lyrata] gi|297330252|gb|EFH60671.1| hypothetical protein ARALYDRAFT_477634 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|224144817|ref|XP_002325426.1| predicted protein [Populus trichocarpa] gi|222862301|gb|EEE99807.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449446891|ref|XP_004141204.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] gi|449489598|ref|XP_004158360.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356516146|ref|XP_003526757.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|357436351|ref|XP_003588451.1| DUF246 domain-containing protein [Medicago truncatula] gi|355477499|gb|AES58702.1| DUF246 domain-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 585 | ||||||
| TAIR|locus:2079404 | 656 | EDA30 "embryo sac development | 0.970 | 0.865 | 0.715 | 7.2e-226 | |
| TAIR|locus:2102886 | 677 | AT3G30300 [Arabidopsis thalian | 0.923 | 0.797 | 0.513 | 3.4e-141 | |
| TAIR|locus:2174754 | 522 | AT5G64600 [Arabidopsis thalian | 0.487 | 0.545 | 0.346 | 1.3e-49 | |
| TAIR|locus:2010657 | 519 | AT1G04910 [Arabidopsis thalian | 0.511 | 0.576 | 0.327 | 3.3e-49 | |
| TAIR|locus:2009467 | 565 | AT1G22460 [Arabidopsis thalian | 0.490 | 0.507 | 0.324 | 3.3e-47 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.490 | 0.522 | 0.345 | 4.2e-47 | |
| TAIR|locus:2076552 | 512 | AT3G02250 [Arabidopsis thalian | 0.482 | 0.550 | 0.354 | 1.6e-45 | |
| TAIR|locus:2143181 | 508 | AT5G15740 [Arabidopsis thalian | 0.471 | 0.543 | 0.365 | 5.3e-45 | |
| TAIR|locus:2080285 | 638 | AT3G54100 [Arabidopsis thalian | 0.468 | 0.429 | 0.347 | 7.5e-45 | |
| TAIR|locus:2014869 | 499 | AT1G14020 [Arabidopsis thalian | 0.473 | 0.555 | 0.356 | 3.2e-43 |
| TAIR|locus:2079404 EDA30 "embryo sac development arrest 30" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2180 (772.5 bits), Expect = 7.2e-226, P = 7.2e-226
Identities = 414/579 (71%), Positives = 477/579 (82%)
Query: 12 APNEENNGFIYAKVFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSF 71
AP+ +NNGFIYAK+FGGF+KIRSSICDLVTISRLLNATLVIPE+QESLRSKGIS KFKSF
Sbjct: 84 APSSKNNGFIYAKIFGGFDKIRSSICDLVTISRLLNATLVIPELQESLRSKGISNKFKSF 143
Query: 72 SYLYNEEQFIASLARDVIIVKSLPENLKAARKRNEFPTFKPKVSTSPNYYIQEVLPKLKR 131
SYLY+EEQFIA L DVI++K+LPE+LKAARKRNEFP FKPK S SP +Y+++VLPKLK+
Sbjct: 144 SYLYDEEQFIAFLKNDVIVMKTLPESLKAARKRNEFPLFKPKNSASPKFYLEDVLPKLKK 203
Query: 132 TQVIGLILTDGGCLQSILPPSMSELQRLRCRVAFHALQFRPEIEILGRLMVERLRAWGQP 191
VIGLI++DGGCLQS LP SM ELQRLRCRVAFHALQ RPEI++L + MV+RLR GQP
Sbjct: 204 ANVIGLIVSDGGCLQSALPASMPELQRLRCRVAFHALQLRPEIQVLAKEMVDRLRKSGQP 263
Query: 192 FLAYHPGLVRETLAYHGCAELFQDVHTELIQYRRAQMIRQGIVNEELSVDSHLRRDNGSC 251
FLAYHPGLVRE LAYHGCAELFQD+H+ELIQYRRAQMI+Q + EEL VDS LRRDNG C
Sbjct: 264 FLAYHPGLVREKLAYHGCAELFQDIHSELIQYRRAQMIKQRFILEELIVDSRLRRDNGLC 323
Query: 252 PLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTSLCSQKEFSD 311
PLMPEEVGILL+A+GY K IIYLAGSE FGG RVLIPLRAMF NLVDRTSLCS +E S+
Sbjct: 324 PLMPEEVGILLKALGYSQKAIIYLAGSEIFGGQRVLIPLRAMFPNLVDRTSLCSTEELSE 383
Query: 312 LIGPETSLPQDLFQPPPAKSEKQLKEEWNKAGXXXXXXXXXXXXXIYLHEKEGWYGWITE 371
L+GPET LP++ ++ PP KS+KQLKEEWNKAG IY HEKEGWYGW+TE
Sbjct: 384 LVGPETPLPENTYKMPPRKSDKQLKEEWNKAGPRPRPLPPPPDRPIYQHEKEGWYGWLTE 443
Query: 372 SDTEPSPSAMDLRNQAHRLLWDALDYIVSVEADAFFPGFHNDGSKWPDFASLVMGQRLYE 431
+DTEPSPS MDLRNQAHRLLWDALD+ VSVEAD FFPGF+NDGS WPDF+SLVMGQRLYE
Sbjct: 444 NDTEPSPSPMDLRNQAHRLLWDALDFAVSVEADVFFPGFNNDGSGWPDFSSLVMGQRLYE 503
Query: 432 SAASRTYRPDRKLLAELFNITRENMYHPKHNWTVSVKEHLNRSLDENGFIRQSLFSKPVS 491
+SRTYR DRK++ ELFNITRE+MYHP NWT+ V++HLN SL E+G IRQS+ SKP S
Sbjct: 504 RPSSRTYRLDRKVIQELFNITREDMYHPNRNWTLRVRKHLNSSLGESGLIRQSMLSKPRS 563
Query: 492 FLSHPLPECSCRTSSATVPNELKGKDGRFLYGGEDECPKWIQRGQEAGSLELAGGKTDES 551
FLSHPLPECSCRTS+ +++ DGRFLYGGEDECPKWI+ AG + KTD+
Sbjct: 564 FLSHPLPECSCRTSALEDSRQIQSDDGRFLYGGEDECPKWIK---SAG---VEKSKTDDG 617
Query: 552 ESSDYD-----ELPESDDGDSKNGTTLVFDRDEEWDPND 585
+ DYD E E+++ +K+ FD+DEEWDPND
Sbjct: 618 DQPDYDHDLLAEQSETEEEFAKSKVASAFDQDEEWDPND 656
|
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| TAIR|locus:2102886 AT3G30300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2010657 AT1G04910 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00025295001 | SubName- Full=Chromosome chr9 scaffold_33, whole genome shotgun sequence; (656 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 585 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-96 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 2e-84 | |
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 4e-08 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 296 bits (759), Expect = 1e-96
Identities = 114/291 (39%), Positives = 154/291 (52%), Gaps = 48/291 (16%)
Query: 20 FIYAKVFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISYKFKSFSYLYNEEQ 79
++ GG + RS ICD V ++RLLNATLV+PE+ + F +Y+ +
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELD----KNSVWGDSSKFGDIYDVDH 56
Query: 80 FIASLARDVIIVKSLPENLKAARKRNEFPTFKPKVSTSPNYYIQEVLPKLKRTQVIGLIL 139
FI SL DV +VK LPE L + + E + +SP+YY++EVLP LK+ VI +
Sbjct: 57 FIKSLKDDVRVVKKLPEELASKKP--EITVKRVPSRSSPSYYLEEVLPLLKKHGVI-RLA 113
Query: 140 TDGGCLQSILPPSMSELQRLRCRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGL 199
L + L P E+QRLRCRV FHAL+F PEIE LG +V+RLR G PFLA H
Sbjct: 114 PFDSRLANDLLPP--EIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRF 171
Query: 200 VRETLAYHGCAELFQDVHTELIQYRRAQMIRQGIVNEELSVDSHLRRDNGSCPLMPEEVG 259
++ LA+ GC G CPL PEEVG
Sbjct: 172 EKDMLAFSGC---------------------------------------GKCPLTPEEVG 192
Query: 260 ILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTSLCSQKEFS 310
+LLRA+G+P T IYLA E +GG R L PLR++F NL + +L + +E +
Sbjct: 193 LLLRALGFPRSTRIYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELA 243
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 585 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 95.77 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 84.14 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=424.12 Aligned_cols=304 Identities=29% Similarity=0.454 Sum_probs=203.3
Q ss_pred EcCChhhHHHHHHHHHHHHHHhcceEeeccccccccccCCCC--CCCCCCccccHHHHHHHccccceeeccCchhHHhhc
Q 007920 25 VFGGFEKIRSSICDLVTISRLLNATLVIPEIQESLRSKGISY--KFKSFSYLYNEEQFIASLARDVIIVKSLPENLKAAR 102 (585)
Q Consensus 25 anGGLNQqR~~IcDaVaVARiLNATLVIP~Ld~~s~~~~d~s--d~s~F~DIFD~dhFI~sL~~DVrIVk~LP~~l~~~~ 102 (585)
+.||+||||.+|++||++|++||+|||||.+..... |++.+ ..-.|+++||++||++.++.+|.+++.+|..+....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~-~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~ 84 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYH-WKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVF 84 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESS-SS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCcccccc-ccccccccccChhhhccHHHHHHHhhCceehheeccchhcccc
Confidence 789999999999999999999999999999999874 44432 122499999999999999999999999987776542
Q ss_pred cc---------------------------CCCCccCCCC-CCChhHHHHhhhhhhhcc------ceEEEeecCCcccccC
Q 007920 103 KR---------------------------NEFPTFKPKV-STSPNYYIQEVLPKLKRT------QVIGLILTDGGCLQSI 148 (585)
Q Consensus 103 ~~---------------------------~~i~~~~vp~-~ss~~yY~~~VlP~L~k~------~VI~l~~~d~rla~~~ 148 (585)
.. .....+.... ++.+.+|+++++|++.++ +|+.|..+...+..+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 164 (351)
T PF10250_consen 85 RLQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNY 164 (351)
T ss_dssp -EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--G
T ss_pred chhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhcc
Confidence 21 1112233333 678889999999999987 9999999988877765
Q ss_pred CCCChhHHhhhhhhccccccccchHHHHHHHHHHHHHHhcCCCeEEeccchhhhhhhhhccccccchhHHHHHHHHHHHh
Q 007920 149 LPPSMSELQRLRCRVAFHALQFRPEIEILGRLMVERLRAWGQPFLAYHPGLVRETLAYHGCAELFQDVHTELIQYRRAQM 228 (585)
Q Consensus 149 LP~~~~eiQrLRCrvnf~ALrF~p~Ie~LG~~LV~RLR~~g~pyIALHLRfEkDMLAfSgC~~~~~~~~~el~~~rr~~~ 228 (585)
+++ ++|| +|+|+++|+++|+++|++|+..+++|||+|||+|+|| +++|.+.. ...+++.-|.+
T Consensus 165 ~~~---~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~~- 227 (351)
T PF10250_consen 165 LDR---DLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRCW- 227 (351)
T ss_dssp GGG---GGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHHH-
T ss_pred cCc---cceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHhh-
Confidence 553 6777 9999999999999999999965679999999999999 99999743 44444443332
Q ss_pred hhccccccccccCchhhccCCCCCCCHHHHHHHHHhcCCCCCceEEEecccccCCccchhhHHHhccCccccccCCChhh
Q 007920 229 IRQGIVNEELSVDSHLRRDNGSCPLMPEEVGILLRAMGYPPKTIIYLAGSETFGGHRVLIPLRAMFSNLVDRTSLCSQKE 308 (585)
Q Consensus 229 ~k~~~~k~~~~i~~~~~R~~G~CPLTPeEVgl~LrALGf~~~T~IYlAaGeIyGG~~~m~pL~~~FPnl~~k~tLat~~E 308 (585)
++..+.+...+..|.||++|++++.+++++|+.+.|.||||++++|||.+.|.+|+++||++++|++|.+.+|
T Consensus 228 -------~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 300 (351)
T PF10250_consen 228 -------GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEE 300 (351)
T ss_dssp --------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--
T ss_pred -------ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHH
Confidence 2335667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCCCCCCCCCCcchhHHHHHHHhhcCCCCCCCCCCCCCccccccccccccccccCCCCCCCchhhhhhhhh
Q 007920 309 FSDLIGPETSLPQDLFQPPPAKSEKQLKEEWNKAGPRPRPLSPPPDRPIYLHEKEGWYGWITESDTEPSPSAMDLRNQAH 388 (585)
Q Consensus 309 L~~f~g~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~rp~~~~~p~~rp~y~~~~e~~~~~~~~~~~e~~~s~~~~r~~~h 388 (585)
+++|.+
T Consensus 301 ~~~~~~-------------------------------------------------------------------------- 306 (351)
T PF10250_consen 301 LEPLND-------------------------------------------------------------------------- 306 (351)
T ss_dssp S-------------------------------------------------------------------------------
T ss_pred hhhccc--------------------------------------------------------------------------
Confidence 999863
Q ss_pred hhhhhhhheeeeeccceeccccCCCCCCcCchHHhhhhccccccCC
Q 007920 389 RLLWDALDYIVSVEADAFFPGFHNDGSKWPDFASLVMGQRLYESAA 434 (585)
Q Consensus 389 ~l~~AALDYiV~l~SDvFvpt~~~~G~g~~Nma~~v~GhR~Y~g~~ 434 (585)
.++|+|||+||+.||+||.+. || .|+..|+++|.|.|..
T Consensus 307 -~~~a~vD~~i~~~s~~Figt~---~S---tfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 307 -DQLAMVDQEICSRSDVFIGTC---GS---TFSSNIARERHYRGKP 345 (351)
T ss_dssp -S--HHHHHHHHHHSSEEEE-T---T----HHHHHHHHHHHHSSSS
T ss_pred -cchhHHHHHHHhcCCEEEecC---cc---hhHHHhhcccCcCCCC
Confidence 235999999999999999874 43 8999999999999974
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 585 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 3e-07
Identities = 84/538 (15%), Positives = 148/538 (27%), Gaps = 181/538 (33%)
Query: 38 DLVTISRLLNATLVIPEIQESLRSKG--ISYKF--KSFSYLYNEEQFIASLARDVIIVKS 93
++ ++ TL + L SK + KF + Y F+ S + S
Sbjct: 53 HIIMSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQPS 106
Query: 94 LPENL-KAARKR--NEFPTFKPKVSTSPNYY--IQEVLPKLKRTQVIGLILTDG--GCLQ 146
+ + R R N+ F + Y +++ L +L+ + + + DG G +
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGVLGSGK 163
Query: 147 SILPPSMSELQRLRCRVAFH------ALQFRPE--IEILGRLMVERLRAWGQPFLAYHPG 198
+ + + +++C++ F PE +E+L +L
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL------------------ 205
Query: 199 LVRETLAYHGCAELFQDVHTELIQYRRAQMIRQGIVNEELSVDSHLRRDNGSCPLMPEEV 258
++ + + + I+ I S+ + LRR
Sbjct: 206 ----------LYQIDPNWTSRS---DHSSNIKLRIH----SIQAELRR------------ 236
Query: 259 GILLRAMGYP-----------PKTIIYLAGSETFGGH-RVLIPLRAMFSNLVD-----RT 301
LL++ Y K F ++L+ R F + D T
Sbjct: 237 --LLKSKPYENCLLVLLNVQNAKAW------NAFNLSCKILLTTR--FKQVTDFLSAATT 286
Query: 302 SLCSQKEFSDLIGPETSLPQDLFQPPPAK----SEKQLKEEWNKAGPR-----PRPLSPP 352
+ S S + P+ L K + L E PR +
Sbjct: 287 THISLDHHSMTLTPDEVK--SLL----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 353 PDRPIYLHEKEGWYGW----------ITESDTEP-SPSAMDLRNQAHRL----------- 390
W W I ES P+ + R RL
Sbjct: 341 LAT---------WDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPT 389
Query: 391 -----LWDALDYIVSVEADAFFPGFHNDGSKWPDFASLVMGQRLYESAASRTYR-PDRKL 444
+W + + H SLV Q T P L
Sbjct: 390 ILLSLIWFDVIKS---DVMVVVNKLHK--------YSLVEKQP-----KESTISIPSIYL 433
Query: 445 LAELFNITRENMYHPKHNWTVSVKEHLN--RSLDENGFIRQSLFSKPVSFLSHPLPEC 500
+ EN Y H S+ +H N ++ D + I L S + H L
Sbjct: 434 ---ELKVKLENEYA-LHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 585 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.21 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 98.42 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 94.47 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=121.19 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=52.3
Q ss_pred CCCCceEEEEEc-C-ChhhHHHHHHHHHHHHHHhcce----EeeccccccccccCCC--CCCCCCCccccHHHHHHHccc
Q 007920 15 EENNGFIYAKVF-G-GFEKIRSSICDLVTISRLLNAT----LVIPEIQESLRSKGIS--YKFKSFSYLYNEEQFIASLAR 86 (585)
Q Consensus 15 ~~snGYL~V~an-G-GLNQqR~~IcDaVaVARiLNAT----LVIP~Ld~~s~~~~d~--sd~s~F~DIFD~dhFI~sL~~ 86 (585)
...++||+-..| | |+|.||...-.|.++|+.||.| ||||-...-.-|.... +..-.|++.||++++ +.
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L----~~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSL----NK 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHH----HT
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHH----Hh
Confidence 467899998664 4 8999999999999999999999 9999664211022221 112359999999864 44
Q ss_pred cceee
Q 007920 87 DVIIV 91 (585)
Q Consensus 87 DVrIV 91 (585)
.|+||
T Consensus 95 ~vpVI 99 (408)
T 4ap5_A 95 NIPVI 99 (408)
T ss_dssp TSCEE
T ss_pred hCCee
Confidence 55555
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00