Citrus Sinensis ID: 007932

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
Protein Sequence
MEAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEMETKALDTSLGLHA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHcEEEEEEEEcccccHHcHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHccccccccHHHHHccccHHHHcccccccccccccEHHccEEEEccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meakgftqdgtvdlqgrpvlssktgkwkACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKfmkptctngicsktstsqiAFFYSSLYIIAIGaggtkpnistfgadqfddfnpyernlkVSFFNWWMFSSFIGALCATLGLVYIQEnlgwglgygiptaGLLFSLVIFYIgspiyrhkirktkspardlirVPIAAFrnrkiqlpdnpselhefdtqdyirsgkrqvvhspafrclDKAAikhgnggdskppctvtqveGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQgttlnrslspsfripaaslgSFVTLSMLlsvpmydryfvpfmrrrtgnprgiTMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQhisgpkqivpMSIFWLLPQYVLLGVADVFNAIGLLeffydqspedmqslgttfftsgigvgnFLNSFLVTLVDKvtgrngekgwigdnlndchlDYYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEMETKALDTSLGLHA
Flexible Loop (DISEMBL)
meakgftqdgtvdlqgrpvlssktgkwKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYrhkirktkspardlirvpiaafrnrkiqlpdnpselhefDTQDYIRSGKRQVVHSPAFRCLDKAAIkhgnggdskppCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGrngekgwigdnLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEMETkaldtslglha
Low Complexity Region (SEG)
MEAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEMETKALDTSLGLHA
Disordered region (IsUnstruct)
*******************LSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQL*********FDTQDYIRSGKRQVVHSPAFRCLDKAAIKHG*******PCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCV***************
Disordered Region (DISOPRED)
*****FTQDGTVDLQ**P******GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTC*****SKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFN***RNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSE********************PAFRCLDKAAIKH***********VTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHIS*PKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYV****************************
Disordered Region (DISEMBL)
********DGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEMETKAL********
Disordered Region (DISPRO)
********DGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDY*RSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYKRE************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEMETKALDTSLGLHA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	584	2.2.26 [Sep-21-2011]
Q8VZR7	583	Probable peptide/nitrate	yes	no	0.981	0.982	0.743	0.0
Q9FNL7	582	Peptide transporter PTR3-	no	no	0.962	0.965	0.490	1e-156
Q9FNL8	586	Peptide transporter PTR3-	no	no	0.909	0.906	0.489	1e-148
Q9M390	570	Peptide transporter PTR1	no	no	0.953	0.977	0.438	1e-141
P46032	585	Peptide transporter PTR2	no	no	0.957	0.955	0.433	1e-140
Q9LFB8	570	Peptide transporter PTR5	no	no	0.946	0.970	0.430	1e-140
Q93Z20	590	Probable peptide/nitrate	no	no	0.928	0.918	0.439	1e-137
Q84WG0	545	Probable peptide/nitrate	no	no	0.893	0.957	0.4	1e-120
Q9M331	602	Probable peptide/nitrate	no	no	0.929	0.901	0.387	1e-117
Q0WP01	557	Probable peptide/nitrate	no	no	0.909	0.953	0.395	1e-114

>sp|Q8VZR7|PTR30_ARATH Probable peptide/nitrate transporter At2g40460 OS=Arabidopsis thaliana GN=At2g40460 PE=2 SV=2

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/580 (74%), Positives = 502/580 (86%), Gaps = 7/580 (1%)

Query: 3   AKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED 62
           AK +TQDGTVDLQGRPVL+SKTG+W+AC+FL+GYEAFERMAFYGI SNLVNYLT +LHED
Sbjct: 4   AKVYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHED 63

Query: 63  TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMK 122
           T+SSVRNVNNWSG VWITP+ GAYIAD+YIGRFWTFT SSLIYVLGMILLTMA ++K ++
Sbjct: 64  TISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLR 123

Query: 123 PTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF 182
           PTC NG+C+K S+ Q+ FFY SLY IAIGAGGTKPNISTFGADQFD ++  E+  KVSFF
Sbjct: 124 PTCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSFF 183

Query: 183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTK 242
           NWWMFSSF+GAL ATLGLVYIQENLGWGLGYGIPT GLL SLV+FYIG+P YRHK+ KT 
Sbjct: 184 NWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKTD 243

Query: 243 SPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKH 302
           + A+DL++VPIAAF+NRK+Q PD+  EL+E D+  Y  +GK QV H+P FR LDKAAIK 
Sbjct: 244 NLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKT 303

Query: 303 GNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSF 362
                S+ PCTVT+VE  K VLG+  IWLVTLIPST+WAQ+NTLFVKQGTTL+R +  +F
Sbjct: 304 ----SSRVPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNF 359

Query: 363 RIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA 422
           +IPAASLGSFVTLSMLLSVPMYD+ FVPFMR++TGNPRGIT+LQRLGVGF IQ++AIAIA
Sbjct: 360 QIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIA 419

Query: 423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDM 482
            AVEV+RM VI+  HI+ P Q+VPMSIFWLLPQY LLG+ DVFNAIGLLEFFYDQSPE+M
Sbjct: 420 SAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 479

Query: 483 QSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISI 542
           QSLGTTFFTSGIG+GNFLNSFLVT++DK+T + G K WIG+NLND  LDYYYGFL+VISI
Sbjct: 480 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISI 539

Query: 543 LNLGAFFWASSRYVYKR--ETKEVN-EGCVEMETKALDTS 579
           +N+G F WA+S+YVYK   +TKE +  GCV+ME KALDTS
Sbjct: 540 VNMGLFVWAASKYVYKSDDDTKEFSGGGCVQMEAKALDTS 579

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL7|PTR3_ARATH Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1

 Score =  551 bits (1421), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 282/575 (49%), Positives = 389/575 (67%), Gaps = 13/575 (2%)

Query: 6   FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS 65
           +T+DGTVDLQG PV  S  G+WKAC+F+V YE FERMA+YGI SNL  Y+T++LH+ TV 
Sbjct: 10  YTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVK 69

Query: 66  SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKP-- 123
           S  NV NW G  W+TP+LGAY+ D  +GR+ TF +S  IY  GM++LT++ ++  +KP  
Sbjct: 70  SSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPE 129

Query: 124 --TCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF 181
             T     C K S  Q+A F+ +LY +AIG GGTKPNIST GADQFD F+P E+  K+SF
Sbjct: 130 CSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSF 189

Query: 182 FNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT 241
           FNWWMFS F G L A   LVY+Q+N+GW LGYG+PT GL  S+ IF +G+P YRHK+  T
Sbjct: 190 FNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKL-PT 248

Query: 242 KSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIK 301
            SP   + RV +A+FR     +  + +  HE  + +Y R G   +  +P+ R LD+A++K
Sbjct: 249 GSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASLK 308

Query: 302 HGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPS 361
            G        CT T+VE TK +L M  +  +T +PS + AQINTLFVKQGTTL+R ++ S
Sbjct: 309 TGTNHKWN-LCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGS 367

Query: 362 FRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAI 421
           F IP ASL  FVTLSML+S+ +YDR FV   R+ TGNPRGIT+LQR+G+G +  ++ + +
Sbjct: 368 FSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIV 427

Query: 422 AYAVEVRRMHVIR---VQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS 478
           A   E  R+ V     + H +G K  +P++IF LLPQ+VL+G+AD F  +  LEFFYDQ+
Sbjct: 428 ASVTERYRLKVAADHGLIHQTGVK--LPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQA 485

Query: 479 PEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLM 538
           PE M+SLGT++ T+ + +GNF++SFL++ V ++T + G +GWI +NLN+  LDYYY F  
Sbjct: 486 PESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNNLNESRLDYYYLFFA 544

Query: 539 VISILNLGAFFWASSRYVYKRE-TKEVNEGCVEME 572
           V++++N   F      YVY+ E T  V+   VEM+
Sbjct: 545 VLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMK 579

Peptide transporter involved in stress tolerance in seeds during germination and in defense against virulent bacterial pathogens.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL8|PTR4_ARATH Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1

 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/539 (48%), Positives = 370/539 (68%), Gaps = 8/539 (1%)

Query: 6   FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS 65
           +T+DGTVDL+G  V  S+TG+WKAC+F+V YE FERMA+YGI SNLV Y+T++LH+ TV 
Sbjct: 10  YTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVK 69

Query: 66  SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMK-PT 124
           S  NV NW G  W+TP+LGAY+AD + GR+ TF +SS IY+LGM LLT++ SL  +K P 
Sbjct: 70  SSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPK 129

Query: 125 CTNG---ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF 181
           C+      C K S  Q+A F+ +LY +AIG GGTKPNIST GADQFD+F+P ++  K SF
Sbjct: 130 CSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSF 189

Query: 182 FNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT 241
           FNWWMFS F G   AT  LVY+Q+N+GW +GYG+ T GL FS+ IF +G+ +YRHK+   
Sbjct: 190 FNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKL-PM 248

Query: 242 KSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIK 301
            SP   + RV +A+ R  +  +  + +  +E    +Y       +  + + R L++A++K
Sbjct: 249 GSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEYASKRAFPIHSTSSLRFLNRASLK 308

Query: 302 HGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPS 361
            G+    +  CT+T+VE TK +L M  +  VT +PS + AQI TLF+KQGTTL+R L+ +
Sbjct: 309 TGSTHKWR-LCTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLTNN 367

Query: 362 FRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAI 421
           F IP ASL  F T SML+S+ +YDR FV FMR+ TGNPRGIT+LQR+G+G ++ ++ + I
Sbjct: 368 FSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIMII 427

Query: 422 AYAVEVRRMHVIRVQHISGPKQI-VPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPE 480
           A   E  R+ V     ++    + +P+SIF LLPQYVL+G+AD F  I  LEFFYDQ+PE
Sbjct: 428 ASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQAPE 487

Query: 481 DMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMV 539
            M+SLGT++ ++ + VG F++S L++ V ++T + G +GWI +NLN+  LD YY F  V
Sbjct: 488 SMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNNLNESRLDNYYMFFAV 545

Peptide transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1

 Score =  501 bits (1290), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/566 (43%), Positives = 370/566 (65%), Gaps = 9/566 (1%)

Query: 1   MEAKG-FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL 59
           ME K  +TQDGTVD+   P    KTG WKAC F++G E  ER+A+YG+ +NLVNYL S+L
Sbjct: 1   MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query: 60  HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK 119
           ++   ++  NV NWSG  +ITPL+GA+IAD Y+GR+WT      IYV GM LLT++AS+ 
Sbjct: 61  NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query: 120 FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV 179
            +KP   N      ++SQ A F+ +LY+IA+G GG KP +S+FGADQFD+ +  E+  K 
Sbjct: 121 GLKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKS 180

Query: 180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIR 239
           SFFNW+ FS  +GAL A   LV+IQ N+GWG G+G+PT  ++ ++  F+ GS  YR + R
Sbjct: 181 SFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ-R 239

Query: 240 KTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAA 299
              SP   + +V +AAFR   +++P++ S L E    +    G R++VH+   +  DKAA
Sbjct: 240 PGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAA 299

Query: 300 IKHGN----GGDSKP--PCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTT 353
           ++  +     G+  P   C+VTQVE  K ++ +  +W   ++ +T+++Q++T+FV QG T
Sbjct: 300 VESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNT 359

Query: 354 LNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFV 413
           +++ +  +F IP+ASL  F T+S+L   P+YD++ +P  R+ T N RG T LQR+G+G V
Sbjct: 360 MDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLV 419

Query: 414 IQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEF 473
           + + A+  A  +EV R+  ++  +    KQI  MSIFW +PQY+L+G A+VF  IG LEF
Sbjct: 420 VSIFAMITAGVLEVVRLDYVKTHNAYDQKQI-HMSIFWQIPQYLLIGCAEVFTFIGQLEF 478

Query: 474 FYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYY 533
           FYDQ+P+ M+SL +    + + +GN+L++ LVT+V K+T +NG+ GWI DNLN  HLDY+
Sbjct: 479 FYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYF 538

Query: 534 YGFLMVISILNLGAFFWASSRYVYKR 559
           +  L  +S LN   + W S RY YK+
Sbjct: 539 FYLLATLSFLNFLVYLWISKRYKYKK 564

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P46032|PTR2_ARATH Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1

 Score =  500 bits (1288), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/568 (43%), Positives = 371/568 (65%), Gaps = 9/568 (1%)

Query: 2   EAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE 61
           E K + +DG+VD  G P L  KTG WKAC F++G E  ER+A+YGI  NL+ YLT++LH+
Sbjct: 20  EVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQ 79

Query: 62  DTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFM 121
             VS+  NV  W G  ++TPL+GA +AD Y GR+WT    S IY +GM  LT++AS+  +
Sbjct: 80  GNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPAL 139

Query: 122 KPT-CTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
           KP  C    C   + +Q A F+  LY+IA+G GG KP +S+FGADQFDD +  ER  K S
Sbjct: 140 KPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKAS 199

Query: 181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
           FFNW+ FS  IGAL ++  LV+IQEN GWGLG+GIPT  +  ++  F+ G+P+YR + + 
Sbjct: 200 FFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQ-KP 258

Query: 241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI 300
             SP   + +V +A+FR   +++P++ + L+E   ++   +G R++ H+   + LDKAA+
Sbjct: 259 GGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAV 318

Query: 301 ------KHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTL 354
                 K G+  +S   CTVTQVE  K+++ M  IW   +I S ++AQ++T+FV+QG  +
Sbjct: 319 ISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAM 378

Query: 355 NRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVI 414
           N  +  SF++P A+LG+F T S+++ VP+YDR+ VP  R+ TG  +G T +QR+G+G  +
Sbjct: 379 NCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFV 437

Query: 415 QVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFF 474
            V+ +A A  VE+ R+H+     +      VP+S+ W +PQY +LG A+VF  IG LEFF
Sbjct: 438 SVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFF 497

Query: 475 YDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYY 534
           YDQSP+ M+SL +        +GN+L+S ++TLV   T RNG++GWI DNLN  HLDY++
Sbjct: 498 YDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFF 557

Query: 535 GFLMVISILNLGAFFWASSRYVYKRETK 562
             L  +S++N+  +F++++RY  K+ + 
Sbjct: 558 WLLAGLSLVNMAVYFFSAARYKQKKASS 585

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity, low capacity transporter. Can also transport histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFB8|PTR5_ARATH Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1

 Score =  498 bits (1282), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 242/562 (43%), Positives = 371/562 (66%), Gaps = 9/562 (1%)

Query: 6   FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS 65
           +T+DGT+D+  +P   +KTG WKAC F++G E  ER+A+YG+ +NL+NYL  Q++ + VS
Sbjct: 8   YTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVS 67

Query: 66  SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTC 125
           + ++V+NWSG  + TPL+GA+IAD Y+GR+WT     +IY+ GM LLT++AS+  + PTC
Sbjct: 68  ASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTC 127

Query: 126 TNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW 185
           +   C  T+  Q A  + +LY+IA+G GG KP +S+FGADQFDD +  E+  K SFFNW+
Sbjct: 128 SGETCHATA-GQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWF 186

Query: 186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPA 245
            F   +GA+ A+  LV+IQ N+GWG G G+PT  +  ++V F+ GS  YR + +   SP 
Sbjct: 187 YFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQ-KPGGSPL 245

Query: 246 RDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI--KHG 303
             +++V +A+ R  K+++P++ S L+E    +    G R++ H+      DKAA+  +  
Sbjct: 246 TRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESD 305

Query: 304 NGGDSKPP----CTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS 359
           N G +K      CTVTQVE  K ++ +  IW   ++ +++++Q+ T+FV QG TL++ + 
Sbjct: 306 NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMG 365

Query: 360 PSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI 419
           P+F+IP+ASL  F TLS+L   P+YD+  VPF R+ TG+ RG T LQR+G+G VI + ++
Sbjct: 366 PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSM 425

Query: 420 AIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP 479
             A  +EV R++ ++  ++   ++ +PM+IFW +PQY L+G A+VF  IG LEFFYDQ+P
Sbjct: 426 VSAGILEVARLNYVQTHNLYN-EETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAP 484

Query: 480 EDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMV 539
           + M+SL +    + I  GN+L++FLVTLV KVT   G  GWI  NLN+ HLDY++  L  
Sbjct: 485 DAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAG 544

Query: 540 ISILNLGAFFWASSRYVYKRET 561
           +S LN   + W +  Y YK+ T
Sbjct: 545 LSFLNFLVYLWIAKWYTYKKTT 566

Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter. Involved in the uptake of peptides during pollen germination and tube growth.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z20|PTR17_ARATH Probable peptide/nitrate transporter At1g62200 OS=Arabidopsis thaliana GN=At1g62200 PE=2 SV=1

 Score =  488 bits (1256), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/562 (43%), Positives = 369/562 (65%), Gaps = 20/562 (3%)

Query: 8   QDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSV 67
           +DG++D+ G P    KTG WKAC F++G E  ER+A+YGI  NL+ Y TS+LHE  VS+ 
Sbjct: 37  EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query: 68  RNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKP---- 123
            +V  W G  +ITPL+GA IAD+Y GR+WT    S IY +GM LLT++ASL  +KP    
Sbjct: 97  SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query: 124 TCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN 183
                +CS  +T Q A F++ LY+IA+G GG KP +S+FGADQFDD +P ER  K SFFN
Sbjct: 157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query: 184 WWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKS 243
           W+ FS  IG+  ++  LV++QEN+GWGLG+ IPT  +  S+  F+IG+P+YR + +   S
Sbjct: 217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQ-KPGGS 275

Query: 244 PARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI--- 300
           P   + +V +AA+R  K+ LP++ S L+E   ++ + +G R++ H+  ++ LDKAA+   
Sbjct: 276 PITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISE 335

Query: 301 -KHGNGGDSKP--PCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRS 357
            +  +G  S P   CTVTQVE  K ++ M  IW   ++ S +++QI+TLFV+QG ++NR 
Sbjct: 336 YESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRI 395

Query: 358 LSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVM 417
           +  SF IP AS G F TL +L+S+P+YDR+ VPF+RR TG P+G+T LQR+G+G  + V+
Sbjct: 396 IR-SFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVL 454

Query: 418 AIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQ 477
           +IA A  VE  R+ +         +  V MSIFW +PQY+L+G+A+VF  IG +EFFYD+
Sbjct: 455 SIAAAAIVETVRLQL--------AQDFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDE 506

Query: 478 SPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFL 537
           SP+ M+S+ +        VG++L+S ++TLV   T   G+ GW+ D+LN  HLDY++  L
Sbjct: 507 SPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLL 566

Query: 538 MVISILNLGAFFWASSRYVYKR 559
           + + ++N+  +     ++  K+
Sbjct: 567 VSLGLVNIPVYALICVKHTKKK 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WG0|PTR26_ARATH Probable peptide/nitrate transporter At2g02020 OS=Arabidopsis thaliana GN=At2g02020 PE=2 SV=2

 Score =  431 bits (1109), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/560 (40%), Positives = 338/560 (60%), Gaps = 38/560 (6%)

Query: 2   EAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE 61
           E K + +DG++D+ G P L   TG WKAC F+   E  ER+A+YGI  NL+ Y T++LHE
Sbjct: 21  EVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHE 80

Query: 62  DTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFM 121
             VS+ R+V  W G  +ITPL+GA IAD Y GR+WT    S IY  GM+ LT++AS+  +
Sbjct: 81  TNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGL 140

Query: 122 KPT-CTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
           KP  C   +C   +  Q    +S LY+IA+G GG KP +S+FGADQFD  +P ER  K S
Sbjct: 141 KPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKAS 200

Query: 181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
           FFNW+ F+  IGA  ++  LV+IQEN GW LG+ IPT  +  + + F+ G+P+YR + + 
Sbjct: 201 FFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQ-KP 259

Query: 241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI 300
             SP   + +V +AA+R   +++P++ ++  + +T  +                      
Sbjct: 260 RGSPITSVCQVLVAAYRKSNLKVPEDSTDEGDANTNPW---------------------- 297

Query: 301 KHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSP 360
                      CTVTQVE  K++L +  IW   +I S + +QI TLFV+QG  + R++  
Sbjct: 298 ---------KLCTVTQVEEVKILLRLVPIWASGIIFSVLHSQIYTLFVQQGRCMKRTIG- 347

Query: 361 SFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA 420
            F IP A+LG F T S+L+SVP+YDR  VP +RR TG  +G T LQR+G+G  + V+++ 
Sbjct: 348 LFEIPPATLGMFDTASVLISVPIYDRVIVPLVRRFTGLAKGFTELQRMGIGLFVSVLSLT 407

Query: 421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPE 480
            A  VE  R+ + R   +     IVP++IFW +PQY L+G A VF  +G +EFFY+QSP+
Sbjct: 408 FAAIVETVRLQLARDLDLVESGDIVPLNIFWQIPQYFLMGTAGVFFFVGRIEFFYEQSPD 467

Query: 481 DMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWI-GDNLNDCHLDYYYGFLMV 539
            M+SL + +      +GN+L+S ++TLV  ++G++    WI  DN+N+ HLDY++  L+ 
Sbjct: 468 SMRSLCSAWALLTTTLGNYLSSLIITLVAYLSGKD---CWIPSDNINNGHLDYFFWLLVS 524

Query: 540 ISILNLGAFFWASSRYVYKR 559
           +  +N+  F + S +Y + +
Sbjct: 525 LGSVNIPVFVFFSVKYTHMK 544

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M331|PTR45_ARATH Probable peptide/nitrate transporter At3g53960 OS=Arabidopsis thaliana GN=At3g53960 PE=2 SV=2

 Score =  424 bits (1089), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/558 (38%), Positives = 339/558 (60%), Gaps = 15/558 (2%)

Query: 9   DGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVR 68
           D + D +G   L ++TG W+A  F++G E  ER++++GI +NLV YLT+ LH+D   +V+
Sbjct: 23  DSSTDSRGEIPLRAQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVK 82

Query: 69  NVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNG 128
           N N WSGV  + PLLG ++AD Y+GR+ T  L++ IY++G+ILLT++  +  +K  C   
Sbjct: 83  NTNYWSGVTTLMPLLGGFVADAYLGRYGTVLLATTIYLMGLILLTLSWFIPGLK-ACHED 141

Query: 129 ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFS 188
           +C +   +    F+ ++Y+I+IG GG KP++ +FGADQF+D +P ER +K+S+FNWW   
Sbjct: 142 MCVEPRKAHEIAFFIAIYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNAG 201

Query: 189 SFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDL 248
              G L A   +VYI++ +GWG+   I T  +  S  IF IG P YR++   + SP   +
Sbjct: 202 LCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYR-APSGSPLTPM 260

Query: 249 IRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDS 308
           ++V +AA   R +  P + S LHE   ++Y +   R +  S   + LDKAA+      ++
Sbjct: 261 LQVFVAAIAKRNLPCPSDSSLLHELTNEEYTKG--RLLSSSKNLKFLDKAAVIEDRNENT 318

Query: 309 KPP-------CTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS-P 360
           K          TVT+VE  KL++ M  IW  TL       Q +TLF+KQ   ++R ++  
Sbjct: 319 KAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITGT 378

Query: 361 SFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA 420
           SF +P ASL S + LS++++V +Y++  VP +RR TGN RGI++LQR+GVG V  + A+ 
Sbjct: 379 SFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLFAMI 438

Query: 421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPE 480
           IA  +E +R+   +  H++   + + +S  WL PQ+++LGVAD F  +GL E+FYDQ P+
Sbjct: 439 IAALIEKKRLDYAKEHHMN---KTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQVPD 495

Query: 481 DMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVI 540
            M+SLG  F+ S +G  +F+N+ L+T+ D +      KGW G +LN   LD +Y  L  +
Sbjct: 496 SMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEISGKGWFGKDLNSSRLDRFYWMLAAL 555

Query: 541 SILNLGAFFWASSRYVYK 558
           +  N+  F   + RY YK
Sbjct: 556 TAANICCFVIVAMRYTYK 573

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/554 (39%), Positives = 336/554 (60%), Gaps = 23/554 (4%)

Query: 11  TVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNV 70
           TVD + +P + S +G W++  F++G E  ER A+YGI SNL+ YLT  L + T ++  NV
Sbjct: 18  TVDYRNKPAVKSSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANV 77

Query: 71  NNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPT---CTN 127
           N WSG   + PLLGA++AD+++GRF T   +S +Y++G+ +LT++A    M P+    +N
Sbjct: 78  NAWSGTASLLPLLGAFVADSFLGRFRTILAASALYIVGLGVLTLSA----MIPSDCKVSN 133

Query: 128 GICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF 187
            + S +   Q+  F+S+LY++A+  GG KP +  FGADQFD+  P E   K SFFNWW F
Sbjct: 134 LLSSCSPRFQVITFFSALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSSFFNWWYF 193

Query: 188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT-KSPAR 246
               G L     L YIQ+NL W LG+GIP   ++ +LV+  +G+  YR  IR+  +SP  
Sbjct: 194 GMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFV 253

Query: 247 DLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGG 306
            +  V +AA +N  +   D  +           R G      S  F  L+KA +   NG 
Sbjct: 254 RIGNVYVAAVKNWSVSALDVAAAEE--------RLGLVSCSSSQQFSFLNKALVAK-NGS 304

Query: 307 DSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPA 366
                C++ ++E  K VL +A IWL  L+ + ++AQ  T F KQG T+ RS++P ++I  
Sbjct: 305 -----CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISP 359

Query: 367 ASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVE 426
           A+L SF++LS+++ +P+YDR  +P  R  T  P GITMLQR+G G  +  +A+ +A  VE
Sbjct: 360 ATLQSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVE 419

Query: 427 VRRMH-VIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSL 485
           ++R+        +  P   VPMS++WL+PQYVL G+ DVF  +GL EFFYDQ P +++S+
Sbjct: 420 MKRLKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSV 479

Query: 486 GTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNL 545
           G   + S  G+GNFL+SF++++++K T ++G+  W  +NLN  HLDY+Y  L  +S + L
Sbjct: 480 GLALYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGL 539

Query: 546 GAFFWASSRYVYKR 559
            ++ + +  YV KR
Sbjct: 540 ASYLYVAKSYVSKR 553

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
255559629	585	oligopeptide transporter, putative [Rici	0.998	0.996	0.832	0.0
225448617	585	PREDICTED: probable peptide/nitrate tran	0.991	0.989	0.810	0.0
356567878	588	PREDICTED: probable peptide/nitrate tran	0.998	0.991	0.785	0.0
224146187	591	predicted protein [Populus trichocarpa]	0.998	0.986	0.798	0.0
356540034	587	PREDICTED: probable peptide/nitrate tran	0.998	0.993	0.786	0.0
449457417	586	PREDICTED: probable peptide/nitrate tran	0.991	0.988	0.779	0.0
357461509	623	Peptide transporter PTR3-A [Medicago tru	0.998	0.935	0.772	0.0
297823977	582	predicted protein [Arabidopsis lyrata su	0.982	0.986	0.743	0.0
312283401	582	unnamed protein product [Thellungiella h	0.982	0.986	0.738	0.0
15226687	583	putative peptide/nitrate transporter [Ar	0.981	0.982	0.743	0.0

>gi|255559629|ref|XP_002520834.1| oligopeptide transporter, putative [Ricinus communis] gi|223539965|gb|EEF41543.1| oligopeptide transporter, putative [Ricinus communis]

 Score = 1030 bits (2663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/584 (83%), Positives = 536/584 (91%), Gaps = 1/584 (0%)

Query: 1   MEAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH 60
           ME+KG+TQDGTVDL GRPVL+SKTGKWKACAFLVGYEAFERMAFYGI SNLVNYLT+QLH
Sbjct: 1   MESKGYTQDGTVDLHGRPVLASKTGKWKACAFLVGYEAFERMAFYGIASNLVNYLTTQLH 60

Query: 61  EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKF 120
           EDTV+SVRNVNNWSG VWITP+LGAYIADTY+GR+WTFT+SSL YV+GMILLTMA SLKF
Sbjct: 61  EDTVASVRNVNNWSGSVWITPILGAYIADTYMGRYWTFTVSSLFYVMGMILLTMAVSLKF 120

Query: 121 MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
           MKPTC NG+C+K + SQIAFFY+SLYIIAIGAGGTKPNISTFGADQFDDF+P E+ LKVS
Sbjct: 121 MKPTCINGVCNKATPSQIAFFYTSLYIIAIGAGGTKPNISTFGADQFDDFDPKEKKLKVS 180

Query: 181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
           FFNWWMFSSF+GAL ATL LVYIQEN+GWGLGYGIPT GL+ SL IFY+G+P+YRHK+ K
Sbjct: 181 FFNWWMFSSFLGALVATLCLVYIQENMGWGLGYGIPTVGLILSLFIFYLGTPLYRHKVSK 240

Query: 241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI 300
           TKSPARDLI+VPI AFRNRK+QLP +PS LHEF+ Q YI +GKRQV H+P FRCLDKAA+
Sbjct: 241 TKSPARDLIQVPIVAFRNRKLQLPTDPSRLHEFELQYYIDTGKRQVHHTPVFRCLDKAAL 300

Query: 301 KHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSP 360
           K GN  DS PPCTVTQVEGTKLVLGM LIW+VTLIPSTIWAQINTLFVKQGTTL+R L  
Sbjct: 301 KDGNTYDSSPPCTVTQVEGTKLVLGMILIWVVTLIPSTIWAQINTLFVKQGTTLDRGLGS 360

Query: 361 SFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA 420
           +F+IPAASLGSFVTLSMLLSVPMYDR+FVPFMR++TGNPRGIT+LQRLG+GFVIQV AIA
Sbjct: 361 NFQIPAASLGSFVTLSMLLSVPMYDRFFVPFMRKKTGNPRGITLLQRLGIGFVIQVTAIA 420

Query: 421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPE 480
           IAYAVEVRRMHVIRVQH   P +IVPMSIFWLLPQYVLLG+ADVFNAIGLLEFFYDQSPE
Sbjct: 421 IAYAVEVRRMHVIRVQHTRSPTEIVPMSIFWLLPQYVLLGIADVFNAIGLLEFFYDQSPE 480

Query: 481 DMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVI 540
           DMQSLGTTFFTSGIG GNFLNSFLVT+VDK+TGR G K WIG+NLNDCHLDYYYGFL+VI
Sbjct: 481 DMQSLGTTFFTSGIGAGNFLNSFLVTMVDKITGRGGGKSWIGNNLNDCHLDYYYGFLLVI 540

Query: 541 SILNLGAFFWASSRYVYKRETKEVNEGCVEMETKALDTS-LGLH 583
           S LNLGAF WASSR++YK+ET +VNEGCV+ME K LDTS LGL 
Sbjct: 541 STLNLGAFLWASSRFIYKKETIKVNEGCVQMEGKTLDTSPLGLQ 584

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448617|ref|XP_002278980.1| PREDICTED: probable peptide/nitrate transporter At2g40460 [Vitis vinifera] gi|297736523|emb|CBI25394.3| unnamed protein product [Vitis vinifera]

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/579 (81%), Positives = 523/579 (90%)

Query: 1   MEAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH 60
           MEAKG+TQDGTVDLQGRPV++SKTGKW+ACAFLVGYEAFERMAFYG+ SNLV YLT+QLH
Sbjct: 1   MEAKGYTQDGTVDLQGRPVIASKTGKWRACAFLVGYEAFERMAFYGVASNLVVYLTTQLH 60

Query: 61  EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKF 120
           ED VSSVRNVNNWSG VW+TP+LGAYIAD+Y+GRFWTFT+SSLIYVLGM+LLTMA SLKF
Sbjct: 61  EDNVSSVRNVNNWSGSVWMTPILGAYIADSYLGRFWTFTVSSLIYVLGMVLLTMAVSLKF 120

Query: 121 MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
           +KPTC NG+C+K STSQIAFFYS+LYIIA+G+GGTKPNISTFGADQFDDFN  E+ LKVS
Sbjct: 121 LKPTCANGVCNKASTSQIAFFYSALYIIAVGSGGTKPNISTFGADQFDDFNAKEKELKVS 180

Query: 181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
           FFNWWMFSSF+GAL ATLGLVYIQENLGWGLGYGIPT GLL SL IFYIG+PIYRHK+RK
Sbjct: 181 FFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLLSLFIFYIGTPIYRHKVRK 240

Query: 241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI 300
           +KSPARDLIRV IAAF+NRK+ LP  PSELHE + Q Y  SGKRQV H+P F  LDKAAI
Sbjct: 241 SKSPARDLIRVLIAAFKNRKLTLPTQPSELHELELQHYSSSGKRQVHHTPTFSFLDKAAI 300

Query: 301 KHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSP 360
           K GN G ++PPCTVTQVEGTKLV GM +IWLVTLIPSTIWAQINTLFVKQGTTL+R L  
Sbjct: 301 KEGNMGTTRPPCTVTQVEGTKLVFGMIMIWLVTLIPSTIWAQINTLFVKQGTTLDRHLGS 360

Query: 361 SFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA 420
           SFRIPAASLGSFVTLSMLLSVPMYDRYFVP MRR+TGNPRGIT+LQR+G+GF++QV+A+A
Sbjct: 361 SFRIPAASLGSFVTLSMLLSVPMYDRYFVPLMRRKTGNPRGITLLQRIGIGFMLQVIAVA 420

Query: 421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPE 480
           IAY VE+RRMHVIR+  + GPK++VPMSIFWLLPQYVL+G+ DVFNAIGLLEFFYDQSPE
Sbjct: 421 IAYGVELRRMHVIRIHQVVGPKEVVPMSIFWLLPQYVLIGIGDVFNAIGLLEFFYDQSPE 480

Query: 481 DMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVI 540
           DMQSLGTTFFTSGIGVGNFLNSFLVT+VDK+T R G K WIG NLND HLDYYYGFL+VI
Sbjct: 481 DMQSLGTTFFTSGIGVGNFLNSFLVTVVDKITRRGGGKSWIGKNLNDTHLDYYYGFLLVI 540

Query: 541 SILNLGAFFWASSRYVYKRETKEVNEGCVEMETKALDTS 579
           S LNLGAF WAS +Y+YKRE  EV    V++E+KALDTS
Sbjct: 541 SALNLGAFLWASGKYIYKRENIEVYVDGVQVESKALDTS 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567878|ref|XP_003552142.1| PREDICTED: probable peptide/nitrate transporter At2g40460-like [Glycine max]

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/587 (78%), Positives = 524/587 (89%), Gaps = 4/587 (0%)

Query: 1   MEAKG-FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL 59
           MEAK  +TQDGTVD +G+P +SSKTGKWKACAFLVGYEAFERMAFYG+ SNLVNYLT+QL
Sbjct: 1   MEAKADYTQDGTVDFRGQPAVSSKTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQL 60

Query: 60  HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK 119
           HEDTVSSVRNVNNWSG VWITP+LGAY+AD+Y+GRFWTFTLSSL+YVLGM LLT+A SLK
Sbjct: 61  HEDTVSSVRNVNNWSGSVWITPILGAYVADSYLGRFWTFTLSSLVYVLGMTLLTVAVSLK 120

Query: 120 FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV 179
            ++PTCTNGIC+K STSQIAFFY++LY +AIGAGGTKPNISTFGADQFDDFNP E+ LK 
Sbjct: 121 SLRPTCTNGICNKASTSQIAFFYTALYTMAIGAGGTKPNISTFGADQFDDFNPNEKELKA 180

Query: 180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIR 239
           SFFNWWMF+SF+GAL ATLGLVYIQENLGWGLGYGIPTAGLL SLVIFYIG+PIYRHK+ 
Sbjct: 181 SFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGLLLSLVIFYIGTPIYRHKVS 240

Query: 240 KTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAA 299
            TK+PARD+IRVPIAAFRNRK+QLP NPS+L+E + Q Y+ SGKRQV H+P  R LDKAA
Sbjct: 241 TTKTPARDIIRVPIAAFRNRKLQLPINPSDLYEHNLQHYVNSGKRQVYHTPTLRFLDKAA 300

Query: 300 IKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS 359
           IK  + G ++ P TV+QVEG KL+ GMAL+WLVTLIPSTIWAQINTLFVKQGTTL+R+L 
Sbjct: 301 IKEVSAGSTRVPLTVSQVEGAKLIFGMALVWLVTLIPSTIWAQINTLFVKQGTTLDRNLG 360

Query: 360 PSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI 419
           P F+IP+ASLGSFVTLSMLLSVPMYDR+FVPFMR++TG+PRGIT+LQRLG+GF IQ++AI
Sbjct: 361 PHFKIPSASLGSFVTLSMLLSVPMYDRFFVPFMRQKTGHPRGITLLQRLGIGFSIQIIAI 420

Query: 420 AIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP 479
           AIAY VEVRRMHVI   H++ PK IVPMSIFWLLPQYVL+G+ADVFNAIGLLEFFYDQSP
Sbjct: 421 AIAYVVEVRRMHVIGANHVASPKDIVPMSIFWLLPQYVLIGIADVFNAIGLLEFFYDQSP 480

Query: 480 EDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMV 539
           EDMQSLGTTFFTSGIGVGNFLNSFLVT+VDK+TGR  +K WIGDNLNDCHLDYYYGFL+V
Sbjct: 481 EDMQSLGTTFFTSGIGVGNFLNSFLVTMVDKITGRGDKKSWIGDNLNDCHLDYYYGFLLV 540

Query: 540 ISILNLGAFFWASSRYVYKRETKEVNEG-CVEME--TKALDTSLGLH 583
           +S +N+  F W SSRY+YKRE+  V EG CV+ME     LD SLGL 
Sbjct: 541 MSSVNMVVFLWVSSRYIYKRESIRVKEGLCVQMEGGNPTLDASLGLQ 587

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146187|ref|XP_002325913.1| predicted protein [Populus trichocarpa] gi|222862788|gb|EEF00295.1| predicted protein [Populus trichocarpa]

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/590 (79%), Positives = 527/590 (89%), Gaps = 7/590 (1%)

Query: 1   MEAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH 60
           M+ K  TQDGTVDL+GRPV +S+TGKWKACAFLVGYEAFERMAFYG+ SNLVNYLT+QLH
Sbjct: 1   MDTKCCTQDGTVDLRGRPVQASRTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQLH 60

Query: 61  EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKF 120
           E+TV+SVRNVNNWSG VWITP+LGAYIADTY+GR+WTFT+SSLIY +GMILLTMA S KF
Sbjct: 61  EETVASVRNVNNWSGAVWITPILGAYIADTYLGRYWTFTVSSLIYAMGMILLTMAVSFKF 120

Query: 121 MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
           MKPTCTNG+C+K S SQIAFFYS+LYIIAIGAGGTKPNISTFGADQFDD+NP E+ LKVS
Sbjct: 121 MKPTCTNGVCNKASPSQIAFFYSALYIIAIGAGGTKPNISTFGADQFDDYNPQEKKLKVS 180

Query: 181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
           FFNWWMFSSF+GAL ATL LVYIQENLGWGLGYGIP  GLL SL IFY+G+PIYRHK+RK
Sbjct: 181 FFNWWMFSSFVGALFATLCLVYIQENLGWGLGYGIPAVGLLLSLFIFYLGTPIYRHKVRK 240

Query: 241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI 300
           TKSPAR+L +V IAAF NRK+QLP++PSEL EFD Q YI++GKRQV H+P  RCLDKAAI
Sbjct: 241 TKSPARELFQVLIAAFNNRKLQLPNSPSELQEFDLQYYIQTGKRQVHHTPVLRCLDKAAI 300

Query: 301 KHG-NGGDSKPP----CTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLN 355
           K G N  D+  P    CTVTQVEG KLV GM LIWLVTLIPSTIWAQINTLFVKQGTTL+
Sbjct: 301 KDGSNNADTSNPSSSSCTVTQVEGVKLVFGMMLIWLVTLIPSTIWAQINTLFVKQGTTLD 360

Query: 356 RSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQ 415
           R+L P+F+IPAASLGSFVT SMLLSVPMYDR+FVPFMR++TGNPRGIT+LQRLG+GF IQ
Sbjct: 361 RNLGPNFQIPAASLGSFVTFSMLLSVPMYDRFFVPFMRKKTGNPRGITLLQRLGIGFAIQ 420

Query: 416 VMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFY 475
           V+AIAIAYAVEVRRMHVIR+ H+ GPK+IVPMSIFWLLPQYVLLG+ADVFNAIGLLEFFY
Sbjct: 421 VIAIAIAYAVEVRRMHVIRMHHVVGPKEIVPMSIFWLLPQYVLLGIADVFNAIGLLEFFY 480

Query: 476 DQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYG 535
           DQSPEDMQSLGTTFFTSGIGVGNFLNSFLVT+V K+TG  G K WIG+NLND HLDYYYG
Sbjct: 481 DQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTMVAKITGTGGGKSWIGNNLNDSHLDYYYG 540

Query: 536 FLMVISILNLGAFFWASSRYVYKRET-KEVNEGCVEMETKALDTS-LGLH 583
           FL+VIS LNLG F WASSRYVYK+ET + +NE C+ ++ K +DTS LGL 
Sbjct: 541 FLLVISALNLGVFLWASSRYVYKKETLQALNEDCIRIDGKTMDTSPLGLQ 590

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540034|ref|XP_003538496.1| PREDICTED: probable peptide/nitrate transporter At2g40460-like [Glycine max]

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/586 (78%), Positives = 524/586 (89%), Gaps = 3/586 (0%)

Query: 1   MEAKG-FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL 59
           MEAK  +TQDGT+D +G+P +SSKTGKWKACAFLVGYEAFERMAFYG+ SNLVNYLTSQL
Sbjct: 1   MEAKADYTQDGTIDFRGQPAVSSKTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTSQL 60

Query: 60  HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK 119
           HEDTVSSVRNVNNWSG VWITP+LGAYIAD+Y+GRFWTFTLSSLIYVLGM LLT+A SLK
Sbjct: 61  HEDTVSSVRNVNNWSGSVWITPILGAYIADSYLGRFWTFTLSSLIYVLGMTLLTVAVSLK 120

Query: 120 FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV 179
            ++PTCTNGIC+K STSQIAFFY++LY +AIGAGGTKPNISTFGADQFDDFNP E+ LK 
Sbjct: 121 SLRPTCTNGICNKASTSQIAFFYTALYTMAIGAGGTKPNISTFGADQFDDFNPNEKELKA 180

Query: 180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIR 239
           SFFNWWMF+SF+GAL ATLGLVYIQENLGWGLGYGIPTAGLL SLVIFYIG+PIYRHK+ 
Sbjct: 181 SFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGLLLSLVIFYIGTPIYRHKVS 240

Query: 240 KTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAA 299
            TK+PA D+IRVPIAAFRNRK+QLP NPS+L+E + QDY+ SGKRQV H+P  R LDKAA
Sbjct: 241 TTKTPASDIIRVPIAAFRNRKLQLPSNPSDLYEHNLQDYVNSGKRQVYHTPTLRFLDKAA 300

Query: 300 IKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS 359
           IK  + G ++ P TV+QVEG KL+ GM L+WLVTLIPSTIWAQINTLFVKQGTTL+R++ 
Sbjct: 301 IKEDSAGSTRVPLTVSQVEGAKLIFGMVLVWLVTLIPSTIWAQINTLFVKQGTTLDRNIG 360

Query: 360 PSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI 419
           P F+IP+ASLGSFVTLSMLLSVPMYD +FVPFMR++TG+PRGIT+LQRLG+GF IQ++AI
Sbjct: 361 PHFKIPSASLGSFVTLSMLLSVPMYDWFFVPFMRQKTGHPRGITLLQRLGIGFSIQIIAI 420

Query: 420 AIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP 479
           AIAYAVEVRRMHVI   H++GPK IVPMSIFWL+PQYVL+G+ADVFNAIGLLEFFYDQSP
Sbjct: 421 AIAYAVEVRRMHVIGANHVAGPKDIVPMSIFWLMPQYVLIGIADVFNAIGLLEFFYDQSP 480

Query: 480 EDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMV 539
           EDMQSLGTTFFTSGIG GNFLNSFLVT+VDK+TGR  +K WIGDNLNDCHLDYYYGFL+V
Sbjct: 481 EDMQSLGTTFFTSGIGFGNFLNSFLVTMVDKITGRGDKKSWIGDNLNDCHLDYYYGFLLV 540

Query: 540 ISILNLGAFFWASSRYVYKRETKEVNEG-CVEMETK-ALDTSLGLH 583
           +S +N+  F W SSRY+YKRE+  V EG CV+ME K  LD SLGL 
Sbjct: 541 MSSVNMVVFLWVSSRYIYKRESIRVKEGLCVQMEGKPTLDASLGLQ 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457417|ref|XP_004146445.1| PREDICTED: probable peptide/nitrate transporter At2g40460-like [Cucumis sativus] gi|449491667|ref|XP_004158968.1| PREDICTED: probable peptide/nitrate transporter At2g40460-like [Cucumis sativus]

 Score =  939 bits (2426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/589 (77%), Positives = 517/589 (87%), Gaps = 10/589 (1%)

Query: 1   MEAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH 60
           ME K  TQDGTVDL+G+PVL+SKTGKWKACAFLVGYEAFERMAFYGI SNLVNYLT+QLH
Sbjct: 1   METKDLTQDGTVDLRGQPVLASKTGKWKACAFLVGYEAFERMAFYGIASNLVNYLTTQLH 60

Query: 61  EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKF 120
           EDTVSSVRNVNNWSG VW+TP+ GAYIAD+++GRFWTFT SSLIYV+GM+ LTMA S+K 
Sbjct: 61  EDTVSSVRNVNNWSGSVWLTPIFGAYIADSFLGRFWTFTFSSLIYVMGMVFLTMAVSVKT 120

Query: 121 MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
           +KPTC NG+CSK + SQI FFY SLY IA+GAGGTKPNISTFGADQFDDFNP E+ +KVS
Sbjct: 121 LKPTCNNGVCSKATPSQITFFYVSLYTIALGAGGTKPNISTFGADQFDDFNPTEKQMKVS 180

Query: 181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
           FFNWWMFSSF+GAL ATLGLVY+QEN+GWGLGYGIPT GLLFSL IFY+G+PIYRHK+RK
Sbjct: 181 FFNWWMFSSFLGALFATLGLVYVQENIGWGLGYGIPTVGLLFSLFIFYLGTPIYRHKVRK 240

Query: 241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSG----KRQVVHSPAFRCLD 296
           ++SPA+DLIRVP+ AFRNRK++LP +P+EL+E + Q Y   G    KRQV H+P FR LD
Sbjct: 241 SRSPAKDLIRVPVTAFRNRKLELPASPNELYEVELQSYPGYGAGASKRQVQHTPTFRFLD 300

Query: 297 KAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNR 356
           KAAIK G    S+P CTVTQVEGTKLVLGM +IWL TL+PSTIWAQINTLFVKQGTTLNR
Sbjct: 301 KAAIKDGT-NSSRPSCTVTQVEGTKLVLGMIIIWLATLVPSTIWAQINTLFVKQGTTLNR 359

Query: 357 SLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQV 416
           +LS  F+IPAASLGSFVTLSML+SVPMYDRYFVPFMR++TGNPRGIT+LQRLG+GFVIQ+
Sbjct: 360 TLSHGFQIPAASLGSFVTLSMLISVPMYDRYFVPFMRQKTGNPRGITLLQRLGIGFVIQI 419

Query: 417 MAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYD 476
           +AIAIAYAVEVRRMHVIR  HI  PK++VPMSI WLLPQY+LLG+ADVFNAIGLLEFFYD
Sbjct: 420 IAIAIAYAVEVRRMHVIRTNHIVQPKEVVPMSILWLLPQYILLGIADVFNAIGLLEFFYD 479

Query: 477 QSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGF 536
           QSPE MQSLGTTFFTSGIGVGNFLNSFLVT+VDKVTG N  K WIG+NLND HLDYYYGF
Sbjct: 480 QSPEHMQSLGTTFFTSGIGVGNFLNSFLVTVVDKVTGENSGKSWIGNNLNDSHLDYYYGF 539

Query: 537 LMVISILNLGAFFWASSRYVYKRET-KEVNEGCVEMETKALDTS-LGLH 583
           L+VIS +NLG F W SS Y+YK+E   EV +G   METK LDTS LGL 
Sbjct: 540 LLVISTINLGLFLWVSSMYIYKKEAIDEVKDG---METKGLDTSPLGLQ 585

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357461509|ref|XP_003601036.1| Peptide transporter PTR3-A [Medicago truncatula] gi|355490084|gb|AES71287.1| Peptide transporter PTR3-A [Medicago truncatula]

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/588 (77%), Positives = 510/588 (86%), Gaps = 5/588 (0%)

Query: 1   MEAK-GFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL 59
           MEAK  +T DGTVD  G+P + SKTGKWKACAFLVGYEAFERMAFYG+ SNLVNYLT+QL
Sbjct: 1   MEAKEDYTHDGTVDFHGKPAVPSKTGKWKACAFLVGYEAFERMAFYGVASNLVNYLTTQL 60

Query: 60  HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK 119
           HEDTVSSVRNVN WSG VWITP+LGAYIAD+Y+GRFWTFTLSSLIYVLGM LLT+A SLK
Sbjct: 61  HEDTVSSVRNVNTWSGSVWITPILGAYIADSYLGRFWTFTLSSLIYVLGMTLLTIAVSLK 120

Query: 120 FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV 179
            +KPTCTNGIC+K STSQI FFY++LY +AIGAGGTKPNISTFGADQFDDFNP+E+ LK 
Sbjct: 121 SLKPTCTNGICNKASTSQITFFYTALYTMAIGAGGTKPNISTFGADQFDDFNPHEKELKA 180

Query: 180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIR 239
           SFFNWWMF+SF+GAL ATLGLVYIQENLGWGLGYGIPTAGL+ SLVIFYIG+PIYRHK+R
Sbjct: 181 SFFNWWMFTSFLGALIATLGLVYIQENLGWGLGYGIPTAGLILSLVIFYIGTPIYRHKVR 240

Query: 240 KTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAA 299
            +KSPA+D+IRV I AF++RK+QLP NPSELHEF  +  +  GKRQV H+P  R LDKAA
Sbjct: 241 TSKSPAKDIIRVFIVAFKSRKLQLPSNPSELHEFQMEHCVIRGKRQVYHTPTLRFLDKAA 300

Query: 300 IKHG--NGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRS 357
           IK     G   + P TV QVEG KL+LGM LIWLVTLIPSTIWAQINTLFVKQGTTL+R+
Sbjct: 301 IKEDPTTGSSRRVPMTVNQVEGAKLILGMLLIWLVTLIPSTIWAQINTLFVKQGTTLDRN 360

Query: 358 LSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVM 417
           L P F+IPAASLGSFVTLSMLLSVPMYDR FVPFMR++TG+PRGIT+LQRLG+GF IQ++
Sbjct: 361 LGPDFKIPAASLGSFVTLSMLLSVPMYDRLFVPFMRQKTGHPRGITLLQRLGIGFSIQII 420

Query: 418 AIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQ 477
           AIAIAYAVEVRRMHVI+  HI GPK IVPMSIFWLLPQYVL+G+ADVFNAIGLLEFFYDQ
Sbjct: 421 AIAIAYAVEVRRMHVIKENHIFGPKDIVPMSIFWLLPQYVLIGIADVFNAIGLLEFFYDQ 480

Query: 478 SPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFL 537
           SPEDMQSLGTTFFTSGIGVGNFLNSFLVT+ DK+TGR   K WI DNLND HLDYYYGFL
Sbjct: 481 SPEDMQSLGTTFFTSGIGVGNFLNSFLVTMTDKITGRGDRKSWIADNLNDSHLDYYYGFL 540

Query: 538 MVISILNLGAFFWASSRYVYKRETKEVNEG-CVEME-TKALDTSLGLH 583
           +++S +NL  F W SSRY+YK+E+  + E  CV+ME    LD SLGL 
Sbjct: 541 LILSSVNLLVFLWVSSRYIYKKESSRIKEALCVQMEGNSTLDASLGLQ 588

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823977|ref|XP_002879871.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297325710|gb|EFH56130.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  913 bits (2359), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/578 (74%), Positives = 504/578 (87%), Gaps = 4/578 (0%)

Query: 3   AKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED 62
           AK +TQDGTVDLQGRPVL+SKTG+W+AC+FL+GYEAFERMAFYGI SNLVNYLT++LHED
Sbjct: 4   AKVYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTTRLHED 63

Query: 63  TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMK 122
           T+SSVRNVNNWSG VWITP+ GAYIAD+YIGRFWTFT SSLIYVLGMILLTMA ++K ++
Sbjct: 64  TISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLR 123

Query: 123 PTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF 182
           PTC NG+C+K S+ QI FFY SLY IAIGAGGTKPNISTFGADQFD+++  E+  KVSFF
Sbjct: 124 PTCENGVCNKASSLQITFFYVSLYTIAIGAGGTKPNISTFGADQFDNYSIEEKKQKVSFF 183

Query: 183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTK 242
           NWWMFSSF+GAL ATLGLVYIQENLGWGLGYGIPT GLL SL++FYIG+P YRHK+ K+ 
Sbjct: 184 NWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLIVFYIGTPFYRHKVIKSD 243

Query: 243 SPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKH 302
           + A+DL++VPI AF+NRK+Q PD+  EL+E D+  Y  +GK QV H+P FR LDKAAIK 
Sbjct: 244 NLAKDLVQVPIEAFKNRKLQCPDDLMELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKT 303

Query: 303 GNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSF 362
            +      PCTVT+VE  K VLG+  IWLVTLIPST+WAQ+NTLFVKQGTTL+R +  +F
Sbjct: 304 SS---RILPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNF 360

Query: 363 RIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA 422
           +IPAASLGSFVTLSMLLSVPMYD+YFVPFMR++TGNPRGIT+LQRLG+GF IQ++AIA+A
Sbjct: 361 QIPAASLGSFVTLSMLLSVPMYDQYFVPFMRKKTGNPRGITLLQRLGIGFAIQIVAIAVA 420

Query: 423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDM 482
            AVEV+RMHVIR  HI+ PKQ+VPMSIFWLLPQY LLG+ DVFNAIGLLEFFYDQSPE+M
Sbjct: 421 SAVEVKRMHVIREFHITSPKQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 480

Query: 483 QSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISI 542
           QSLGTTFFTSGIG+GNFLNSFLVT++DK+T R G K WIGDNLND  LDYYYGFLMVISI
Sbjct: 481 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSRGGGKSWIGDNLNDSRLDYYYGFLMVISI 540

Query: 543 LNLGAFFWASSRYVYKR-ETKEVNEGCVEMETKALDTS 579
           +N+G F WA+++YVYK  ETKE++ G V+ME KA +TS
Sbjct: 541 VNMGFFLWAATKYVYKSDETKELSGGSVQMEAKAFETS 578

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283401|dbj|BAJ34566.1| unnamed protein product [Thellungiella halophila]

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/578 (73%), Positives = 505/578 (87%), Gaps = 4/578 (0%)

Query: 3   AKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED 62
           AK FTQDGTVDLQGRPVL+SKTG+W+AC+FL+GYEAFERMAFYGI SNLVNYLT++LHED
Sbjct: 4   AKVFTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTTKLHED 63

Query: 63  TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMK 122
           T+SSVRNVNNWSG VWITP+ GAYIAD+Y+GRFWTFT SSLIYVLGM LLTMA ++K ++
Sbjct: 64  TISSVRNVNNWSGAVWITPIAGAYIADSYMGRFWTFTASSLIYVLGMFLLTMAVTVKSLR 123

Query: 123 PTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF 182
           P C NG+C+K S+ QI FFY SLY IAIGAGGTKPNISTFGADQFD+++  E+  KVSFF
Sbjct: 124 PKCVNGVCNKASSLQITFFYISLYTIAIGAGGTKPNISTFGADQFDNYSLGEKKQKVSFF 183

Query: 183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTK 242
           NWWMFSSF+GAL ATLGLVYIQEN+GWGLGYGIPT GLL SL++FY+G+P YRHK+ KT 
Sbjct: 184 NWWMFSSFLGALFATLGLVYIQENVGWGLGYGIPTIGLLVSLIVFYVGTPFYRHKVVKTD 243

Query: 243 SPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKH 302
           + A+DLI+VP AA++NRK+Q PD+  ELHE D+Q Y  +GKRQV H+P FR LDKAAIK 
Sbjct: 244 NLAKDLIKVPFAAYKNRKLQCPDDLLELHELDSQYYKSTGKRQVHHTPIFRFLDKAAIKT 303

Query: 303 GNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSF 362
            +      PCTVT+VE  K VLG+ LIWLVTLIP+T+WAQ+NTLFVKQGTTL+R +  SF
Sbjct: 304 SS---RDLPCTVTKVEVAKRVLGLILIWLVTLIPNTLWAQVNTLFVKQGTTLDRKVGSSF 360

Query: 363 RIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA 422
           +IPAASLGSFVTLSMLLSVPMYD++FVP MR++TGNPRGIT+LQRLG+GFVIQ++AIA+A
Sbjct: 361 QIPAASLGSFVTLSMLLSVPMYDQFFVPLMRKKTGNPRGITLLQRLGIGFVIQIVAIAVA 420

Query: 423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDM 482
            AVE++RM V++  HI+ PKQ+VPMSIFWLLPQY LLG+ DVFNAIGLLEFFYDQSPE+M
Sbjct: 421 SAVEIKRMRVVKEFHITSPKQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 480

Query: 483 QSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISI 542
           QSLGTTFFTSGIG+GNFLNSFLVT++DK+T + G K WIGDNLND  LDYYYGFL+VISI
Sbjct: 481 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGDNLNDSRLDYYYGFLVVISI 540

Query: 543 LNLGAFFWASSRYVYKR-ETKEVNEGCVEMETKALDTS 579
           +N+G F WA+S+YVYK  ETK+ + GCV+ME KALDTS
Sbjct: 541 VNMGLFLWAASKYVYKSDETKDFSGGCVQMEAKALDTS 578

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15226687|ref|NP_181578.1| putative peptide/nitrate transporter [Arabidopsis thaliana] gi|310947333|sp|Q8VZR7.2|PTR30_ARATH RecName: Full=Probable peptide/nitrate transporter At2g40460 gi|2651310|gb|AAB87590.1| putative PTR2 family peptide transporter [Arabidopsis thaliana] gi|20453068|gb|AAM19779.1| At2g40460/T2P4.19 [Arabidopsis thaliana] gi|23297804|gb|AAN13029.1| putative PTR2 family peptide transporter [Arabidopsis thaliana] gi|25090213|gb|AAN72253.1| At2g40460/T2P4.19 [Arabidopsis thaliana] gi|330254739|gb|AEC09833.1| putative peptide/nitrate transporter [Arabidopsis thaliana]

 Score =  883 bits (2282), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/580 (74%), Positives = 502/580 (86%), Gaps = 7/580 (1%)

Query: 3   AKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED 62
           AK +TQDGTVDLQGRPVL+SKTG+W+AC+FL+GYEAFERMAFYGI SNLVNYLT +LHED
Sbjct: 4   AKVYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHED 63

Query: 63  TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMK 122
           T+SSVRNVNNWSG VWITP+ GAYIAD+YIGRFWTFT SSLIYVLGMILLTMA ++K ++
Sbjct: 64  TISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLR 123

Query: 123 PTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF 182
           PTC NG+C+K S+ Q+ FFY SLY IAIGAGGTKPNISTFGADQFD ++  E+  KVSFF
Sbjct: 124 PTCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSFF 183

Query: 183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTK 242
           NWWMFSSF+GAL ATLGLVYIQENLGWGLGYGIPT GLL SLV+FYIG+P YRHK+ KT 
Sbjct: 184 NWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKTD 243

Query: 243 SPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKH 302
           + A+DL++VPIAAF+NRK+Q PD+  EL+E D+  Y  +GK QV H+P FR LDKAAIK 
Sbjct: 244 NLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKT 303

Query: 303 GNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSF 362
                S+ PCTVT+VE  K VLG+  IWLVTLIPST+WAQ+NTLFVKQGTTL+R +  +F
Sbjct: 304 ----SSRVPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNF 359

Query: 363 RIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA 422
           +IPAASLGSFVTLSMLLSVPMYD+ FVPFMR++TGNPRGIT+LQRLGVGF IQ++AIAIA
Sbjct: 360 QIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIA 419

Query: 423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDM 482
            AVEV+RM VI+  HI+ P Q+VPMSIFWLLPQY LLG+ DVFNAIGLLEFFYDQSPE+M
Sbjct: 420 SAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 479

Query: 483 QSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISI 542
           QSLGTTFFTSGIG+GNFLNSFLVT++DK+T + G K WIG+NLND  LDYYYGFL+VISI
Sbjct: 480 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVVISI 539

Query: 543 LNLGAFFWASSRYVYKR--ETKEVN-EGCVEMETKALDTS 579
           +N+G F WA+S+YVYK   +TKE +  GCV+ME KALDTS
Sbjct: 540 VNMGLFVWAASKYVYKSDDDTKEFSGGGCVQMEAKALDTS 579

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	584
TAIR|locus:2061843	583	AT2G40460 [Arabidopsis thalian	0.984	0.986	0.742	1.8e-238
TAIR|locus:2161438	582	PTR3 "peptide transporter 3" [	0.965	0.969	0.493	7.1e-148
TAIR|locus:2161428	586	AT5G46040 [Arabidopsis thalian	0.950	0.947	0.485	4.8e-142
TAIR|locus:2080235	570	PTR1 "peptide transporter 1" [	0.950	0.973	0.443	3.1e-131
TAIR|locus:2041125	585	PTR2 "peptide transporter 2" [	0.952	0.950	0.435	1e-130
TAIR|locus:2150124	570	PTR5 "peptide transporter 5" [	0.946	0.970	0.430	2.8e-130
TAIR|locus:2018032	590	PTR6 "peptide transporter 6" [	0.928	0.918	0.441	9.6e-128
TAIR|locus:2041140	545	PTR4 "peptide transporter 4" [	0.472	0.506	0.431	1.3e-115
TAIR|locus:2009487	557	AT1G22540 [Arabidopsis thalian	0.914	0.958	0.395	2.5e-113
TAIR|locus:2084500	602	AT3G53960 [Arabidopsis thalian	0.928	0.900	0.393	2.3e-110

TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)]

 Score = 2299 (814.3 bits), Expect = 1.8e-238, P = 1.8e-238
 Identities = 433/583 (74%), Positives = 504/583 (86%)

Query:     1 MEA-KGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL 59
             MEA K +TQDGTVDLQGRPVL+SKTG+W+AC+FL+GYEAFERMAFYGI SNLVNYLT +L
Sbjct:     1 MEAAKVYTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRL 60

Query:    60 HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK 119
             HEDT+SSVRNVNNWSG VWITP+ GAYIAD+YIGRFWTFT SSLIYVLGMILLTMA ++K
Sbjct:    61 HEDTISSVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVK 120

Query:   120 FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV 179
              ++PTC NG+C+K S+ Q+ FFY SLY IAIGAGGTKPNISTFGADQFD ++  E+  KV
Sbjct:   121 SLRPTCENGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKV 180

Query:   180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIR 239
             SFFNWWMFSSF+GAL ATLGLVYIQENLGWGLGYGIPT GLL SLV+FYIG+P YRHK+ 
Sbjct:   181 SFFNWWMFSSFLGALFATLGLVYIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVI 240

Query:   240 KTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAA 299
             KT + A+DL++VPIAAF+NRK+Q PD+  EL+E D+  Y  +GK QV H+P FR LDKAA
Sbjct:   241 KTDNLAKDLVQVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAA 300

Query:   300 IKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS 359
             IK      S+ PCTVT+VE  K VLG+  IWLVTLIPST+WAQ+NTLFVKQGTTL+R + 
Sbjct:   301 IKTS----SRVPCTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIG 356

Query:   360 PSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI 419
              +F+IPAASLGSFVTLSMLLSVPMYD+ FVPFMR++TGNPRGIT+LQRLGVGF IQ++AI
Sbjct:   357 SNFQIPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAI 416

Query:   420 AIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP 479
             AIA AVEV+RM VI+  HI+ P Q+VPMSIFWLLPQY LLG+ DVFNAIGLLEFFYDQSP
Sbjct:   417 AIASAVEVKRMRVIKEFHITSPTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSP 476

Query:   480 EDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMV 539
             E+MQSLGTTFFTSGIG+GNFLNSFLVT++DK+T + G K WIG+NLND  LDYYYGFL+V
Sbjct:   477 EEMQSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGKSWIGNNLNDSRLDYYYGFLVV 536

Query:   540 ISILNLGAFFWASSRYVYKRE--TKEVNEG-CVEMETKALDTS 579
             ISI+N+G F WA+S+YVYK +  TKE + G CV+ME KALDTS
Sbjct:   537 ISIVNMGLFVWAASKYVYKSDDDTKEFSGGGCVQMEAKALDTS 579

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1444 (513.4 bits), Expect = 7.1e-148, P = 7.1e-148
 Identities = 285/578 (49%), Positives = 393/578 (67%)

Query:     6 FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS 65
             +T+DGTVDLQG PV  S  G+WKAC+F+V YE FERMA+YGI SNL  Y+T++LH+ TV 
Sbjct:    10 YTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVK 69

Query:    66 SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPT- 124
             S  NV NW G  W+TP+LGAY+ D  +GR+ TF +S  IY  GM++LT++ ++  +KP  
Sbjct:    70 SSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPE 129

Query:   125 C-TNGI--CSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF 181
             C T  +  C K S  Q+A F+ +LY +AIG GGTKPNIST GADQFD F+P E+  K+SF
Sbjct:   130 CSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSF 189

Query:   182 FNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT 241
             FNWWMFS F G L A   LVY+Q+N+GW LGYG+PT GL  S+ IF +G+P YRHK+  T
Sbjct:   190 FNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRHKL-PT 248

Query:   242 KSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIK 301
              SP   + RV +A+FR     +  + +  HE  + +Y R G   +  +P+ R LD+A++K
Sbjct:   249 GSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFLDRASLK 308

Query:   302 HGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPS 361
              G        CT T+VE TK +L M  +  +T +PS + AQINTLFVKQGTTL+R ++ S
Sbjct:   309 TGTNHKWNL-CTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLDRKVTGS 367

Query:   362 FRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAI 421
             F IP ASL  FVTLSML+S+ +YDR FV   R+ TGNPRGIT+LQR+G+G +  ++ + +
Sbjct:   368 FSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFHILIMIV 427

Query:   422 AYAVEVRRMHVIR---VQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS 478
             A   E  R+ V     + H +G K  +P++IF LLPQ+VL+G+AD F  +  LEFFYDQ+
Sbjct:   428 ASVTERYRLKVAADHGLIHQTGVK--LPLTIFALLPQFVLMGMADSFLEVAKLEFFYDQA 485

Query:   479 PEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLM 538
             PE M+SLGT++ T+ + +GNF++SFL++ V ++T + G +GWI +NLN+  LDYYY F  
Sbjct:   486 PESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRG-RGWILNNLNESRLDYYYLFFA 544

Query:   539 VISILNLGAFFWASSRYVYKRE-TKEVNEGCVEM-ETK 574
             V++++N   F      YVY+ E T  V+   VEM ET+
Sbjct:   545 VLNLVNFVLFLVVVKFYVYRAEVTDSVDVKEVEMKETE 582

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS;RCA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0043201 "response to leucine" evidence=IEP

GO:0080052 "response to histidine" evidence=IEP

GO:0080053 "response to phenylalanine" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IGI

GO:0042937 "tripeptide transporter activity" evidence=IGI

GO:0042938 "dipeptide transport" evidence=IGI

GO:0042939 "tripeptide transport" evidence=IGI

TAIR|locus:2161428 AT5G46040 [Arabidopsis thaliana (taxid:3702)]

 Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
 Identities = 276/568 (48%), Positives = 388/568 (68%)

Query:     6 FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS 65
             +T+DGTVDL+G  V  S+TG+WKAC+F+V YE FERMA+YGI SNLV Y+T++LH+ TV 
Sbjct:    10 YTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVK 69

Query:    66 SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPT- 124
             S  NV NW G  W+TP+LGAY+AD + GR+ TF +SS IY+LGM LLT++ SL  +KP  
Sbjct:    70 SSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPK 129

Query:   125 C-TNGI--CSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF 181
             C T  +  C K S  Q+A F+ +LY +AIG GGTKPNIST GADQFD+F+P ++  K SF
Sbjct:   130 CSTANVENCEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSF 189

Query:   182 FNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT 241
             FNWWMFS F G   AT  LVY+Q+N+GW +GYG+ T GL FS+ IF +G+ +YRHK+   
Sbjct:   190 FNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLGTRLYRHKL-PM 248

Query:   242 KSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQV-VHSPA-FRCLDKAA 299
              SP   + RV +A+ R  +  +  + +  +E    +Y  + KR   +HS +  R L++A+
Sbjct:   249 GSPFTKMARVIVASLRKAREPMSSDSTRFYELPPMEY--ASKRAFPIHSTSSLRFLNRAS 306

Query:   300 IKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS 359
             +K G+    +  CT+T+VE TK +L M  +  VT +PS + AQI TLF+KQGTTL+R L+
Sbjct:   307 LKTGSTHKWRL-CTITEVEETKQMLKMLPVLFVTFVPSMMLAQIMTLFIKQGTTLDRRLT 365

Query:   360 PSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI 419
              +F IP ASL  F T SML+S+ +YDR FV FMR+ TGNPRGIT+LQR+G+G ++ ++ +
Sbjct:   366 NNFSIPPASLLGFTTFSMLVSIVIYDRVFVKFMRKLTGNPRGITLLQRMGIGMILHILIM 425

Query:   420 AIAYAVEVRRMHVIRVQHISGPKQI-VPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS 478
              IA   E  R+ V     ++    + +P+SIF LLPQYVL+G+AD F  I  LEFFYDQ+
Sbjct:   426 IIASITERYRLKVAAEHGLTHQTAVPIPLSIFTLLPQYVLMGLADAFIEIAKLEFFYDQA 485

Query:   479 PEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLM 538
             PE M+SLGT++ ++ + VG F++S L++ V ++T + G +GWI +NLN+  LD YY F  
Sbjct:   486 PESMKSLGTSYTSTSMAVGYFMSSILLSSVSQITKKQG-RGWIQNNLNESRLDNYYMFFA 544

Query:   539 VISILNLGAFFWASSRYVYKRE-TKEVN 565
             V+++LN   F      Y Y+ + T+  N
Sbjct:   545 VLNLLNFILFLVVIRFYEYRADVTQSAN 572

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009624 "response to nematode" evidence=IEP

TAIR|locus:2080235 PTR1 "peptide transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1287 (458.1 bits), Expect = 3.1e-131, P = 3.1e-131
 Identities = 252/568 (44%), Positives = 373/568 (65%)

Query:     1 MEAKG-FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL 59
             ME K  +TQDGTVD+   P    KTG WKAC F++G E  ER+A+YG+ +NLVNYL S+L
Sbjct:     1 MEEKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRL 60

Query:    60 HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK 119
             ++   ++  NV NWSG  +ITPL+GA+IAD Y+GR+WT      IYV GM LLT++AS+ 
Sbjct:    61 NQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVP 120

Query:   120 FMKP-TCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLK 178
              +KP  C    C   S SQ A F+ +LY+IA+G GG KP +S+FGADQFD+ +  E+  K
Sbjct:   121 GLKPGNCNADTCHPNS-SQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKK 179

Query:   179 VSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKI 238
              SFFNW+ FS  +GAL A   LV+IQ N+GWG G+G+PT  ++ ++  F+ GS  YR + 
Sbjct:   180 SSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQ- 238

Query:   239 RKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEF-DTQDYIRSGKRQVVHSPAFRCLDK 297
             R   SP   + +V +AAFR   +++P++ S L E  D +  I+ G R++VH+   +  DK
Sbjct:   239 RPGGSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIK-GSRKLVHTDNLKFFDK 297

Query:   298 AAIKHGNG----GDSKP--PCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQG 351
             AA++  +     G+  P   C+VTQVE  K ++ +  +W   ++ +T+++Q++T+FV QG
Sbjct:   298 AAVESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQG 357

Query:   352 TTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVG 411
              T+++ +  +F IP+ASL  F T+S+L   P+YD++ +P  R+ T N RG T LQR+G+G
Sbjct:   358 NTMDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIG 417

Query:   412 FVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLL 471
              V+ + A+  A  +EV R+  ++  +    KQI  MSIFW +PQY+L+G A+VF  IG L
Sbjct:   418 LVVSIFAMITAGVLEVVRLDYVKTHNAYDQKQI-HMSIFWQIPQYLLIGCAEVFTFIGQL 476

Query:   472 EFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLD 531
             EFFYDQ+P+ M+SL +    + + +GN+L++ LVT+V K+T +NG+ GWI DNLN  HLD
Sbjct:   477 EFFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLD 536

Query:   532 YYYGFLMVISILNLGAFFWASSRYVYKR 559
             Y++  L  +S LN   + W S RY YK+
Sbjct:   537 YFFYLLATLSFLNFLVYLWISKRYKYKK 564

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0006807 "nitrogen compound metabolic process" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0015824 "proline transport" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2041125 PTR2 "peptide transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1282 (456.3 bits), Expect = 1.0e-130, P = 1.0e-130
 Identities = 246/565 (43%), Positives = 370/565 (65%)

Query:     2 EAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE 61
             E K + +DG+VD  G P L  KTG WKAC F++G E  ER+A+YGI  NL+ YLT++LH+
Sbjct:    20 EVKLYAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQ 79

Query:    62 DTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFM 121
               VS+  NV  W G  ++TPL+GA +AD Y GR+WT    S IY +GM  LT++AS+  +
Sbjct:    80 GNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPAL 139

Query:   122 KPT-CTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
             KP  C    C   + +Q A F+  LY+IA+G GG KP +S+FGADQFDD +  ER  K S
Sbjct:   140 KPAECIGDFCPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKAS 199

Query:   181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
             FFNW+ FS  IGAL ++  LV+IQEN GWGLG+GIPT  +  ++  F+ G+P+YR + + 
Sbjct:   200 FFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFGTPLYRFQ-KP 258

Query:   241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI 300
               SP   + +V +A+FR   +++P++ + L+E   ++   +G R++ H+   + LDKAA+
Sbjct:   259 GGSPITRISQVVVASFRKSSVKVPEDATLLYETQDKNSAIAGSRKIEHTDDCQYLDKAAV 318

Query:   301 ------KHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTL 354
                   K G+  +S   CTVTQVE  K+++ M  IW   +I S ++AQ++T+FV+QG  +
Sbjct:   319 ISEEESKSGDYSNSWRLCTVTQVEELKILIRMFPIWASGIIFSAVYAQMSTMFVQQGRAM 378

Query:   355 NRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVI 414
             N  +  SF++P A+LG+F T S+++ VP+YDR+ VP  R+ TG  +G T +QR+G+G  +
Sbjct:   379 NCKIG-SFQLPPAALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFV 437

Query:   415 QVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFF 474
              V+ +A A  VE+ R+H+     +      VP+S+ W +PQY +LG A+VF  IG LEFF
Sbjct:   438 SVLCMAAAAIVEIIRLHMANDLGLVESGAPVPISVLWQIPQYFILGAAEVFYFIGQLEFF 497

Query:   475 YDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYY 534
             YDQSP+ M+SL +        +GN+L+S ++TLV   T RNG++GWI DNLN  HLDY++
Sbjct:   498 YDQSPDAMRSLCSALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFF 557

Query:   535 GFLMVISILNLGAFFWASSRYVYKR 559
               L  +S++N+  +F++++RY  K+
Sbjct:   558 WLLAGLSLVNMAVYFFSAARYKQKK 582

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA

GO:0015112 "nitrate transmembrane transporter activity" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015334 "high affinity oligopeptide transporter activity" evidence=IDA

GO:0042936 "dipeptide transporter activity" evidence=IGI;IDA

GO:0042937 "tripeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

GO:0042939 "tripeptide transport" evidence=IDA

GO:0015197 "peptide transporter activity" evidence=ISS

GO:0015833 "peptide transport" evidence=TAS

TAIR|locus:2150124 PTR5 "peptide transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1278 (454.9 bits), Expect = 2.8e-130, P = 2.8e-130
 Identities = 242/562 (43%), Positives = 371/562 (66%)

Query:     6 FTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS 65
             +T+DGT+D+  +P   +KTG WKAC F++G E  ER+A+YG+ +NL+NYL  Q++ + VS
Sbjct:     8 YTKDGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVS 67

Query:    66 SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTC 125
             + ++V+NWSG  + TPL+GA+IAD Y+GR+WT     +IY+ GM LLT++AS+  + PTC
Sbjct:    68 ASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPTC 127

Query:   126 TNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW 185
             +   C  T+  Q A  + +LY+IA+G GG KP +S+FGADQFDD +  E+  K SFFNW+
Sbjct:   128 SGETCHATA-GQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWF 186

Query:   186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPA 245
              F   +GA+ A+  LV+IQ N+GWG G G+PT  +  ++V F+ GS  YR + +   SP 
Sbjct:   187 YFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAGSNFYRLQ-KPGGSPL 245

Query:   246 RDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIK--HG 303
               +++V +A+ R  K+++P++ S L+E    +    G R++ H+      DKAA++    
Sbjct:   246 TRMLQVIVASCRKSKVKIPEDESLLYENQDAESSIIGSRKLEHTKILTFFDKAAVETESD 305

Query:   304 NGGDSKPP----CTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS 359
             N G +K      CTVTQVE  K ++ +  IW   ++ +++++Q+ T+FV QG TL++ + 
Sbjct:   306 NKGAAKSSSWKLCTVTQVEELKALIRLLPIWATGIVFASVYSQMGTVFVLQGNTLDQHMG 365

Query:   360 PSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI 419
             P+F+IP+ASL  F TLS+L   P+YD+  VPF R+ TG+ RG T LQR+G+G VI + ++
Sbjct:   366 PNFKIPSASLSLFDTLSVLFWAPVYDKLIVPFARKYTGHERGFTQLQRIGIGLVISIFSM 425

Query:   420 AIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP 479
               A  +EV R++ ++  ++   ++ +PM+IFW +PQY L+G A+VF  IG LEFFYDQ+P
Sbjct:   426 VSAGILEVARLNYVQTHNLYN-EETIPMTIFWQVPQYFLVGCAEVFTFIGQLEFFYDQAP 484

Query:   480 EDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMV 539
             + M+SL +    + I  GN+L++FLVTLV KVT   G  GWI  NLN+ HLDY++  L  
Sbjct:   485 DAMRSLCSALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAG 544

Query:   540 ISILNLGAFFWASSRYVYKRET 561
             +S LN   + W +  Y YK+ T
Sbjct:   545 LSFLNFLVYLWIAKWYTYKKTT 566

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009860 "pollen tube growth" evidence=IMP

GO:0042936 "dipeptide transporter activity" evidence=IDA

GO:0042938 "dipeptide transport" evidence=IDA

TAIR|locus:2018032 PTR6 "peptide transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1254 (446.5 bits), Expect = 9.6e-128, P = 9.6e-128
 Identities = 248/562 (44%), Positives = 370/562 (65%)

Query:     8 QDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSV 67
             +DG++D+ G P    KTG WKAC F++G E  ER+A+YGI  NL+ Y TS+LHE  VS+ 
Sbjct:    37 EDGSIDIYGNPPSKKKTGNWKACPFILGNECCERLAYYGIAKNLITYYTSELHESNVSAA 96

Query:    68 RNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTN 127
              +V  W G  +ITPL+GA IAD+Y GR+WT    S IY +GM LLT++ASL  +KP    
Sbjct:    97 SDVMIWQGTCYITPLIGAVIADSYWGRYWTIASFSAIYFIGMALLTLSASLPVLKPAACA 156

Query:   128 GI----CSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN 183
             G+    CS  +T Q A F++ LY+IA+G GG KP +S+FGADQFDD +P ER  K SFFN
Sbjct:   157 GVAAALCSPATTVQYAVFFTGLYLIALGTGGIKPCVSSFGADQFDDTDPRERVRKASFFN 216

Query:   184 WWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKS 243
             W+ FS  IG+  ++  LV++QEN+GWGLG+ IPT  +  S+  F+IG+P+YR + +   S
Sbjct:   217 WFYFSINIGSFISSTLLVWVQENVGWGLGFLIPTVFMGVSIASFFIGTPLYRFQ-KPGGS 275

Query:   244 PARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI--- 300
             P   + +V +AA+R  K+ LP++ S L+E   ++ + +G R++ H+  ++ LDKAA+   
Sbjct:   276 PITRVCQVLVAAYRKLKLNLPEDISFLYETREKNSMIAGSRKIQHTDGYKFLDKAAVISE 335

Query:   301 -KHGNGGDSKP--PCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRS 357
              +  +G  S P   CTVTQVE  K ++ M  IW   ++ S +++QI+TLFV+QG ++NR 
Sbjct:   336 YESKSGAFSNPWKLCTVTQVEEVKTLIRMFPIWASGIVYSVLYSQISTLFVQQGRSMNRI 395

Query:   358 LSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVM 417
             +  SF IP AS G F TL +L+S+P+YDR+ VPF+RR TG P+G+T LQR+G+G  + V+
Sbjct:   396 IR-SFEIPPASFGVFDTLIVLISIPIYDRFLVPFVRRFTGIPKGLTDLQRMGIGLFLSVL 454

Query:   418 AIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQ 477
             +IA A  VE  R+ + +          V MSIFW +PQY+L+G+A+VF  IG +EFFYD+
Sbjct:   455 SIAAAAIVETVRLQLAQ--------DFVAMSIFWQIPQYILMGIAEVFFFIGRVEFFYDE 506

Query:   478 SPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFL 537
             SP+ M+S+ +        VG++L+S ++TLV   T   G+ GW+ D+LN  HLDY++  L
Sbjct:   507 SPDAMRSVCSALALLNTAVGSYLSSLILTLVAYFTALGGKDGWVPDDLNKGHLDYFFWLL 566

Query:   538 MVISILNLGAFFWASSRYVYKR 559
             + + ++N+  +     ++  K+
Sbjct:   567 VSLGLVNIPVYALICVKHTKKK 588

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2041140 PTR4 "peptide transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.3e-115, Sum P(2) = 1.3e-115
 Identities = 120/278 (43%), Positives = 177/278 (63%)

Query:     2 EAKGFTQDGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE 61
             E K + +DG++D+ G P L   TG WKAC F+   E  ER+A+YGI  NL+ Y T++LHE
Sbjct:    21 EVKLYAEDGSIDIHGNPPLKQTTGNWKACPFIFANECCERLAYYGIAKNLITYFTNELHE 80

Query:    62 DTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFM 121
               VS+ R+V  W G  +ITPL+GA IAD Y GR+WT    S IY  GM+ LT++AS+  +
Sbjct:    81 TNVSAARHVMTWQGTCYITPLIGALIADAYWGRYWTIACFSAIYFTGMVALTLSASVPGL 140

Query:   122 KPT-CTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS 180
             KP  C   +C   +  Q    +S LY+IA+G GG KP +S+FGADQFD  +P ER  K S
Sbjct:   141 KPAECIGSLCPPATMVQSTVLFSGLYLIALGTGGIKPCVSSFGADQFDKTDPSERVRKAS 200

Query:   181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRK 240
             FFNW+ F+  IGA  ++  LV+IQEN GW LG+ IPT  +  + + F+ G+P+YR + + 
Sbjct:   201 FFNWFYFTINIGAFVSSTVLVWIQENYGWELGFLIPTVFMGLATMSFFFGTPLYRFQ-KP 259

Query:   241 TKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDY 278
               SP   + +V +AA+R   +++P++ ++  + +T  +
Sbjct:   260 RGSPITSVCQVLVAAYRKSNLKVPEDSTDEGDANTNPW 297

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 218/551 (39%), Positives = 335/551 (60%)

Query:    11 TVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNV 70
             TVD + +P + S +G W++  F++G E  ER A+YGI SNL+ YLT  L + T ++  NV
Sbjct:    18 TVDYRNKPAVKSSSGGWRSAGFIIGVEVAERFAYYGISSNLITYLTGPLGQSTAAAAANV 77

Query:    71 NNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGIC 130
             N WSG   + PLLGA++AD+++GRF T   +S +Y++G+ +LT++A +       +N + 
Sbjct:    78 NAWSGTASLLPLLGAFVADSFLGRFRTILAASALYIVGLGVLTLSAMIP-SDCKVSNLLS 136

Query:   131 SKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF 190
             S +   Q+  F+S+LY++A+  GG KP +  FGADQFD+  P E   K SFFNWW F   
Sbjct:   137 SCSPRFQVITFFSALYLVALAQGGHKPCVQAFGADQFDEKEPEECKAKSSFFNWWYFGMC 196

Query:   191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT-KSPARDLI 249
              G L     L YIQ+NL W LG+GIP   ++ +LV+  +G+  YR  IR+  +SP   + 
Sbjct:   197 FGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVLLLGTCTYRFSIRREDQSPFVRIG 256

Query:   250 RVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSK 309
              V +AA +N  +   D  +   E       R G      S  F  L+KA +   NG    
Sbjct:   257 NVYVAAVKNWSVSALD-VAAAEE-------RLGLVSCSSSQQFSFLNKALVAK-NGS--- 304

Query:   310 PPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASL 369
               C++ ++E  K VL +A IWL  L+ + ++AQ  T F KQG T+ RS++P ++I  A+L
Sbjct:   305 --CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATMERSITPGYKISPATL 362

Query:   370 GSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRR 429
              SF++LS+++ +P+YDR  +P  R  T  P GITMLQR+G G  +  +A+ +A  VE++R
Sbjct:   363 QSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFLSFLAMVVAALVEMKR 422

Query:   430 MHVIRVQH-ISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTT 488
             +        +  P   VPMS++WL+PQYVL G+ DVF  +GL EFFYDQ P +++S+G  
Sbjct:   423 LKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEFFYDQVPNELRSVGLA 482

Query:   489 FFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAF 548
              + S  G+GNFL+SF++++++K T ++G+  W  +NLN  HLDY+Y  L  +S + L ++
Sbjct:   483 LYLSIFGIGNFLSSFMISIIEKATSQSGQASWFANNLNQAHLDYFYWLLACLSFIGLASY 542

Query:   549 FWASSRYVYKR 559
              + +  YV KR
Sbjct:   543 LYVAKSYVSKR 553

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2084500 AT3G53960 [Arabidopsis thaliana (taxid:3702)]

 Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
 Identities = 220/559 (39%), Positives = 343/559 (61%)

Query:     9 DGTVDLQGRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVR 68
             D + D +G   L ++TG W+A  F++G E  ER++++GI +NLV YLT+ LH+D   +V+
Sbjct:    23 DSSTDSRGEIPLRAQTGAWRAALFIIGIEFSERLSYFGISTNLVVYLTTILHQDLKMAVK 82

Query:    69 NVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNG 128
             N N WSGV  + PLLG ++AD Y+GR+ T  L++ IY++G+ILLT++  +  +K  C   
Sbjct:    83 NTNYWSGVTTLMPLLGGFVADAYLGRYGTVLLATTIYLMGLILLTLSWFIPGLK-ACHED 141

Query:   129 ICSKTSTS-QIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF 187
             +C +   + +IAFF + +Y+I+IG GG KP++ +FGADQF+D +P ER +K+S+FNWW  
Sbjct:   142 MCVEPRKAHEIAFFIA-IYLISIGTGGHKPSLESFGADQFEDGHPEERKMKMSYFNWWNA 200

Query:   188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARD 247
                 G L A   +VYI++ +GWG+   I T  +  S  IF IG P YR++   + SP   
Sbjct:   201 GLCAGILTAVTVIVYIEDRIGWGVASIILTIVMATSFFIFRIGKPFYRYRA-PSGSPLTP 259

Query:   248 LIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGD 307
             +++V +AA   R +  P + S LHE   ++Y +   R +  S   + LDKAA+      +
Sbjct:   260 MLQVFVAAIAKRNLPCPSDSSLLHELTNEEYTKG--RLLSSSKNLKFLDKAAVIEDRNEN 317

Query:   308 SKP----P---CTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLS- 359
             +K     P    TVT+VE  KL++ M  IW  TL       Q +TLF+KQ   ++R ++ 
Sbjct:   318 TKAEKQSPWRLATVTKVEEVKLLINMIPIWFFTLAFGVCATQSSTLFIKQAIIMDRHITG 377

Query:   360 PSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI 419
              SF +P ASL S + LS++++V +Y++  VP +RR TGN RGI++LQR+GVG V  + A+
Sbjct:   378 TSFIVPPASLFSLIALSIIITVTIYEKLLVPLLRRATGNERGISILQRIGVGMVFSLFAM 437

Query:   420 AIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP 479
              IA  +E +R+   +  H++   + + +S  WL PQ+++LGVAD F  +GL E+FYDQ P
Sbjct:   438 IIAALIEKKRLDYAKEHHMN---KTMTLSAIWLAPQFLVLGVADAFTLVGLQEYFYDQVP 494

Query:   480 EDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMV 539
             + M+SLG  F+ S +G  +F+N+ L+T+ D +      KGW G +LN   LD +Y  L  
Sbjct:   495 DSMRSLGIAFYLSVLGAASFVNNLLITVSDHLAEEISGKGWFGKDLNSSRLDRFYWMLAA 554

Query:   540 ISILNLGAFFWASSRYVYK 558
             ++  N+  F   + RY YK
Sbjct:   555 LTAANICCFVIVAMRYTYK 573

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006857 "oligopeptide transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZR7	PTR30_ARATH	No assigned EC number	0.7431	0.9811	0.9828	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029402001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (585 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	584
pfam00854	372	pfam00854, PTR2, POT family	1e-108
COG3104	498	COG3104, PTR2, Dipeptide/tripeptide permease [Amin	6e-26
PRK15462	493	PRK15462, PRK15462, dipeptide/tripeptide permease	1e-16
TIGR00926	641	TIGR00926, 2A1704, Peptide:H+ symporter (also tran	9e-15
TIGR00924	475	TIGR00924, yjdL_sub1_fam, amino acid/peptide trans	3e-13
PRK09584	500	PRK09584, tppB, putative tripeptide transporter pe	6e-07
PRK10207	489	PRK10207, PRK10207, dipeptide/tripeptide permease	6e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.003

>gnl|CDD|216153 pfam00854, PTR2, POT family

 Score =  328 bits (844), Expect = e-108
 Identities = 138/401 (34%), Positives = 202/401 (50%), Gaps = 30/401 (7%)

Query: 95  FWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGG 154
           F T  L S+IY +G +LLT+ A            I    S  Q+A FY  LY+IA+G GG
Sbjct: 1   FKTILLGSIIYAIGHVLLTLGA------------IPPSLSPVQVALFYIGLYLIALGTGG 48

Query: 155 TKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYG 214
            KPN+S FGADQFD+     R+    FF+W+ FS   G+L AT+   Y+Q+N+G+ LG+G
Sbjct: 49  IKPNVSAFGADQFDETQDPRRD---GFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFG 105

Query: 215 IPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIR-VPIAAFRNRKIQLPDNPSELHEF 273
           +P  G+L +L++F +GS  Y+ K     SP    I  +  AA +NRK+QLP +   L+  
Sbjct: 106 LPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIITAAGKNRKLQLPKDSHWLYWA 165

Query: 274 DTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVT 333
             +   RS  +  VH+     +     K               V   + +L M  IW   
Sbjct: 166 LEKYNKRSISQTKVHTRVAV-IFIPLPKF-----WALFDQQGSVWLLQAILLMLPIWAFW 219

Query: 334 LIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMR 393
           ++P  +W Q+ TL V+Q  T++R + P F IP AS  SF  L++L+ +P+ D    P +R
Sbjct: 220 ILPDQMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLLR 279

Query: 394 RRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLL 453
                 RG+T+ QR G+G  I ++A  +A  VE +R        ++ P   VP+ I W L
Sbjct: 280 ----LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTSPGWTVPLFILWSL 335

Query: 454 PQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGI 494
           P+  + GV       G LEF  D  P  M SL T    +  
Sbjct: 336 PELFISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372

The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372

>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]

 Score =  111 bits (279), Expect = 6e-26
 Identities = 89/493 (18%), Positives = 179/493 (36%), Gaps = 72/493 (14%)

Query: 28  KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE----DTVSSVRNVNNWSGVVWITPLL 83
           +    +   E +ER ++YG+++ L+ YL  QL +    D   +    + +  +V++TP++
Sbjct: 21  RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80

Query: 84  GAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYS 143
           G ++AD  +G   T  L +++  +G ++L +                  +S S     Y 
Sbjct: 81  GGWLADRVLGTRRTIVLGAILMAIGHLVLAI------------------SSVSGPGGLYI 122

Query: 144 SLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYI 203
            L +I +G G  KPNIS+   + +   +P     +   F  +     IG+L A +    +
Sbjct: 123 GLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLL 178

Query: 204 QENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARD---LIRVPIAAFRNRK 260
             N GW +G+G+   G++  LVIF +G    +               L+ V         
Sbjct: 179 AINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVV--- 235

Query: 261 IQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNG----GDSKPPCTVTQ 316
           + L    + L   +T   +               L   +I             P      
Sbjct: 236 MILAALLTLLLNQNTFSGV---------------LLVISILIAIIYFAEAFRSPKVF--- 277

Query: 317 VEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTT-LNRSLSPSFRIPAASLGSFVTL 375
            +  + +L    ++L  +I   ++ Q+ +         +NR +   F +P A   S    
Sbjct: 278 -DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPF 335

Query: 376 SMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRV 435
            ++L  P+    +    R      +  +   +  +G ++  +   I     +        
Sbjct: 336 FIILFSPILAALWTKLGRGN----KQPSTPIKFALGLILAGLGFLILLLAGI-------- 383

Query: 436 QHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIG 495
               GP  +V +   WL+  YVL    ++F +   L      +P  ++S     +   + 
Sbjct: 384 -WFGGPSGLVSVW--WLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVA 440

Query: 496 VGNFLNSFLVTLV 508
            G  L   +  L 
Sbjct: 441 AGQTLGGQVAGLT 453

Length = 498

>gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional

 Score = 82.7 bits (204), Expect = 1e-16
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 27/211 (12%)

Query: 28  KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYI 87
           +A  ++V  + +E  +FYG+++ L+ YLT+QL  D   +    + +  +V++TP+LG ++
Sbjct: 9   RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68

Query: 88  ADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIA--FFYSSL 145
           AD  +G      L +L+  +G ++L                       S+I   F Y SL
Sbjct: 69  ADKVLGNRMAVMLGALLMAIGHVVL---------------------GASEIHPSFLYLSL 107

Query: 146 YIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE 205
            II  G G  K N+S    + ++  +P     +   F+    +  +G++ A +   Y QE
Sbjct: 108 AIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQE 163

Query: 206 NLGWGLGYGIPTAGLLFSLVIFYIGSPIYRH 236
              W +G+G+   G++  LVIF  G+  + H
Sbjct: 164 EYSWAMGFGLAAVGMIAGLVIFLCGNRHFTH 194

Length = 493

>gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

 Score = 77.1 bits (190), Expect = 9e-15
 Identities = 84/396 (21%), Positives = 170/396 (42%), Gaps = 67/396 (16%)

Query: 44  FYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL 103
           +YG+++ LV YL + L  +  ++    + ++ + ++TPL+GA IAD+++G+F T    SL
Sbjct: 3   YYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYLSL 62

Query: 104 IYVLGMILLTMAA--SLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNIST 161
           +YV+G  L ++ A  SL                         SL  +A+ A GT      
Sbjct: 63  VYVVGHALASLGAVPSLGHPLHDA-----------------LSLVGLALIALGTGGIKPC 105

Query: 162 FGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLG-------WGLGYG 214
             A   D F   + +L+  FF+++ F+   G+L +T+    ++ ++G       + L +G
Sbjct: 106 VSAFGGDQFEERQLSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165

Query: 215 IPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFD 274
           +P   +  +L++F +GS +Y+ K       ++ +++  + A + R               
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVGNIVSK-VMKCIVFALKKR--------------- 209

Query: 275 TQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTL 334
                   + +    P    LD AA K+           +  +  TK +L +  +++   
Sbjct: 210 -------FRTRSEDWPRLHWLDWAAPKYL----------IRMIRSTKRLLRVLFLFIPLP 252

Query: 335 IPSTIWAQINTLFVKQGTTLNRSLSPS--FRIPAASLGSFVTLSMLLSVPMYDRYFVPFM 392
           +    WA  +    +      R       F I    + +   L +L+ VP++D Y V   
Sbjct: 253 M---FWALFDQQGSRWTLQATRMDGDVGLFPIQPDQMQAVNPLLVLILVPIFD-YVVYPA 308

Query: 393 RRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVR 428
             + G     T L+++ VG ++  +A A+A  ++ +
Sbjct: 309 LAKCGTRF--TSLRKMAVGMLLAALAFAVAALLQNK 342

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641

>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial

 Score = 71.8 bits (176), Expect = 3e-13
 Identities = 46/202 (22%), Positives = 82/202 (40%), Gaps = 25/202 (12%)

Query: 37  EAFERMAFYGIQSNLVNYLTSQ--LHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGR 94
           E +ER ++YG+Q  L  YL  Q  L      +      +S +V++   +G +  D   G 
Sbjct: 19  ELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGT 78

Query: 95  FWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGG 154
             T  L  ++ +LG  +L M+                          +  L  IA+G+G 
Sbjct: 79  KKTMVLGGIVLMLGHFMLAMSIYP--------------------DLIFYGLGTIAVGSGL 118

Query: 155 TKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYG 214
            K N S+     ++  +   R+   + F     S  IG+  + L    I EN G+ +G+ 
Sbjct: 119 FKANPSSMVGKLYERGDMPRRDGGFTLF---YMSINIGSFISPLLAGVIAENYGYHVGFN 175

Query: 215 IPTAGLLFSLVIFYIGSPIYRH 236
           +   G++  L+ F+ G  + R 
Sbjct: 176 LAAVGMVIGLLTFFAGRHMLRD 197

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475

>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 23/191 (12%)

Query: 37  EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFW 96
           E +ER  +YG+Q  +  YL  QL      S+   +++S +V+    +G ++ D  +G   
Sbjct: 30  ELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR 89

Query: 97  TFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTK 156
              L +++  +G  L+                     S       Y  +  IA+G G  K
Sbjct: 90  VIMLGAIVLAIGYALVAW-------------------SGHDAGIVYMGMATIAVGNGLFK 130

Query: 157 PNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIP 216
            N S+  +  ++  +P    L  +F  ++M S  IG+  + L   ++    GW + + + 
Sbjct: 131 ANPSSLLSTCYEKDDP---RLDGAFTMYYM-SINIGSFFSMLATPWLAAKYGWSVAFALS 186

Query: 217 TAGLLFSLVIF 227
             G+L ++V F
Sbjct: 187 VVGMLITVVNF 197

Length = 500

>gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 27/207 (13%)

Query: 37  EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFW 96
           E +ER  +YG+Q  L  +   QL      +      ++ +V+    +G Y+ D  +G   
Sbjct: 23  ELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR 82

Query: 97  TFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTK 156
           T  L +++  +G  +  M+     +KP                  + +L  IA+G G  K
Sbjct: 83  TIVLGAIVLAIGYFMTGMS----LLKPD---------------LIFIALGTIAVGNGLFK 123

Query: 157 PNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIP 216
            N ++  +  +    P +  L  +F  ++M S  IG+L +      I +  G+ + Y + 
Sbjct: 124 ANPASLLSKCYP---PKDPRLDGAFTLFYM-SINIGSLISLSLAPVIADKFGYSVTYNLC 179

Query: 217 TAGLLFSLVIFYIGSPIYRHKIRKTKS 243
            AGL+ +L++++      R  ++   S
Sbjct: 180 GAGLIIALLVYF----ACRGMVKDIGS 202

Length = 489

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 35/185 (18%), Positives = 63/185 (34%), Gaps = 27/185 (14%)

Query: 45  YGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI 104
            G+ S  +  L   L      +   V+ +S    +  LL  Y++D + GR     L  L+
Sbjct: 15  RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLL 73

Query: 105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGA 164
           + LG +LL  A+S                    +       +++ +G G   P  +   A
Sbjct: 74  FALGSLLLAFASS--------------------LWLLLVGRFLLGLGGGALYPAAAALIA 113

Query: 165 DQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSL 224
           + F          +      +     +GAL   L    + E+LGW   + I     L   
Sbjct: 114 EWF------PPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLA 167

Query: 225 VIFYI 229
           ++   
Sbjct: 168 LLLLF 172

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	584
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	100.0
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	100.0
PRK10207	489	dipeptide/tripeptide permease B; Provisional	100.0
PRK15462	493	dipeptide/tripeptide permease D; Provisional	100.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	100.0
PRK09584	500	tppB putative tripeptide transporter permease; Rev	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	99.93
PRK03545	390	putative arabinose transporter; Provisional	99.93
PRK12382	392	putative transporter; Provisional	99.93
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.92
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.92
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.91
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.91
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.91
PRK10489	417	enterobactin exporter EntS; Provisional	99.91
PLN00028	476	nitrate transmembrane transporter; Provisional	99.91
PRK10504	471	putative transporter; Provisional	99.91
PRK11663	434	regulatory protein UhpC; Provisional	99.91
PRK10054	395	putative transporter; Provisional	99.91
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.91
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.91
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.91
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.9
TIGR00893	399	2A0114 d-galactonate transporter.	99.9
PRK09705	393	cynX putative cyanate transporter; Provisional	99.9
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.9
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.9
TIGR00900	365	2A0121 H+ Antiporter protein.	99.9
PRK09874	408	drug efflux system protein MdtG; Provisional	99.9
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.9
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.9
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.89
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.89
TIGR00891	405	2A0112 putative sialic acid transporter.	99.89
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.89
PRK10642	490	proline/glycine betaine transporter; Provisional	99.89
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.89
PRK10091	382	MFS transport protein AraJ; Provisional	99.89
PRK03699	394	putative transporter; Provisional	99.89
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.88
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.88
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.88
PRK12307	426	putative sialic acid transporter; Provisional	99.88
TIGR00895	398	2A0115 benzoate transport.	99.88
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.88
PRK09952	438	shikimate transporter; Provisional	99.88
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.88
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.87
TIGR00898	505	2A0119 cation transport protein.	99.87
PRK03893	496	putative sialic acid transporter; Provisional	99.87
PRK15011	393	sugar efflux transporter B; Provisional	99.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.87
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.87
PRK09528	420	lacY galactoside permease; Reviewed	99.87
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.86
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.86
KOG2532	466	consensus Permease of the major facilitator superf	99.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.86
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.86
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.86
PRK15075	434	citrate-proton symporter; Provisional	99.85
KOG0569	485	consensus Permease of the major facilitator superf	99.85
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.85
PRK11043	401	putative transporter; Provisional	99.84
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.84
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.84
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.84
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.83
PRK10133	438	L-fucose transporter; Provisional	99.83
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.83
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.83
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.83
KOG0254	513	consensus Predicted transporter (major facilitator	99.83
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.82
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.82
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	99.81
PRK11010	491	ampG muropeptide transporter; Validated	99.81
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.8
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.79
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.78
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.78
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.78
KOG2615	451	consensus Permease of the major facilitator superf	99.75
TIGR00901	356	2A0125 AmpG-related permease.	99.74
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.73
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.73
PRK11902	402	ampG muropeptide transporter; Reviewed	99.73
TIGR00805	633	oat sodium-independent organic anion transporter.	99.73
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.72
PRK09669	444	putative symporter YagG; Provisional	99.71
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.71
PRK10429	473	melibiose:sodium symporter; Provisional	99.7
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.7
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.69
PTZ00207	591	hypothetical protein; Provisional	99.69
PRK09848	448	glucuronide transporter; Provisional	99.68
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.68
PF13347	428	MFS_2: MFS/sugar transport protein	99.68
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.67
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.65
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.65
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.64
KOG2533	495	consensus Permease of the major facilitator superf	99.62
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.57
PRK11462	460	putative transporter; Provisional	99.57
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.57
COG2211	467	MelB Na+/melibiose symporter and related transport	99.52
PRK15011	393	sugar efflux transporter B; Provisional	99.46
PRK10642	490	proline/glycine betaine transporter; Provisional	99.45
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.43
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.4
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.36
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.36
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.35
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.35
PRK05122	399	major facilitator superfamily transporter; Provisi	99.35
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.34
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.33
PRK03699	394	putative transporter; Provisional	99.33
PRK09952	438	shikimate transporter; Provisional	99.32
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.31
PRK03893	496	putative sialic acid transporter; Provisional	99.3
PRK09874	408	drug efflux system protein MdtG; Provisional	99.29
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.29
PRK09528	420	lacY galactoside permease; Reviewed	99.28
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.28
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.26
PRK09705	393	cynX putative cyanate transporter; Provisional	99.26
PRK03545	390	putative arabinose transporter; Provisional	99.26
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.25
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.24
PRK10489	417	enterobactin exporter EntS; Provisional	99.24
TIGR00893	399	2A0114 d-galactonate transporter.	99.23
PRK12382	392	putative transporter; Provisional	99.23
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.22
KOG3626	735	consensus Organic anion transporter [Secondary met	99.22
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.2
PRK15075	434	citrate-proton symporter; Provisional	99.2
KOG2563	480	consensus Permease of the major facilitator superf	99.2
TIGR00891	405	2A0112 putative sialic acid transporter.	99.19
PLN00028	476	nitrate transmembrane transporter; Provisional	99.19
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.18
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.18
PRK03633	381	putative MFS family transporter protein; Provision	99.16
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.15
PRK11663	434	regulatory protein UhpC; Provisional	99.14
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.13
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.11
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.11
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.1
PRK11010	491	ampG muropeptide transporter; Validated	99.1
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.08
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.06
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.06
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.05
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.05
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.05
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.04
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.03
PRK10504	471	putative transporter; Provisional	99.03
PRK10091	382	MFS transport protein AraJ; Provisional	99.02
TIGR00900	365	2A0121 H+ Antiporter protein.	99.02
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.01
PRK12307	426	putative sialic acid transporter; Provisional	99.01
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.0
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.99
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.98
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.97
PRK10133	438	L-fucose transporter; Provisional	98.96
PRK10054	395	putative transporter; Provisional	98.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.94
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.94
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.93
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.93
TIGR00895	398	2A0115 benzoate transport.	98.92
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.92
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.91
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.9
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.88
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.86
PF13347	428	MFS_2: MFS/sugar transport protein	98.86
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.85
PRK11902	402	ampG muropeptide transporter; Reviewed	98.85
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.83
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.81
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.81
PRK09848	448	glucuronide transporter; Provisional	98.81
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.79
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.77
PRK10429	473	melibiose:sodium symporter; Provisional	98.77
TIGR00898	505	2A0119 cation transport protein.	98.76
KOG2532	466	consensus Permease of the major facilitator superf	98.73
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.71
PRK11043	401	putative transporter; Provisional	98.7
TIGR00901	356	2A0125 AmpG-related permease.	98.69
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.67
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.67
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.65
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.64
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.64
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.59
KOG0569	485	consensus Permease of the major facilitator superf	98.58
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.57
PRK09669	444	putative symporter YagG; Provisional	98.57
KOG3762	618	consensus Predicted transporter [General function	98.55
COG2211	467	MelB Na+/melibiose symporter and related transport	98.53
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.48
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.45
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.42
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.36
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.32
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.29
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.28
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.27
PRK11462	460	putative transporter; Provisional	98.25
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.24
KOG0637	498	consensus Sucrose transporter and related proteins	98.24
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.18
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.16
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.15
COG0477	338	ProP Permeases of the major facilitator superfamil	98.14
PF12832	77	MFS_1_like: MFS_1 like family	98.06
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.06
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.05
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.05
KOG3762	618	consensus Predicted transporter [General function	98.03
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.97
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.91
KOG2533	495	consensus Permease of the major facilitator superf	97.74
TIGR00788	468	fbt folate/biopterin transporter. The only functio	97.73
TIGR00805	633	oat sodium-independent organic anion transporter.	97.67
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.63
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.54
KOG0254	513	consensus Predicted transporter (major facilitator	97.53
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.49
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.23
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.22
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.21
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.07
PTZ00207	591	hypothetical protein; Provisional	96.95
KOG2563	480	consensus Permease of the major facilitator superf	96.9
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.85
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.83
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	96.8
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.5
KOG2615	451	consensus Permease of the major facilitator superf	96.47
PRK03612	521	spermidine synthase; Provisional	96.41
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.37
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.26
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.25
KOG3626	735	consensus Organic anion transporter [Secondary met	96.12
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	95.67
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.91
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.77
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.43
KOG3880	409	consensus Predicted small molecule transporter inv	93.74
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	93.41
KOG3098	461	consensus Uncharacterized conserved protein [Funct	93.23
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	92.97
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	92.9
KOG0637	498	consensus Sucrose transporter and related proteins	92.69
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	91.32
KOG3097	390	consensus Predicted membrane protein [Function unk	90.71
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	90.06
KOG3810	433	consensus Micronutrient transporters (folate trans	89.32
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	89.27
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	88.93
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.34
COG3202	509	ATP/ADP translocase [Energy production and convers	87.63
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	85.31
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	82.74
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	82.74

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-44  Score=390.68  Aligned_cols=536  Identities=45%  Similarity=0.789  Sum_probs=474.4

Q ss_pred             ccccCCCCccc---cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHh
Q 007932           12 VDLQGRPVLSS---KTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIA   88 (584)
Q Consensus        12 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~la   88 (584)
                      .++..++....   ++..|+.+.+.+..+.+|+.++|++...+..|+++.+|.+...+.-.++.+.....+.++++++++
T Consensus        18 ~d~~~~~~~~~~~~~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~la   97 (571)
T KOG1237|consen   18 VDYRGPLLGSSIAFKTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLA   97 (571)
T ss_pred             eeccCCcccccccceechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34444444444   778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC-C----CCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccc
Q 007932           89 DTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPT-C----TNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFG  163 (584)
Q Consensus        89 D~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~  163 (584)
                      |.|.||.+++.++.++..+|..++.+.+.++.+.++ |    ....|+.++......++.++.+.++|.|+..|+..+..
T Consensus        98 D~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fG  177 (571)
T KOG1237|consen   98 DSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFG  177 (571)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhc
Confidence            999999999999999999999999999999988776 3    23378888888889999999999999999999999999


Q ss_pred             cccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCC
Q 007932          164 ADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKS  243 (584)
Q Consensus       164 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (584)
                      +|++++..+.+++.+.+.++|+++..++|..++..+..+++++.+|.+.|.++.+..+++++++....+.|++.+|.+ +
T Consensus       178 adQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g-s  256 (571)
T KOG1237|consen  178 ADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG-S  256 (571)
T ss_pred             ccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC-C
Confidence            999997777777778899999999999999999999999999999999999999999999999999999999999998 8


Q ss_pred             hhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCC------CCCCCCCcccccc
Q 007932          244 PARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGN------GGDSKPPCTVTQV  317 (584)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~  317 (584)
                      |..+..+++..+.++++...+.+++.. +.+.     .+.....+.+++++++++++..+.      ...+|+.|+.+++
T Consensus       257 p~t~i~~Vlvaa~~k~~~~~~~~~~~~-~~~~-----~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~V  330 (571)
T KOG1237|consen  257 PKTRIGQVLVAAAFKRKAVVSLDPEEL-YYDC-----TDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQV  330 (571)
T ss_pred             chhHHHHHHHHHHHHHhccCCCcchhc-cccc-----cccccccCCcccchhhHhhccCCcccccccccCCccCCCceeh
Confidence            999999999999999887766654333 1111     111222335678889988888653      2367999999999


Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccC
Q 007932          318 EGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTG  397 (584)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~  397 (584)
                      |+.|.+++...++...+.+++.+.|+.+++..|...++++.++++.+|++.++.+..+..++..|+.++...|+.||..+
T Consensus       331 ee~K~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~  410 (571)
T KOG1237|consen  331 EEVKAVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTG  410 (571)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcC
Confidence            99999999999999999999999999999999999999999855999999999999999999999999999999999988


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeecc
Q 007932          398 NPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQ  477 (584)
Q Consensus       398 ~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~  477 (584)
                      ++.+++.++++.+|+++..+++.+.+.++..+.+.+..    ..++.++++++|++++|++.|++|.+..++..++.+++
T Consensus       411 ~~~~~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~----~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~q  486 (571)
T KOG1237|consen  411 NPFGITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVS----LLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQ  486 (571)
T ss_pred             CCCCCChhheeeccchHHHHHHHHHHHHHHHHhhhhhh----ccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhh
Confidence            88788999999999999999999999999888776644    12234689999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccC-CCCCccchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 007932          478 SPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIG-DNLNDCHLDYYYGFLMVISILNLGAFFWASSRYV  556 (584)
Q Consensus       478 ~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~-~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~  556 (584)
                      +|++||+.+++++.+...+|+.++..+...+....+.  ..+|+. +++|.++.+++||+++....++.+.+.++.++++
T Consensus       487 aP~sMkS~~~al~l~t~a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~  564 (571)
T KOG1237|consen  487 APESMKSVATALWLLTVAVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYD  564 (571)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeee
Confidence            9999999999999999999999999999998876644  458999 8999999999999999999999888777777666


Q ss_pred             cccc
Q 007932          557 YKRE  560 (584)
Q Consensus       557 ~~~~  560 (584)
                      +++.
T Consensus       565 ~~~~  568 (571)
T KOG1237|consen  565 YKDD  568 (571)
T ss_pred             eccc
Confidence            5543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-36  Score=310.93  Aligned_cols=464  Identities=19%  Similarity=0.307  Sum_probs=349.2

Q ss_pred             CCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc
Q 007932           18 PVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH----EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG   93 (584)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G   93 (584)
                      +......+++|.++.++.++++|+++||++...+..|+..+++    +|.+++..+.+.|..-.++.++++||++||++|
T Consensus        11 ~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG   90 (498)
T COG3104          11 TLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG   90 (498)
T ss_pred             ccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3344455689999999999999999999999999999998888    999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChh
Q 007932           94 RFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPY  173 (584)
Q Consensus        94 rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~  173 (584)
                      +||++..|.+++++|.++++...                  ......++++..+.++|.|..+|+++++++|++|++++ 
T Consensus        91 ~~~tI~lGail~~iGh~~L~~~~------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp-  151 (498)
T COG3104          91 TRRTIVLGAILMAIGHLVLAISS------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDP-  151 (498)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccc------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCc-
Confidence            99999999999999999999762                  02355699999999999999999999999999999887 


Q ss_pred             hhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCC-CChhh--h---
Q 007932          174 ERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT-KSPAR--D---  247 (584)
Q Consensus       174 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~---  247 (584)
                         ||-..++++|++.|+|+.++|++.+++.++.||+..|.+.++...++++.++.+++......... +.+..  .   
T Consensus       152 ---rrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~  228 (498)
T COG3104         152 ---RRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP  228 (498)
T ss_pred             ---ccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence               79999999999999999999999999999999999999999999999988888776554332111 01111  0   


Q ss_pred             -hHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcch-hhhHHHHhcCCCCCCCC--CcccccchhhHHH
Q 007932          248 -LIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFR-CLDKAAIKHGNGGDSKP--PCTVTQVEGTKLV  323 (584)
Q Consensus       248 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  323 (584)
                       ...........-          +......             +..+ .+....+....+ ...+  ...... +++||.
T Consensus       229 ~~~~~~~~~~~~~----------~~~~l~~-------------~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~-~er~r~  283 (498)
T COG3104         229 VLGGLVVMILAAL----------LTLLLNQ-------------NTFSGVLLVISILIAII-YFAEAFRSPKVF-DERRRL  283 (498)
T ss_pred             hHHHHHHHHHHHH----------HHHHHHH-------------HHHHHHHHHHHHHHHHH-HHHHHhccCccH-HHHHHH
Confidence             000100000000          0000000             0000 000000000000 0000  001122 678899


Q ss_pred             HHHHHHHHHhhhhhhhhccccceEEEecc-cccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCC
Q 007932          324 LGMALIWLVTLIPSTIWAQINTLFVKQGT-TLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGI  402 (584)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~  402 (584)
                      +..+.+++..++||+++.|+.+.+..+.. ..++... ++.+++++++++|++..++.+|+.++++.++.++.    +.+
T Consensus       284 ~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~-g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~p  358 (498)
T COG3104         284 LAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIF-GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQP  358 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHHHHHhhccccc-ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCC
Confidence            99999999999999999999976655553 3444433 48899999999999999999999999999987764    234


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchh
Q 007932          403 TMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDM  482 (584)
Q Consensus       403 ~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~  482 (584)
                      +...++.+|+.+++.+++++.......-+.           ....+.+|+++.|++.++||.+..|...+++.+.+|+.+
T Consensus       359 s~~~KFalGl~l~g~~fl~l~~~~~~~~~~-----------~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~  427 (498)
T COG3104         359 STPIKFALGLILAGLGFLILLLAGIWFGGP-----------SGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPAL  427 (498)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHhhcCC-----------CCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH
Confidence            788889999999999998887763221110           123788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932          483 QSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSR  554 (584)
Q Consensus       483 rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~  554 (584)
                      .+..++++.+....|+.++..+.+....          ..+..+......+|+.++...++..+.+....+.
T Consensus       428 ~s~~ma~wfLt~a~~~~l~g~va~~~~~----------~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~  489 (498)
T COG3104         428 KSFIMAMWFLTVAAGQTLGGQVAGLTAV----------TDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPK  489 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhhceecccccc----------cchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999999888888777653110          0001112233456888888887776665555443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=100.00  E-value=3.7e-35  Score=317.59  Aligned_cols=458  Identities=14%  Similarity=0.216  Sum_probs=325.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc-ccchhHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADT-YIGRFWTFTLSS  102 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grk~~~~~~~  102 (584)
                      +++||.++.+++.+++|++++|++.++++.|+++++|++..+++++.+.+....++.++++|+++|| + ||||+++++.
T Consensus        10 ~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~-G~r~~~~~g~   88 (489)
T PRK10207         10 LQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL-GTKRTIVLGA   88 (489)
T ss_pred             hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhcc-chHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999999999999 6 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      +++.++++++.++.+                   ....++++|.++|+|.|...|+..++++|++|++++    +|.+++
T Consensus        89 ~~~~~g~~~~~~~~~-------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~----~~~~~~  145 (489)
T PRK10207         89 IVLAIGYFMTGMSLL-------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDP----RLDGAF  145 (489)
T ss_pred             HHHHHHHHHHHHhcc-------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCch----hhhcch
Confidence            999999999988631                   123466899999999999999999999999998753    468899


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecC--CCCCChhhhhHHHHH-------
Q 007932          183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKI--RKTKSPARDLIRVPI-------  253 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------  253 (584)
                      ++++++.|+|..+||.+++++.++.||++.|++.++..+++++.+...++.+++..  |++ .+. +..+...       
T Consensus       146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-d~~~~~l~~~~~~~  223 (489)
T PRK10207        146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDH-KPM-SFSKLLLVLLGSVV  223 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCc-cch-hhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999987766666655555554443321  211 111 1111100       


Q ss_pred             HHHh-hccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 007932          254 AAFR-NRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLV  332 (584)
Q Consensus       254 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (584)
                      .... ....... +...                       ..+......... .+.++....+ ...+++.+....++..
T Consensus       224 ~~~~~~~~~~~~-~~~~-----------------------~~~~~~~~i~~~-~f~~~~~~~~-~~~r~r~~~~~~l~~~  277 (489)
T PRK10207        224 MIFVCAWLMHNV-EVAN-----------------------LVLIVLSIVVTI-IFFREAFKLD-KTGRNKMFVAFVLMLE  277 (489)
T ss_pred             HHHHHHHHHhhh-hHHH-----------------------HHHHHHHHHHHH-HHHHHHhcCC-HHHHHHHHHHHHHHHH
Confidence            0000 0000000 0000                       000000000000 0000000011 1234556666666777


Q ss_pred             hhhhhhhhccccceEEEecc-cccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHH
Q 007932          333 TLIPSTIWAQINTLFVKQGT-TLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVG  411 (584)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig  411 (584)
                      ...+|..+.|....+..+.. ..++... ++..+++++++++++..++.+|+.+++.+++.+|    ...+++..++.+|
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~-G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r----~~~~~~~~k~~~G  352 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEIL-GFSINPVSFQALNPFWVVVASPILAGIYTHLGSK----GKDLSMPMKFTLG  352 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhcccccc-ceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhC----CCCCCcHHHHHHH
Confidence            88888888888654333332 3344443 5777888999999999999999988877666555    3345788899999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHH
Q 007932          412 FVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFT  491 (584)
Q Consensus       412 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~  491 (584)
                      +++.+++++.+........+   .        ....+.+|+++.+++.++||.+..|+.++++.+.+|++++|.++|+++
T Consensus       353 ~~l~~~~~~~~~~~~~~~~~---~--------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~  421 (489)
T PRK10207        353 MFLCSLGFLTAAAAGMWFAD---A--------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWF  421 (489)
T ss_pred             HHHHHHHHHHHHHHHHhhcC---C--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHH
Confidence            99999888765433211000   0        112567889999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCC-CccchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 007932          492 SGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNL-NDCHLDYYYGFLMVISILNLGAFFWASSRYV  556 (584)
Q Consensus       492 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~-~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~  556 (584)
                      +..++|+.++..+.........       ..|+. ..+++.++|..++++++++.++++...+..+
T Consensus       422 l~~~ig~~lg~~l~~~~~~~~~-------~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~  480 (489)
T PRK10207        422 LTQAAAFLLGGYVATFTAVPDN-------ITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLN  480 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccccc-------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888765531000       00111 1234567788888888888777766655443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=100.00  E-value=1.4e-33  Score=301.20  Aligned_cols=462  Identities=17%  Similarity=0.241  Sum_probs=323.5

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      +++|.++.+++.++++++++|++..+++.|+++++|+++.+++.+.+.+.....++++++|+++||++||||+++++.++
T Consensus         6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999977999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      .+++.+++....                   .+...++++..+..+|.|...++.+++++|++|++++    +|.+++++
T Consensus        86 ~~lg~lll~~~~-------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~----~R~sgf~i  142 (493)
T PRK15462         86 MAIGHVVLGASE-------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSL  142 (493)
T ss_pred             HHHHHHHHHHhh-------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCc----cccceehH
Confidence            999987665431                   1122345555666788888889999999999998643    69999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhh--hhHHHH-----HHH--
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPAR--DLIRVP-----IAA--  255 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~--  255 (584)
                      +++..|+|+.++|.+++++.+.+||++.|.+.++..+++.+.++...+.+.+....++.+..  +.....     ...  
T Consensus       143 ~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (493)
T PRK15462        143 MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVA  222 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998777766666655555443332111101110  000000     000  


Q ss_pred             ---HhhccccCCCCCCCccccccccccccccccccCCCcchh-hhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHH
Q 007932          256 ---FRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRC-LDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWL  331 (584)
Q Consensus       256 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (584)
                         +......                          .+.... +......... -..+-.......+++||+.....++.
T Consensus       223 ~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~er~r~~~~~~l~~  275 (493)
T PRK15462        223 TPALITVLFW--------------------------KEWSVYALIVATIIGLG-VLAKIYRKAENQKQRKELGLIVTLTF  275 (493)
T ss_pred             HHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHhhHHHHHHHHH
Confidence               0000000                          000000 0000000000 00000000012356788888999999


Q ss_pred             Hhhhhhhhhccccce-EEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHH
Q 007932          332 VTLIPSTIWAQINTL-FVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGV  410 (584)
Q Consensus       332 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~i  410 (584)
                      ..+.||..++|.++. .++...+.|+.+. ++.+|+.+++++|++..++.+|+..++..++.+|.    +.++...++.+
T Consensus       276 ~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~-g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~----~~~s~~~Kfa~  350 (493)
T PRK15462        276 FSMLFWAFAQQGGSSISLYIDRFVNRDMF-GYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGN----RTVRIWGKFAL  350 (493)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccchhc-ceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCC----CCCCcHHHHHH
Confidence            999999999999853 3333456777776 78899999999999999999999988876664432    23478889999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHH
Q 007932          411 GFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFF  490 (584)
Q Consensus       411 g~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~  490 (584)
                      |+++++++++++.......    ..        ....+.+|++..+++.++||.+..|...+++.+.+|++.||..+|++
T Consensus       351 g~~~~g~~f~~l~~~~~~~----~~--------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w  418 (493)
T PRK15462        351 GLGLMSAGFCILTLSARWS----AM--------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIY  418 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhc----CC--------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHH
Confidence            9999999998887653211    00        11267889999999999999999999999999999999999999999


Q ss_pred             HHHH-hHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHH-HHH-HHhhhhcccc
Q 007932          491 TSGI-GVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILN-LGA-FFWASSRYVY  557 (584)
Q Consensus       491 ~~~~-~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~-~l~-~~~~~~~~~~  557 (584)
                      .+.. .+|+.++..+.......    +..+-........++..+|..++.+++++ .++ +.+.++..|.
T Consensus       419 ~l~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  484 (493)
T PRK15462        419 MLLSGAIANYLAGVIADQTSQA----SFDASGAINYSINAYIEVFDQITWGALACVGVVLMIWLYQALKF  484 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc----cCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8744 67777776666544211    00000000001224556787777777666 443 4444444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=100.00  E-value=2.3e-33  Score=303.31  Aligned_cols=451  Identities=16%  Similarity=0.216  Sum_probs=323.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc-ccchhHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQ--LHEDTVSSVRNVNNWSGVVWITPLLGAYIADT-YIGRFWTFTL  100 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grk~~~~~  100 (584)
                      .+++|.++.+++.++++++++|++.++++.|++++  +|++..+++++.+.+.++..++++++|+++|| + ||||++.+
T Consensus         6 ~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~-G~~~~l~~   84 (475)
T TIGR00924         6 FGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVW-GTKKTMVL   84 (475)
T ss_pred             cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhc-chHHHHHH
Confidence            46778899999999999999999999999999987  99999999999999999999999999999999 6 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccce
Q 007932          101 SSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS  180 (584)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (584)
                      +.++.+++.++++++                    .+.+.++++|.+.|+|.|...|+.+++++|++|+++.+   +|++
T Consensus        85 ~~~~~~~g~~~~~~~--------------------~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~~  141 (475)
T TIGR00924        85 GGIVLMLGHFMLAMS--------------------IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRDG  141 (475)
T ss_pred             HHHHHHHHHHHHHhc--------------------ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---cccc
Confidence            999999999888875                    33566888999999999999999999999999876421   5889


Q ss_pred             eeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhh----HHH-----
Q 007932          181 FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDL----IRV-----  251 (584)
Q Consensus       181 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----  251 (584)
                      ++++++++.|+|..+||.+++++.+++||++.|.+.++..+++.+.+...++.+++.++++ ++....    .+.     
T Consensus       142 ~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  220 (475)
T TIGR00924       142 GFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALL  220 (475)
T ss_pred             eehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHH
Confidence            9999999999999999999999999899999999988766666655555554443222111 111000    000     


Q ss_pred             --HHHHHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH
Q 007932          252 --PIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI  329 (584)
Q Consensus       252 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (584)
                        ........... .....  .  +..... ...      ...-...... .     ++    ..++ .++++......+
T Consensus       221 ~~~~~~~~~~~~~-~~~~~--~--~~~~~~-~~~------~~~~~~~~~~-~-----~~----~~~~-~~~~~~~~~l~l  277 (475)
T TIGR00924       221 AALALVFFCAWLM-HHVVI--A--NILLMT-VTL------AVIIFFFRLA-F-----KP----RLDA-VARNKMYAYIVL  277 (475)
T ss_pred             HHHHHHHHHHHHH-hccHH--H--HHHHHH-HHH------HHHHHHHHHH-H-----hc----cCCH-HHHhHHHHHHHH
Confidence              00000000000 00000  0  000000 000      0000000000 0     00    0111 223444456677


Q ss_pred             HHHhhhhhhhhccccceE-EEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHH
Q 007932          330 WLVTLIPSTIWAQINTLF-VKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRL  408 (584)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i  408 (584)
                      +.....+|+.+.|..+.+ +++...++...+ ++.+++++++++|++..++..|+.+++..++.||    ...++...++
T Consensus       278 ~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~-~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~  352 (475)
T TIGR00924       278 FLEAVVFWVLYAQMPTSLNFFADNNMHHEML-GMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKF  352 (475)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcccccc-ceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHH
Confidence            788888999999988643 333344555555 6788999999999999999999988765555554    2233666788


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHH
Q 007932          409 GVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTT  488 (584)
Q Consensus       409 ~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g  488 (584)
                      .+|+++.+++++.++......     +       +..+.+++|+++.+++.++||.+..|..++++++.+|++.||+++|
T Consensus       353 ~~G~~l~~~~~~~~~~~~~~~-----~-------~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g  420 (475)
T TIGR00924       353 TLGMLFCGASFLTFAASIWFA-----D-------AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLG  420 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc-----C-------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999998887652110     0       0124688999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007932          489 FFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRY  555 (584)
Q Consensus       489 i~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~  555 (584)
                      ++.+...+|+.+++.+......                ..++..+|...++++++..+++++..+..
T Consensus       421 ~~~l~~~~g~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (475)
T TIGR00924       421 MWFLAQAMGSLLGGYLATFGAV----------------PQGVTGVFGKIGLVTLLVGVVMALMVPWL  471 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc----------------ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888765531                11234457777777777666666555543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=100.00  E-value=1.5e-32  Score=298.82  Aligned_cols=454  Identities=14%  Similarity=0.226  Sum_probs=320.1

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc-ccchhHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADT-YIGRFWTFTLSS  102 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grk~~~~~~~  102 (584)
                      .+++|.++.+++.++++++++|++.++++.|+++++|++..+++++.+.+.......++++|+++|| + |||++++++.
T Consensus        17 ~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~-G~r~~~~~g~   95 (500)
T PRK09584         17 FKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVL-GTKRVIMLGA   95 (500)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999888887878888899999999 6 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      ++.+++..+++++.                   .+.+.+.++|+++|+|.|...++..++++|++|++++    +|.+++
T Consensus        96 ~~~~ig~~l~~~~~-------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~----~~~~~~  152 (500)
T PRK09584         96 IVLAIGYALVAWSG-------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDP----RLDGAF  152 (500)
T ss_pred             HHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCch----hhhhcc
Confidence            99999988888752                   2345677889999999999999999999999987642    466789


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeec--CCCCCChhhhhHHHH-------H
Q 007932          183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHK--IRKTKSPARDLIRVP-------I  253 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~  253 (584)
                      ++++++.|+|+.+||.+++++.+++||++.|++.++..+++.+.+....+.+++.  +|+. .+... .+..       .
T Consensus       153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~  230 (500)
T PRK09584        153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDF-EPINY-RKLLLTIVGVVA  230 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCc-cccch-hhHHHHHHHHHH
Confidence            9999999999999999999999999999999998876666655444433333222  1211 11111 1100       0


Q ss_pred             HHH-hhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 007932          254 AAF-RNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLV  332 (584)
Q Consensus       254 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (584)
                      ... .......+.    ...            .     ............    ....... .+..++++.+..+.+++.
T Consensus       231 ~~~~~~~~~~~~~----~~~------------~-----~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~  284 (500)
T PRK09584        231 LIAIATWLLHNQE----IAR------------M-----ALGVVALGIVVI----FGKEAFA-MKGAARRKMIVAFILMLE  284 (500)
T ss_pred             HHHHHHHHHhcch----HHH------------H-----HHHHHHHHHHHH----HHHHHhh-cCHHHHHHHHHHHHHHHH
Confidence            000 000000000    000            0     000000000000    0000001 112345566666777788


Q ss_pred             hhhhhhhhccccceEEEecc-cccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHH
Q 007932          333 TLIPSTIWAQINTLFVKQGT-TLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVG  411 (584)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig  411 (584)
                      .+.+|+.+.|.+..+..+.. ..+..+. ++..++++++++|++..++..|+.++...++.+|.       +..+++.+|
T Consensus       285 ~i~f~~~~~q~~~~l~~~~~~~~~~~~~-g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-------~~~~~~~~G  356 (500)
T PRK09584        285 AIIFFVLYSQMPTSLNFFAIRNVEHSIL-GIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-------PMPHKFAIG  356 (500)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhcccccc-ceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-------CcHHHHHHH
Confidence            89999999999877655432 2344444 57788999999999999999999888765554442       567889999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHH
Q 007932          412 FVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFT  491 (584)
Q Consensus       412 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~  491 (584)
                      +++++++++++.......    +.        ....+.+|+++.+++.++||.+..|...+++.+.+|+++||.++|++.
T Consensus       357 ~~l~~l~f~~l~~~~~~~----~~--------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~  424 (500)
T PRK09584        357 MVLCSGAFLVLPLGAKFA----ND--------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWF  424 (500)
T ss_pred             HHHHHHHHHHHHHHHHhc----CC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999887763210    00        123667799999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCC-ccchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 007932          492 SGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLN-DCHLDYYYGFLMVISILNLGAFFWASSRYV  556 (584)
Q Consensus       492 ~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~-~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~  556 (584)
                      +...+|+.++..+...+...       .-..|... .+++..+|..+++++++.+++++...++.+
T Consensus       425 l~~a~g~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~  483 (500)
T PRK09584        425 LTTAGAALIAGYVANLMAVP-------DNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN  483 (500)
T ss_pred             HHHHHHHHHHHHHHHHhccc-------cccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887776543210       00111111 224667788888877776666665555443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.93  E-value=5.1e-24  Score=225.87  Aligned_cols=374  Identities=11%  Similarity=0.021  Sum_probs=244.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      .+|.+..++...+...++.....+.++.|+++++|.|+.+.+++.+.+.++..+++++.|+++||+ ||||+++++.++.
T Consensus        13 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~   91 (399)
T PRK05122         13 LTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGC   91 (399)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHH
Confidence            346777788888999999888899999999999999999999999999999999999999999999 9999999999888


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      +++.+.+..+.....            ....+...+++.|+++|++.+...+...+++.|.+|++      +|+++++++
T Consensus        92 ~~~~~~~~~~~~~~~------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~  153 (399)
T PRK05122         92 ALSGLLYLLAGLLAA------------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGAL------HTGRVISWN  153 (399)
T ss_pred             HHHHHHHHHhhhhhc------------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChh------hhccchhhh
Confidence            887766655421000            00124667899999999999999999999999999887      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCC
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPD  265 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (584)
                      ....++|..+|+.+++++.+..||+..+++..+..++..+.   ..+ .++.++++ .+.                    
T Consensus       154 ~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~-~~~--------------------  208 (399)
T PRK05122        154 GIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLL---ARP-RPAVPPVK-GER--------------------  208 (399)
T ss_pred             hhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH---Hhc-CCCCCCCC-ccc--------------------
Confidence            99999999999999999999899998887665543332221   111 00000000 000                    


Q ss_pred             CCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHH-HHHHhhhhhhhhcccc
Q 007932          266 NPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMAL-IWLVTLIPSTIWAQIN  344 (584)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  344 (584)
                                                .++.+                      ..|+.+.... ..+....+.......+
T Consensus       209 --------------------------~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (399)
T PRK05122        209 --------------------------LPFRR----------------------VLGRVWPYGMGLALASIGFGTIATFIT  240 (399)
T ss_pred             --------------------------hhHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                      00000                      0011111110 1111111111111111


Q ss_pred             ceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007932          345 TLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYA  424 (584)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~  424 (584)
                      .++..+      .    +. ..+.......++.+++.++.+++.+|..+|           +.+..+..+.+++......
T Consensus       241 ~~~~~~------~----~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~  298 (399)
T PRK05122        241 LYYAAR------G----WD-GAALALTLFGVAFVGARLLFGNLINRLGGL-----------RVAIVSLLVEILGLLLLWL  298 (399)
T ss_pred             HHHHHc------c----cc-cchHHHHHHHHHHHHHHHHHHHHHHHhccH-----------HHHHHHHHHHHHHHHHHHH
Confidence            111110      0    10 111222233444455555555554443322           3355566666666554443


Q ss_pred             HHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHH
Q 007932          425 VEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFL  504 (584)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l  504 (584)
                      .                     .+.+..+...++.|++.....+.....+.+.+|++.||++.|+++....+|..+++.+
T Consensus       299 ~---------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~  357 (399)
T PRK05122        299 A---------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPL  357 (399)
T ss_pred             h---------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3                     1333455566788888888888777777789999999999999999999999998888


Q ss_pred             HHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 007932          505 VTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFW  550 (584)
Q Consensus       505 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~  550 (584)
                      .+.+.+.                .++...|++.+++.+++.+..+.
T Consensus       358 ~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        358 AGLVASW----------------FGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHH----------------cCHHHHHHHHHHHHHHHHHHHHH
Confidence            8776531                13455677777766666554443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.93  E-value=1.9e-24  Score=228.61  Aligned_cols=374  Identities=12%  Similarity=0.047  Sum_probs=242.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      .+|..++.+.+..+......+...+.+| .+.+++|.++.+.+++.+.+.++..+++++.|+++||+ ||||++.++.++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   83 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLS-DIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVL   83 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchH-HHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence            3455566666666665555554434444 56789999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.+.+.++                    ++.+.++++|+++|++.+...+...+++.|.+|++      +|++++++
T Consensus        84 ~~~~~~~~~~~--------------------~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~  137 (390)
T PRK03545         84 FIASHVLSALA--------------------WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSL  137 (390)
T ss_pred             HHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHH
Confidence            99999888886                    45788999999999999988899999999999987      59999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCC
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLP  264 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (584)
                      ...+.++|..++|.+++.+.+..|||+.|++.++..++..+..+...|+.+   ++++++.++                 
T Consensus       138 ~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~-----------------  197 (390)
T PRK03545        138 LATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP---SEHSGSLKS-----------------  197 (390)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC---CCCcchHHH-----------------
Confidence            999999999999999999999899999999988765555444333222110   000000000                 


Q ss_pred             CCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHH-HHHHHHhhhhhhhhccc
Q 007932          265 DNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGM-ALIWLVTLIPSTIWAQI  343 (584)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  343 (584)
                                                   +.+                    .-.++..+.. ...+......+......
T Consensus       198 -----------------------------~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (390)
T PRK03545        198 -----------------------------LPL--------------------LFRRPALVSLYLLTVVVVTAHFTAYSYI  228 (390)
T ss_pred             -----------------------------HHH--------------------HHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                         000                    0001111111 11111111122222222


Q ss_pred             cceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007932          344 NTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAY  423 (584)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~  423 (584)
                      +.+...+ .+.+       ....+.+.....++.+++..+.+++.+|..+|            .+.++..+..++.....
T Consensus       229 ~~~l~~~-~g~s-------~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~------------~~~~~~~~~~~~~~~l~  288 (390)
T PRK03545        229 EPFVQQV-AGLS-------ENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG------------FLLIAIALLLVCLLLLL  288 (390)
T ss_pred             HHHHHHh-cCCC-------ccHHHHHHHHHHHHHHHHHHHHHHHhhccchh------------HHHHHHHHHHHHHHHHH
Confidence            2211110 0111       11122333334445555555555543332221            24444444444443322


Q ss_pred             HHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHH
Q 007932          424 AVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSF  503 (584)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~  503 (584)
                      ..                    ..+.+.++...++.|++.....+.....+.+..| +.|++++|+++....+|..+|+.
T Consensus       289 ~~--------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~  347 (390)
T PRK03545        289 PA--------------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGAL  347 (390)
T ss_pred             HH--------------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence            21                    0133445556667777777666766777777777 57899999999999999999999


Q ss_pred             HHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q 007932          504 LVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWAS  552 (584)
Q Consensus       504 l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~  552 (584)
                      +.+.+.+.                .++...|++.+++.+++++.++...
T Consensus       348 ~~G~~~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        348 LGNQVSLH----------------LGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHhc----------------cChhHHHHHHHHHHHHHHHHHHHHc
Confidence            99887631                1445567888888877777665554

>PRK12382 putative transporter; Provisional

Probab=99.93  E-value=1.4e-23  Score=222.05  Aligned_cols=375  Identities=10%  Similarity=-0.003  Sum_probs=241.8

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      ...+.++.+.+..+...++.....+.+|.|+.+++|.|..+.+++.+.+.++..+++++.|+++||+ ||||+++++.+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~   90 (392)
T PRK12382         12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLA   90 (392)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHH
Confidence            3446677777788888888888889999999999999999999999999999999999999999999 999999999887


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.+........+.            ....+.+.++++|+++|++.+...+...+++.|.+|++      +|++++++
T Consensus        91 ~~~~~~~~~~~~~~~~------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~  152 (392)
T PRK12382         91 CGLAGLAYLLAAILPV------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSW  152 (392)
T ss_pred             HHHHHHHHHhhhcccc------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhH
Confidence            7766544333211010            00145778999999999999988888888999999877      59999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCC
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLP  264 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (584)
                      .+.+.++|..++|.+++++.+.+||++.+.+..+..++..   .... +.++.++++ +.                    
T Consensus       153 ~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~--------------------  207 (392)
T PRK12382        153 NGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNG-TVRKVPAHA-GE--------------------  207 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHH-hccCCCCCc-cc--------------------
Confidence            9999999999999999999888999987665544322221   1111 111100000 00                    


Q ss_pred             CCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHH-HHHHHHhhhhhhhhccc
Q 007932          265 DNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGM-ALIWLVTLIPSTIWAQI  343 (584)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  343 (584)
                       .                      .   ++.+                      ..|..+.. .........+.......
T Consensus       208 -~----------------------~---~~~~----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (392)
T PRK12382        208 -R----------------------P---SLWS----------------------VVGLIWKPGLGLALQGVGFAVIGTFV  239 (392)
T ss_pred             -C----------------------c---hHHH----------------------HHHHHHHhHHHHHHHHHHHhHHHHHH
Confidence             0                      0   0000                      00000000 00011111111111111


Q ss_pred             cceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007932          344 NTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAY  423 (584)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~  423 (584)
                      +.++ .+     ..    +. ..........++.+++.++.+++.+|+.+|           +.+..+..+.+++.....
T Consensus       240 ~~~~-~~-----~~----~~-~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~  297 (392)
T PRK12382        240 SLYF-AS-----KG----WA-MAGFTLTAFGGAFVLMRVLFGWMPDRFGGV-----------KVAIVSLLVETVGLLLLW  297 (392)
T ss_pred             HHHH-Hh-----cC----Cc-hhHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------eehHHHHHHHHHHHHHHH
Confidence            1111 10     01    11 111222233444555556666555444433           224556666666655444


Q ss_pred             HHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHH
Q 007932          424 AVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSF  503 (584)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~  503 (584)
                      ..                     .+.+..+...++.+++.+...+.....+.+.+|++.||++.|++++...+|+.+++.
T Consensus       298 ~~---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~  356 (392)
T PRK12382        298 LA---------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGP  356 (392)
T ss_pred             Hc---------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33                     123344556677788888888887788888999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHh
Q 007932          504 LVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFW  550 (584)
Q Consensus       504 l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~  550 (584)
                      +.+.+.+..                ++...|.+.+++.+++.++.+.
T Consensus       357 ~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        357 LAGMLATSF----------------GYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHh----------------CchHHHHHHHHHHHHHHHHHHh
Confidence            998876422                3455677777777666555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.92  E-value=1.8e-23  Score=221.83  Aligned_cols=169  Identities=14%  Similarity=0.132  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI  110 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~  110 (584)
                      ++++...++.+.+.+.+.++++.|+++++|.|..+.|++.+...+...+.++++|+++||+ |||+++.++.++.+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence            6677888899999999999999999999999999999999999999999999999999999 999999999999999988


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      ++...                    ++.+.+++.|++.|++.+...|...+++.|.+|++      +|+++.++.+...+
T Consensus        92 ~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~  145 (400)
T PRK11646         92 TMAIA--------------------HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDS  145 (400)
T ss_pred             HHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHH
Confidence            88765                    45777899999999999988899999999999987      59999999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIF  227 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~  227 (584)
                      +|..+||.+++++. .++|++.|++.++..++..++.
T Consensus       146 ~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~  181 (400)
T PRK11646        146 AGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFN  181 (400)
T ss_pred             HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998 6899999998877655554443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.92  E-value=1.2e-22  Score=207.96  Aligned_cols=379  Identities=13%  Similarity=0.072  Sum_probs=267.8

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHH
Q 007932           22 SKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLS  101 (584)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  101 (584)
                      +.+..|..++.+.++.|.....=+.....+| -+.+++|.+..++|+.++.|.++..++.|+...+.||+ .||++++..
T Consensus         7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp-~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~   84 (394)
T COG2814           7 ARKPMWLALLALALAAFAIGTTEFVPVGLLP-PIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGL   84 (394)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHhchH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHH
Confidence            3456778888888888888888887766665 45789999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      +.++.++.++++++                    ++++++.++|++.|+..|.+++...++.++..|++      +|+++
T Consensus        85 l~lFi~~n~l~alA--------------------p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~------~~~~A  138 (394)
T COG2814          85 LALFIVSNLLSALA--------------------PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPG------KRGRA  138 (394)
T ss_pred             HHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------chhhH
Confidence            99999999999998                    67999999999999999999999999999999999      69999


Q ss_pred             eeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCC-CChhhhhHHHHHHHHhhcc
Q 007932          182 FNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKT-KSPARDLIRVPIAAFRNRK  260 (584)
Q Consensus       182 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  260 (584)
                      .++...+..+..++|..++.++.+.+|||..|++.+...+++.+..+...|  +++.++. +.+..+..           
T Consensus       139 iaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~-----------  205 (394)
T COG2814         139 LALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLL-----------  205 (394)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHH-----------
Confidence            999999999999999999999999999999999988887777777666555  1111111 01000000           


Q ss_pred             ccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhh
Q 007932          261 IQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIW  340 (584)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (584)
                                                      +.+                      .+.+....+...++.....+..+
T Consensus       206 --------------------------------~~l----------------------~~p~v~~~l~~t~l~~~g~F~~f  231 (394)
T COG2814         206 --------------------------------RLL----------------------RRPGVLLGLLATFLFMTGHFALY  231 (394)
T ss_pred             --------------------------------HHh----------------------cCchHHHHHHHHHHHHcchhhhH
Confidence                                            000                      01122223334444444444444


Q ss_pred             ccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 007932          341 AQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA  420 (584)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~  420 (584)
                      .+..++..... +++       .....+......++.+++..+.+++.|| ..|           +.+.....++++.++
T Consensus       232 tYi~P~L~~v~-g~s-------~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~-----------~~l~~~~~l~a~~~l  291 (394)
T COG2814         232 TYIRPFLESVA-GFS-------VSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR-----------RALIAALLLLALALL  291 (394)
T ss_pred             HhHHHHHHHcc-CCC-------HhHHHHHHHHHHHHHHHHHHHHhhhccc-cch-----------hHHHHHHHHHHHHHH
Confidence            44443332211 111       1122344445566667777766666554 222           235555566666666


Q ss_pred             HHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHH
Q 007932          421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFL  500 (584)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~l  500 (584)
                      .+.+..                    .+.+..+...++.+++..........-..+.. ++.++.+++++....++|..+
T Consensus       292 ~l~~~~--------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~  350 (394)
T COG2814         292 ALTFTG--------------------ASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIAL  350 (394)
T ss_pred             HHHHhc--------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHH
Confidence            655541                    22333444445566666555555555555533 477999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q 007932          501 NSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWAS  552 (584)
Q Consensus       501 g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~  552 (584)
                      |..+.+.+.+.                .++....++.+.+.+++.++.+...
T Consensus       351 GA~lGG~v~~~----------------~g~~~~~~~~a~l~~~a~~~~~~~~  386 (394)
T COG2814         351 GAALGGLVLDA----------------LGYAATGWVGAALLLLALLLALLSA  386 (394)
T ss_pred             HHHHHHHHHHh----------------hchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988742                2445556677776666665554443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.91  E-value=4.6e-23  Score=219.02  Aligned_cols=356  Identities=13%  Similarity=0.073  Sum_probs=232.6

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      .+|..+.+.....+.+.+..+......| .+.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~   89 (406)
T PRK11551         12 RLALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVAL   89 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHH
Confidence            5556666777778888887776655555 45678999999999999999999999999999999999 999999999988


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.+++.+.                    .+.+.+++.|++.|++.+...+...+++.|.+|++      +|++++++
T Consensus        90 ~~~~~~~~~~~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~  143 (406)
T PRK11551         90 FGLFSLATAQA--------------------WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSL  143 (406)
T ss_pred             HHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHH
Confidence            88888777765                    45778999999999999999999999999999987      59999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCC
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLP  264 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (584)
                      .+...++|..+++.+++.+.+..+|++.|++.++..++..+......++.++..+++ .               +    +
T Consensus       144 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~---------------~----~  203 (406)
T PRK11551        144 MYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA-G---------------A----G  203 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc-C---------------c----c
Confidence            999999999999999988888899999999877654444433333222111000000 0               0    0


Q ss_pred             CCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHH-HHHHHHhhhhhhhhccc
Q 007932          265 DNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGM-ALIWLVTLIPSTIWAQI  343 (584)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  343 (584)
                      ++.                        ....+.. .            +   ....++.... ...+.....++....+.
T Consensus       204 ~~~------------------------~~~~~~~-~------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (406)
T PRK11551        204 KQR------------------------APVLRAL-F------------G---EGRATATLLLWISYFFTLIVLYFLLNWL  243 (406)
T ss_pred             hhh------------------------hhhHHHH-h------------h---hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000                        0000000 0            0   0001111111 11111112222222222


Q ss_pred             cceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007932          344 NTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAY  423 (584)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~  423 (584)
                      +.+...      ....   ....+.+.....++.+++..+.+++.+|+.+|+           .+.++.+..++++....
T Consensus       244 p~~~~~------~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~  303 (406)
T PRK11551        244 PSLLVG------QGLS---RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-----------VVLLIYAGILASLAALA  303 (406)
T ss_pred             HHHHHh------CCCC---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHHH
Confidence            221111      1111   112233444455566666666666666555442           23334444444443333


Q ss_pred             HHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHH
Q 007932          424 AVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSF  503 (584)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~  503 (584)
                      ..                     .+.+.+....++.+++.....+...++..+.+|++.|+++.|+.+....+|+.+++.
T Consensus       304 ~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~  362 (406)
T PRK11551        304 AA---------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPL  362 (406)
T ss_pred             hc---------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhh
Confidence            22                     123334445566677777777888888899999999999999999999999999999


Q ss_pred             HHHHhh
Q 007932          504 LVTLVD  509 (584)
Q Consensus       504 l~~~i~  509 (584)
                      +.+.+.
T Consensus       363 ~~g~l~  368 (406)
T PRK11551        363 LAGQLL  368 (406)
T ss_pred             hHhhhh
Confidence            987765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.91  E-value=6.8e-23  Score=229.09  Aligned_cols=170  Identities=11%  Similarity=0.054  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932           34 VGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLT  113 (584)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~  113 (584)
                      .++.+...+.... .....+++.+++|++..+.+++.+++.++..++.+++|+++||+ |||+++++++++.+++.++++
T Consensus       173 ~l~~~~~g~d~~~-is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~a  250 (742)
T TIGR01299       173 GLALMADGVEVFV-VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSS  250 (742)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHH
Confidence            3333444333333 34445567788999999999999999999999999999999999 999999999999999888888


Q ss_pred             HhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhH
Q 007932          114 MAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGA  193 (584)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  193 (584)
                      ++                    ++.+.++++|++.|++.|+..+...+++.|.+|++      +|++.+++......+|.
T Consensus       251 fa--------------------~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~  304 (742)
T TIGR01299       251 FV--------------------QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGG  304 (742)
T ss_pred             HH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHH
Confidence            76                    45778999999999999999999999999999988      69999999999999999


Q ss_pred             HHHhhhhhhhhcc-------------cchhHHHHHHHHHHHHHHHHHHHhC
Q 007932          194 LCATLGLVYIQEN-------------LGWGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       194 ~~g~~~~~~l~~~-------------~~~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      ++++.++.++...             .+||+.+++.++..++.++..++.+
T Consensus       305 ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lP  355 (742)
T TIGR01299       305 IYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMP  355 (742)
T ss_pred             HHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9998776555432             3689988887776666555544443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.91  E-value=5.1e-23  Score=215.37  Aligned_cols=161  Identities=10%  Similarity=0.041  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007932           41 RMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKF  120 (584)
Q Consensus        41 ~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~  120 (584)
                      ++....+.+.+ +.+++++|+|+.+.+++.+.+.+++.+++++.|+++||+ |||++++.+++....+.+ +....    
T Consensus         4 ~~~~~~~~~~l-p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~-~~~~~----   76 (368)
T TIGR00903         4 QAIWVTFSPVL-SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAG-RLLDP----   76 (368)
T ss_pred             hHHHHHHHhhH-HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHH-HHHHh----
Confidence            34444444444 455789999999999999999999999999999999999 999987665555444432 22221    


Q ss_pred             cCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhh
Q 007932          121 MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGL  200 (584)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  200 (584)
                                     .+...++++|+++|++.+. .+...+.++|++|++      +|+++.++.+.+.++|..+++.++
T Consensus        77 ---------------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~lG~~l~~~~~  134 (368)
T TIGR00903        77 ---------------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREE------RRDLVISLLSFAMYLGIIFALAAG  134 (368)
T ss_pred             ---------------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           3577899999999999986 455566679999987      699999999999999999999999


Q ss_pred             hhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          201 VYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       201 ~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      +++.+.+|||+.|++.++..++..++.+..
T Consensus       135 ~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~  164 (368)
T TIGR00903       135 LKIYTAGGLQLLIIPIAAVAAAGIILVLAA  164 (368)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998777655554444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.91  E-value=4.7e-23  Score=219.93  Aligned_cols=385  Identities=12%  Similarity=0.035  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI  110 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~  110 (584)
                      ..++...++..++.......+|.+. ++++.++.+.+++.+.+.++..+++++.|+++||+ ||||+++++.++.+++.+
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~~   97 (417)
T PRK10489         20 RAVFIARFISIFGLGLLGVAVPVQI-QMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGFI   97 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHHH
Confidence            3444445556666555556666665 46778999999999999999999999999999999 999999998887777766


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      ++.......               ..+.+.+++.|++.|++.+...++..+++.|.+|++      +|+++.++.+...+
T Consensus        98 ~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  156 (417)
T PRK10489         98 GLALNAFLP---------------EPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVR  156 (417)
T ss_pred             HHHHHHHcC---------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHh
Confidence            654321000               145677888999999998888888899999999887      58999999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCc
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSEL  270 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (584)
                      +|..+||.+++.+.+..+|++.|++.++..++..+..+..++.    +++++++                    ++  ..
T Consensus       157 ~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~--------------------~~--~~  210 (417)
T PRK10489        157 LGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPAL----PPPPQPR--------------------EH--PL  210 (417)
T ss_pred             HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCC----CCCCccc--------------------cc--ch
Confidence            9999999999999888899999988777665555443332211    1110000                    00  00


Q ss_pred             cccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceEEEe
Q 007932          271 HEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQ  350 (584)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (584)
                                           .+..+..+.                ..+.+.+....................+.+ ..+
T Consensus       211 ---------------------~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~  252 (417)
T PRK10489        211 ---------------------RSLLAGFRF----------------LLASPVVGGIALLGGLLTMASAVRVLYPAL-ADE  252 (417)
T ss_pred             ---------------------HHHHHHHHH----------------HHcChHHHHHHHHHHHHHHHHhHHHhhHHH-HHh
Confidence                                 000000000                000111111111111111111111111111 111


Q ss_pred             cccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007932          351 GTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRM  430 (584)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~  430 (584)
                      .    ...+   ....+.+.....++.+++..+.+++    .+|.       +..+.+..+.++.+++++.....     
T Consensus       253 ~----~g~~---~~~~g~~~~~~~~g~~ig~~~~~~l----~~~~-------~~~~~l~~~~~~~~~~~~~~~~~-----  309 (417)
T PRK10489        253 V----WQMG---AAQIGLLYAAVPLGAALGALTSGWL----AHSA-------RPGLLMLLSTLGSFLAVGLFGLM-----  309 (417)
T ss_pred             c----cCCC---hhHhHHHHHHHHHHHHHHHHHHHHh----hhcc-------CcchHHHHHHHHHHHHHHHHHcc-----
Confidence            0    0110   1122334444455555655555544    3331       11223555666666555544332     


Q ss_pred             hhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 007932          431 HVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDK  510 (584)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~  510 (584)
                                      .+++..+...++.+++.....+...+++.+..|++.||++.|+++....+|..+|+.+.+.+.+
T Consensus       310 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~  373 (417)
T PRK10489        310 ----------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGA  373 (417)
T ss_pred             ----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHH
Confidence                            1233445566677888877777778888899999999999999999999999999999988764


Q ss_pred             hhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 007932          511 VTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVY  557 (584)
Q Consensus       511 ~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~  557 (584)
                      ..                +....+...+...++..++.....++.|+
T Consensus       374 ~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        374 MM----------------TPVASASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             Hh----------------chhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence            22                22234555555555544444444444443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.91  E-value=1e-22  Score=220.81  Aligned_cols=176  Identities=9%  Similarity=0.007  Sum_probs=135.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +++.+.....+.++.....+.+.+.+ .++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~  111 (476)
T PLN00028         34 HMRAFHLSWISFFTCFVSTFAAAPLL-PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLT  111 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence            34444455555555555555555444 366889999999999999999999999999999999999 9999999999988


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.++++++                    .+.+.+++.|++.|++.+... ....+++|++|++      +|+++.++.
T Consensus       112 ~~~~~~~~~~--------------------~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~------~rg~a~g~~  164 (476)
T PLN00028        112 APAVFCMSLV--------------------SSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGK------IVGTANGIA  164 (476)
T ss_pred             HHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChh------heeHHHHHH
Confidence            8888877776                    346678889999999887654 3456789999987      599999998


Q ss_pred             hhHHhHhHHHHhhhhhhhhc---------ccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          186 MFSSFIGALCATLGLVYIQE---------NLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~---------~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      +...++|+.+++.+.+.+..         ..|||+.|++.++..++..+..++.
T Consensus       165 ~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        165 AGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887766655422         2589999999887765555444443

>PRK10504 putative transporter; Provisional

Probab=99.91  E-value=1.3e-22  Score=219.99  Aligned_cols=178  Identities=10%  Similarity=0.044  Sum_probs=153.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      .|.+|.+.+..++.....+.+.+.+|.|.+ ++|.++.+.+++.+.+.++..++.+++|+++||+ ||||+++.+.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   86 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT   86 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence            456788888888888888888888887765 6999999999999999999999999999999999 99999999998888


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.+++.++                    ++.+.++++|+++|++.+...|...+++.|.+|++      +|+++.++.+
T Consensus        87 ~~~~~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  140 (471)
T PRK10504         87 LGSLFCALS--------------------GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVT  140 (471)
T ss_pred             HHHHHHHHh--------------------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHH
Confidence            888877765                    45777899999999999999999999999999877      5899999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      ...++|..+||.+++++.+..+|++.|++......+..+......+
T Consensus       141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~  186 (471)
T PRK10504        141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMP  186 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999877665555544444333

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.91  E-value=6.1e-23  Score=220.22  Aligned_cols=168  Identities=11%  Similarity=0.032  Sum_probs=142.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHH
Q 007932           29 ACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLG  108 (584)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~  108 (584)
                      ..+..++..+...+..+.+...++.+ .+++|++..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++..++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~  101 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEM-LADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGII  101 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHH
Confidence            33444555555555555555666655 457999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhH
Q 007932          109 MILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFS  188 (584)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (584)
                      .++++++                    ++.+.+.+.|++.|++.|...+...+++.|++|++      +|++++++++..
T Consensus       102 ~~~~~~~--------------------~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~  155 (434)
T PRK11663        102 NILFGFS--------------------SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTA  155 (434)
T ss_pred             HHHHHHH--------------------hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHH
Confidence            8888876                    45777889999999999998999999999999987      599999999999


Q ss_pred             HhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHH
Q 007932          189 SFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSL  224 (584)
Q Consensus       189 ~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~  224 (584)
                      .++|..+++.+.+++.+.+|||+.|++.++..++..
T Consensus       156 ~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        156 HNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            999999999999999998999999998776644443

>PRK10054 putative transporter; Provisional

Probab=99.91  E-value=3e-23  Score=219.73  Aligned_cols=178  Identities=12%  Similarity=0.053  Sum_probs=155.5

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      .+.+|..+.+....++...+.+.+.++++.|+++++|+|..+.+++.+.+.++..+.+++.|+++||+ |||++++++.+
T Consensus         3 ~~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~   81 (395)
T PRK10054          3 LSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAIT   81 (395)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      +..++.+++.+.                    ++.+.++++|.+.+.+.+...+...++..|.+|++      +|+++++
T Consensus        82 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g  135 (395)
T PRK10054         82 AFASGFIAIPLV--------------------NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFS  135 (395)
T ss_pred             HHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHH
Confidence            888888877776                    34666777888888887777888999999999877      5999999


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +.+...++|..+||.+++++.+ .+|+.+|++.++..++..+....
T Consensus       136 ~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~  180 (395)
T PRK10054        136 LNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQI  180 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875 78999999887776665444433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.91  E-value=4.3e-23  Score=224.09  Aligned_cols=188  Identities=14%  Similarity=0.149  Sum_probs=140.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--------CCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL--------HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWT   97 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--------~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~   97 (584)
                      +.+.+++..+..+...+....+.+..+ .+++++        +.+..+.+++.+.+.++..++++++|+++||+ ||||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~   87 (479)
T PRK10077         10 IFSITLVATLGGLLFGYDTAVISGTVE-SLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDS   87 (479)
T ss_pred             HHHHHHHHHHHHHhcCcccceehHhHH-HHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHH
Confidence            445555566666666555443333333 344444        88889999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcc
Q 007932           98 FTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNL  177 (584)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (584)
                      ++++.+++.++.+++++... ...      .. ..++......++++|+++|++.|...+...++++|++|++      +
T Consensus        88 ~~~~~~l~~i~~~~~~~~~~-~~~------~~-~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~------~  153 (479)
T PRK10077         88 LKIAAVLFFISALGSAWPEF-GFT------SI-GPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAH------I  153 (479)
T ss_pred             HHHHHHHHHHHHHHHHhhcc-ccc------cc-cccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChh------h
Confidence            99999999888877765310 000      00 0011234567889999999999999999999999999988      5


Q ss_pred             cceeeeeehhHHhHhHHHHhhhhhhhh--------cccchhHHHHHHHHHHHHHHHHHHH
Q 007932          178 KVSFFNWWMFSSFIGALCATLGLVYIQ--------ENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       178 r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      |++++++...+..+|..+++.++..+.        +..|||+.|++.++..++..+..++
T Consensus       154 rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        154 RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999877665442        3578999999887765555444333

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.91  E-value=3e-23  Score=224.76  Aligned_cols=156  Identities=12%  Similarity=-0.028  Sum_probs=129.3

Q ss_pred             HHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcC
Q 007932           52 VNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICS  131 (584)
Q Consensus        52 ~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (584)
                      .+.+.+++|++..+.+++.+.+.+++.+++++.|+++||+ ||||++.+++++.+++.++.+.....             
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~-------------  117 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS-------------  117 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence            4457789999999999999999999999999999999999 99999999888877777666653100             


Q ss_pred             CCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhccc---c
Q 007932          132 KTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL---G  208 (584)
Q Consensus       132 ~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~  208 (584)
                        ..++.+.+++.|+++|++.+...|...++++|++|++      +|+++++++..+.++|..+++.+..++.+..   +
T Consensus       118 --~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~  189 (467)
T PRK09556        118 --GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRR------KRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGH  189 (467)
T ss_pred             --ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcc------ceeeeEEeeecccchhhhHHHHHHHHHHHhhccCc
Confidence              0156888999999999999999999999999999988      5999999999999999999998887776543   5


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 007932          209 WGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       209 ~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      |+..|.+.++..++..++.+.
T Consensus       190 ~~~~f~~~g~~~~~~~i~~~~  210 (467)
T PRK09556        190 VIGMFIFPSIIALIIGFIGLR  210 (467)
T ss_pred             chhHHHHHHHHHHHHHHHHHH
Confidence            888888877665544444333

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.91  E-value=3.1e-23  Score=229.10  Aligned_cols=336  Identities=25%  Similarity=0.443  Sum_probs=265.0

Q ss_pred             HHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007932           42 MAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFM  121 (584)
Q Consensus        42 ~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (584)
                      +++|++.+.+..|+++.+|++.+.+..+.+.+.....+.++++|+++|+++||+|+++++.++..+|..++++.+..+..
T Consensus         1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999888875421110


Q ss_pred             CCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhh
Q 007932          122 KPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLV  201 (584)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  201 (584)
                                  ........+++..+.++|.|+++|+..+..+|+++++++   ++|.+++.+++++.|+|+.+++++.+
T Consensus        81 ------------~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~  145 (654)
T TIGR00926        81 ------------HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITP  145 (654)
T ss_pred             ------------cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        012334577888899999999999999999999986532   25889999999999999999999999


Q ss_pred             hhhcc-------cchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccc
Q 007932          202 YIQEN-------LGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFD  274 (584)
Q Consensus       202 ~l~~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (584)
                      ++.+.       .+|...|.+++++.+++++++...++.+++.+|.+ ++.....+.+..+.+++....+.+        
T Consensus       146 ~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g-s~l~~v~~vi~~a~~~~~~~~~~~--------  216 (654)
T TIGR00926       146 ILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKG-NIVSKVIKCIVTALRKRFSTRSEH--------  216 (654)
T ss_pred             HHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc-cHHHHHHHHHHHHHHHhhccCCcc--------
Confidence            99744       36999999999999999888888777776666655 555555566555555443211100        


Q ss_pred             cccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceEEEecccc
Q 007932          275 TQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTL  354 (584)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (584)
                                     ...+|++.+...          ...+.+++.|++++.+.++...+++|..+.|..+.+..|...+
T Consensus       217 ---------------~~~~~ld~a~~~----------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m  271 (654)
T TIGR00926       217 ---------------WPLHWLDYAKDK----------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM  271 (654)
T ss_pred             ---------------cchhHHHHhccc----------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence                           001233322111          1223467789999999999999999999999998887777777


Q ss_pred             cCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007932          355 NRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRM  430 (584)
Q Consensus       355 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~  430 (584)
                      +..++ ++.+++++++.++++..++..|+.++.+.+..+|+.   .+.++.+++.+|+++.++++++++..+..+.
T Consensus       272 ~~~l~-g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~---~~ls~l~k~~iG~~la~la~~va~~ve~~~~  343 (654)
T TIGR00926       272 DGDVG-GFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG---TRFTSLRKMAVGGLLAALSFFVAALVQLKVN  343 (654)
T ss_pred             cCccC-CEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66665 678899999999999999999999977777666542   2457899999999999999999998875554

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.90  E-value=9.2e-23  Score=222.43  Aligned_cols=399  Identities=12%  Similarity=0.035  Sum_probs=240.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      |..+..+++..+........+...+| .+.+++|.+..+.+|+.+.+.++..++.+++|+++||+ |||++++++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~ld~tiv~~a~p-~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~   82 (495)
T PRK14995          5 WLTLVIIVLVYIPVAIDATVLHVAAP-TLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG   82 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence            34455556666666666655555555 44679999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.++++.+                    ++.+.++++|+++|+|.+...|.....+.+.+++++     +|+++++++.
T Consensus        83 ~~~~~~~~a--------------------~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~  137 (495)
T PRK14995         83 LASLAAAFS--------------------PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWA  137 (495)
T ss_pred             HHHHHHHHc--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHH
Confidence            999999987                    568889999999999999988888888888875443     6999999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHH------HHHHHHhhcc
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIR------VPIAAFRNRK  260 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  260 (584)
                      ...++|..+||.+++++.+++|||+.|++.....++..++.....++.+.++.++ .+......      .+...++...
T Consensus       138 ~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~-~d~~g~~~~~~~~~~l~~~~~~~~  216 (495)
T PRK14995        138 AVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQP-LNLGHALMLIVAILLLVYSAKTAL  216 (495)
T ss_pred             HHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC-CChHhHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999887766555555444433221111111 11100000      0001111000


Q ss_pred             ccCCCCCCCccccccccccccccccccCCCcchh-hhHHHHhcCC-CCCCCCCcccccchhhHHHHHHHHHH-HHhhhhh
Q 007932          261 IQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRC-LDKAAIKHGN-GGDSKPPCTVTQVEGTKLVLGMALIW-LVTLIPS  337 (584)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  337 (584)
                       .  ...+...       ...       .-.... +.......+. ...|..  . .+.-+.|.+....... .....++
T Consensus       217 -~--~~~~~~~-------~~~-------~~~~~~~~l~~f~~~e~~~~~p~~--~-~~lf~~~~~~~~~~~~~~~~~~~~  276 (495)
T PRK14995        217 -K--GFLSLWV-------TSL-------TLLTGALLLGLFIRTQLAASRPMI--D-MRLFTHRIILSGVVMAMTAMITLV  276 (495)
T ss_pred             -c--cCCchHH-------HHH-------HHHHHHHHHHHHHHHHhcCCCCCc--C-HHHhCCcccHHHHHHHHHHHHHHH
Confidence             0  0000000       000       000000 0000000000 000000  0 0000011111111111 1111111


Q ss_pred             hhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHH
Q 007932          338 TIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVM  417 (584)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i  417 (584)
                      ...... +.+..+.    ....   ....+.......++..++.++.+++.+|..+|           +.+..|+++.++
T Consensus       277 ~~~~~~-~~~lq~v----~g~s---~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~-----------~~~~~g~~~~~~  337 (495)
T PRK14995        277 GFELLM-AQELQFV----HGLS---PLEAGMFMLPVMVASGFSGPIAGILVSRLGLR-----------LVATGGMALSAL  337 (495)
T ss_pred             HHHHHH-HHHHHHH----cCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-----------HHHHHHHHHHHH
Confidence            111111 1111110    0100   12233334444555666666666665444433           235667777766


Q ss_pred             HHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHH
Q 007932          418 AIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVG  497 (584)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg  497 (584)
                      +.+......                  ...+.+......++.|++.+...+.....+.+.+|++.++.+.+++++.+.+|
T Consensus       338 ~~~~l~~~~------------------~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG  399 (495)
T PRK14995        338 SFYGLAMTD------------------FSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELG  399 (495)
T ss_pred             HHHHHHHhc------------------CCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHH
Confidence            665544331                  01233344556778899999998888888889999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 007932          498 NFLNSFLVTLVDK  510 (584)
Q Consensus       498 ~~lg~~l~~~i~~  510 (584)
                      +.+|+.+.+.+..
T Consensus       400 ~~~G~ai~g~i~~  412 (495)
T PRK14995        400 AGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=2.7e-22  Score=212.31  Aligned_cols=177  Identities=12%  Similarity=0.065  Sum_probs=154.3

Q ss_pred             ccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHH
Q 007932           20 LSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFT   99 (584)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~   99 (584)
                      ...+|..|+.+..+.++.+......|.....+|.+ .+++|+++.+.++..+.+.++..+++++.|+++||+ ||||+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~   89 (394)
T PRK10213         12 DAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVI   89 (394)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHH
Confidence            34456678877777777777777777776666664 568999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccc
Q 007932          100 LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV  179 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (584)
                      ++.++.+++.+++.++                    ++.+.+++.|+++|++.|...+...+++.|++|++      +|+
T Consensus        90 ~~~~~~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~  143 (394)
T PRK10213         90 LFAVLLTLSCLLVSFA--------------------NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVP  143 (394)
T ss_pred             HHHHHHHHHHHHHHHH--------------------ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHH
Confidence            9999999998888776                    56888999999999999999999999999999987      599


Q ss_pred             eeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHH
Q 007932          180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSL  224 (584)
Q Consensus       180 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~  224 (584)
                      ++.++.....++|..++|.+++++.+.+|||+.|++.++..++..
T Consensus       144 ~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        144 KALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998776544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.90  E-value=8.5e-23  Score=220.23  Aligned_cols=150  Identities=16%  Similarity=0.097  Sum_probs=126.4

Q ss_pred             HHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCC
Q 007932           53 NYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSK  132 (584)
Q Consensus        53 ~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (584)
                      ..+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.++++++.                
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~----------------  105 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSS----------------  105 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhh----------------
Confidence            345679999999999999999999999999999999998 999999999999999888887763                


Q ss_pred             CCcchHHHHHH-HHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhH
Q 007932          133 TSTSQIAFFYS-SLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGL  211 (584)
Q Consensus       133 ~~~~~~~~~~~-~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~  211 (584)
                          +.+.+++ .|++.|++.+...+...+++.++++ +      +|+++.++.+.+.++|..++|.+++++.+.+|||+
T Consensus       106 ----~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~------~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~  174 (455)
T TIGR00892       106 ----NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-R------RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG  174 (455)
T ss_pred             ----hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-h------hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence                3555544 5688899998776666778888885 4      48999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 007932          212 GYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       212 ~f~~~~~~~~~~~~~~~~~  230 (584)
                      .|++.++..+++.+..++.
T Consensus       175 ~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       175 SFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999888766555444443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.90  E-value=1.2e-22  Score=213.31  Aligned_cols=154  Identities=14%  Similarity=0.095  Sum_probs=137.0

Q ss_pred             HHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007932           49 SNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNG  128 (584)
Q Consensus        49 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (584)
                      +...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++..+++++             
T Consensus        14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~-------------   79 (399)
T TIGR00893        14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFA-------------   79 (399)
T ss_pred             hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHH-------------
Confidence            3444567889999999999999999999999999999999999 99999999999999998888876             


Q ss_pred             CcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccc
Q 007932          129 ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLG  208 (584)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  208 (584)
                             .+.+.++++|++.|++.+...+...+++.|.+|++      +|++++++.+...++|..+++.+++++.+..+
T Consensus        80 -------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~  146 (399)
T TIGR00893        80 -------GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFS  146 (399)
T ss_pred             -------cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence                   45788999999999999999999999999999987      59999999999999999999999999988899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 007932          209 WGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       209 ~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      |++.|++.++..++..+..+.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~  167 (399)
T TIGR00893       147 WQWAFIIEGVLGIIWGVLWLK  167 (399)
T ss_pred             chHHHHHHHHHHHHHHHHhhh
Confidence            999999887765555544443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.90  E-value=4.6e-22  Score=210.56  Aligned_cols=366  Identities=12%  Similarity=0.040  Sum_probs=229.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932           36 YEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMA  115 (584)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~  115 (584)
                      ...+.+..++...+.+| .+.+++|+|..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++++++.++++++
T Consensus        17 ~~~~~~~~~~~~~~~lp-~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a   94 (393)
T PRK09705         17 IGLNMRPLLTSVGPLLP-QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELY   94 (393)
T ss_pred             HHHHcchhhhccchhHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHC
Confidence            33333333454555454 56789999999999999999999999999999999999 99999999999999999999987


Q ss_pred             hhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHH
Q 007932          116 ASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALC  195 (584)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  195 (584)
                                          ++.+.++++|+++|++.+...+..+.++.|++| +      +|+++++.+..+.++|..+
T Consensus        95 --------------------~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~------~~~~~~g~~~~~~~~g~~~  147 (393)
T PRK09705         95 --------------------PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-Q------RTPLVMGLWSAALMGGGGL  147 (393)
T ss_pred             --------------------cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-c------cchhHHHHHHHHHHHHHHH
Confidence                                456778999999999999999999999999987 4      4899999999999999999


Q ss_pred             Hhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccc
Q 007932          196 ATLGLVYIQENL-GWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFD  274 (584)
Q Consensus       196 g~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (584)
                      ++.+++++.++. +||..+.+.++..++.....+...+    ++|++ ++                   +++.       
T Consensus       148 g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~-------------------~~~~-------  196 (393)
T PRK09705        148 GAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSA----REVAS-SH-------------------KTTT-------  196 (393)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc----CCCcc-cc-------------------CCCc-------
Confidence            999999988875 8998877655544433332222211    11111 00                   0000       


Q ss_pred             cccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHH-HHHHHHhhhhhhhhccccceEEEeccc
Q 007932          275 TQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGM-ALIWLVTLIPSTIWAQINTLFVKQGTT  353 (584)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (584)
                             .        ..+                       ....++.+.. ....+....++....+.+.++..  .+
T Consensus       197 -------~--------~~~-----------------------~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g  236 (393)
T PRK09705        197 -------T--------PVR-----------------------VVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--IG  236 (393)
T ss_pred             -------C--------Ccc-----------------------cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cC
Confidence                   0        000                       0001111111 11222222333333333333211  11


Q ss_pred             ccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 007932          354 LNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVI  433 (584)
Q Consensus       354 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~  433 (584)
                      .+       ....+.+..+..++.+++....+++.++..+|           +.+.++..+..++........       
T Consensus       237 ~s-------~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~-----------~~~~~~~~l~~~~~~~~~~~~-------  291 (393)
T PRK09705        237 AS-------AQYSGSLLALMTLGQAAGALLMPAMARHQDRR-----------KLLMLALVLQLVGFCGFIWLP-------  291 (393)
T ss_pred             CC-------hhhhhHHHHHHHHHHHHHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHHHHHcc-------
Confidence            11       11223444455566666666665554433322           234555555555554433221       


Q ss_pred             cccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 007932          434 RVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS-PEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVT  512 (584)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~  512 (584)
                                   .+...+  ...+.+++.+...+.......+.. |++.+++..|+.+....++..+++.+.+.+.+..
T Consensus       292 -------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~  356 (393)
T PRK09705        292 -------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS  356 (393)
T ss_pred             -------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                         111111  123456666666666655555666 4678999999999999999999999998876432


Q ss_pred             cCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 007932          513 GRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYV  556 (584)
Q Consensus       513 ~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~  556 (584)
                                     +++...|.+..+.+++..+....+.++++
T Consensus       357 ---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        357 ---------------GNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             ---------------CCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence                           13344566666666655555555555443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.90  E-value=9.1e-23  Score=220.86  Aligned_cols=149  Identities=11%  Similarity=0.069  Sum_probs=130.8

Q ss_pred             hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcch
Q 007932           58 QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQ  137 (584)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (584)
                      +++++..+.+++.+.+.+++.++++++|+++||+ |||+++.++.++..++.+++..+.+                  .+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------------------~~  130 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG------------------GG  130 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH------------------cC
Confidence            6889999999999999999999999999999999 9999999999988888877665421                  33


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhccc-chhHHHHHH
Q 007932          138 IAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL-GWGLGYGIP  216 (584)
Q Consensus       138 ~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~f~~~  216 (584)
                      .+.+++.|+++|++.+...|....++.|++|++      +|+++.++...+.++|..+++.+++++.+.+ +|++.|++.
T Consensus       131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~  204 (465)
T TIGR00894       131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF  204 (465)
T ss_pred             chHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence            567899999999999999999999999999988      5999999999999999999999999998884 999999998


Q ss_pred             HHHHHHHHHHHHHhC
Q 007932          217 TAGLLFSLVIFYIGS  231 (584)
Q Consensus       217 ~~~~~~~~~~~~~~~  231 (584)
                      ++..++..++++...
T Consensus       205 ~~~~~~~~~~~~~~~  219 (465)
T TIGR00894       205 GIVGCAWSLLWFVFP  219 (465)
T ss_pred             hHHHHHHHHHHHHHh
Confidence            877666655554443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.90  E-value=2.4e-22  Score=214.11  Aligned_cols=178  Identities=11%  Similarity=0.026  Sum_probs=149.7

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      .+|+.++.+.+..+++.+....+.. ...++++++|++..+.+++.+.+.++..+++++.|+++||+ ||||++.+++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~   82 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVL   82 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHH
Confidence            3455566666666666666655544 44588999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.++++++                    ++.+.+++.|++.|++.+...|....++.|++|++      +|+++.++
T Consensus        83 ~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~  136 (412)
T TIGR02332        83 WGIASTATMFA--------------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANAL  136 (412)
T ss_pred             HHHHHHHHHHh--------------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHH
Confidence            99999998886                    45778999999999999999999999999999987      59999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhc------ccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          185 WMFSSFIGALCATLGLVYIQE------NLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      ++.+.++|..+++.+++++.+      ..|||+.|++.++..++..++.++.
T Consensus       137 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~  188 (412)
T TIGR02332       137 FMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFW  188 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999998864      3699999999877655544444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.90  E-value=6.2e-23  Score=221.37  Aligned_cols=145  Identities=17%  Similarity=0.269  Sum_probs=124.5

Q ss_pred             chhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHH
Q 007932           62 DTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFF  141 (584)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (584)
                      +..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++....+                 ..+.+.+
T Consensus        69 ~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~  130 (481)
T TIGR00879        69 SSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAF-----------------ALSVEML  130 (481)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhcc-----------------ccchHHH
Confidence            388999999999999999999999999999 9999999999999999888876531                 1345679


Q ss_pred             HHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhh---hhhhcccchhHHHHHHHH
Q 007932          142 YSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGL---VYIQENLGWGLGYGIPTA  218 (584)
Q Consensus       142 ~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~---~~l~~~~~~~~~f~~~~~  218 (584)
                      +++|+++|++.+...+...++++|.+|++      +|++++++.+.+.++|..+++.++   ..+.+..+||+.|++.++
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~  204 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAPKA------LRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLI  204 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCChh------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHH
Confidence            99999999999999999999999999988      599999999999999999999998   666677899999998666


Q ss_pred             HHHHHHHHHHHh
Q 007932          219 GLLFSLVIFYIG  230 (584)
Q Consensus       219 ~~~~~~~~~~~~  230 (584)
                      ..++..+..++.
T Consensus       205 ~~~~~~~~~~~l  216 (481)
T TIGR00879       205 PAGLLFLGLFFL  216 (481)
T ss_pred             HHHHHHHHHhcC
Confidence            555554444443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.90  E-value=2.3e-22  Score=209.30  Aligned_cols=359  Identities=12%  Similarity=-0.015  Sum_probs=232.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007932           32 FLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMIL  111 (584)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~  111 (584)
                      .+....++..++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ ||||+++++.++..++..+
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~   80 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAV   80 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHH
Confidence            3455666666666666677777765 5799999999999999999999999999999999 9999999999888888777


Q ss_pred             HHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhH
Q 007932          112 LTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFI  191 (584)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  191 (584)
                      +......+               +.+.+.++++|++.|++.+...+...+++.|.+|++      +|++++++.+...++
T Consensus        81 ~~~~~~~~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~  139 (365)
T TIGR00900        81 LPFVALLG---------------GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSL  139 (365)
T ss_pred             HHHHHHcC---------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHH
Confidence            77653111               136788999999999999999999999999999987      599999999999999


Q ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCcc
Q 007932          192 GALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELH  271 (584)
Q Consensus       192 g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (584)
                      |..++|.+++++.+..+|++.|++.++..++..+..+..+.+.+. ++++ .+..                    +    
T Consensus       140 g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--------------------~----  193 (365)
T TIGR00900       140 FYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELA-ASEI-QALS--------------------N----  193 (365)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCC-Cccc-cccc--------------------h----
Confidence            999999999999998999999998877655554444333221100 0000 0000                    0    


Q ss_pred             ccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH-HHHhhhhhhhhccccceEEEe
Q 007932          272 EFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI-WLVTLIPSTIWAQINTLFVKQ  350 (584)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  350 (584)
                        +..+               +..+..+.                ..+.+.++..... +.....+........+.+..+
T Consensus       194 --~~~~---------------~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (365)
T TIGR00900       194 --AVLR---------------DTREGIKF----------------VLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSK  240 (365)
T ss_pred             --hHHH---------------HHHhHHHH----------------HHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence              0000               00000000                0001112111111 111111111110111111111


Q ss_pred             cccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007932          351 GTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRM  430 (584)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~  430 (584)
                      ..    ...   ....+.+.....++.+++..+..++    .+|..       +.+.+..+..+.++++.......    
T Consensus       241 ~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~----  298 (365)
T TIGR00900       241 YL----GRG---STHYGWVLAAFGLGALLGALLLGLL----GRYFK-------RMALMTGAIFVIGLAILVVGLTP----  298 (365)
T ss_pred             Hh----CCc---hHHHHHHHHHHHHHHHHHHHHHHHH----HHHhc-------hhHHHHHHHHHHHHHHHHHHhhc----
Confidence            00    000   1112233344445555555555544    33321       12334555556666665554431    


Q ss_pred             hhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 007932          431 HVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDK  510 (584)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~  510 (584)
                                     + +.+..+...++.+++.+...+...+++.+.+|++.|+++.|+.++...++..+++.+.+.+.+
T Consensus       299 ---------------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       299 ---------------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             ---------------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           1 244556667788999999999999999999999999999999999999999999999877753

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.90  E-value=4e-22  Score=211.71  Aligned_cols=378  Identities=16%  Similarity=0.080  Sum_probs=239.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh-----hhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS-----SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSS  102 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  102 (584)
                      |....+.+..++..+++....+++|.|.+ ++|.+..+     .+++.+.+.++..++.++.|+++||+ |||++++++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~   91 (408)
T PRK09874         14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA   91 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence            44566667778888888888888888875 58888654     47888899999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      ++.+++.+++...                    .+.+.+++.|++.|++.+ ..+....++.|.+|++      +|+++.
T Consensus        92 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~------~~~~~~  144 (408)
T PRK09874         92 LGMGIVMVLMGLA--------------------QNIWQFLILRALLGLLGG-FVPNANALIATQVPRN------KSGWAL  144 (408)
T ss_pred             HHHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHh------hhhHHH
Confidence            8888888777765                    457778999999998765 4577778889999877      589999


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhcccc
Q 007932          183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQ  262 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (584)
                      ++.+...++|..++|.+++.+.+.++|++.|++.++..++..+..+...++.+  ++.++....+. +            
T Consensus       145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~------------  209 (408)
T PRK09874        145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF--QPVSKKEMLHM-R------------  209 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc--ccccchhhhHH-H------------
Confidence            99999999999999999999998899999999888776555554444332111  01000000000 0            


Q ss_pred             CCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH-HHHhhhhhhhhc
Q 007932          263 LPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI-WLVTLIPSTIWA  341 (584)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  341 (584)
                                                    +.++           .        ..+.+..+..... ............
T Consensus       210 ------------------------------~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (408)
T PRK09874        210 ------------------------------EVVT-----------S--------LKNPKLVLSLFVTTLIIQVATGSIAP  240 (408)
T ss_pred             ------------------------------HHHH-----------h--------CcCCchHHHHHHHHHHHHHHHHHHHH
Confidence                                          0000           0        0000111111111 111111111101


Q ss_pred             cccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHH
Q 007932          342 QINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAI  421 (584)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~  421 (584)
                      ..+.+. ...   ..... ......+.+..+..++.++..+..+++.+|+.+|           +.+..+..+..++++.
T Consensus       241 ~~~~~~-~~~---~~~~~-~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~-----------~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        241 ILTLYV-REL---AGNVS-NIAFISGMIASVPGVAALLSAPRLGKLGDRIGPE-----------KILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHHH-HHH---hccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHHHH
Confidence            111111 100   00000 0000111222333455556666666665554443           2244555555444443


Q ss_pred             HHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHH
Q 007932          422 AYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLN  501 (584)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg  501 (584)
                      ....                     .+.+.+....++.+++.+...+...+++.+..|++.+|+..++++....+|..+|
T Consensus       305 ~~~~---------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~g  363 (408)
T PRK09874        305 MSFV---------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTG  363 (408)
T ss_pred             HHHh---------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhh
Confidence            3332                     1233445566678888888888888888888999999999999999999999999


Q ss_pred             HHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 007932          502 SFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWA  551 (584)
Q Consensus       502 ~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~  551 (584)
                      +.+.+.+.+.                .++...|++.+++.+++.+..+..
T Consensus       364 p~~~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        364 PLMGAAISAN----------------YGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHHhh----------------cchhHHHHHHHHHHHHHHHHHHHH
Confidence            9998777531                134566787877777766554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.90  E-value=2e-22  Score=210.69  Aligned_cols=349  Identities=12%  Similarity=0.033  Sum_probs=219.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI  110 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~  110 (584)
                      ........+.....|.+ +.+.+++.+++|++..+.+++.+.+.++..+++++.|+++||+ |||++++++.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~   83 (377)
T TIGR00890         6 LVGTVIMCFTSGYVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFT   83 (377)
T ss_pred             eHHHHHHHHHhhHHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHH
Confidence            33333333333335544 4455677889999999999999999999999999999999999 999999999999999998


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      +++++                    ++.+.++++|++.|++.+...+.....+.+.+|+       +|+++.++...+.+
T Consensus        84 ~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  136 (377)
T TIGR00890        84 FYAIA--------------------DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYG  136 (377)
T ss_pred             HHHHH--------------------HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcc
Confidence            88887                    4578899999999999998888888888888874       38999999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCc
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSEL  270 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (584)
                      +|..+++.+.+.+.+..+||+.|++.++..++..+..+...++.+++.+++                       .+  ..
T Consensus       137 ~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~--~~  191 (377)
T TIGR00890       137 LGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT-----------------------NI--EV  191 (377)
T ss_pred             hhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcccc-----------------------Cc--cc
Confidence            998887777777777789999999888766555544443322111000000                       00  00


Q ss_pred             cccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHH-HHhhhhhhhhccccceEEE
Q 007932          271 HEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIW-LVTLIPSTIWAQINTLFVK  349 (584)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  349 (584)
                      .+   +              ..++.+                    ...++..+...... ............... +. 
T Consensus       192 ~~---~--------------~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  232 (377)
T TIGR00890       192 SV---K--------------DYTVWE--------------------MLRTPQFWVLYLSFFLNAVSGLLLIGLYKP-YG-  232 (377)
T ss_pred             ch---h--------------hhhHHH--------------------HHcCccHHHHHHHHHHHhHHHHHHHHHHHH-HH-
Confidence            00   0              000000                    00011111111111 111111111111111 10 


Q ss_pred             ecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007932          350 QGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRR  429 (584)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~  429 (584)
                      +    +....   ......+.....+..+++.++..++.||+.||+           .+.++.++.+++........   
T Consensus       233 ~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~~~~~~~~~~~~~~---  291 (377)
T TIGR00890       233 Q----SLGLS---DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-----------TMSIVFGISAVGMAAMLFIP---  291 (377)
T ss_pred             H----HcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hhhHHHHHHHHHHHHHHHcc---
Confidence            1    11110   111233445555666677777777766665542           24556666666655444331   


Q ss_pred             hhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 007932          430 MHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVD  509 (584)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~  509 (584)
                                      .......+...++.+++.+...+....++.|..|++.|+++.|+.+....+|..+++.+.+.+.
T Consensus       292 ----------------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       292 ----------------MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             ----------------cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0111222233445556555555666677889999999999999999999999999999988775

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.90  E-value=6.3e-22  Score=212.23  Aligned_cols=176  Identities=17%  Similarity=0.142  Sum_probs=131.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---Cchhhhhh---HHHHHHHHHHHhhhHhHHHhhcccchhHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH---EDTVSSVR---NVNNWSGVVWITPLLGAYIADTYIGRFWTFTLS  101 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~~~~~~~~---~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  101 (584)
                      +.+....+..+++.+.... .++..+++.++++   .+..+.+.   +.+...++..++++++|+++||+ ||||++.++
T Consensus        22 ~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~   99 (432)
T PRK10406         22 WAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLIS   99 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHH
Confidence            3444555667777877665 5666678888874   45554333   33444555559999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      .++++++.++++++.+..+..            ......+++.|+++|++.|...|...++++|.+|++      +|+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~------~rg~~  161 (432)
T PRK10406        100 VCMMCFGSLVIACLPGYETIG------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEG------RKGFY  161 (432)
T ss_pred             HHHHHHHHHHHhhcCCchhHH------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCC------cccHH
Confidence            999999999988763211000            012346899999999999999999999999999988      59999


Q ss_pred             eeeehhHHhHhHHHHhhhhhhhh--------cccchhHHHHHHHHHHHHH
Q 007932          182 FNWWMFSSFIGALCATLGLVYIQ--------ENLGWGLGYGIPTAGLLFS  223 (584)
Q Consensus       182 ~~~~~~~~~~g~~~g~~~~~~l~--------~~~~~~~~f~~~~~~~~~~  223 (584)
                      .++.+.+.+.|..+++.+...+.        ..+|||++|++.++..++.
T Consensus       162 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        162 ASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            99888888888888877655543        2579999999876654443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=5.2e-22  Score=200.68  Aligned_cols=181  Identities=13%  Similarity=0.084  Sum_probs=157.7

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHH
Q 007932           23 KTGKWKACAFLVGYEAFERMAFYGIQSNL---VNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFT   99 (584)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~   99 (584)
                      .+.+.|.-+.++...++..+++|-+.-.+   .+++.++.++|.+|.|.+.+.+++.+.++-.+.|.++||. +.|+.+-
T Consensus        20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~   98 (448)
T COG2271          20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMA   98 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeeh
Confidence            33444455667777788888888665444   4688899999999999999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccc
Q 007932          100 LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV  179 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (584)
                      +++++.++..++++++                    .+...+.+.-++.|...|.-.|.....++.+++.+      +||
T Consensus        99 ~gLilsai~nil~Gfs--------------------~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~------eRG  152 (448)
T COG2271          99 FGLILSAIVNILFGFS--------------------PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRK------ERG  152 (448)
T ss_pred             HHHHHHHHHHHHHhhh--------------------hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcc------ccC
Confidence            9999999999999998                    45778999999999999999999999999999998      499


Q ss_pred             eeeeeehhHHhHhHHHHhhhh--hhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          180 SFFNWWMFSSFIGALCATLGL--VYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       180 ~~~~~~~~~~~~g~~~g~~~~--~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      +..++++.+-|+|+.+.|.+.  +++..+++||..|++++++.++..++.+..
T Consensus       153 ~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~  205 (448)
T COG2271         153 TWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFL  205 (448)
T ss_pred             ceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999  899888899999999998866555555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.89  E-value=9.9e-22  Score=208.91  Aligned_cols=174  Identities=14%  Similarity=0.095  Sum_probs=140.2

Q ss_pred             chhHHHHHHHHHH---HHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           28 KACAFLVGYEAFE---RMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        28 ~~~~~~~~~~~~~---~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      +..+..+...+.+   .++...+.+.++. +.+++|.+..+.++..+.+.++..++.++.|+++||+ ||||+++++.++
T Consensus        10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~   87 (406)
T PRK15402         10 QALLFPLCLVLFEFATYIANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAF   87 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            3344444443333   3444445555554 4578999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.+++..+                    ++.+.+++.|++.|++.+...+...+.+.|.+|++      +|.++.++
T Consensus        88 ~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~  141 (406)
T PRK15402         88 FILTCLAILLA--------------------QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEA------DAIKITAL  141 (406)
T ss_pred             HHHHHHHHHHH--------------------ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChh------HHHHHHHH
Confidence            88888887776                    45777899999999999988888899999999887      47888888


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ......+|..++|.+++++.+..+|++.|++.++..++..+..+.
T Consensus       142 ~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK15402        142 MANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWR  186 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999988889999999877776655554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.89  E-value=6.9e-22  Score=209.07  Aligned_cols=174  Identities=16%  Similarity=0.245  Sum_probs=151.0

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHH
Q 007932           22 SKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLS  101 (584)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  101 (584)
                      .++.+|+.+....+..+...+..+......+ .+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~   83 (405)
T TIGR00891         6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTS   83 (405)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHH
Confidence            4467777777888888888888777766555 56789999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      .++.+++.+++.++                    ++.+.+++.|++.|++.+...+...+++.|.+|++      +|+++
T Consensus        84 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~  137 (405)
T TIGR00891        84 IVLFSAGTLACGFA--------------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKA  137 (405)
T ss_pred             HHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHH
Confidence            99999988888776                    45778999999999999999999999999999987      59999


Q ss_pred             eeeehhHHhHhHHHHhhhhhhhhcccc--hhHHHHHHHHHHHHH
Q 007932          182 FNWWMFSSFIGALCATLGLVYIQENLG--WGLGYGIPTAGLLFS  223 (584)
Q Consensus       182 ~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~f~~~~~~~~~~  223 (584)
                      .++.+...++|..+++.+++.+.+..+  |++.|++.++..++.
T Consensus       138 ~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       138 SGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            999999999999999999999887666  999998765544443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.89  E-value=2.6e-21  Score=211.48  Aligned_cols=184  Identities=13%  Similarity=0.100  Sum_probs=139.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-----LHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTL  100 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~  100 (584)
                      +++.+.+..+..+.+.+....+....+. +.++     .+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.+
T Consensus        14 ~~~~~~~~~~~~~~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~   91 (502)
T TIGR00887        14 HFRAIVIAGVGFFTDSYDLFCISLVTKM-LGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHH
Confidence            3444555555566666655544444443 3322     244566778999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccce
Q 007932          101 SSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS  180 (584)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (584)
                      +.++..++.++++.+.+              .....+.+.++++|+++|++.|...+..+++++|.+|++      +|++
T Consensus        92 ~~~~~~v~~~~~~~~~~--------------~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~  151 (502)
T TIGR00887        92 ELIIMIIATVASGLSPG--------------SSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGA  151 (502)
T ss_pred             HHHHHHHHHHHHHHccC--------------cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHH
Confidence            99999999888877531              000123578999999999999999999999999999998      5999


Q ss_pred             eeeeehhHHhHhHHHHhhhhhhhhc-----------------------ccchhHHHHHHHHHHHHHHHHHHHhC
Q 007932          181 FFNWWMFSSFIGALCATLGLVYIQE-----------------------NLGWGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       181 ~~~~~~~~~~~g~~~g~~~~~~l~~-----------------------~~~~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      +.++.+....+|..+++.++.++..                       .++||++|.+.++..++..+..+..+
T Consensus       152 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lp  225 (502)
T TIGR00887       152 MMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIP  225 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            9999999999999999887765431                       24799999877766655555444443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.89  E-value=1.1e-21  Score=213.85  Aligned_cols=176  Identities=16%  Similarity=0.113  Sum_probs=132.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh-hhh-----HHHHHHHHHHHhhhHhHHHhhcccchhHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS-SVR-----NVNNWSGVVWITPLLGAYIADTYIGRFWTFTL  100 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~-~~~-----~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~  100 (584)
                      +|.++...+..+++.+.+..+ .+...++.++++.+... ..+     +.+...++..+++++.|+++||+ |||+++.+
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~   92 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVY-GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAI   92 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHH
Confidence            455666677888888876654 44556778887643322 122     24667788999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccce
Q 007932          101 SSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS  180 (584)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (584)
                      ++++++++.++++++.+..++.            -.....+++.|+++|++.|+..+...++++|++|++      +|++
T Consensus        93 ~~~l~~i~~~~~a~~~~~~~~g------------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~------~Rg~  154 (490)
T PRK10642         93 TIVIMSISTFCIGLIPSYATIG------------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDR------KRGF  154 (490)
T ss_pred             HHHHHHHHHHHHHhcccHHHHH------------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCC------CCcH
Confidence            9999999999999874311100            000124899999999999999999999999999988      5999


Q ss_pred             eeeeehhHHhHhHHHHhhhhhhhh--------cccchhHHHHHHHHHHHH
Q 007932          181 FFNWWMFSSFIGALCATLGLVYIQ--------ENLGWGLGYGIPTAGLLF  222 (584)
Q Consensus       181 ~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~~~~~f~~~~~~~~~  222 (584)
                      +.++...+..+|..+|+.+...+.        ..+|||++|++.++..++
T Consensus       155 ~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~  204 (490)
T PRK10642        155 MGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII  204 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence            999988888888888876554432        257999999986654433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.89  E-value=1e-21  Score=211.91  Aligned_cols=156  Identities=12%  Similarity=0.086  Sum_probs=125.1

Q ss_pred             HHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007932           49 SNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNG  128 (584)
Q Consensus        49 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (584)
                      ....+|+.++ |++..+.+++.+.+.++..++++++|+++||+ |||++++++.++.+++.+++++...           
T Consensus        49 ~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~-----------  115 (452)
T PRK11273         49 ALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPW-----------  115 (452)
T ss_pred             HHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhc-----------
Confidence            3444577777 99999999999999999999999999999999 9999999999999988887776521           


Q ss_pred             CcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHH-HHhhhhhhhhccc
Q 007932          129 ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGAL-CATLGLVYIQENL  207 (584)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~  207 (584)
                           ...+.+.+++.|++.|++.|...+...+.+.|++|++      +|++++++++.+.++|+. .+|+++..+....
T Consensus       116 -----~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  184 (452)
T PRK11273        116 -----ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN  184 (452)
T ss_pred             -----ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence                 0135667889999999999998888888899999887      599999999999999875 4555443443445


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q 007932          208 GWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       208 ~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +||+.|++.++..++..++..
T Consensus       185 gw~~~f~i~~~~~~~~~~l~~  205 (452)
T PRK11273        185 DWHAALYMPAFAAILVALFAF  205 (452)
T ss_pred             cHHHHHHHHHHHHHHHHHHHH
Confidence            899999988776555444333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.89  E-value=2.2e-21  Score=204.65  Aligned_cols=173  Identities=12%  Similarity=0.027  Sum_probs=151.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      ++.++.+.+..+......+...+.+|. +.+++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~   79 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTE-LAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCV   79 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHH-HHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHH
Confidence            466777788888888888877777765 4678999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.++++.+                    ++.+.+++.|++.|++.+...+.....+.|++|++      +|+++++...
T Consensus        80 ~~~~l~~~~--------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  133 (382)
T PRK10091         80 IGNAMFTLS--------------------SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMV  133 (382)
T ss_pred             HHHHHHHHh--------------------CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHH
Confidence            999888876                    45788999999999999998888888899998876      5889999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIF  227 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~  227 (584)
                      .+..+|..++|.+++++.+..+||+.|++.++..++..+..
T Consensus       134 ~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~  174 (382)
T PRK10091        134 SGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASI  174 (382)
T ss_pred             HHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988999999998887655544433

>PRK03699 putative transporter; Provisional

Probab=99.89  E-value=5.9e-21  Score=202.22  Aligned_cols=175  Identities=9%  Similarity=0.064  Sum_probs=147.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      .+++|..+...+..++.....+..-..++. +.+++|+|..+.+++.+.+.++..++++++|+++||+ ||||+++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~   80 (394)
T PRK03699          3 SNRIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFA   80 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence            456677777777777777776666665555 5678999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      +..++.+++.++                    ++.+.+++.|+++|++.|...+...+++.|.+|++      +|+++.+
T Consensus        81 ~~~i~~~l~~~~--------------------~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~  134 (394)
T PRK03699         81 LMILAVAGLMFS--------------------HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLL  134 (394)
T ss_pred             HHHHHHHHHHHc--------------------chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHH
Confidence            999998888876                    45778899999999999999999999999999876      5899888


Q ss_pred             eehhHHhHhHHHHhhhhhhhh-cccchhHHHHHHHHHHHHHHHH
Q 007932          184 WWMFSSFIGALCATLGLVYIQ-ENLGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~-~~~~~~~~f~~~~~~~~~~~~~  226 (584)
                      ..+...++|+.++|.+.+++. +..+||+.|.+.++..++..++
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        135 FTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            888888999999999888875 4579999999877665544433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.88  E-value=2.3e-22  Score=208.39  Aligned_cols=166  Identities=19%  Similarity=0.243  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932           34 VGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLT  113 (584)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~  113 (584)
                      +++.++..++.....+.++.++.+++|.+..+.+++.+.+.++..++.++.|+++||+ ||||+++++.++.+++..++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~   80 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA   80 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence            4556666677666667777688899999999999999999999999999999999998 999999999999999966655


Q ss_pred             HhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhH
Q 007932          114 MAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGA  193 (584)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  193 (584)
                      ++                    .+.+.++++|++.|++.+...+...+++.|.+|++      +|++++++.+...++|.
T Consensus        81 ~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~  134 (352)
T PF07690_consen   81 FA--------------------SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE------ERGRAFGILSAGFSLGS  134 (352)
T ss_dssp             HH--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC------CHHHHHHHHHHHHHHHH
T ss_pred             hh--------------------hhHHHHhhhccccccccccccccccccccccchhh------hhhhccccccchhhhhh
Confidence            54                    23558999999999999999999999999999997      59999999999999999


Q ss_pred             HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 007932          194 LCATLGLVYIQENLGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       194 ~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~  226 (584)
                      .++|.+++++.+..+|++.|++.++..++..++
T Consensus       135 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  135 ILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhccccccccccccchhhhhhhh
Confidence            999999999998899999999988887777654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.88  E-value=3.5e-21  Score=201.84  Aligned_cols=169  Identities=10%  Similarity=0.028  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHH-HHHHHHHHHHHH
Q 007932           34 VGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTL-SSLIYVLGMILL  112 (584)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~-~~~~~~~~~~~~  112 (584)
                      .+..++..++.....+.++.|+++++|.|+.+.+++.+.+.+...+..++.|+++||+ ||||.+++ +.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence            3457777888888889999999999999999999999999999999999999999999 99987665 445555566666


Q ss_pred             HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee--eeeehhHHh
Q 007932          113 TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF--FNWWMFSSF  190 (584)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~  190 (584)
                      ..+                    ++.+.+++.|+++|.+.+...|...++..|..|++      +|.+.  .+..+...+
T Consensus        82 ~~~--------------------~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  135 (375)
T TIGR00899        82 AWN--------------------RNYFLLLVLGVLLSSFASTANPQLFALAREHADRT------GREAVMFSSVMRAQIS  135 (375)
T ss_pred             Hhc--------------------chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc------chhhHHHHHHHHHHHh
Confidence            654                    45677888898888887777888888888877655      34433  567777889


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +|..+||.+++++.+.++||+.|++.++..++..+..+.
T Consensus       136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998899999999988765555554444

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.88  E-value=9.4e-22  Score=213.80  Aligned_cols=399  Identities=12%  Similarity=0.062  Sum_probs=239.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      +..+++..+...+......... +++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~   81 (485)
T TIGR00711         4 TIVLMLGTFMAVLDSTIVNVAI-PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS   81 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence            4445555666666655554444 455778999999999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      ++++.+                    ++.+.++++|+++|++.+...+...+++.|.+|++      +|+++++++....
T Consensus        82 ~~~~~~--------------------~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~  135 (485)
T TIGR00711        82 LLCGVA--------------------PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTV  135 (485)
T ss_pred             HHHhCc--------------------CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHH
Confidence            888876                    45778999999999999999999999999999987      5999999999999


Q ss_pred             hHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhH--H----HHHHHHhhccccC
Q 007932          190 FIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLI--R----VPIAAFRNRKIQL  263 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~  263 (584)
                      .+|..+||.+++++.++++|++.|++.+...++..++.....++.+++..++ .+.....  .    ..........   
T Consensus       136 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~g~~l~~~~~~~~~~~~~~~~---  211 (485)
T TIGR00711       136 LVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASEN-FDFLGLLLLSVGLGSLLYGLSEGP---  211 (485)
T ss_pred             HHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCC-CcHHHHHHHHHHHHHHHHHHhhCC---
Confidence            9999999999999999999999999887765555544444333211111111 1100000  0    0000000000   


Q ss_pred             CCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHH-HHHHHHHhhhhhhhhcc
Q 007932          264 PDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLG-MALIWLVTLIPSTIWAQ  342 (584)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  342 (584)
                        +...... .... .........   ...+... ..+.   ..+.   ...+.-..+.+.. ....+.....++.....
T Consensus       212 --~~~~~~~-~~~~-~~~~~~~~~---~~~~~~~-~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (485)
T TIGR00711       212 --ERGWFDS-NEIL-ILSITGLVA---IIAFVVW-ELTD---DNPL---VDLRLFKYRNFTIGCVYMSLLGLGLYGSFYL  277 (485)
T ss_pred             --CCCCCCc-hHHH-HHHHHHHHH---HHHHHHH-HHcC---CCCc---cCHHHHcCCChHHHHHHHHHHHHHHHHHHHH
Confidence              0000000 0000 000000000   0000000 0000   0000   0000000111111 11111111111111111


Q ss_pred             ccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007932          343 INTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA  422 (584)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~  422 (584)
                      .+.++ .+.    ....   ....+.+.....++.+++.++..++.+|..+|           +.+.++..+.+++....
T Consensus       278 ~p~~~-~~~----~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~-----------~~~~~g~~~~~~~~~~~  338 (485)
T TIGR00711       278 LPLYL-QQV----LGYT---ALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR-----------KLVTIGLILYAVGFYWR  338 (485)
T ss_pred             HHHHH-HHh----cCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH-----------HHHHHHHHHHHHHHHHH
Confidence            11111 110    0100   11223444455566777777777665554444           23566777777666655


Q ss_pred             HHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHH
Q 007932          423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNS  502 (584)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~  502 (584)
                      ....                 ....+.+......++.|++.+...++......+..|++.+|.+.|+.++.+.+|+.+|+
T Consensus       339 ~~~~-----------------~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~  401 (485)
T TIGR00711       339 AFTF-----------------TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGT  401 (485)
T ss_pred             hccC-----------------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence            4220                 01123344555677888998888877777777889999999999999999999999999


Q ss_pred             HHHHHhhh
Q 007932          503 FLVTLVDK  510 (584)
Q Consensus       503 ~l~~~i~~  510 (584)
                      .+.+.+.+
T Consensus       402 ~i~g~~~~  409 (485)
T TIGR00711       402 ALITTILT  409 (485)
T ss_pred             HHHHHHHH
Confidence            99887754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.88  E-value=3.1e-21  Score=206.27  Aligned_cols=167  Identities=18%  Similarity=0.146  Sum_probs=144.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      .+++.+....+..+...+..+.. .+...++.+++|.++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~   92 (426)
T PRK12307         15 PQKNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVA   92 (426)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Confidence            34455666666666666666655 4444567789999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      .+++.++++++                    .+.+.++++|++.|++.|...+....++.|.+|++      +|+++.++
T Consensus        93 ~~~~~~~~~~~--------------------~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~  146 (426)
T PRK12307         93 YSVGTGLSGLA--------------------SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAF  146 (426)
T ss_pred             HHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhH
Confidence            99999888877                    45778999999999999999999999999999988      59999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHH
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAG  219 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~  219 (584)
                      +..+.++|..+++.+.+.+.+..+||+.|++..+.
T Consensus       147 ~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~  181 (426)
T PRK12307        147 LVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP  181 (426)
T ss_pred             HHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence            99999999999999999998889999999875443

>TIGR00895 2A0115 benzoate transport

Probab=99.88  E-value=2.1e-21  Score=204.61  Aligned_cols=175  Identities=14%  Similarity=0.176  Sum_probs=142.7

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      .|+.+...+...+...+..+.. ....+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~   92 (398)
T TIGR00895        15 QWRAIILSFLIMLMDGYDLAAM-GFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLF   92 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHH
Confidence            3344444444444444444433 4445566778999999999999999999999999999999999 9999999999988


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.+++...                    ++.+.+++.|++.|++.+...+...+++.|.+|++      +|++++++.
T Consensus        93 ~~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~  146 (398)
T TIGR00895        93 SVFTLLCALA--------------------TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLM  146 (398)
T ss_pred             HHHHHHHHHc--------------------cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhH
Confidence            8888777765                    45777899999999999999999999999999987      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      ....++|..+++.+++++.+..+|++.|++.++..++..+..+
T Consensus       147 ~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  189 (398)
T TIGR00895       147 FCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLM  189 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHH
Confidence            9999999999999999999989999999988655444433333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.88  E-value=4.3e-21  Score=198.20  Aligned_cols=347  Identities=19%  Similarity=0.201  Sum_probs=254.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI  110 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~  110 (584)
                      +.+....+...++.+...+..+.|. +++|.+..+.+++.+...++..++.++.|+++||+ ||||.+.++.++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~   79 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLA-EDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSL   79 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHH
Confidence            3455667778888888888887776 46799999999999999999999999999999999 999999999999999988


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      ++...                    ++.+.+++.|++.|++.+...+...+++.|.+|++      +|++.+++.+...+
T Consensus        80 ~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  133 (352)
T cd06174          80 LLAFA--------------------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFG  133 (352)
T ss_pred             HHHHh--------------------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHH
Confidence            88876                    45778999999999999999999999999999987      59999999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCc
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSEL  270 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (584)
                      +|..++|.+++.+.+..+|++.|++.++..++..+.....+       + .      .                      
T Consensus       134 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~------~----------------------  177 (352)
T cd06174         134 LGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL-------R-L------L----------------------  177 (352)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------H-H------H----------------------
Confidence            99999999999999988999999988877666555443321       0 0      0                      


Q ss_pred             cccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceEEEe
Q 007932          271 HEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQ  350 (584)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (584)
                                                                        ..  .....+.............+.+. .+
T Consensus       178 --------------------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~-~~  204 (352)
T cd06174         178 --------------------------------------------------LL--LALAFFLLSFGYYGLLTYLPLYL-QE  204 (352)
T ss_pred             --------------------------------------------------HH--HHHHHHHHHhHHHHHHHHHHHHH-HH
Confidence                                                              00  00000111111111111111111 10


Q ss_pred             cccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007932          351 GTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRM  430 (584)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~  430 (584)
                      ..    ...   ....+.+.....++..++.++..++.+|..+|+          ..+.++..+..++.......     
T Consensus       205 ~~----~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~~~~~-----  262 (352)
T cd06174         205 VL----GLS---AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRR----------LLLLIGLLLAALGLLLLALA-----  262 (352)
T ss_pred             hc----CCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHHh-----
Confidence            00    000   122334555566677777777777665555442          04667777777777666554     


Q ss_pred             hhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 007932          431 HVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDK  510 (584)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~  510 (584)
                                      .+.+.......+.+++.....+....++.+..|++.|++.+|+.+....++..+++.+.+.+.+
T Consensus       263 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         263 ----------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             ----------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                            2345667778889999999999999999999999999999999999999999999999988753


Q ss_pred             hhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHH
Q 007932          511 VTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAF  548 (584)
Q Consensus       511 ~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~  548 (584)
                                      ..++...|.+.+++.+++.+..
T Consensus       327 ----------------~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         327 ----------------TGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             ----------------ccCcchHHHHHHHHHHHHHHHh
Confidence                            1133455777777776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09952 shikimate transporter; Provisional

Probab=99.88  E-value=1.2e-20  Score=202.71  Aligned_cols=177  Identities=11%  Similarity=0.020  Sum_probs=133.2

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--CCchhhhhhHH-----HHHHHHHHHhhhHhHHHhhcccchhHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL--HEDTVSSVRNV-----NNWSGVVWITPLLGAYIADTYIGRFWT   97 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--~~~~~~~~~~~-----~~~~~~~~~~~~~~G~laD~~~Grk~~   97 (584)
                      .++|.+....+..+++.+....+....+.+..+++  +.++. .+++.     +...++..++.++.|+++||+ |||++
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~   96 (438)
T PRK09952         19 RARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRM   96 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHH
Confidence            34566677777888888887766656666666555  66665 34443     234455678888899999999 99999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcc
Q 007932           98 FTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNL  177 (584)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (584)
                      ++++.++++++.++++++.+..+..            ......+++.|+++|++.|...+...+++.|.+|++      +
T Consensus        97 l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~  158 (438)
T PRK09952         97 LMLTVWMMGIATALIGLLPSFSTIG------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN------K  158 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHH------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC------C
Confidence            9999999999999999874211000            001225888999999999999999999999999988      5


Q ss_pred             cceeeeeehhHHhHhHHHHhhhhhhhh--------cccchhHHHHHHHHHHH
Q 007932          178 KVSFFNWWMFSSFIGALCATLGLVYIQ--------ENLGWGLGYGIPTAGLL  221 (584)
Q Consensus       178 r~~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~~~~~f~~~~~~~~  221 (584)
                      |+...+..+.+..+|..++..+..++.        +.+|||++|++.++..+
T Consensus       159 rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l  210 (438)
T PRK09952        159 KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVL  210 (438)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHH
Confidence            899888888888888888876666554        25799999998766543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.88  E-value=9e-21  Score=200.66  Aligned_cols=165  Identities=13%  Similarity=0.060  Sum_probs=136.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |..+.+....++..++.......++.. .++++.++.+.+++.+.+.+...++.+++|+++||+ ||||+++++.++.++
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~   80 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL   80 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence            445666677777777655554545544 578899999999999999999999999999999999 999999999999988


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +.+++....                    +   .++.|+++|++.+...|...+++.|.+|++      +|++++++...
T Consensus        81 ~~~~~~~~~--------------------~---~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~  131 (393)
T PRK11195         81 GCLLMLFGI--------------------H---PLLAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEG  131 (393)
T ss_pred             HHHHHHHHH--------------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHH
Confidence            887776652                    2   277899999999999999999999999987      69999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSL  224 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~  224 (584)
                      ..++|..+||.++|++.+. .|+..+.+.+...+++.
T Consensus       132 ~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~  167 (393)
T PRK11195        132 STIAAILLGTVLGGALADP-HAEAALAVCALIYLLAA  167 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            9999999999999999884 47777766655444443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.87  E-value=8.1e-21  Score=199.74  Aligned_cols=175  Identities=14%  Similarity=0.106  Sum_probs=147.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      ++.++.+....+....+.....+..| ++.+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++.++.++..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~   81 (385)
T TIGR00710         4 KAFALLLGCLSILGPLGIDMYLPAFP-EIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA   81 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence            34445555555555566555555554 45778999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.+++...                    ++.+.+++.|++.|++.+...+...+++.|.+|++      +|++++++.+
T Consensus        82 ~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  135 (385)
T TIGR00710        82 LSSLGLALS--------------------NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILM  135 (385)
T ss_pred             HHHHHHHHH--------------------ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHH
Confidence            988888776                    45778999999999999999999999999999977      5999999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ...++|..+++.+++++.+.++|++.|++.++..++..+..+.
T Consensus       136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999899999999877765555544444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00898 2A0119 cation transport protein

Probab=99.87  E-value=6.2e-21  Score=208.71  Aligned_cols=148  Identities=11%  Similarity=0.143  Sum_probs=128.8

Q ss_pred             HhhhhcCCc---hhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 007932           54 YLTSQLHED---TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGIC  130 (584)
Q Consensus        54 yl~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (584)
                      .+.++++++   ..+.++..+.+.++..++.++.|+++||+ |||++++++.++..++.++++++               
T Consensus       114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~---------------  177 (505)
T TIGR00898       114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFS---------------  177 (505)
T ss_pred             cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHc---------------
Confidence            456789998   88999999999999999999999999998 99999999999999988888876               


Q ss_pred             CCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchh
Q 007932          131 SKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWG  210 (584)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~  210 (584)
                           ++.+.+++.|++.|++.+...+...+++.|.+|++      +|+.+.++...+..+|.++++.++..+.+   ||
T Consensus       178 -----~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr  243 (505)
T TIGR00898       178 -----PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK------QRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WR  243 (505)
T ss_pred             -----ccHHHHHHHHHHHHhhccchHHHHHHHhheecChh------hhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH
Confidence                 56788999999999999999999999999999988      58999999888999999999888766643   99


Q ss_pred             HHHHHHHHHHHHHHHHHHHhC
Q 007932          211 LGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       211 ~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      +.|++.++..++..+..++.+
T Consensus       244 ~~~~~~~i~~~~~~~~~~~~~  264 (505)
T TIGR00898       244 WLQLAVSLPTFLFFLLSWFVP  264 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC
Confidence            999988877666555554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.87  E-value=6.9e-21  Score=207.82  Aligned_cols=168  Identities=18%  Similarity=0.232  Sum_probs=144.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      +.+|+.+..+.+..+...+......... .++.+++|++..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHH
Confidence            3455666666666666666665554444 566789999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      +.+++.+++.+.                    .+.+.+++.|++.|++.+...+...+++.|.+|++      +|+++++
T Consensus        94 ~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~  147 (496)
T PRK03893         94 LFSVGTLACGFA--------------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASG  147 (496)
T ss_pred             HHHHHHHHHHHH--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHH
Confidence            999998888876                    45778999999999999999999999999999987      5899999


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHH
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAG  219 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~  219 (584)
                      +.....++|..++|.+.+++.+.++||+.|++..+.
T Consensus       148 ~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~  183 (496)
T PRK03893        148 FLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            999999999999999999999999999999875443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.87  E-value=2.9e-20  Score=196.80  Aligned_cols=183  Identities=11%  Similarity=0.062  Sum_probs=131.5

Q ss_pred             cccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHH-HHHHhhhHhHHHhhcccchhHHHH
Q 007932           21 SSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSG-VVWITPLLGAYIADTYIGRFWTFT   99 (584)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grk~~~~   99 (584)
                      .+.+...+..+.+.+..++..++.....+.++.|+.+++|.|..+.|++.+...+ +..+.++++|+ +||+ ||||.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~   85 (393)
T PRK15011          8 SSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLI   85 (393)
T ss_pred             ccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHH
Confidence            3334445667777888999999999899999999999999999999999776655 55556655666 9999 9998755


Q ss_pred             -HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccc
Q 007932          100 -LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLK  178 (584)
Q Consensus       100 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r  178 (584)
                       .+.++.+++..+++++                    .+.+.+++.+.+.+...+...|....+..|..+++++    ..
T Consensus        86 ~~~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  141 (393)
T PRK15011         86 VFCCLLGVLACTLFAWN--------------------RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGR----EA  141 (393)
T ss_pred             HHHHHHHHHHHHHHHHh--------------------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccc----hH
Confidence             4455555665555554                    3455555555544444456677777877776654420    11


Q ss_pred             ceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          179 VSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       179 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +...++.+.+.++|..+||.+++++.+++|||..|++.++..++..+..+.
T Consensus       142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~  192 (393)
T PRK15011        142 VMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWL  192 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence            234467788899999999999999999899999999887765555544444

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.87  E-value=4.1e-21  Score=200.86  Aligned_cols=151  Identities=13%  Similarity=0.144  Sum_probs=133.0

Q ss_pred             HHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 007932           51 LVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGIC  130 (584)
Q Consensus        51 ~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (584)
                      ..+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.++               
T Consensus        17 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~---------------   80 (379)
T TIGR00881        17 AMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFS---------------   80 (379)
T ss_pred             hhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHh---------------
Confidence            34577889999999999999999999999999999999999 99999999999999999888876               


Q ss_pred             CCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHh-hhhhhhhcccch
Q 007932          131 SKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCAT-LGLVYIQENLGW  209 (584)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~-~~~~~l~~~~~~  209 (584)
                           .+.+.+++.|++.|++.+...+...+++.|.+|++      +|++++++.+.+.++|..+++ .+++.+.+..+|
T Consensus        81 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  149 (379)
T TIGR00881        81 -----TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW  149 (379)
T ss_pred             -----hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence                 45778999999999999999999999999999987      599999999999999999999 577777777899


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 007932          210 GLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       210 ~~~f~~~~~~~~~~~~~~~  228 (584)
                      ++.|++.++..++..+..+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881       150 HWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             hhHHHHHHHHHHHHHHHHh
Confidence            9999887766555444433

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=2.1e-20  Score=197.11  Aligned_cols=156  Identities=14%  Similarity=0.094  Sum_probs=138.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      .|.++.+.+..++...+...+.+.+|.|.+ ++|.|..+.|++.+.+.++..+++++.|+++||+ ||||++.++.++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence            466888888899999988888899888876 6799999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++..+++.+                    ++.+.++++|+++|++.+...+...+.+.+..+++      +|++++++++
T Consensus        83 ~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  136 (381)
T PRK03633         83 AGCAGLGLM--------------------VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYM  136 (381)
T ss_pred             HHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHH
Confidence            998888776                    45778999999999999998888888788888776      5899999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchh
Q 007932          187 FSSFIGALCATLGLVYIQENLGWG  210 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~  210 (584)
                      .+.++|..+||.+++.+.+...+.
T Consensus       137 ~~~~~g~~~g~~~~~~l~~~~~~~  160 (381)
T PRK03633        137 MVYYLGTVLGQLLVSKVSTELMSV  160 (381)
T ss_pred             HHHHHHHHHHHHHHhcccccccch
Confidence            999999999999999987754333

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.87  E-value=8.5e-22  Score=200.90  Aligned_cols=183  Identities=13%  Similarity=0.099  Sum_probs=164.0

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHH
Q 007932           23 KTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSS  102 (584)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  102 (584)
                      .+..++.+.+++.+++.+++.-|.+-... .-.++.+|+++.+.|++...+.++..+++|+.|+|+||| +||+++.+|.
T Consensus        28 ~~~~~~~l~il~~vnlmny~Dr~~iagv~-~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~  105 (493)
T KOG1330|consen   28 MKSPTLTLVILCLVNLMNYADRYTIAGVL-KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGI  105 (493)
T ss_pred             cccchHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHH
Confidence            34555778888999999999999886644 345788999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      .++.++.+.++++                    .++|.+.++|.+.|+|.+...|+++++++|.||+.      +|++.+
T Consensus       106 ~iW~~Av~~~~fs--------------------~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~  159 (493)
T KOG1330|consen  106 FIWTLAVFASGFS--------------------NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVL  159 (493)
T ss_pred             HHHHHHHHHHHHH--------------------HHHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHH
Confidence            9999999999988                    46889999999999999999999999999999988      699999


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHhCCc
Q 007932          183 NWWMFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFYIGSPI  233 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~  233 (584)
                      +++|+..++|..+|.++++.+....+ |||.|...+++.++..++.+++.++
T Consensus       160 ~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  160 GIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             HHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence            99999999999999999999988776 9999999998877666666665443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.87  E-value=1.8e-20  Score=200.29  Aligned_cols=391  Identities=10%  Similarity=-0.066  Sum_probs=222.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..|.+....++...+++.+.++++.|+++++|+|+.+.+++.+.+.+...+++++.|+++||+ ||||+++++....++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~~   88 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLLV   88 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            5677777788888888888899999999999999999999999999999999999999999999 999999887666555


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHH-HHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIA-FFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      +...+......                 .... -...+..+.++..+...+.....+.++.+...    ++++..++..+
T Consensus        89 ~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~g~~~  147 (420)
T PRK09528         89 LFGPFFIYVFA-----------------PLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVS----RRSGFEYGRAR  147 (420)
T ss_pred             HHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHH----hhccccchhhH
Confidence            44322211000                 0000 01112222233333322222222333322111    03677888888


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCC
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDN  266 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (584)
                      ...++|..++|.+++++.+ .+|+.+|++.++..++..+..+...++.+++ ++.                 +  +.+..
T Consensus       148 ~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~--~~~~~  206 (420)
T PRK09528        148 MWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPST-AKV-----------------A--NALGA  206 (420)
T ss_pred             HhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccch-hhh-----------------c--cchhc
Confidence            8999999999999999876 5899999887776655554444433221100 000                 0  00000


Q ss_pred             CCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHH-HHhhhhhhhhccccc
Q 007932          267 PSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIW-LVTLIPSTIWAQINT  345 (584)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  345 (584)
                             +  ++          .  .++.+....                 -+++.++...... .....+.....+.+.
T Consensus       207 -------~--~~----------~--~~~~~~~~~-----------------l~~~~~~~l~l~~~~~~~~~~~~~~~~~~  248 (420)
T PRK09528        207 -------N--AS----------A--VSLKDALAL-----------------LKLPKFWFLVLYVIGVACFYDVFDQQFPN  248 (420)
T ss_pred             -------c--cc----------c--ccHHHHHHH-----------------ccCCCeEeehHHHHHHHHHHHHHHHHHHH
Confidence                   0  00          0  000000000                 0001111111111 111111112122222


Q ss_pred             eEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007932          346 LFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAV  425 (584)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~  425 (584)
                      +.....  .+...+   ....+.+..+..+...++.++.+++.+|+.+|+           .+..+.++.+++....+..
T Consensus       249 ~~~~~~--~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~~~~~~~l~~~~~~l~~~~  312 (420)
T PRK09528        249 FFASFF--ATPEQG---TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-----------ALLLAGTIMAVRIIGSGFA  312 (420)
T ss_pred             HHHHHH--hccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-----------hhHHHHHHHHHHHHHHHhc
Confidence            211110  000100   011223444445555566666666655555442           2556666666666555543


Q ss_pred             HHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHH-HHHHHhHHHHHHHHH
Q 007932          426 EVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTF-FTSGIGVGNFLNSFL  504 (584)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~l  504 (584)
                                           .+.++++....+.+++.....+....++.+..|++.+++..++ +++...+|+.+++.+
T Consensus       313 ---------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~  371 (420)
T PRK09528        313 ---------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTL  371 (420)
T ss_pred             ---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHH
Confidence                                 2344556666777888777777778888899999999988765 667788999999988


Q ss_pred             HHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhh
Q 007932          505 VTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWAS  552 (584)
Q Consensus       505 ~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~  552 (584)
                      .+.+.+..                ++...|.+.+++.++..++.+...
T Consensus       372 ~G~l~~~~----------------G~~~~f~~~~~~~~i~~~~~~~~~  403 (420)
T PRK09528        372 AGNLYDSI----------------GFQGTYLILGGIVLLFTLISVFTL  403 (420)
T ss_pred             HHHHHHhh----------------CchHHHHHHHHHHHHHHHHHHHHh
Confidence            87765422                344567777776666555444433

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.86  E-value=3.3e-20  Score=196.40  Aligned_cols=173  Identities=14%  Similarity=0.083  Sum_probs=146.1

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      +.+|.++.......+..+......+.+|.+ .+++|.|+.+.+++.+.+.++..++.++.|+++||+ ||||+++++.++
T Consensus         5 ~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~   82 (394)
T PRK11652          5 RNVNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSI   82 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHH
Confidence            455777777777777777777666666544 578999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.+++...                    ++.+.+++.|++.|++.+...+....+..|.++++      +++++.++
T Consensus        83 ~~~~~~~~~~~--------------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~  136 (394)
T PRK11652         83 FILGTLVALFA--------------------HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSL  136 (394)
T ss_pred             HHHHHHHHHHH--------------------ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHH
Confidence            88888887765                    45778999999999999887788888888888876      58888889


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLV  225 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~  225 (584)
                      .+.+..++..++|.+++++.+..||++.|++.++..++..+
T Consensus       137 ~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        137 LNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            89999999999999999999888999999987765444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.86  E-value=2e-20  Score=198.16  Aligned_cols=189  Identities=12%  Similarity=0.002  Sum_probs=137.8

Q ss_pred             CCccccCCCc---chhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc
Q 007932           18 PVLSSKTGKW---KACAFLVGYEAFERMAFYGIQSNLVNYLTS-QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG   93 (584)
Q Consensus        18 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G   93 (584)
                      |..|..+.+.   |.++...+......+. +...+.+...+.+ ++|+|..|.+++.+++.++..++.++.|++.||+ |
T Consensus        21 ~~~w~~~~~~~a~r~l~~s~~~f~~~F~~-w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G   98 (462)
T PRK15034         21 PAFWENKGKHIARRNLWISVSCLLLAFCV-WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-G   98 (462)
T ss_pred             hHHHhhcCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence            4445555444   5565555554444444 4444444555544 8999999999999999999999999999999999 9


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChh
Q 007932           94 RFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPY  173 (584)
Q Consensus        94 rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~  173 (584)
                      .|+++.++.++..+.+++++++.+.               ..++.+.+++.|++.|++ |...+.....+++++|++   
T Consensus        99 ~R~v~~~~~ll~~i~~~~~~~a~~~---------------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~---  159 (462)
T PRK15034         99 GRRWTVFSTAILIIPCVWLGIAVQN---------------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA---  159 (462)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHcc---------------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh---
Confidence            9999999999999998888875210               014578899999999998 778888999999999988   


Q ss_pred             hhcccceeeeeehhHHhHhHHHHhhhhhhhh-----c-------------ccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          174 ERNLKVSFFNWWMFSSFIGALCATLGLVYIQ-----E-------------NLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       174 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~-----~-------------~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                         +|+++.+++....|+|..+++++...+.     .             ..+|+..+++..+..++..+..++.
T Consensus       160 ---~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~  231 (462)
T PRK15034        160 ---KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG  231 (462)
T ss_pred             ---HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               6999999997777888876665554432     2             2346666666666555554444443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.86  E-value=3.1e-21  Score=205.51  Aligned_cols=368  Identities=14%  Similarity=0.120  Sum_probs=245.1

Q ss_pred             hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcch
Q 007932           58 QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQ  137 (584)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (584)
                      +++++..+.+++.+.+..|..++++++|+++||+ |-|+++.++.++.++++++..++++                  .+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------~~  127 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------IG  127 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH------------------hc
Confidence            5788899999999999999999999999999999 9999999999999999999999874                  33


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc-cchhHHHHHH
Q 007932          138 IAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN-LGWGLGYGIP  216 (584)
Q Consensus       138 ~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~~~~~f~~~  216 (584)
                      .+.+++.|+++|++.|...|+...+.+++.|+.|      |+++.++.+.+..+|.+++..++|++.+. .||+++|++.
T Consensus       128 ~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~  201 (466)
T KOG2532|consen  128 FYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVF  201 (466)
T ss_pred             chhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHH
Confidence            4478999999999999999999999999999994      99999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCC--Ccchh
Q 007932          217 TAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHS--PAFRC  294 (584)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  294 (584)
                      +...++..++++....+.+.++|.- +..  +    +.-+.                       .++.+....  .+.  
T Consensus       202 g~~g~i~~~~w~~~~~d~P~~h~~i-s~~--E----l~~I~-----------------------~~k~~~~~~~~~~v--  249 (466)
T KOG2532|consen  202 GIVGLIWFILWFLFYSDSPSKHPNI-SEK--E----LKYIE-----------------------KGKSEAHVKKKPPV--  249 (466)
T ss_pred             HHHHHHHHHHHHHHhcCCcccCCCC-CHH--H----HHHHH-----------------------hcccccccCCCCCC--
Confidence            9988887777766554333333221 110  0    00000                       000000000  111  


Q ss_pred             hhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHH-------HhhhhhhhhccccceEEEecccccCCCCCCccc-Cc
Q 007932          295 LDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWL-------VTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRI-PA  366 (584)
Q Consensus       295 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  366 (584)
                                   |           .|++++...++.       ....++...++.|+++       +..++  +.+ .+
T Consensus       250 -------------P-----------~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~-------~~VL~--f~v~~~  296 (466)
T KOG2532|consen  250 -------------P-----------YKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYL-------KEVLG--FDVRET  296 (466)
T ss_pred             -------------C-----------HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHhC--CChhhh
Confidence                         1           123333332222       2333333334444332       22221  222 56


Q ss_pred             cccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHH--HHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCc
Q 007932          367 ASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRL--GVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQI  444 (584)
Q Consensus       367 ~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i--~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (584)
                      +.+.+++.+...+...+.+.+.|++.+| .-   ..+..+++  .++....+++++.+++...                 
T Consensus       297 G~~salP~l~~~~~k~~~g~lsD~l~~~-~l---s~t~~rkifn~i~~~~~ai~l~~l~~~~~-----------------  355 (466)
T KOG2532|consen  297 GFLSALPFLAMAIVKFVAGQLSDRLTFR-IL---SETTVRKIFNTIAFGGPAVFLLVLAFTSD-----------------  355 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhc-cC---chHhHHHHHHhHHHHHHHHHHHeeeecCC-----------------
Confidence            6778888888888888888887777665 11   12333444  5555555655655555410                 


Q ss_pred             cceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCC
Q 007932          445 VPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDN  524 (584)
Q Consensus       445 ~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~  524 (584)
                        .+. +.....+..+++....+......-....-+++.+..+|+.++...++++++|.+.+.+.. .           +
T Consensus       356 --~~~-~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-----------~  420 (466)
T KOG2532|consen  356 --EHR-LLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT-D-----------N  420 (466)
T ss_pred             --Ccc-hHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC-C-----------C
Confidence              011 222222222233333322222222233135889999999999999999999999877642 1           1


Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHhhh
Q 007932          525 LNDCHLDYYYGFLMVISILNLGAFFWAS  552 (584)
Q Consensus       525 ~~~~~~~~~f~~~~~~~~~~~l~~~~~~  552 (584)
                       +......+|.+.+++.+++.+++.++.
T Consensus       421 -t~~eW~~VF~i~a~i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  421 -TREEWRIVFLIAAGILIVGNIIFLFFG  447 (466)
T ss_pred             -CHHHHHHHHHHHHHHHHHhchheeEee
Confidence             123445678899988888887776665

>TIGR00897 2A0118 polyol permease family

Probab=99.86  E-value=9.5e-20  Score=193.49  Aligned_cols=171  Identities=12%  Similarity=-0.005  Sum_probs=141.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      -..||.+....++.++..++.+....+++.|+ +++|.++.+.+++.+.+.++..++.++.|+++||+ ||||++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~   86 (402)
T TIGR00897         9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL   86 (402)
T ss_pred             cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence            45667888888888888888888888888887 57899999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      +..++.+++.....                ...+.+.+++.|++.|++.+...+...+.+.+.+|++      +|+++++
T Consensus        87 ~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g  144 (402)
T TIGR00897        87 LWCVGHAAFIVFGL----------------GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVG  144 (402)
T ss_pred             HHHHHHHHHHHHhc----------------cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHH
Confidence            88888765533210                0134677888999999998887777788888998877      5999999


Q ss_pred             eehhHHhHhH-HHHhhhhhhhhcccchhHHHHHHHH
Q 007932          184 WWMFSSFIGA-LCATLGLVYIQENLGWGLGYGIPTA  218 (584)
Q Consensus       184 ~~~~~~~~g~-~~g~~~~~~l~~~~~~~~~f~~~~~  218 (584)
                      +.+.+.++|. .++|.+++++.+.+||+..++....
T Consensus       145 ~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       145 WFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            9999999996 5889999999888887665554433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.86  E-value=9.2e-20  Score=194.22  Aligned_cols=148  Identities=11%  Similarity=0.101  Sum_probs=130.8

Q ss_pred             hhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCC
Q 007932           55 LTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTS  134 (584)
Q Consensus        55 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (584)
                      +.+++|.+..+.++..+.+.++..+++++.|+++||+ |||++++.+.++..++.+++..+                   
T Consensus        42 i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a-------------------  101 (413)
T PRK15403         42 VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFT-------------------  101 (413)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHc-------------------
Confidence            5678999999999999999999999999999999999 99999999999999998888876                   


Q ss_pred             cchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHH
Q 007932          135 TSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYG  214 (584)
Q Consensus       135 ~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~  214 (584)
                       ++.+.++++|+++|++.+...+....++.|.+|++      ++++.+++.....++|..+||.+++.+.+..|||+.|+
T Consensus       102 -~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~  174 (413)
T PRK15403        102 -TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQT------KGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFA  174 (413)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence             45778999999999998876677778888999987      58899999999999999999999999998889999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007932          215 IPTAGLLFSLVIFYI  229 (584)
Q Consensus       215 ~~~~~~~~~~~~~~~  229 (584)
                      +.++..+++.+..+.
T Consensus       175 ~~~~~~~i~~~~~~~  189 (413)
T PRK15403        175 IIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888776666554333

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.86  E-value=1.1e-19  Score=196.97  Aligned_cols=358  Identities=15%  Similarity=0.110  Sum_probs=234.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |....+.......+++.......++-++. ++.-|+...+++.....+-..+..+++|.++||+ .|||+++.+-++.++
T Consensus        10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~   87 (524)
T PF05977_consen   10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL   87 (524)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence            33444555555666665555454554444 5567889999999999999999999999999999 999999999888777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      ..+.+++.....               ..+.+.+++..++.|++.+...|+.++++.|++|++      +...+.++.+.
T Consensus        88 ~~~~L~~l~~~~---------------~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~------~L~~A~al~s~  146 (524)
T PF05977_consen   88 VALLLAVLAFFG---------------LLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKE------DLPAANALNSI  146 (524)
T ss_pred             HHHHHHHHHHhC---------------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh------hHHHHHHHHHH
Confidence            665555443222               246788899999999999999999999999999987      58899999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCC
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNP  267 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (584)
                      ..|+...+||.++|.+....|-.+.|.+.++..++...++...++..+   ++. .+..+..+.+..             
T Consensus       147 ~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~---~~~-~~~e~~~~~l~~-------------  209 (524)
T PF05977_consen  147 SFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP---PSS-LPRERFFSALRE-------------  209 (524)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---ccc-cchhhhhhhHHH-------------
Confidence            999999999999999998889899999998887766555444332211   111 110000000000             


Q ss_pred             CCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHH-HHHHHHHHHhhhhhhhhccccce
Q 007932          268 SELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLV-LGMALIWLVTLIPSTIWAQINTL  346 (584)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  346 (584)
                                             ..++...                   ....+.+ .+...+   ..........+ .+
T Consensus       210 -----------------------G~ryv~~-------------------~~~l~~~l~~~~~~---~l~~~a~~aLl-Pl  243 (524)
T PF05977_consen  210 -----------------------GLRYVRS-------------------SPPLRSVLLRSFLF---NLFASAVWALL-PL  243 (524)
T ss_pred             -----------------------HHHHHhc-------------------chHHHHHHHHHHHH---HHhhhHHHHhh-hH
Confidence                                   0011000                   0001111 111111   11111111111 11


Q ss_pred             EEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007932          347 FVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVE  426 (584)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~  426 (584)
                      +..+      .++ .-....+.+.....++.++++.+..++    .+|.       +..+.+..+.++.+++++.+++. 
T Consensus       244 ~a~~------~l~-~~a~~yGll~a~~gvGai~Gal~~~~l----~~~~-------~~~~lv~~~~~~~a~~~~~lal~-  304 (524)
T PF05977_consen  244 FARD------VLG-GGASGYGLLLAAFGVGAILGALLLPRL----RRRL-------SSRRLVLLASLLFALALLLLALS-  304 (524)
T ss_pred             HHHH------HhC-CcHHHHHHHHHHHHHHHHHHHHHHHHh----hccc-------CcchhhHHHHHHHHHHHHHHhcc-
Confidence            1111      111 001223345555566666666554433    3332       22344566777777777666654 


Q ss_pred             HhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHH
Q 007932          427 VRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVT  506 (584)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~  506 (584)
                                          .+.+..++.+++.|++....++..++.+.+.+|+++||++.+++++....+..+|..+.+
T Consensus       305 --------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G  364 (524)
T PF05977_consen  305 --------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWG  364 (524)
T ss_pred             --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                244556667788899999999999999999999999999999999999999999999988


Q ss_pred             Hhhh
Q 007932          507 LVDK  510 (584)
Q Consensus       507 ~i~~  510 (584)
                      .+.+
T Consensus       365 ~la~  368 (524)
T PF05977_consen  365 FLAD  368 (524)
T ss_pred             HHHH
Confidence            8764

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK15075 citrate-proton symporter; Provisional

Probab=99.85  E-value=5.7e-20  Score=197.25  Aligned_cols=173  Identities=13%  Similarity=0.088  Sum_probs=128.3

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHH-HHHH-----HHHHHhhhHhHHHhhcccchhHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNV-NNWS-----GVVWITPLLGAYIADTYIGRFWTFT   99 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~~G~laD~~~Grk~~~~   99 (584)
                      +++....+++..+++.+....+.. ..+.+.++++.++.+.+... +...     ++..+++++.|+++||+ ||||+++
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~   90 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGF-YATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLI   90 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHH
Confidence            345556666677777777666544 44577888998877654432 2222     22246788999999999 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccc
Q 007932          100 LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV  179 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (584)
                      ++.+++.++.++++++.+...+.            ......++++|+++|++.|...+....+++|++|++      +|+
T Consensus        91 ~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~------~rg  152 (434)
T PRK15075         91 VTLSIMASGTLLIAFVPGYATIG------------LAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG------RKG  152 (434)
T ss_pred             HHHHHHHHHHHHHHhCCcHHHHH------------HHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc------cch
Confidence            99999999999998873211000            000124789999999999999999999999999988      599


Q ss_pred             eeeeeehhHHhHhHHHHhhhhhhhh--------cccchhHHHHHHHH
Q 007932          180 SFFNWWMFSSFIGALCATLGLVYIQ--------ENLGWGLGYGIPTA  218 (584)
Q Consensus       180 ~~~~~~~~~~~~g~~~g~~~~~~l~--------~~~~~~~~f~~~~~  218 (584)
                      ++.++.....++|..+++.+++.+.        +.+|||++|++..+
T Consensus       153 ~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        153 FYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            9999998888888888877777652        46899999987543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=2e-20  Score=197.34  Aligned_cols=402  Identities=13%  Similarity=0.070  Sum_probs=244.5

Q ss_pred             hhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHH
Q 007932           66 SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSL  145 (584)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (584)
                      -+.+++++.+|..+++.++|+++||+ |||..+++..++..++.+++..+...                 +...+++++|
T Consensus        62 wS~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-----------------~~~e~li~GR  123 (485)
T KOG0569|consen   62 WSLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-----------------PSFEMLILGR  123 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHH
Confidence            45678889999999999999999999 99999999999888888777776432                 5588999999


Q ss_pred             HHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhh-h-hcccchhHHHHHHHHHHHHH
Q 007932          146 YIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVY-I-QENLGWGLGYGIPTAGLLFS  223 (584)
Q Consensus       146 ~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~-l-~~~~~~~~~f~~~~~~~~~~  223 (584)
                      ++.|+..|......+.++.|..|++      .||........+..+|..++..++.. + .....|.+.+.+..+..++.
T Consensus       124 ~i~Gl~~gl~~~~~pmyl~E~sP~~------~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~  197 (485)
T KOG0569|consen  124 LIVGLACGLSTGLVPMYLTEISPKN------LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ  197 (485)
T ss_pred             HHHHHHhHHHHHHHHHHHhhcChhh------hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH
Confidence            9999999999999999999999998      69999999999999999999555432 3 34456998888888877777


Q ss_pred             HHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCcccc-ccccccccccccccCCCcchhhhHHHHhc
Q 007932          224 LVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEF-DTQDYIRSGKRQVVHSPAFRCLDKAAIKH  302 (584)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  302 (584)
                      ++...+.++..+.---+. .+..+..+.+ .-++.+     ++.+...|. .++.+. .+   ..+.+..++.+.     
T Consensus       198 l~~l~~~PESPk~Ll~~k-~~~~~A~~sl-~~y~G~-----~~~~~~~e~~~~e~~~-~~---~~~~~~~sl~~~-----  261 (485)
T KOG0569|consen  198 LALLPFLPESPKYLLIKK-GDEEEARKAL-KFYRGK-----EDVEAEIEEMLREIEE-EE---LEKKKQISLRQL-----  261 (485)
T ss_pred             HHHHhcCCCCcchHHHHc-CCHHHHHHHH-HHHhCC-----CcchhHHHHHHHHHHH-hc---cccccCCcHHHH-----
Confidence            777666654333211100 1111111111 111111     111111110 000000 00   000111111111     


Q ss_pred             CCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceEEEecccccCCCCCCccc-CccccccchhhHHHHHh
Q 007932          303 GNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRI-PAASLGSFVTLSMLLSV  381 (584)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~l~~~~~~  381 (584)
                               ++   ....|+.+...    ..+.+...+...+..+.+.... ....  ++.. ...+.........++..
T Consensus       262 ---------~~---~~~lR~~~~i~----~~v~~~qq~sGi~ai~~Yst~i-~~~a--G~~~~~a~~an~~~g~v~~~~t  322 (485)
T KOG0569|consen  262 ---------LK---NPTLRRPLLIG----IVVSFAQQFSGINAIFFYSTSI-FKTA--GFTPEEAQYANLGIGIVNLLST  322 (485)
T ss_pred             ---------hc---CcchhHHHHHH----HHHHHHHHhcCcceeHHHHHHH-HHHc--CCCHHHHHHHHHHHHHHHHHHH
Confidence                     00   01112211111    1111111222222211111111 1111  1111 12233333445555555


Q ss_pred             hccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehh--hHHHHHHH
Q 007932          382 PMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFW--LLPQYVLL  459 (584)
Q Consensus       382 ~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--li~~~~l~  459 (584)
                      ....++++|++||.           .+.+++.++.++..++.........             . .+|.+  .+...+++
T Consensus       323 ~~~~~lid~~gRRp-----------Lll~~~~~~~~~~~~~~~~~~l~~~-------------~-~~~~~y~~i~~~~~~  377 (485)
T KOG0569|consen  323 LVSPFLIDRLGRRP-----------LLLISLSLMAVALLLMSIALFLSNS-------------F-GSWLSYLCIAAIFLF  377 (485)
T ss_pred             HHHHHHHHhcCCcH-----------HHHHHHHHHHHHHHHHHHHHHHHHH-------------h-hhHHHHHHHHHHHHH
Confidence            66666777778773           3666777776666655544321100             0 01222  23344444


Q ss_pred             HHHHH-HHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHH
Q 007932          460 GVADV-FNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLM  538 (584)
Q Consensus       460 g~~~~-~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~  538 (584)
                      .+++. +..|..+-+..|.+|++.|+.++++..+++++.+++-....+.+.+..+                 .++|..+.
T Consensus       378 ~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g-----------------~~~filF~  440 (485)
T KOG0569|consen  378 IISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG-----------------PYVFILFV  440 (485)
T ss_pred             HHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------chhhHHHH
Confidence            44444 4588889999999999999999999999999999999999999875432                 15688888


Q ss_pred             HHHHHHHHHHHhhhhccccccccccccccc
Q 007932          539 VISILNLGAFFWASSRYVYKRETKEVNEGC  568 (584)
Q Consensus       539 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  568 (584)
                      +.+++..+..+...|++|+|...+..++.+
T Consensus       441 i~~~~~~i~~~~~lPETkgr~~~eI~~~~~  470 (485)
T KOG0569|consen  441 IPLAIFLIYLYRYLPETKGRTPYEIIEELE  470 (485)
T ss_pred             HHHHHHHHHHHHhCcccCCCCHHHHHHHHH
Confidence            888888888899999999887666655544

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.85  E-value=3.9e-20  Score=198.77  Aligned_cols=155  Identities=12%  Similarity=0.074  Sum_probs=127.3

Q ss_pred             HHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 007932           51 LVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGIC  130 (584)
Q Consensus        51 ~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (584)
                      ..+++++ .|+++.+.+++.+.+.++..+++++.|+++||+ |||+++.++.++.+++.+++....+.            
T Consensus        49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------  114 (438)
T TIGR00712        49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------  114 (438)
T ss_pred             hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc------------
Confidence            3456665 599999999999999999999999999999999 99999999998888887776654210            


Q ss_pred             CCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhh-hcccch
Q 007932          131 SKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYI-QENLGW  209 (584)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l-~~~~~~  209 (584)
                          ..+...+.+.|++.|++.|...+.....+.|.+|++      +|++++++++...++|+.+++.+.+.. ....+|
T Consensus       115 ----~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w  184 (438)
T TIGR00712       115 ----TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQS------ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDW  184 (438)
T ss_pred             ----cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcc------cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhh
Confidence                134566788899999999999898899999999988      599999999999999999998877754 445789


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 007932          210 GLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       210 ~~~f~~~~~~~~~~~~~~~~  229 (584)
                      |+.|++.++..++..+..+.
T Consensus       185 ~~~f~~~~~~~~i~~~~~~~  204 (438)
T TIGR00712       185 HAALYFPAICAIIVALFAFA  204 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999888776555444443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11043 putative transporter; Provisional

Probab=99.84  E-value=2e-19  Score=190.86  Aligned_cols=148  Identities=14%  Similarity=0.145  Sum_probs=128.4

Q ss_pred             hhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCC
Q 007932           55 LTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTS  134 (584)
Q Consensus        55 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (584)
                      +++++|.++.+.+++.+.+.++..++.++.|+++||+ |||++++++.++..++.+++.++                   
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~-------------------   91 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWV-------------------   91 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHh-------------------
Confidence            5678999999999999999999999999999999999 99999999999888888887775                   


Q ss_pred             cchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHH
Q 007932          135 TSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYG  214 (584)
Q Consensus       135 ~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~  214 (584)
                       .+.+.+++.|+++|++.+...+...+++.|.+|++      ++++.++......++|..++|.+++++.+.++|++.|+
T Consensus        92 -~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~  164 (401)
T PRK11043         92 -ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ------KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFA  164 (401)
T ss_pred             -cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence             45777899999999998887788888999999877      57778888888889999999999999999899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 007932          215 IPTAGLLFSLVIFYI  229 (584)
Q Consensus       215 ~~~~~~~~~~~~~~~  229 (584)
                      +.++..++..+..+.
T Consensus       165 ~~~~~~~~~~~~~~~  179 (401)
T PRK11043        165 TLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            887765555544433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.84  E-value=3.9e-19  Score=188.00  Aligned_cols=170  Identities=14%  Similarity=0.101  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI  110 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~  110 (584)
                      .......+....+.....+.+|. +.+++|.+..+.++..+.+.++..+++++.|+++||+ ||||.++++.++..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~lp~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~~   83 (392)
T PRK10473          6 LCSFALVLLYPAGIDMYLVGLPR-IAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIASL   83 (392)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHHH
Confidence            34444555555555555555554 4678999999999999999999999999999999999 999999999999999888


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      ++..+                    ++.+.+++.|+++|++.+...+...+++.|.+|++      +|+++.++.+...+
T Consensus        84 ~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~  137 (392)
T PRK10473         84 LCSLA--------------------ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITC  137 (392)
T ss_pred             HHHHh--------------------CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHH
Confidence            87765                    44667889999999999998899999999999987      59999999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +|..++|.+++.+.+..+|++.|++.++..++..+..+
T Consensus       138 i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        138 IIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888999999888776555544433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.84  E-value=2e-19  Score=188.96  Aligned_cols=159  Identities=13%  Similarity=0.127  Sum_probs=137.9

Q ss_pred             HHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007932           43 AFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMK  122 (584)
Q Consensus        43 ~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (584)
                      +...+.+.+|.+. +++|+++.+.+++.+.+.++..++.++.|+++||+ |||+++.++.++.+++.+++...       
T Consensus         6 ~~~~~~p~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~-------   76 (377)
T PRK11102          6 AIDMYLPALPVIA-ADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALA-------   76 (377)
T ss_pred             HHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHH-------
Confidence            3445567777665 57899999999999999999999999999999999 99999999999999998888876       


Q ss_pred             CCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhh
Q 007932          123 PTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVY  202 (584)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  202 (584)
                                   ++.+.+.+.|++.|++.+...+...+++.|.+|++      +|++++++.+...++|..++|.++++
T Consensus        77 -------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~  137 (377)
T PRK11102         77 -------------QTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGW  137 (377)
T ss_pred             -------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         45677899999999999999999999999999877      59999999999999999999999999


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          203 IQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       203 l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +.+..+|++.|++.++..++..+....
T Consensus       138 l~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (377)
T PRK11102        138 LLVWFSWHAIFWVLALAAILAAALVFF  164 (377)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence            999899999998877765555444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.84  E-value=1.3e-18  Score=183.57  Aligned_cols=342  Identities=11%  Similarity=0.000  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHH----HHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTF----TLSSLIYV  106 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~----~~~~~~~~  106 (584)
                      +.+....+....++-...+++|.|++ ++|+|..+.+++.+.+.+...+++++.|.++||+ ||++..    .++..+..
T Consensus         7 ~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         7 RWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIFA   84 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHH
Confidence            44555566666666667788888985 6899999999999999999999999999999999 985433    22222211


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      +  .++..+                    ++.+.+++.|++++.+.+...|...++..+.  ++      +|++.++...
T Consensus        85 ~--~~~~~~--------------------~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~------~~~~~~g~~~  134 (382)
T TIGR00902        85 A--AFSAGA--------------------HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QK------QFGLDYGKVR  134 (382)
T ss_pred             H--HHHHhh--------------------hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HH------HcCCCccHHH
Confidence            1  122222                    4577888999999999888888888876543  23      5899999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCC
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDN  266 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (584)
                      ...++|..++|.+++++.+.+|||..|++.++...+.. +.+...++.   +|++ ++                   +++
T Consensus       135 ~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~---~~~~-~~-------------------~~~  190 (382)
T TIGR00902       135 LIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTI---PPKD-AI-------------------PED  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCC---CCCc-cc-------------------ccc
Confidence            99999999999999999999999999887655433222 222222210   1111 00                   000


Q ss_pred             CCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHH-HHHHhhhhhhhhccccc
Q 007932          267 PSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMAL-IWLVTLIPSTIWAQINT  345 (584)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  345 (584)
                               +  .         .+..++.+                    ..++|+++.... .++........+...+.
T Consensus       191 ---------~--~---------~~~~~~~~--------------------~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~  230 (382)
T TIGR00902       191 ---------E--S---------QGDSAFIA--------------------LLKNPMNLRFLAAVCLIQGAHAAYYGFSAI  230 (382)
T ss_pred             ---------c--c---------ccchhHHH--------------------HHcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0  0         00000000                    001122322221 12222222222222221


Q ss_pred             eEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007932          346 LFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAV  425 (584)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~  425 (584)
                       +..     +....   ....+.+..+..+..++...+.+++    .+|.       +..+.+.++.++.++..+.....
T Consensus       231 -~l~-----~~g~s---~~~~g~l~~~~~~~~i~~~~~~~~l----~~r~-------g~~~~l~~~~~~~~~~~~~~~~~  290 (382)
T TIGR00902       231 -YWQ-----AAGIS---ASATGLLWGIGVLAEIIIFAFSNKL----FQNC-------SARDLLLISAIACVGRWAIIGAI  290 (382)
T ss_pred             -HHH-----HCCCC---HhHHHHHHHHHHHHHHHHHHHhHHH----HhhC-------CHHHHHHHHHHHHHHHHHHHHhH
Confidence             111     11111   1112233334455555555554444    4443       34455778888888887766554


Q ss_pred             HHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHH-HHHhHHHHHHHHH
Q 007932          426 EVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFT-SGIGVGNFLNSFL  504 (584)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~l  504 (584)
                                           .+++.++....+.++.++...+....++.+. |++.|++++++++ ....+|..+++.+
T Consensus       291 ---------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~  348 (382)
T TIGR00902       291 ---------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAF  348 (382)
T ss_pred             ---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 2445566677999999999999999999887 9999999999986 5677899999999


Q ss_pred             HHHhhh
Q 007932          505 VTLVDK  510 (584)
Q Consensus       505 ~~~i~~  510 (584)
                      .+.+.+
T Consensus       349 ~G~l~~  354 (382)
T TIGR00902       349 AGFIYP  354 (382)
T ss_pred             HHHHHH
Confidence            887763

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.83  E-value=5e-19  Score=189.82  Aligned_cols=356  Identities=15%  Similarity=0.147  Sum_probs=218.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc---cchhH-HHHHHHHHHHHHHHHH
Q 007932           37 EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY---IGRFW-TFTLSSLIYVLGMILL  112 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~-~~~~~~~~~~~~~~~~  112 (584)
                      .+..++....+.++++.|+++++|+++.++|++.+...+...+..|+.|+++||.   .|||| .++++.+..+++.+++
T Consensus         8 ~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792         8 DFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            4455666677778899999999999999999999999999999999999999983   28755 5667777777777777


Q ss_pred             HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHh
Q 007932          113 TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIG  192 (584)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  192 (584)
                      ....+..              .......+.+.+++.+++.+.......++..|..++++     +|++..++.+...++|
T Consensus        88 ~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~R~~~~~~~~~~~~~g  148 (437)
T TIGR00792        88 FTTPDFS--------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPR-----ERESLSTFRRFGATLG  148 (437)
T ss_pred             HhCCCCC--------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHH-----HHHHHHHHHHHHHHHH
Confidence            6542110              01234566777788888888888888888899886543     6899999998888898


Q ss_pred             HHHHhhhhhhhh-------cccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCC
Q 007932          193 ALCATLGLVYIQ-------ENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPD  265 (584)
Q Consensus       193 ~~~g~~~~~~l~-------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (584)
                      ..+++.+.+.+.       +..+|++.+.+.++..++..++.+...++.+++.+++ .                    +.
T Consensus       149 ~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~-~--------------------~~  207 (437)
T TIGR00792       149 GLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN-I--------------------EK  207 (437)
T ss_pred             HHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc-c--------------------cc
Confidence            887766655554       2458999888777765555444333222111000000 0                    00


Q ss_pred             CCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccc
Q 007932          266 NPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINT  345 (584)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (584)
                                               ..++.+..+.                ..+.|.++......+..............
T Consensus       208 -------------------------~~~~~~~~~~----------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (437)
T TIGR00792       208 -------------------------KLSLKQIFKA----------------LFKNDQLLILCLAYLFYNLAFNIKNGVQV  246 (437)
T ss_pred             -------------------------CCCHHHHHHH----------------HhCCHHHHHHHHHHHHHHHHHHHHcchhh
Confidence                                     0000000000                00112222222221111111111122222


Q ss_pred             eEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007932          346 LFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAV  425 (584)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~  425 (584)
                      ++.....+   .     ....+.+..+..++.+++.++..++.+|+++|           +.+.++.++.+++.+.....
T Consensus       247 ~~~~~~~~---~-----~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~-----------~~~~~~~~~~~~~~~~~~~~  307 (437)
T TIGR00792       247 YYFTYVLG---D-----PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK-----------ILFAGGILLMVLGYLIFFFA  307 (437)
T ss_pred             eeEeeecC---C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHc
Confidence            22221111   0     11112333444566666677666665554443           33566666666665544332


Q ss_pred             HHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCC-------chhHHHHHHHHHHHHhHHH
Q 007932          426 EVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP-------EDMQSLGTTFFTSGIGVGN  498 (584)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~lg~  498 (584)
                      .                    .+.+..+...++.+++.+..++..++++.|.+|       ++.+|.+.|+.++...+|.
T Consensus       308 ~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~  367 (437)
T TIGR00792       308 G--------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ  367 (437)
T ss_pred             c--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence            1                    122334455667788888888888888877765       5678999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q 007932          499 FLNSFLVTLVDKVT  512 (584)
Q Consensus       499 ~lg~~l~~~i~~~~  512 (584)
                      .+++.+.+.+.+..
T Consensus       368 ~lg~~i~g~ll~~~  381 (437)
T TIGR00792       368 ALAGFLVGLILGII  381 (437)
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999999887654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10133 L-fucose transporter; Provisional

Probab=99.83  E-value=9.1e-19  Score=187.81  Aligned_cols=158  Identities=15%  Similarity=0.038  Sum_probs=126.7

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHH
Q 007932           22 SKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLS  101 (584)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  101 (584)
                      ..++....++.+....+...+.........| .+++++|.|+.+.++..+.+.++..+++++.|++.||+ ||||++.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g   97 (438)
T PRK10133         20 QSRSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITG   97 (438)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence            3344555666666666666666555555555 45899999999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      .++++++.+++.....                 .++.+.++++|+++|+|.|...+..++++.|..|++      +|...
T Consensus        98 ~~~~~~~~~l~~~~~~-----------------a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~------~~~~~  154 (438)
T PRK10133         98 LFLYALGAALFWPAAE-----------------IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHFR  154 (438)
T ss_pred             HHHHHHHHHHHHHHHh-----------------cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh------hHHHH
Confidence            9999999987642210                 156788999999999999999999999999875554      45556


Q ss_pred             eeeehhHHhHhHHHHhhhhhhhh
Q 007932          182 FNWWMFSSFIGALCATLGLVYIQ  204 (584)
Q Consensus       182 ~~~~~~~~~~g~~~g~~~~~~l~  204 (584)
                      ++..+....+|..+|+.+++.+.
T Consensus       155 ~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        155 LNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            78888888999999998876543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.83  E-value=8.4e-19  Score=185.80  Aligned_cols=180  Identities=5%  Similarity=-0.134  Sum_probs=135.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.+|.+....++...+...+.++++.|+++++|.++.+.+++.+.+.++..+++++.|+++||+ ||||.++.+.+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~   80 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV   80 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            4567788888888998889999999999999999999999999999999999999999999999 999999887766655


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +...+......+..            .......+.+.+++.|++.+...+....+..|..+        +++..++....
T Consensus        81 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~  140 (396)
T TIGR00882        81 LFAPFFIYVFGPLL------------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--------NSNFEYGKARM  140 (396)
T ss_pred             HHHHHHHHHhhhHH------------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--------hcccccchhhh
Confidence            44332211000000            00123345667788888888888887777666422        24556778888


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ..++|..+||.+++.+.+ .+|+.+|++.+...++..++.+.
T Consensus       141 ~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       141 FGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             hcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence            889999999999998865 69999999887765555544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.83  E-value=8.4e-20  Score=190.86  Aligned_cols=164  Identities=15%  Similarity=0.113  Sum_probs=136.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHH
Q 007932           29 ACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLG  108 (584)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~  108 (584)
                      ..+....+.+......+...+.+|.|+++++|+|..+.+++.+.+.++..+++++.|+++||+ |||++++++.++..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~   80 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP   80 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence            456666777777777777778777788999999999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhH
Q 007932          109 MILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFS  188 (584)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (584)
                      .+++.++.                   .+.+.+++.|+++|++.+. .+...++++|.+|++      +|+++.++....
T Consensus        81 ~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~r~~~~~~~~~~  134 (366)
T TIGR00886        81 CLWAGLAV-------------------QSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKK------IQGTALGLAAGW  134 (366)
T ss_pred             HHHHHHHh-------------------hhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHh------hhhHHHHHHHHH
Confidence            98888762                   1577899999999998665 456788999999987      599999999988


Q ss_pred             HhHhHHHHhhhhhhhhc----------ccchhHHHHH-HHHH
Q 007932          189 SFIGALCATLGLVYIQE----------NLGWGLGYGI-PTAG  219 (584)
Q Consensus       189 ~~~g~~~g~~~~~~l~~----------~~~~~~~f~~-~~~~  219 (584)
                      .++|..+++.+++.+..          ..+||+.|++ .++.
T Consensus       135 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~  176 (366)
T TIGR00886       135 GNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGI  176 (366)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Confidence            88888888887776654          3489999843 3443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.83  E-value=1.2e-18  Score=176.85  Aligned_cols=392  Identities=14%  Similarity=0.042  Sum_probs=266.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      +..+|+++....+ +...+..+.+.+.+.+++++++|+|+.|.+++..+..+...+..++.|.+.||+ |.|++.+++.+
T Consensus        10 ~~~~~~L~~S~~a-f~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~   87 (417)
T COG2223          10 RIARRNLWLSTLA-FDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSML   87 (417)
T ss_pred             cchhHHHHHHHHH-HHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHH
Confidence            4455666655544 444444455667777888899999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      +..+-.+..+++.+                 .++.+.+++.+.+.|++. +..+...+.+++.||++      ++|.+.+
T Consensus        88 l~~IP~~~~~~a~~-----------------~~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~------~qG~AlG  143 (417)
T COG2223          88 LLLIPCLGLAFAVT-----------------YPSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKE------KQGLALG  143 (417)
T ss_pred             HHHHHHHHHHHHcc-----------------CCchHHHHHHHHHHhccc-ceehcccccccccCChh------hhhHHHH
Confidence            99999888888853                 233478999999999884 45678888999999998      6999999


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccc---hhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhcc
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLG---WGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRK  260 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (584)
                      ++. ..|+|..+...+++++....+   |+....+..+..+++.+..++..++.+.+++.. .+..              
T Consensus       144 I~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-~~~~--------------  207 (417)
T COG2223         144 IAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-KPQL--------------  207 (417)
T ss_pred             Hhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-cccc--------------
Confidence            999 999999999999999999888   998888887777776666666544332221111 0000              


Q ss_pred             ccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhh
Q 007932          261 IQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIW  340 (584)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (584)
                         +       +                    + +                   +.+..+++.+.+..+...+...++.+
T Consensus       208 ---~-------~--------------------~-~-------------------~~v~~~~~~W~lsllY~~tFG~Fvgf  237 (417)
T COG2223         208 ---P-------A--------------------Q-L-------------------KAVFSNKDTWLLSLLYFATFGGFVGF  237 (417)
T ss_pred             ---h-------h--------------------H-H-------------------HHHhcCcchHHHHHHHHHHHHHHHHH
Confidence               0       0                    0 0                   00111233444433333333333333


Q ss_pred             ccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 007932          341 AQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA  420 (584)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~  420 (584)
                      ....+.+.......+       ....+.+.....+...+.-|..+++.||++.++           ...+.+..++++..
T Consensus       238 s~~l~~~~~~~fg~~-------~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-----------v~~~~f~~~~~~~~  299 (417)
T COG2223         238 SAYLPMYLVTQFGLS-------PVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-----------VTLAVFVGMALAAA  299 (417)
T ss_pred             HHHHHHHHHHhcCCC-------hhhHHHHHHHHHHHHHHHHhccchhhhhccchh-----------HHHHHHHHHHHHHH
Confidence            322222221111111       223346666777888888999999988887663           25566666666666


Q ss_pred             HHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHH
Q 007932          421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFL  500 (584)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~l  500 (584)
                      +.......              +..+.+....+..++..++..++-+-..+-++....|+ +-|.+.|+....+++|++.
T Consensus       300 ~l~~~~~~--------------~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~  364 (417)
T COG2223         300 LLSLFLTG--------------FGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFF  364 (417)
T ss_pred             HHHccccc--------------cccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccc
Confidence            55543100              01113344445555666666777777777777777764 6788888888888898888


Q ss_pred             HHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007932          501 NSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRY  555 (584)
Q Consensus       501 g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~  555 (584)
                      -|...+...+.+               +.+...|+++..+.+++.+..+..+.|.
T Consensus       365 lp~~~g~~~~~t---------------g~~~~~f~~~~~~~~~a~v~~~~~y~r~  404 (417)
T COG2223         365 LPLAFGVSLDLT---------------GSYTGAFMLLLAFYLVALVLTWALYARR  404 (417)
T ss_pred             hhHHHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888877765433               2345678888888888877777666554

>TIGR00889 2A0110 nucleoside transporter

Probab=99.83  E-value=5e-18  Score=181.06  Aligned_cols=388  Identities=13%  Similarity=0.048  Sum_probs=220.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccch-hHHHHHHHHHHHHHHH
Q 007932           32 FLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGR-FWTFTLSSLIYVLGMI  110 (584)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr-k~~~~~~~~~~~~~~~  110 (584)
                      -+.+..++....+-.+.++++.|+++++|++..+.|++.+.+.++..+++++.|+++||+ || |+++.++.++..++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~-g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKW-LSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHH
Confidence            345556666666666779999999999999999999999999999999999999999998 76 7788887777777776


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccC-------CCCChhhhcccceeee
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQF-------DDFNPYERNLKVSFFN  183 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~-------~~~~~~~~~~r~~~~~  183 (584)
                      +..+.                    ++.+.+.+.|++.+++.+...+...+...+..       .+..     .|.+.++
T Consensus        85 ~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~-----~~~r~~G  139 (418)
T TIGR00889        85 FAAQV--------------------TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDF-----PPIRVMG  139 (418)
T ss_pred             HHHHh--------------------cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcC-----CCeeeeh
Confidence            66654                    34666788888888887776666555432221       1111     2445444


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccC
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQL  263 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (584)
                            .+|.++||.+++.+.....|. +|++.++..++..++.+.. ++.++  +++ .+..+                
T Consensus       140 ------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~-~e~~~--~~~-~~~~~----------------  192 (418)
T TIGR00889       140 ------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTL-PDIPV--AKS-TAKMS----------------  192 (418)
T ss_pred             ------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcC-CCCCC--Ccc-ccccC----------------
Confidence                  478889999888884433344 4555555544444332222 21110  000 00000                


Q ss_pred             CCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH-HHHhhhhhhhhcc
Q 007932          264 PDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI-WLVTLIPSTIWAQ  342 (584)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  342 (584)
                            ..+            ..    ..+...   .                 .+.++++..... ++...........
T Consensus       193 ------~~~------------~~----~~~~~~---~-----------------~k~~~~~~~~~~~~~~~~~~~~~~~~  230 (418)
T TIGR00889       193 ------IKV------------ML----GLDAFI---L-----------------FKNKRMAIFFFFSMLLGAPLQITNIF  230 (418)
T ss_pred             ------HHH------------Hh----hhhHHH---H-----------------hcCCCeeeHHHHHHHHHhHHHHHHHh
Confidence                  000            00    000000   0                 000111111111 1111111011111


Q ss_pred             ccceEEEecccccCCCCCCcc-cCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHH
Q 007932          343 INTLFVKQGTTLNRSLSPSFR-IPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAI  421 (584)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~  421 (584)
                      .+.+. .+. +.+....-++. ...+.+..+..+..+++..+.+++.+|+++|           +.+.++.++.++++.+
T Consensus       231 ~~~~~-~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r-----------~~l~~~~~~~~v~~~l  297 (418)
T TIGR00889       231 GNGFL-HEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIK-----------KVMLLSLVAWALRFGF  297 (418)
T ss_pred             HHHHH-HHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHHHHHHH
Confidence            11111 000 00000000000 1123333444445555555555555554444           3466777777666655


Q ss_pred             HHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHH-HHHhHHHHH
Q 007932          422 AYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFT-SGIGVGNFL  500 (584)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~l  500 (584)
                      .....                 .....++.++...++.+++++...+....++.+.+|++.|++++|+.+ ....+|..+
T Consensus       298 ~~~~~-----------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       298 FAYGD-----------------PEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHcC-----------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            54421                 000112334456678888888888888889999999999999999997 667899999


Q ss_pred             HHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932          501 NSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSR  554 (584)
Q Consensus       501 g~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~  554 (584)
                      |+.+.+.+.+..+..+.          .+++..|.+.+++.+++.+.++++.++
T Consensus       361 Gp~l~G~l~~~~g~~~~----------~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       361 GYILSGVMVEKMFAYGT----------FDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             HHHHHHHHHHHhccccC----------CchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999887653321110          135567888888777777666666543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.83  E-value=1.5e-18  Score=190.02  Aligned_cols=405  Identities=14%  Similarity=0.102  Sum_probs=236.6

Q ss_pred             hhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHH
Q 007932           65 SSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSS  144 (584)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (584)
                      +.+++.+.+.++..+++++.|+++|++ |||++++++.+++.+|.++++.+                    ++..+++++
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a--------------------~~~~~l~~G  148 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALA--------------------PSWYQLIVG  148 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHH
Confidence            448999999999999999999999999 99999999999999999999998                    568899999


Q ss_pred             HHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc--cchhHHHHHHHHHHHH
Q 007932          145 LYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN--LGWGLGYGIPTAGLLF  222 (584)
Q Consensus       145 ~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--~~~~~~f~~~~~~~~~  222 (584)
                      |++.|+|.|......+.+++|..|++      .|+...+..+...++|..++. +.+....+  ++||.++.+..+..++
T Consensus       149 R~l~G~g~G~~~~~~piy~sEiap~~------~RG~l~~~~~l~~~~Gi~~~~-~~~~~~~~~~~~Wr~~~~~~~i~~~~  221 (513)
T KOG0254|consen  149 RILTGLGVGGASVLAPVYISEIAPAH------IRGTLVSLYQLFITIGILLGY-CINYGTSKVYAGWRIPLGLALIPAVI  221 (513)
T ss_pred             HHHhccchhhhhhcchhhHhhcCChh------hhHHHHHHHHHHHHHHHHHHH-HHhhhhccCCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999988      599999999999999999994 44444443  4899888877776555


Q ss_pred             HHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhc
Q 007932          223 SLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKH  302 (584)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  302 (584)
                      ..+..++.++..+.....+  +.....+.+. -++..  . +.+.+...+....+.   ......+....          
T Consensus       222 ~~~~~~~~pesp~~L~~~g--~~~~a~~~l~-~l~g~--~-~~~~~~~~~~~~~~~---~~~~~~~~~~~----------  282 (513)
T KOG0254|consen  222 LALGMLFLPESPRWLIEKG--RLEEAKRSLK-RLRGL--S-PEDVEVELELLKIKL---LVEAEVAEGKA----------  282 (513)
T ss_pred             HHHHHHhCCCChHHHHHcC--ChHHHHHHHH-HHhCC--C-CcchHHHHHHHHHHH---HHhhhcccccc----------
Confidence            5555444332111111111  1111111111 11110  0 010000000000000   00000000000          


Q ss_pred             CCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhh
Q 007932          303 GNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVP  382 (584)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~  382 (584)
                           .++.+..  ...+|+......+..+..     +...+....+....+...   +...+......+......++..
T Consensus       283 -----~~~~l~~--~~~~~~~~i~~~l~~fqq-----~tG~~~~~~Y~~~if~~~---g~~~~~~~~~~~~~~v~~~~t~  347 (513)
T KOG0254|consen  283 -----SWGELFS--PKVRKRLIIGLLLQLFQQ-----LTGINYVFYYSTTIFKSA---GLKSDTFLASIILGVVNFLGTL  347 (513)
T ss_pred             -----cHHHhcC--cchHHHHHHHHHHHHHHH-----HhCCceEEeehHHHHHhc---CCCCchHHHHHHHHHHHHHHHH
Confidence                 0000000  111222222222222221     122222222222222221   1222212333333444444444


Q ss_pred             ccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHH
Q 007932          383 MYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVA  462 (584)
Q Consensus       383 ~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~  462 (584)
                      +...++|+++||.           .+..|...+.+++++++............        .....+..+....++....
T Consensus       348 ~~~~lvd~~gRr~-----------lll~s~~~m~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~f  408 (513)
T KOG0254|consen  348 VATYLVDRFGRRK-----------LLLFGAAGMSICLVILAVVGVFALYYPNS--------SKGAGWLAIVFLCLFIFSF  408 (513)
T ss_pred             HHHHHHHHhccHH-----------HHHHhHHHHHHHHHHHHHHHHHhccCCCc--------ccchhHHHHHHHHHHHHHH
Confidence            4456667766663           47888888888888877764322110000        0112223333333444445


Q ss_pred             HHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHH
Q 007932          463 DVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISI  542 (584)
Q Consensus       463 ~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~  542 (584)
                      .....+..+.+..|.+|.+.|+.+.++....+++.+++-....+......                +....|..+++++.
T Consensus       409 ~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~----------------~~~~~f~~f~~~~~  472 (513)
T KOG0254|consen  409 AIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEAL----------------GIGGTFGYFGGICL  472 (513)
T ss_pred             hcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------------cccchHHHHHHHHH
Confidence            55567777788899999999999999999999998888877766654211                01234666666666


Q ss_pred             HHHH-HHHhhhhccccccccccccc
Q 007932          543 LNLG-AFFWASSRYVYKRETKEVNE  566 (584)
Q Consensus       543 ~~~l-~~~~~~~~~~~~~~~~~~~~  566 (584)
                      +..+ +.+++.+++|+++.++..+.
T Consensus       473 ~~~~~fv~~~~pETkg~sleei~~~  497 (513)
T KOG0254|consen  473 LSLIIFVFFFVPETKGLTLEEINEL  497 (513)
T ss_pred             HHHHHHheEEcccCCCCcHHHHHHH
Confidence            6666 67777888888876555443

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.82  E-value=1.6e-18  Score=208.12  Aligned_cols=155  Identities=9%  Similarity=0.023  Sum_probs=123.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCch--hhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDT--VSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +....++++.++..++..+....+..++...++.+.  ...+++.+++.++..++++++|+++||+ |||++++++.++.
T Consensus         9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~   87 (1146)
T PRK08633          9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE   87 (1146)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence            445555566666666555555555556655555543  4468888999999999999999999999 9999999998776


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      +++.++..+...                 ..+.+.++++|+++|++.+...+...+++.|++|++      +|++++++.
T Consensus        88 ~~~~~~~~~~~~-----------------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~  144 (1146)
T PRK08633         88 VGLTLLIVLAYY-----------------LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKE------NLSRANGLL  144 (1146)
T ss_pred             HHHHHHHHHHHH-----------------HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcc------cchhhhhHH
Confidence            666655544321                 134788999999999999999999999999999988      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcc
Q 007932          186 MFSSFIGALCATLGLVYIQEN  206 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~  206 (584)
                      ..+.++|.++|+.+++++.+.
T Consensus       145 ~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        145 EAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998775

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.82  E-value=9.2e-19  Score=209.81  Aligned_cols=369  Identities=9%  Similarity=0.001  Sum_probs=207.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCch-hhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH--HHHHHHH
Q 007932           34 VGYEAFERMAFYGIQSNLVNYLTSQLHEDT-VSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL--IYVLGMI  110 (584)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~--~~~~~~~  110 (584)
                      ++..+..++....+.......+++..+.+. ...++..+.+.+...++++++|+++||+ |||+++.....  +......
T Consensus        21 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~   99 (1140)
T PRK06814         21 FFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALA   99 (1140)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHH
Confidence            333444444444333333323444444433 3467778889999999999999999999 99998644222  2222222


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      +..+..                   .+.+.++++|+++|++.+...|+..+++.|++|++      +|++++++.+++.+
T Consensus       100 ~~~~~~-------------------~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~------~~~~a~~~~~~~~~  154 (1140)
T PRK06814        100 IYGFHL-------------------NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD------ELLGANALVEAGTF  154 (1140)
T ss_pred             HHHHHH-------------------hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc------ccchhhHHHHHHHH
Confidence            222221                   45788999999999999999999999999999988      69999999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCc
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSEL  270 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (584)
                      +|.++||.++|++....+|++.|...++..+++.++.+...+. +...++. .......+                    
T Consensus       155 ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~--------------------  212 (1140)
T PRK06814        155 IAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT-GNAAPDL-KIDRNIIR--------------------  212 (1140)
T ss_pred             HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCC-eeccchHH--------------------
Confidence            9999999999999999999998854444444443333332221 1100000 00000000                    


Q ss_pred             cccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH-HHHhhhhhhhhccccceEEE
Q 007932          271 HEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI-WLVTLIPSTIWAQINTLFVK  349 (584)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  349 (584)
                                            +..+....                ....+.++..... ++....+.....+++.+. .
T Consensus       213 ----------------------~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~  253 (1140)
T PRK06814        213 ----------------------STITLLKY----------------AKADKRIWLAILGISWFWLVGAVVLSQLPLLA-K  253 (1140)
T ss_pred             ----------------------HHHHHHHH----------------HhcCchHHHHHHHHHHHHHHHHHHHHHhHHHH-H
Confidence                                  00000000                0011122222111 111111222222222221 1


Q ss_pred             ecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 007932          350 QGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRR  429 (584)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~  429 (584)
                      +      .++ .-....+.+.....++.+++..+.+++.++..++           +.+..+.++.+++.+.+.+.....
T Consensus       254 ~------~~g-~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~  315 (1140)
T PRK06814        254 E------TLG-GDENVATLFLAVFSVGVAVGSFLASKLSEGRITL-----------LYVPIGALLMGLFGLDLAFASSSV  315 (1140)
T ss_pred             H------HcC-CchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-----------eeehHHHHHHHHHHHHHHhccccc
Confidence            1      111 0011233455555666677666665553222211           113334444433333222210000


Q ss_pred             -hhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 007932          430 -MHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLV  508 (584)
Q Consensus       430 -~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i  508 (584)
                       ............  ....+.+.+++..++.|++.+..++...+++.+.+|++.||+++|+.++...++..+++.+.+.+
T Consensus       316 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        316 PAEPAQLKSILVF--LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             ccccccccchhhh--hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence             000000000000  00123455666778889999999999999999999999999999999999999999999988777


Q ss_pred             h
Q 007932          509 D  509 (584)
Q Consensus       509 ~  509 (584)
                      .
T Consensus       394 ~  394 (1140)
T PRK06814        394 Q  394 (1140)
T ss_pred             H
Confidence            5

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=99.81  E-value=6.7e-21  Score=200.10  Aligned_cols=366  Identities=32%  Similarity=0.521  Sum_probs=230.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhh
Q 007932           95 FWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYE  174 (584)
Q Consensus        95 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~  174 (584)
                      .|+++++.+++.+|.+++.+++..+..           +++.+.+.++++..+.++|.|+.+|+.+++.+|++++++   
T Consensus         1 yktI~~g~~~~~~G~~ll~l~~~~~~~-----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~---   66 (372)
T PF00854_consen    1 YKTILLGSIVYLLGHVLLTLSAIPPSL-----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDD---   66 (372)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHTSSSC-----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTT---
T ss_pred             CHhhhHHHHHHHHHHHHhHHHHhcchh-----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccc---
Confidence            478999999999999998887643331           123456789999999999999999999999999999873   


Q ss_pred             hcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeec-CCCCCChhhhhHH-HH
Q 007932          175 RNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHK-IRKTKSPARDLIR-VP  252 (584)
Q Consensus       175 ~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~  252 (584)
                      +.+|.+++++++++.|+|+.+++.+.+++.+++||.+.|.++++..+++++.++..++.++++ +|++ ++..+..+ ..
T Consensus        67 ~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~-~~~~~~~~~~~  145 (372)
T PF00854_consen   67 DSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGG-SPLTNFIKLVL  145 (372)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S------S--S--SHHHH
T ss_pred             hhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCC-cccchhHHHHH
Confidence            127999999999999999999999999999999999999999999999999988888888777 4544 55555333 33


Q ss_pred             HHHHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCC-CcccccchhhHHHHHHHHHHH
Q 007932          253 IAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKP-PCTVTQVEGTKLVLGMALIWL  331 (584)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  331 (584)
                      ....+++....+.+.....+.....+    ....  .+.............. ...+. .++.++++..+.+.+....+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~~~~  218 (372)
T PF00854_consen  146 VAAFKKRKLAVPKGSSWLDWALFQYS----ERSI--FGIIVFIRAAVIFFPE-IFFWALFCQVQRVEELKALIRFLPIFL  218 (372)
T ss_dssp             HHHHHHHCCCH-HHHHHHHHHHHHHC----CCCC--CCCCCHHHHHHHHCCC-HHHHTTTSSTTTHHHCCHHHCHHHCCC
T ss_pred             HHHHHHhhcccccchHHHHHhhhhhh----hhhh--hhhhhhccchhhhhhh-hhhcccCCccceeeeeeeeeeccccCe
Confidence            33334443322211111111000000    0000  0000000000011000 00111 123444555666666666666


Q ss_pred             HhhhhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHH
Q 007932          332 VTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVG  411 (584)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig  411 (584)
                      ..+.++....+.+.+...+...+++...+.+.+++++++.++.+..++..|+.+++++++.++    .+..+...++.+|
T Consensus       219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~~k~~~G  294 (372)
T PF00854_consen  219 FWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPPQKFGIG  294 (372)
T ss_dssp             HHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH
T ss_pred             EEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhhhhhhHH
Confidence            777777777777777777777776666634889999999999999999999999999998883    2345788999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHH
Q 007932          412 FVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFT  491 (584)
Q Consensus       412 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~  491 (584)
                      +++..+++++...++.++.......+        ..+.+|.++.+++..+++.+..+...+...+.+|++..+..+|+++
T Consensus       295 ~~~~~~~~~~~~~v~~~r~~~~~~~~--------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~  366 (372)
T PF00854_consen  295 MVFAILAMFVAAIVEIRRLCYAQPCG--------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWF  366 (372)
T ss_dssp             -HHHHHHHHTTTHHHH---HH----T--------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhcccccC--------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHH
Confidence            99999999888877653332222221        2344788899999999999999988886666666666666666655


Q ss_pred             HHH
Q 007932          492 SGI  494 (584)
Q Consensus       492 ~~~  494 (584)
                      ...
T Consensus       367 ~~~  369 (372)
T PF00854_consen  367 ALS  369 (372)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.81  E-value=8.5e-18  Score=182.89  Aligned_cols=181  Identities=12%  Similarity=0.111  Sum_probs=141.1

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc----cchhHH-
Q 007932           23 KTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY----IGRFWT-   97 (584)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grk~~-   97 (584)
                      ++..+|+.+.++...+......+.....++.|+++ .|.|..+.+... ..... +++.++.|.++||+    .||||. 
T Consensus         7 ~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~-~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~   83 (491)
T PRK11010          7 RIFQQPNSAILLILGFASGLPLALTSGTLQAWMTV-ENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGW   83 (491)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHH
Confidence            34556667778888888888888888888888764 599988888763 22222 36889999999995    288885 


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcc
Q 007932           98 FTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNL  177 (584)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (584)
                      ++++.+..+++...+++..  |               ..+.+.+.+.+++.+++.+...+...++..|++|++      +
T Consensus        84 ll~~~i~~~~~~~~~a~~~--~---------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~------~  140 (491)
T PRK11010         84 LLATQLLLLVAIAAMGFLE--P---------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE------E  140 (491)
T ss_pred             HHHHHHHHHHHHHHHHHcC--C---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------h
Confidence            5566667767766666642  1               145777888899999999998999999999999977      5


Q ss_pred             cceeeeeehhHHhHhHHHHhhhhhhhhc-ccchhHHHHHHHHHHHHHHHHHHH
Q 007932          178 KVSFFNWWMFSSFIGALCATLGLVYIQE-NLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       178 r~~~~~~~~~~~~~g~~~g~~~~~~l~~-~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      |+++.++...+.++|..+++.+++++.+ ..|||..|++.++..++..+..+.
T Consensus       141 rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        141 RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999988 579999999988766555444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.80  E-value=9.8e-18  Score=176.82  Aligned_cols=157  Identities=9%  Similarity=-0.090  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchh----HHHHHHHHHHHHHHH
Q 007932           35 GYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRF----WTFTLSSLIYVLGMI  110 (584)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk----~~~~~~~~~~~~~~~  110 (584)
                      ...++...+...+.+++|.|++ ++|.|..+.|++.+.+.+...+++++.|.++||+ ||+    +.+.++..+.  . .
T Consensus        11 ~~~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~-~   85 (382)
T PRK11128         11 LSYFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--A-V   85 (382)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--H-H
Confidence            3355555666777888999985 5799999999999999999999999999999999 984    3333222211  1 1


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      .+...                   .++.+.+++.|++.|++.+...|...++..+. . +      +|+++++..+...+
T Consensus        86 ~~~~~-------------------~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~-~------~~~~a~~~~~~~~~  138 (382)
T PRK11128         86 AFWFG-------------------AHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-Q-K------QIGLDYGKVRLWGS  138 (382)
T ss_pred             HHHHh-------------------cccHHHHHHHHHHHHHHHcccccHHHHHHHHH-H-h------hccCCcchHHHHHH
Confidence            12211                   14578888999999999998888877777765 2 2      47888999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHH
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFS  223 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~  223 (584)
                      +|..+||.+++++.+++|||..|++.++..++.
T Consensus       139 lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128        139 IAFVIGSALTGKLVSWFGEQAILWILTAGVASM  171 (382)
T ss_pred             HHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            999999999999999999999998777654443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.79  E-value=5.1e-18  Score=178.36  Aligned_cols=165  Identities=14%  Similarity=0.129  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhcC--CchhhhhhHHHH-----HHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007932           40 ERMAFYGIQSNLVNYLTSQLH--EDTVSSVRNVNN-----WSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILL  112 (584)
Q Consensus        40 ~~~~~~~~~~~~~~yl~~~l~--~~~~~~~~~~~~-----~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~  112 (584)
                      +.+..+.+. +...++.++..  .++.+.+.+.+.     ..+...+++++.|+++||+ ||||+++++.++..++.+++
T Consensus         5 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         5 EWFDFYLYG-FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             hHHHHHHHH-HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHH
Confidence            344444333 33444444433  444555544433     2233346789999999999 99999999999999998888


Q ss_pred             HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHh
Q 007932          113 TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIG  192 (584)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  192 (584)
                      .++.+....            .......++++|+++|++.+...+..++++.|.+|++      +|++..++.+.+..+|
T Consensus        83 ~~~~~~~~~------------~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~G  144 (394)
T TIGR00883        83 GLLPSYATI------------GIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPG------KRGFYGSFQQVGAPVG  144 (394)
T ss_pred             hhCCChhhh------------HHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcc------cchHHHHHHHHHHHHH
Confidence            876421100            0001235889999999999999999999999999987      5999999999999999


Q ss_pred             HHHHhhhhhhhh--------cccchhHHHHHHHHHHHHHH
Q 007932          193 ALCATLGLVYIQ--------ENLGWGLGYGIPTAGLLFSL  224 (584)
Q Consensus       193 ~~~g~~~~~~l~--------~~~~~~~~f~~~~~~~~~~~  224 (584)
                      ..+++.++..+.        +.++||+.|.+.++..++..
T Consensus       145 ~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  184 (394)
T TIGR00883       145 LLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGL  184 (394)
T ss_pred             HHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHH
Confidence            999988776553        35789999987766554443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.78  E-value=2.1e-17  Score=175.67  Aligned_cols=172  Identities=15%  Similarity=0.114  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      ++.++...+...+. +++...+.+.+++++|.+..+.+++.+.+.++..+++++.|++.||+ |||++++++.++++++.
T Consensus         5 ~~~~~~~f~~~G~~-~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFA-NDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHH-HHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHH
Confidence            34444444444444 34554455567899999999999999999999999999999999999 99999999999999998


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      +++..+..                 ..+.+.+++.|++.|+|.|...+..++++.+..|++      +|++..++.+...
T Consensus        83 ~l~~~~~~-----------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~  139 (410)
T TIGR00885        83 FLFWPAAE-----------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES------TATRRLNLAQSFN  139 (410)
T ss_pred             HHHHHHHh-----------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh------HHHHHHHHHHHHH
Confidence            77654421                 145788999999999999999999999999998877      4788899999999


Q ss_pred             hHhHHHHhhhhhhhhcc--------------------------cchhHHHHHHHHHHHHHHHH
Q 007932          190 FIGALCATLGLVYIQEN--------------------------LGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~--------------------------~~~~~~f~~~~~~~~~~~~~  226 (584)
                      ++|..++|.+++.+...                          .+||++|.+.++..++..++
T Consensus       140 ~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~  202 (410)
T TIGR00885       140 PFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL  202 (410)
T ss_pred             HHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998877422                          36999998877765544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.78  E-value=5.9e-18  Score=172.15  Aligned_cols=439  Identities=12%  Similarity=0.013  Sum_probs=235.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-------CchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH-------EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTL  100 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~  100 (584)
                      |.+.+.-...+.+....+.+....+.+-.-..|       .++...+.+..+..++..+++++.||++||+ |||+++..
T Consensus        41 k~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK~vYG~  119 (538)
T KOG0252|consen   41 KAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRKKVYGK  119 (538)
T ss_pred             HHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cchhhhhH
Confidence            444444444555556655555555543222222       4556778888889999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccce
Q 007932          101 SSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS  180 (584)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (584)
                      .++++.+++++++++-..+        +     -..-++.+.+.|+++|+|.|+-+|...+..+|....+      +|+.
T Consensus       120 ~liImIi~t~~~~~s~~~~--------~-----~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~------~RGa  180 (538)
T KOG0252|consen  120 ELIIMIICSALSGLSVGTT--------S-----PLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK------TRGA  180 (538)
T ss_pred             HHHHHHHHHHHhccCCCCC--------C-----CcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc------cccc
Confidence            9999999998666653111        1     1134567899999999999999999999999988776      6887


Q ss_pred             eeeeehhHHhHhHHHHhhhhhhhh---c------------ccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChh
Q 007932          181 FFNWWMFSSFIGALCATLGLVYIQ---E------------NLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPA  245 (584)
Q Consensus       181 ~~~~~~~~~~~g~~~g~~~~~~l~---~------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (584)
                      ..+..-.+++.|...|.+++-.+.   +            ..-||..|.+.++..++.+..-+.+++..+++....    
T Consensus       181 ~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~----  256 (538)
T KOG0252|consen  181 FIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVS----  256 (538)
T ss_pred             eeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhh----
Confidence            777766666666666544443331   1            012898877666543333322222221111110000    


Q ss_pred             hhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHH
Q 007932          246 RDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLG  325 (584)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (584)
                         .+. ..+..+.+    .+.+.    +.++++......-..++......+                     ...+.  
T Consensus       257 ---~~~-~~a~~d~~----k~~~~----~~~~~~~~~~~~~~~~~~~~~F~~---------------------~f~~~--  301 (538)
T KOG0252|consen  257 ---KKL-KQAAGDMK----KVLSV----DIEAESTAESDVPPPSNSFGLFSR---------------------LFLRW--  301 (538)
T ss_pred             ---cCH-hhhhhccc----ccccc----ccchhhccccCCCCcccccchHHH---------------------HHHHH--
Confidence               000 00000000    00000    000000000000000000000000                     00000  


Q ss_pred             HHHHHHHhhhhhhhhc-cccceEEEecccccC-CCCCCcccC-----ccccccchh-hHHHHHhhccccchhhhhhhccC
Q 007932          326 MALIWLVTLIPSTIWA-QINTLFVKQGTTLNR-SLSPSFRIP-----AASLGSFVT-LSMLLSVPMYDRYFVPFMRRRTG  397 (584)
Q Consensus       326 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~l~~~~~-l~~~~~~~~~~~~~~~~~~r~~~  397 (584)
                      ....++.+...|..+. .+++..+.|...++. ...|+-...     .+..+.+.. ...+.+..+...++|.++|+.  
T Consensus       302 hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~--  379 (538)
T KOG0252|consen  302 HGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKY--  379 (538)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHH--
Confidence            1112222222232221 222333333222210 000000000     011111111 122224445555666666663  


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHH-HHHHHHHhhhceeeeec
Q 007932          398 NPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLL-GVADVFNAIGLLEFFYD  476 (584)
Q Consensus       398 ~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~-g~~~~~~~~~~~~~~~~  476 (584)
                               .-+.|++++++.+++++..-++                . .+..-.++.+.+. -++....+.+...+.++
T Consensus       380 ---------iq~~GF~~~~i~~~~~~~~y~~----------------~-~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE  433 (538)
T KOG0252|consen  380 ---------IQLMGFFIMTIFFFVIAGPYNQ----------------L-ENTIGFVVLYSLTFFFGNFGPNATTFIVPAE  433 (538)
T ss_pred             ---------HHHhhHHHHHHHHHHHcCCccc----------------c-cccCceeehHHHHHHHHhcCCCceeEEeehh
Confidence                     3567888887777766654111                0 1112223333333 34555668888888899


Q ss_pred             cCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhccc
Q 007932          477 QSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYV  556 (584)
Q Consensus       477 ~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~  556 (584)
                      .+|.+.||+..|+....+-+|++++........+..           .....+....++++++++++..++.+++ ++.+
T Consensus       434 ~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~-----------yp~~~g~~~v~~i~~~~~~~gi~~T~l~-pEtk  501 (538)
T KOG0252|consen  434 IFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN-----------YPPNIGVRNVFIILAGCMLLGILFTLLI-PETK  501 (538)
T ss_pred             hchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc-----------CCccccchHHHHHHHHHHHHhHheeEEe-eccc
Confidence            999999999999999999999999999886654210           1113355677999999998887766665 4666


Q ss_pred             ccccccccc
Q 007932          557 YKRETKEVN  565 (584)
Q Consensus       557 ~~~~~~~~~  565 (584)
                      .+..++..+
T Consensus       502 ~~~leei~~  510 (538)
T KOG0252|consen  502 GKSLEEISN  510 (538)
T ss_pred             ccCHHHhcC
Confidence            666554433

>TIGR00896 CynX cyanate transporter

Probab=99.78  E-value=4.5e-18  Score=177.45  Aligned_cols=327  Identities=13%  Similarity=0.096  Sum_probs=205.0

Q ss_pred             HHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007932           47 IQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCT  126 (584)
Q Consensus        47 ~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (584)
                      +.+.+| .+.+++|.|..+.+++.+.+.++..++.++.|+++||+ ||||+++++.++..++.+.+ ..           
T Consensus        19 ~~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~-----------   84 (355)
T TIGR00896        19 VGPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SA-----------   84 (355)
T ss_pred             CcccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hh-----------
Confidence            334444 56779999999999999999999999999999999999 99999999998877777665 33           


Q ss_pred             CCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc
Q 007932          127 NGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN  206 (584)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  206 (584)
                               ++.+.+++.|++.|++.+...+..+..+.|.+| +      +|+++.++++...++|..+++.+++.+.+.
T Consensus        85 ---------~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~  148 (355)
T TIGR00896        85 ---------PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q------RVGLMTGLYSMALMGGAALAAAATVPLAQH  148 (355)
T ss_pred             ---------ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                     446778899999999999888888888888886 3      489999999999999999999999888766


Q ss_pred             c--chhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccc
Q 007932          207 L--GWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKR  284 (584)
Q Consensus       207 ~--~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (584)
                      .  +||+.|.+.++..++.... + ..+ .+++++++ .+                    ..             .    
T Consensus       149 ~~~~w~~~f~~~~~~~~~~~~~-~-~~~-~~~~~~~~-~~--------------------~~-------------~----  187 (355)
T TIGR00896       149 SGGHWQQALAWWALPALLALLA-W-IPQ-VRRRVAAN-QT--------------------TT-------------R----  187 (355)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHH-H-hhh-hccccCCC-CC--------------------CC-------------C----
Confidence            4  3898887665543333221 1 111 11100000 00                    00             0    


Q ss_pred             cccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH-HHHhhhhhhhhccccceEEEecccccCCCCCCcc
Q 007932          285 QVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI-WLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFR  363 (584)
Q Consensus       285 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (584)
                       .   .                 .++      ....+..+..... .+....++....+.+.++. + .+.+       .
T Consensus       188 -~---~-----------------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~-~g~~-------~  231 (355)
T TIGR00896       188 -L---T-----------------PVR------IWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILI-S-HGAS-------A  231 (355)
T ss_pred             -C---C-----------------Cch------hhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCC-------H
Confidence             0   0                 000      0001122211111 1112222222222222221 1 0111       1


Q ss_pred             cCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCC
Q 007932          364 IPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQ  443 (584)
Q Consensus       364 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (584)
                      ...+.+.....++.+++.++.+++.+|+.+|          .+.+.++.++.+++........                 
T Consensus       232 ~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~----------~~~~~~~~~~~~~~~~~~~~~~-----------------  284 (355)
T TIGR00896       232 ATAGSLLALMQLAQAASALLIPALARRVKDQ----------RGIVAVLAVLQLVGLCGLLFAP-----------------  284 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHhhhccc----------hHHHHHHHHHHHHHHHHHHHhh-----------------
Confidence            1223444555666777777766665554222          1234556666666665554431                 


Q ss_pred             ccceeehhhHHHHHHHHHHHHHHhhhceeeeeccC-CchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 007932          444 IVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS-PEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVT  512 (584)
Q Consensus       444 ~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~  512 (584)
                         .+..+  ...++.|++.+...+.....+.+.. +++.++...++.+....+++.+++.+.+.+.+..
T Consensus       285 ---~~~~~--~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       285 ---MHGLW--AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             ---hhHHH--HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               01111  1345678888888887666665554 4577899999999888999999999998876543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.75  E-value=9.1e-17  Score=159.95  Aligned_cols=117  Identities=15%  Similarity=0.099  Sum_probs=104.9

Q ss_pred             CchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHH
Q 007932           61 EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAF  140 (584)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (584)
                      .+..-.|.+-+.|.+...+.++..|.++||| |||++++++.+..++...+.+.+                    .++..
T Consensus        65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S--------------------~~F~a  123 (451)
T KOG2615|consen   65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALS--------------------RNFAA  123 (451)
T ss_pred             ccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHH--------------------HHHHH
Confidence            3445678899999999999999999999999 99999999999999988888877                    45666


Q ss_pred             HHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhc
Q 007932          141 FYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE  205 (584)
Q Consensus       141 ~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  205 (584)
                      +.++|++.|+.-|-. ..+.++++|+++++      .|+.+++.......+|..+||++++++.+
T Consensus       124 fv~aR~l~Gi~kgnl-~v~rAiisdV~sek------~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  124 FVLARFLGGIFKGNL-SVIRAIISDVVSEK------YRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHhhhhccCch-HHHHHHHHhhcChh------hccceeeeeehhhhcchhhcchhhhHHHh
Confidence            778899999998865 66789999999998      49999999999999999999999999988

>TIGR00901 2A0125 AmpG-related permease

Probab=99.74  E-value=1.1e-16  Score=166.98  Aligned_cols=157  Identities=11%  Similarity=0.091  Sum_probs=119.0

Q ss_pred             HHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc----cchhHHH-HHHHHHHHHHHHHHHHhhhccccC
Q 007932           48 QSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY----IGRFWTF-TLSSLIYVLGMILLTMAASLKFMK  122 (584)
Q Consensus        48 ~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grk~~~-~~~~~~~~~~~~~~~~~~~~~~~~  122 (584)
                      .....+.+.+++|+|.++.++.... .+...+ .++.|+++||+    +||||.+ +.+.++.+++...+++..+     
T Consensus         7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----   79 (356)
T TIGR00901         7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-----   79 (356)
T ss_pred             HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence            3333444456889999999988644 344444 88999999996    3899975 5666666666555555421     


Q ss_pred             CCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhh
Q 007932          123 PTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVY  202 (584)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  202 (584)
                                  ..+.+.+....++.+++.+...+...+++.|.+|++      +|+++.++...+.++|..+++.++++
T Consensus        80 ------------~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~  141 (356)
T TIGR00901        80 ------------STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALV  141 (356)
T ss_pred             ------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHH
Confidence                        134555666677778888888899999999999887      59999999999999999999999999


Q ss_pred             hhcccc--------hhHHHHHHHHHHHHHHHHHHH
Q 007932          203 IQENLG--------WGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       203 l~~~~~--------~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +.+..+        ||.+|++.++..++..+..++
T Consensus       142 l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~  176 (356)
T TIGR00901       142 LASPEFANTGLITLWGYIFFWTALLILPGLLVTLF  176 (356)
T ss_pred             HhhhcccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            988888        999999888876665554443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.73  E-value=8.9e-16  Score=163.94  Aligned_cols=443  Identities=12%  Similarity=0.002  Sum_probs=251.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc----ccchhHHHHHH-H
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADT----YIGRFWTFTLS-S  102 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grk~~~~~~-~  102 (584)
                      ++++.+..+.+..++++-...++++.|+ +++|.+....+.+.....+...+.+|+.|+++||    + ||||.++++ .
T Consensus         4 ~~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~   81 (477)
T TIGR01301         4 RKLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGA   81 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHH
Confidence            5567778888888999888888888886 5799999999999999999999999999999995    8 999998875 5


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      +..+++.++++++.++..+.   +............+.+.++..+..++.....+...++++|.+|++++    +++.+.
T Consensus        82 ~~~~~~l~ll~~~~~~~~~~---~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~----~~~~a~  154 (477)
T TIGR01301        82 ALVAFAVILIGFAADIGHLF---GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDAR----RTRIAN  154 (477)
T ss_pred             HHHHHHHHHHHhCchhhhhc---cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhH----HHHHHH
Confidence            56666666666654321100   00000000001113344555556678888888889999999998752    236899


Q ss_pred             eeehhHHhHhHHHHhhhhhhh--hccc-------------chhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhh
Q 007932          183 NWWMFSSFIGALCATLGLVYI--QENL-------------GWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARD  247 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l--~~~~-------------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (584)
                      ++++.+.++|+.+|+.+++..  .+.+             +.+..|++.++..+++.+...+..++.+...+++ .+   
T Consensus       155 ~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~-~~---  230 (477)
T TIGR01301       155 AYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD-FI---  230 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc-ch---
Confidence            999999999999999988865  2211             5678898887776666655444333221111110 00   


Q ss_pred             hHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCc-chhhhHHHHhcCCCCCCCCCcccccchhhHHHHHH
Q 007932          248 LIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPA-FRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGM  326 (584)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (584)
                                          ++.++..  + ..+.      .+. .+.++..                  ..--|.+.+.
T Consensus       231 --------------------~~~~~~~--~-~~~~------~~~~~~i~~~~------------------~~mP~~m~~l  263 (477)
T TIGR01301       231 --------------------NSEAAPP--S-KHGE------EAFFGELFGAF------------------KYLPRPVWIL  263 (477)
T ss_pred             --------------------hhhcccc--c-ccch------hhhHHHHHHHH------------------HHCCHHHHHH
Confidence                                0000000  0 0000      000 0111110                  0011333344


Q ss_pred             HHHHHHhhhhhhhhccccceEEEec-ccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChh
Q 007932          327 ALIWLVTLIPSTIWAQINTLFVKQG-TTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITML  405 (584)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  405 (584)
                      +.+-++..+-|..+..+.+.++-+. .+.+..-...|.. .........+...+...+...+..++.|+..+      ..
T Consensus       264 ~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~-gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~------~k  336 (477)
T TIGR01301       264 LLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDD-GVRAGAFGLMLNSVVLGITSIGMEKLCRGWGA------GK  336 (477)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------ch
Confidence            4444444444443333333322211 0000000000100 10112222222222222333444555555421      11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh--h-ccccccCCCCCcccee-ehhhHHHHHHHHHHHHHHhhhceeeeeccCCc-
Q 007932          406 QRLGVGFVIQVMAIAIAYAVEVRRMH--V-IRVQHISGPKQIVPMS-IFWLLPQYVLLGVADVFNAIGLLEFFYDQSPE-  480 (584)
Q Consensus       406 ~~i~ig~~l~~i~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~-  480 (584)
                      ..-.++.++.++|++...++.....+  . .+.++..    ..+.. .+..+..+.+.|+.....+..-++++.+..|+ 
T Consensus       337 ~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~  412 (477)
T TIGR01301       337 RLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESL----PPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL  412 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc----CcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence            22367878888888777665321000  0 0000000    00011 25566777888998888888888999888885 


Q ss_pred             -hhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007932          481 -DMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRY  555 (584)
Q Consensus       481 -~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~  555 (584)
                       +..|..+|+.|.+..+...+.....+.+.+..+.              +...++.+.++.++++++..++..|+.
T Consensus       413 ~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------------~~~~~~~~~gv~~~~aa~~~~~~~~~~  474 (477)
T TIGR01301       413 GAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------------GNLPAFVVGAVAAFVSGLLALILLPRP  474 (477)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------------CCeeHHHHHHHHHHHHHHHHHHhCCCC
Confidence             4559999999999999999988877775543321              223457777777777777777666654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.73  E-value=1e-20  Score=203.88  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=118.7

Q ss_pred             hhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHH
Q 007932           65 SSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSS  144 (584)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (584)
                      ..++..+...++..++.+++|+++||+ |||++++++.++..++.++..++..                 ..+.+.+.++
T Consensus        47 ~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~-----------------~~~~~~~~~~  108 (451)
T PF00083_consen   47 LSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPS-----------------YNNFWMLLIG  108 (451)
T ss_pred             HHHHHHHHHHhhhcccccccccccccc-ccccccccccccccccccccccccc-----------------cccccccccc
Confidence            467889999999999999999999999 9999999999999999998888731                 1267889999


Q ss_pred             HHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc---cchhHHHHHHHHHHH
Q 007932          145 LYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN---LGWGLGYGIPTAGLL  221 (584)
Q Consensus       145 ~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~f~~~~~~~~  221 (584)
                      |++.|++.|...+....++.|..|++      .|+....+.+....+|..++..++-.+.+.   .+||..+.+..+..+
T Consensus       109 R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l  182 (451)
T PF00083_consen  109 RFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSL  182 (451)
T ss_pred             cccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999988      599999999999999998887666544332   459999888777655


Q ss_pred             HHHHHHHHh
Q 007932          222 FSLVIFYIG  230 (584)
Q Consensus       222 ~~~~~~~~~  230 (584)
                      +..+..+..
T Consensus       183 ~~~~~~~~~  191 (451)
T PF00083_consen  183 LVLLLRFFL  191 (451)
T ss_pred             ccccccccc
Confidence            544444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.73  E-value=2.6e-15  Score=159.45  Aligned_cols=165  Identities=12%  Similarity=0.089  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc----cchhH-HHHHHHHHHHHHHH
Q 007932           36 YEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY----IGRFW-TFTLSSLIYVLGMI  110 (584)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~----~Grk~-~~~~~~~~~~~~~~  110 (584)
                      ..+.....+.-....+|.|+++ .|+|..+.|++......  ++..++.|+++||+    .|||| .++++.++.+++..
T Consensus         7 l~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~   83 (402)
T PRK11902          7 LGFASGLPLALTSGTLQAWMTV-EGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA   83 (402)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence            3444455555556777888875 49999999998766655  69999999999997    26665 67777888777777


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      ++.+...                 ..+.+.+.+..++.+...+...+...+++.|.+|++      +|+++.++...+.+
T Consensus        84 ~l~~~~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~------~r~~~~~~~~~g~~  140 (402)
T PRK11902         84 AMAFCPP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPE------ERGAGAAVKVLGYR  140 (402)
T ss_pred             HHHhcCc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh------hhhHHHHHHHHHHH
Confidence            6666421                 134666777767778888888899999999999887      59999999999999


Q ss_pred             HhHHHHhhhhhhhhcc-cchhHHHHHHHHHHHHHHHH
Q 007932          191 IGALCATLGLVYIQEN-LGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~-~~~~~~f~~~~~~~~~~~~~  226 (584)
                      +|..+++.+++++.+. .|||..|++.++..++..+.
T Consensus       141 ~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        141 LAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             HHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999888875 59999999888765554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.73  E-value=1.8e-16  Score=176.84  Aligned_cols=200  Identities=16%  Similarity=0.168  Sum_probs=155.0

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      ..+|.+.+.+....+.+....++.......++++++++..+.|++.+.+.++..++.++.|+++||+ ||||.+.+++++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll  107 (633)
T TIGR00805        29 SKIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAI  107 (633)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHH
Confidence            4455555555556666667777778777888999999999999999999999999999999999998 999999999999


Q ss_pred             HHHHHHHHHHhhhccc-----------------cCCCCCCC------------CcCCCC--cchHHHHHHHHHHHHHhcc
Q 007932          105 YVLGMILLTMAASLKF-----------------MKPTCTNG------------ICSKTS--TSQIAFFYSSLYIIAIGAG  153 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~-----------------~~~~~~~~------------~~~~~~--~~~~~~~~~~~~~~gi~~g  153 (584)
                      ++++.+++++...+..                 -.+.|.+.            .|...+  .....+++++|+++|+|.+
T Consensus       108 ~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~  187 (633)
T TIGR00805       108 MGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT  187 (633)
T ss_pred             HHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC
Confidence            9999999887641110                 00112111            111111  1235678899999999999


Q ss_pred             cccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhccc----------------------chhH
Q 007932          154 GTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL----------------------GWGL  211 (584)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------------~~~~  211 (584)
                      ...+...+++.|.+|++      +|+...++++.+..+|..+|+++++++.+.+                      +|+.
T Consensus       188 ~~~~~~~~~i~d~~~~~------~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl  261 (633)
T TIGR00805       188 PIFPLGISYIDDFAKSK------NSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWI  261 (633)
T ss_pred             cchhcCchhhhccCCcc------ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHH
Confidence            99999999999999988      5999999999999999999999999987542                      2777


Q ss_pred             HHHHHHHHHHHHHHHHHHhC
Q 007932          212 GYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       212 ~f~~~~~~~~~~~~~~~~~~  231 (584)
                      .|++.+++.++..+.++..+
T Consensus       262 ~Fli~g~l~~l~~v~l~~~p  281 (633)
T TIGR00805       262 GFLICGGVALLTSIPFFFFP  281 (633)
T ss_pred             HHHHHHHHHHHHHHHHHhCc
Confidence            78887776655554444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.72  E-value=1.3e-15  Score=150.69  Aligned_cols=422  Identities=13%  Similarity=0.025  Sum_probs=238.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007932           39 FERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASL  118 (584)
Q Consensus        39 ~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~  118 (584)
                      .+........+.+.+-+....|.+..+..++......++.+++...|.++|++ ||||.+.+..+...+.-.+-+.+   
T Consensus        88 mad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~s---  163 (528)
T KOG0253|consen   88 MADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGAS---  163 (528)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCC---
Confidence            33334455556666677888999999999999999999999999999999999 99999988876555544444443   


Q ss_pred             cccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhh
Q 007932          119 KFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATL  198 (584)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  198 (584)
                                       +++..+++.|.+.|+|.|+ .|...++-.|..|...      |....-.. +...+|.+....
T Consensus       164 -----------------pnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~  218 (528)
T KOG0253|consen  164 -----------------PNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEAL  218 (528)
T ss_pred             -----------------CCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHH
Confidence                             6778899999999999999 8999999999999773      66655555 778889988877


Q ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccc
Q 007932          199 GLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDY  278 (584)
Q Consensus       199 ~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (584)
                      +.=.+..++||||..........+...+.++.++..+....++ ++.+...-...-+-.|++ +.|.........+++++
T Consensus       219 law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G-~~~kAletL~kiArmNg~-qlplgvl~~s~~~~~e~  296 (528)
T KOG0253|consen  219 LAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKG-DDYKALETLHKIARMNGK-QLPLGVLESSAIDRQEQ  296 (528)
T ss_pred             HHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcC-ChHHHHHHHHHHHHhcCC-CCCcceeeeehhhhhhh
Confidence            7766778899999888777666666666666665544443333 332222222222223333 33333222222222111


Q ss_pred             ccccccccc----CCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHH-hhhhhhhh------ccccc--
Q 007932          279 IRSGKRQVV----HSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLV-TLIPSTIW------AQINT--  345 (584)
Q Consensus       279 ~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~--  345 (584)
                      ...+.....    +.......+              .++   ..-+|+.+....+++. .-.++...      .|...  
T Consensus       297 e~~~~~~~~~~a~ke~rg~~~n--------------Lls---p~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c  359 (528)
T KOG0253|consen  297 EESDLDDSKSSAAKEVRGGTTN--------------LLS---PKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDAC  359 (528)
T ss_pred             hhhchhhhhhccccccccchHh--------------hcC---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCcc
Confidence            111100000    000010000              000   1112333322222222 22222111      11110  


Q ss_pred             --eEEEecccccCCCCCCcccCccccc-cchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007932          346 --LFVKQGTTLNRSLSPSFRIPAASLG-SFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA  422 (584)
Q Consensus       346 --~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~  422 (584)
                        +.-..+...+....-.+........ .+..+.-..+..+...++++++||.           .++..+++++++.+..
T Consensus       360 ~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKk-----------TMal~l~~f~iflfll  428 (528)
T KOG0253|consen  360 PLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKK-----------TMALSLILFGIFLFLL  428 (528)
T ss_pred             ccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchh-----------HHHHHHHHHHHHHHHH
Confidence              0000000000000000000000000 0112222333334445566667773           3777778887777766


Q ss_pred             HHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHH
Q 007932          423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNS  502 (584)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~  502 (584)
                      ...+.+                   +  ......+....+....+...+.|..|.+|...|+++.|....++.+|+++.|
T Consensus       429 ~~c~~r-------------------n--~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p  487 (528)
T KOG0253|consen  429 TTCKTR-------------------N--AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSP  487 (528)
T ss_pred             HHhcCc-------------------c--hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhh
Confidence            554211                   1  1111223334445566778899999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhccccc
Q 007932          503 FLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVYK  558 (584)
Q Consensus       503 ~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~  558 (584)
                      .+. +....                 +....-.+.+.+++++++...++-.+.|+|
T Consensus       488 ~iA-~~~e~-----------------s~sl~i~vy~~~~ilagIavcffPiEtkGR  525 (528)
T KOG0253|consen  488 VIA-MRAEL-----------------STSLPIFVYGALFILAGIAVCFFPIETKGR  525 (528)
T ss_pred             HHH-HHhcc-----------------ceeehHHHHHHHHHHHHHHheeeeeccCCC
Confidence            887 43311                 111224556666666666555554455554

>PRK09669 putative symporter YagG; Provisional

Probab=99.71  E-value=8.7e-16  Score=165.32  Aligned_cols=176  Identities=11%  Similarity=0.039  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc----ccchhHH-HHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADT----YIGRFWT-FTLSSLIY  105 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grk~~-~~~~~~~~  105 (584)
                      +.--+..+..++....+..+++.|+++.+|+++..+|.+..+..+...+..|+.|+++||    + ||||. ++++.+..
T Consensus        12 ~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~~~~   90 (444)
T PRK09669         12 IGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFAIPF   90 (444)
T ss_pred             HhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHHHHH
Confidence            333455566777777778889999999999999999999999999999999999999999    6 87555 54666666


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      +++.+++....   ..           ........+++..++.+++.........++.+|+.++.+     +|.+..++.
T Consensus        91 ~i~~~l~f~~p---~~-----------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~-----eR~~l~~~r  151 (444)
T PRK09669         91 GVVCLLTFYTP---DF-----------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPR-----ERHSLQSWR  151 (444)
T ss_pred             HHHHHHHHhCC---CC-----------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHH-----HHHHHHHHH
Confidence            66655544331   10           011334455666666677777777778889999886554     588888998


Q ss_pred             hhHHhHhHHHHhhhhhhhhc-------ccchhHHHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQE-------NLGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~-------~~~~~~~f~~~~~~~~~~~~~  226 (584)
                      ....++|..+++.+...+..       ..+|+..+.+.+++.++..++
T Consensus       152 ~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        152 FALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            88889988888765544332       246776766666554444433

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.71  E-value=1e-15  Score=168.21  Aligned_cols=140  Identities=16%  Similarity=0.133  Sum_probs=125.9

Q ss_pred             hhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcc
Q 007932           57 SQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTS  136 (584)
Q Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (584)
                      +..+.+.....+..+.+.+|..+++++.|.++||+ |||+++++++++.+++.++.+++                    +
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a--------------------~  169 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFA--------------------P  169 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHh--------------------C
Confidence            56677778888999999999999999999999997 99999999999999999888887                    6


Q ss_pred             hHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHH
Q 007932          137 QIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIP  216 (584)
Q Consensus       137 ~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~  216 (584)
                      +.+.+++.|++.|++.++...+...+++|.++++      .|+.+..+ ......++.+++.+++++..  +||+.+++.
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~------~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~  240 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK------QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII  240 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcc------hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence            7889999999999999999999999999999999      59999999 88888888888899998877  899999988


Q ss_pred             HHHHHHHHHH
Q 007932          217 TAGLLFSLVI  226 (584)
Q Consensus       217 ~~~~~~~~~~  226 (584)
                      .+..++.++.
T Consensus       241 ~~~~~~~~~~  250 (521)
T KOG0255|consen  241 SIPSGLFLLL  250 (521)
T ss_pred             HHHHHHHHHH
Confidence            7776655555

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.70  E-value=1.9e-15  Score=164.01  Aligned_cols=366  Identities=12%  Similarity=0.053  Sum_probs=207.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhh----cccchh-HHHHHHHHHHHH
Q 007932           33 LVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIAD----TYIGRF-WTFTLSSLIYVL  107 (584)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grk-~~~~~~~~~~~~  107 (584)
                      --+..+..++....+.++++.|+++.+|+++..+|.+..+..+.-.+..|+.|+++|    |+ ||| +.++++.+..++
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i~~~i   89 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTLANSV   89 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhHHHHH
Confidence            345566777888888899999999999999999999999999999999999999999    67 985 455567667677


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++....   ..           .+......+.+..++.+++.........++..|..++.+     +|.+..++...
T Consensus        90 ~~~llf~~p---~~-----------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~-----eR~~l~~~~~~  150 (473)
T PRK10429         90 VLFLLFSAH---LF-----------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKR-----EREQLVPYPRF  150 (473)
T ss_pred             HHHHHHcCC---CC-----------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHH-----HHHHHHHHHHH
Confidence            665554321   10           011123345555566778888888888899999986554     69999988788


Q ss_pred             HHhHhHHHHhhhhhhhhc-------ccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhcc
Q 007932          188 SSFIGALCATLGLVYIQE-------NLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRK  260 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~-------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (584)
                      ..++|+.+++.+...+..       ..+|+....+.++..++..+..+...++.  ..++.+.+                
T Consensus       151 ~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~--~~~~~~~~----------------  212 (473)
T PRK10429        151 FASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV--YSSDNQVS----------------  212 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec--CCcccccc----------------
Confidence            888887766555443322       12455555544444333333333222211  00000000                


Q ss_pred             ccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhh
Q 007932          261 IQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIW  340 (584)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (584)
                         +++                       +..++.+..+.                ..+.|.++......+.........
T Consensus       213 ---~~~-----------------------~~~~~~~~~~~----------------~~~n~~~~~ll~~~~~~~~~~~~~  250 (473)
T PRK10429        213 ---AEG-----------------------SHLTLKDIVAL----------------IYKNDQLSCLLGMALAYNIASNII  250 (473)
T ss_pred             ---ccc-----------------------cCCCHHHHHHH----------------HhcCHHHHHHHHHHHHHHHHHHHH
Confidence               000                       00001110000                001122222222222221222222


Q ss_pred             ccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 007932          341 AQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA  420 (584)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~  420 (584)
                      .....++...... +.      . ....+..+..++.+++.++..++.+|+++|           +.+.++..+..++.+
T Consensus       251 ~~~~~y~~~y~~~-~~------~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk-----------~~~~~~~~~~~~~~~  311 (473)
T PRK10429        251 NGFAIYYFTYVIG-DA------D-LFPYYLSYAGAANLVTLILFPRLVKSLSRR-----------ILWAGASIFPVLSCG  311 (473)
T ss_pred             hhheeeEEEEECC-CH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcH-----------HHHHHHHHHHHHHHH
Confidence            2222222222111 00      0 111233334455666666666554444443           234455554444443


Q ss_pred             HHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCC-------chhHHHHHHHHHHH
Q 007932          421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP-------EDMQSLGTTFFTSG  493 (584)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~  493 (584)
                      .......                ..+.+.+.+++..++.+++.+...+..++++.|.++       .+..|...|...+.
T Consensus       312 ~~~~~~~----------------~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~  375 (473)
T PRK10429        312 VLLLMGL----------------AAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMV  375 (473)
T ss_pred             HHHHHhc----------------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHH
Confidence            3322100                001123344555667788888888888888888866       45567789999999


Q ss_pred             HhHHHHHHHHHHHHhhhhhc
Q 007932          494 IGVGNFLNSFLVTLVDKVTG  513 (584)
Q Consensus       494 ~~lg~~lg~~l~~~i~~~~~  513 (584)
                      ..+|..+++.+.+.+.+..+
T Consensus       376 ~K~~~al~~~i~g~~l~~~G  395 (473)
T PRK10429        376 VKGGSAFAAFFIGVVLGLIG  395 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHcC
Confidence            99999999999988876554

>TIGR00788 fbt folate/biopterin transporter

Probab=99.70  E-value=9.5e-15  Score=157.93  Aligned_cols=386  Identities=14%  Similarity=0.117  Sum_probs=215.7

Q ss_pred             CcchhHHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc-----hhHHHH
Q 007932           26 KWKACAFL-VGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG-----RFWTFT   99 (584)
Q Consensus        26 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rk~~~~   99 (584)
                      +++..+.+ ....+.+... +.+...++.++.+++|+|+++.+...+...+...+-++ +|.++||+ +     ||+.++
T Consensus        23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~   99 (468)
T TIGR00788        23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLV   99 (468)
T ss_pred             CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHH
Confidence            34444444 4456666676 77777888899999999999998888888888888655 99999998 7     777777


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccc
Q 007932          100 LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV  179 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (584)
                      ++.++.. ...+..++..                 ........+.+++.+++.+.......++..|..+ +++   ..++
T Consensus       100 ~~~~l~~-~~~~~~l~~~-----------------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~---~~~~  157 (468)
T TIGR00788       100 LSGLLGS-AILYGLLPGK-----------------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESP---SAGP  157 (468)
T ss_pred             HHHHHHH-HHHHHhcccc-----------------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCC---CcCC
Confidence            7766552 1122222210                 0123334446778899999999999999999998 421   0233


Q ss_pred             eeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhc
Q 007932          180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNR  259 (584)
Q Consensus       180 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (584)
                      ...++.+.+.++|..+|+.++|.+.+.++|+..|++.++..++..+...+..++.....|+. ...              
T Consensus       158 ~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~-~~~--------------  222 (468)
T TIGR00788       158 SLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRI-GTY--------------  222 (468)
T ss_pred             CeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccc-ccc--------------
Confidence            44555555667999999999999999899999999887776666443333322110011110 000              


Q ss_pred             cccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhh
Q 007932          260 KIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTI  339 (584)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (584)
                              ....+    .....+  ..... ...+.+...                 .-.++.++....+.+..  +...
T Consensus       223 --------~~~~~----~~~~~~--~~~~~-~~~~~~l~~-----------------~l~~~~i~~~l~fifl~--~~~~  268 (468)
T TIGR00788       223 --------LEMNM----ALLTLG--VLANV-KVQILGLRG-----------------AIQLLEIAKPLIFIFLS--YANL  268 (468)
T ss_pred             --------chhhh----hhhhhh--HHHHH-HHHHHHHHH-----------------HHhcHHHHHHHHHHHHH--Hhhc
Confidence                    00000    000000  00000 000000000                 00012222211111110  1111


Q ss_pred             hccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHH
Q 007932          340 WAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAI  419 (584)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~  419 (584)
                      .....+.+.....  ....+   ....+.+.....++.+++..+.+++    .+|.       +..+.+.++.++.+++.
T Consensus       269 ~~~~~~~f~~~~~--~lG~s---~~~~G~~~~~~~v~~i~g~~~~~~~----~~~~-------~~r~~l~~~~~l~~~~~  332 (468)
T TIGR00788       269 PGASGSVFCATTQ--CLPGG---PSFSGMSKVVGNLGSLCGVGGYDRF----LKTF-------PYRLLFGVTTLLYTLSS  332 (468)
T ss_pred             CCCCceeEEEEcc--cCCCC---cchhhhHHHHHHHHHHHHHHHHHHH----HhhC-------CHHHHHHHHHHHHHHHH
Confidence            1222222222211  11111   1222333334445555555554444    3332       34455666666666555


Q ss_pred             HHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHH
Q 007932          420 AIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNF  499 (584)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~  499 (584)
                      ........ +.+.  ..+        ....++.+...++.+++.++...+...++.+.+|++.+|+..|+.++..++|..
T Consensus       333 ~~~~~l~~-~~~~--~~g--------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~  401 (468)
T TIGR00788       333 LFDLILVK-RWNL--AFG--------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSS  401 (468)
T ss_pred             hCceeeee-cccc--ccC--------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHH
Confidence            43221100 0000  000        012234455567788888888888899999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhh
Q 007932          500 LNSFLVTLVDKVT  512 (584)
Q Consensus       500 lg~~l~~~i~~~~  512 (584)
                      +++.+.+.+.+..
T Consensus       402 v~~~~gg~l~~~~  414 (468)
T TIGR00788       402 VSGFLGVLLMETI  414 (468)
T ss_pred             HHHHHHHHHHHHc
Confidence            9998888876543

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.2e-16  Score=160.12  Aligned_cols=149  Identities=13%  Similarity=0.050  Sum_probs=136.8

Q ss_pred             hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcch
Q 007932           58 QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQ  137 (584)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (584)
                      .++-+..+.|++.....+.+.+..++.|.+.||+ |+|-.+++|+..+...+++.++.                    .+
T Consensus       100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg--------------------~s  158 (464)
T KOG3764|consen  100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFG--------------------NS  158 (464)
T ss_pred             CccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHc--------------------ch
Confidence            4566778999999999999999999999999998 99999999999999999999997                    44


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHH
Q 007932          138 IAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPT  217 (584)
Q Consensus       138 ~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~  217 (584)
                      .++++++|.++|+|.++...+..++++|.||+++     +|++++|+.-.+..+|-.+||..+|.+.+..|.+.+|.+.+
T Consensus       159 y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~-----er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~  233 (464)
T KOG3764|consen  159 YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDN-----ERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLA  233 (464)
T ss_pred             hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccch-----hhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHH
Confidence            7789999999999999999999999999999987     79999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 007932          218 AGLLFSLVIFYIGSP  232 (584)
Q Consensus       218 ~~~~~~~~~~~~~~~  232 (584)
                      +..++-..+.++..+
T Consensus       234 ~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  234 IVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHHHHHheeC
Confidence            887777776665543

>PTZ00207 hypothetical protein; Provisional

Probab=99.69  E-value=1.6e-14  Score=157.48  Aligned_cols=159  Identities=11%  Similarity=0.030  Sum_probs=122.0

Q ss_pred             HHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007932           44 FYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKP  123 (584)
Q Consensus        44 ~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (584)
                      .|++. .....+++++|+|..+.+++.+... ...++.+++|+++||+ |||+++.++.+++.+++++++++.+-     
T Consensus        43 ~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~-----  114 (591)
T PTZ00207         43 MYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE-----  114 (591)
T ss_pred             HHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence            34443 3445678999999999998887643 4456777899999999 99999999999999999999886310     


Q ss_pred             CCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHH-Hhhhhhh
Q 007932          124 TCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALC-ATLGLVY  202 (584)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~  202 (584)
                               .-..+.+.+++.|++.|+|.+...+.....+.++||+       +|+++.++...+.++|+++ +++..++
T Consensus       115 ---------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        115 ---------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPS-------NRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             ---------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     0014688899999999999998888888899999974       3899999999999999985 5555555


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          203 IQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       203 l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +.  .+|+..|++.++..++..++.+
T Consensus       179 ~~--~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        179 FS--DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HH--HhHHHHHHHHHHHHHHHHHHHH
Confidence            44  3577777777666444444433

>PRK09848 glucuronide transporter; Provisional

Probab=99.68  E-value=6.6e-15  Score=158.69  Aligned_cols=155  Identities=8%  Similarity=-0.005  Sum_probs=103.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc---cchhHHH-HHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY---IGRFWTF-TLSSLIY  105 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~-~~~~~~~  105 (584)
                      .+.-....+..++.+..+.++++.|+++.+|+++.++|.+.+...+...+..++.|+++||.   .||||.+ +++.+..
T Consensus        10 ~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~   89 (448)
T PRK09848         10 IVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPL   89 (448)
T ss_pred             HHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHH
Confidence            33344556677777777788888999999999999999999999999999999999999994   2666655 5555544


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .+...++.....  ..           ........+++..++.+++.+...+...++..+..++.+     +|.+..++.
T Consensus        90 ~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-----~r~~~~~~r  151 (448)
T PRK09848         90 MIFSVLVFWVPT--DW-----------SHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQ-----SRARLGAAR  151 (448)
T ss_pred             HHHHHHHHhCcC--CC-----------CcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHH-----HHHHHHHHH
Confidence            444444322110  00           001123334455566788888888888888787777654     477766665


Q ss_pred             hhHH-----hHhHHHHhhhhhh
Q 007932          186 MFSS-----FIGALCATLGLVY  202 (584)
Q Consensus       186 ~~~~-----~~g~~~g~~~~~~  202 (584)
                      .++.     +++..++|.+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~p~i~~~  173 (448)
T PRK09848        152 GIAASLTFVCLAFLIGPSIKNS  173 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            5443     3455555655543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.68  E-value=1.1e-15  Score=159.31  Aligned_cols=174  Identities=12%  Similarity=0.065  Sum_probs=142.7

Q ss_pred             CcchhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh-hhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           26 KWKACA-FLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS-SVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        26 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      .|+..- ++|+..|+..+  -...++..+|+.+++|++..+ .|.+.+.+..++.++.+++|+++||+ |-||++.++.+
T Consensus        24 ~W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l  100 (511)
T TIGR00806        24 SWRVLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQAL  100 (511)
T ss_pred             chhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence            344433 34444444433  334566778999999999999 99999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      ...+..++++++.                    +...+.+.|++.|++.|... +...++..++|++      +|+++.+
T Consensus       101 ~Wsl~t~L~~fa~--------------------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k------ER~rats  153 (511)
T TIGR00806       101 SFVCVWLLLLLGT--------------------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS------RYQRAAA  153 (511)
T ss_pred             HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH------HHHHHHH
Confidence            9999999999873                    47789999999999999999 9999999999988      5999999


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccchhHHHH---HHHHHHHHHHHHHHHh
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLGWGLGYG---IPTAGLLFSLVIFYIG  230 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~---~~~~~~~~~~~~~~~~  230 (584)
                      +...+.++|.+++++++++ ...+||++-+.   +......+++++.++.
T Consensus       154 i~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       154 YSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999 45679986544   3444444554444443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.68  E-value=2.2e-15  Score=161.48  Aligned_cols=357  Identities=13%  Similarity=0.130  Sum_probs=225.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhh----cccchhHHHH-HHHHHHHHHHHH
Q 007932           37 EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIAD----TYIGRFWTFT-LSSLIYVLGMIL  111 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD----~~~Grk~~~~-~~~~~~~~~~~~  111 (584)
                      .+..++.......++..|+++.+|+++...+.+.....+...+..|+.|+++|    |+ ||||.++ ++.++.+++.++
T Consensus        10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l   88 (428)
T PF13347_consen   10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL   88 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence            45666666667778899999999999999999999999999999999999999    77 9777555 566777777666


Q ss_pred             HHHhhhcc-ccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          112 LTMAASLK-FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       112 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      +....  | .+.           .......+.+..++..++......+..++..|..++++     +|.+..++......
T Consensus        89 lf~~~--p~~~~-----------~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~-----~R~~l~~~~~~~~~  150 (428)
T PF13347_consen   89 LFSPP--PAGLS-----------FTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD-----ERTRLSSWRMIFSM  150 (428)
T ss_pred             hhccc--cchhh-----------hhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHh-----hhhhHHHHHHHHHH
Confidence            66431  1 000           01123335666667789999999999999999998765     69999999999999


Q ss_pred             HhHHHHhhhhhhhhccc-------chhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccC
Q 007932          191 IGALCATLGLVYIQENL-------GWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQL  263 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~-------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (584)
                      +|..+...+.+.+.+..       +|++...+.++..++..++.+...++.+.+.+++ .+..                 
T Consensus       151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~-~~~~-----------------  212 (428)
T PF13347_consen  151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ-EKKI-----------------  212 (428)
T ss_pred             HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc-cccc-----------------
Confidence            98876666666554322       5777777666665555444444333200000100 0000                 


Q ss_pred             CCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccc
Q 007932          264 PDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQI  343 (584)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (584)
                           ...                  +..                 +     ...+.|.........+.....+......
T Consensus       213 -----~~~------------------~~~-----------------~-----~~~~nr~~~~l~~~~~~~~~~~~~~~~~  247 (428)
T PF13347_consen  213 -----SLR------------------DSL-----------------R-----SLFRNRPFRILLLAFFLQWLAFALMNTF  247 (428)
T ss_pred             -----ccc------------------cch-----------------h-----hhcccchHHHHHHHHHHHHhhhhhhhhH
Confidence                 000                  000                 0     0001112222221211111111111111


Q ss_pred             cceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 007932          344 NTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAY  423 (584)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~  423 (584)
                      ..++....      ++  .....+.+.....++.++..+++.++.+|+++|+           .+..+.++.+++.++..
T Consensus       248 ~~y~~~~v------l~--~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----------~~~~~~~~~~~~~~~~~  308 (428)
T PF13347_consen  248 LPYYFTYV------LG--NEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-----------VYIIGLLLAALGFLLLF  308 (428)
T ss_pred             HHHHHHHH------hc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-----------ehhhhHHHHHHHHHHHH
Confidence            11111110      10  0111223344556667777777777755554442           36777777777777666


Q ss_pred             HHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCc-------hhHHHHHHHHHHHHhH
Q 007932          424 AVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPE-------DMQSLGTTFFTSGIGV  496 (584)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~-------~~rg~~~gi~~~~~~l  496 (584)
                      +..                   ..+.++.++..++.+++.+..+...+.+..|..+.       +..|...|++++...+
T Consensus       309 ~~~-------------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~  369 (428)
T PF13347_consen  309 FLG-------------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI  369 (428)
T ss_pred             HHH-------------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence            552                   13567788888899999999999999999998873       4569999999999999


Q ss_pred             HHHHHHHHHHHhhhhhc
Q 007932          497 GNFLNSFLVTLVDKVTG  513 (584)
Q Consensus       497 g~~lg~~l~~~i~~~~~  513 (584)
                      +..++..+.+.+....+
T Consensus       370 ~~~la~~i~g~~l~~~G  386 (428)
T PF13347_consen  370 GQGLAGAIVGLLLALVG  386 (428)
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            99999999988776554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.67  E-value=2.7e-14  Score=150.97  Aligned_cols=177  Identities=12%  Similarity=0.001  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhH--HHHHHHHHHHhhhHh-HHHhhcccchhHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRN--VNNWSGVVWITPLLG-AYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~-G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      ...+....+.+...+..+.+.+|.|++ +.|.|..+.|..  .....+...+.+|+. ++..||+ ||||..++.+.+..
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence            344455566777777777788888886 559999999986  355677776777776 6689998 99999766654322


Q ss_pred             H-HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          107 L-GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       107 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      . +...+....  +              .......+....++.++..+...+...++..|..+++      +++...+..
T Consensus        81 ~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~------~~~~~~~~~  138 (390)
T TIGR02718        81 SACLASLALVG--P--------------DVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGR------TLAKGNAVQ  138 (390)
T ss_pred             HHHHHHHHcCC--c--------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhhHHHHHH
Confidence            2 222222110  0              0011222333444455555666666666667766655      367677777


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      ..+..+|..+|+.+.+++.+..||+..|++.++..++..+..+..
T Consensus       139 ~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       139 IAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            778888999998888899999999999999887766555554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.65  E-value=5.1e-15  Score=159.94  Aligned_cols=421  Identities=13%  Similarity=0.042  Sum_probs=252.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH---HHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNL---VNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~---~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      -|++++..+..++..+++....   ...+.++++.+..+++|+.++......+..|+.+.+.||+ |.|.+.++|.++..
T Consensus        44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~  122 (509)
T KOG2504|consen   44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA  122 (509)
T ss_pred             eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence            4666666666666666554433   3456788999999999999999999999999999999999 99999999999999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHH-HHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLY-IIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      +|.++..+++                    +.+.+++..- +.|+|.|..+....+++..+|+.+       |+.+.++.
T Consensus       123 ~g~~lssF~~--------------------~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia  175 (509)
T KOG2504|consen  123 LGLLLSSFAT--------------------SLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIA  175 (509)
T ss_pred             HHHHHHHHHh--------------------hHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhh
Confidence            9999999984                    4655555554 568999999999999999888754       99999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHH-hhccccCC
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAF-RNRKIQLP  264 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  264 (584)
                      ..+..+|..+-|.+..++.+.+|||..+++.+.+.+-..+.....+|......|....+... ........ .......+
T Consensus       176 ~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  254 (509)
T KOG2504|consen  176 VSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRN-SAASVESTPKPVELRIS  254 (509)
T ss_pred             hccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhcc-ccccccccccccccccc
Confidence            99999999999999999999999999999887776555555555555322221110000000 00000000 00000000


Q ss_pred             -CCCCCccccc-ccccccc-ccccccCCCc--chhhhHHHHhcCCCCCCCCCcccccchhhHHHHH-HHHHHHHhhhhhh
Q 007932          265 -DNPSELHEFD-TQDYIRS-GKRQVVHSPA--FRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLG-MALIWLVTLIPST  338 (584)
Q Consensus       265 -~~~~~~~~~~-~~~~~~~-~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  338 (584)
                       .+........ +..+..+ ..........  ...+|...+                 .+ +.++. .....+....+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll-----------------~~-~~fl~~~~~~~~~~~g~~~  316 (509)
T KOG2504|consen  255 ERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLL-----------------KD-PKFLLLALSNLFAYLGFNV  316 (509)
T ss_pred             cCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHH-----------------cC-chHHHHHHHHHHHHHHHHH
Confidence             0000000000 0000000 0000000000  000000000                 01 11111 1111111211111


Q ss_pred             hhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHH
Q 007932          339 IWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMA  418 (584)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~  418 (584)
                      .....+.+..      +..   .-......+.++......++-++.+.+.|+-.         ++......+++++.+++
T Consensus       317 p~~~l~~~~~------~~g---~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~---------~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  317 PFVYLPSYAK------SLG---LSSNDAAFLLSIIGVSDIIGRIILGLLADKPG---------IRALVLFLLTLLIAGLA  378 (509)
T ss_pred             HHHHHHHHHh------hcC---CChhhhHHHHHHHHHhhhhhhhhhhhhcCccc---------cchHHHHHHHHHHHHHH
Confidence            1111111111      111   11223334455555666666666666644333         12334456677777766


Q ss_pred             HHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHH
Q 007932          419 IAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGN  498 (584)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~  498 (584)
                      ..+....                     .+.+.++...+++|++.+.........+.+.++.+.-+.+.|+..++..++.
T Consensus       379 ~~~~p~~---------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~  437 (509)
T KOG2504|consen  379 RLFLPFA---------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGA  437 (509)
T ss_pred             HHHHHHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHH
Confidence            6555554                     3445677777888888888888777788899999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhh
Q 007932          499 FLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWA  551 (584)
Q Consensus       499 ~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~  551 (584)
                      .+|+-+.+.+.+.+               ++|+..|++.++..+++....++.
T Consensus       438 l~gpPiag~~~d~t---------------g~Y~~~f~~~g~~~~~s~~~~~~~  475 (509)
T KOG2504|consen  438 LVGPPIAGLLYDIT---------------GNYDHAFYFCGLCFLLSAVLLLIL  475 (509)
T ss_pred             HcCcccceeeeecc---------------CCeeeehhhcChHHHHHHHHHHHh
Confidence            99988876544322               236667888888777776544443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.65  E-value=8.7e-14  Score=146.65  Aligned_cols=376  Identities=13%  Similarity=0.124  Sum_probs=204.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 007932           37 EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAA  116 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~  116 (584)
                      .++..+.+-...++++.|+++ .|+|..|+|.+.+...+...+.+++.|+++||...+||.+.+..++.++...+.... 
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~-~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~-   88 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLES-RGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFS-   88 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHh-
Confidence            344444444556888899875 589999999999999999999999999999998346777777666655554444433 


Q ss_pred             hccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHH
Q 007932          117 SLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCA  196 (584)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  196 (584)
                                         .+.+.+++..++..+......|...++..+...+        ++.-++-......+|..++
T Consensus        89 -------------------~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--------~~~~YG~iRlwGSiGf~~~  141 (400)
T PF03825_consen   89 -------------------SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--------RGKDYGRIRLWGSIGFIVA  141 (400)
T ss_pred             -------------------ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--------ccCCCCcchhhhhHHHHHH
Confidence                               3456666667777888787788888877776652        3455666666677777776


Q ss_pred             hhh-hhhhhcccc---hhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccc
Q 007932          197 TLG-LVYIQENLG---WGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHE  272 (584)
Q Consensus       197 ~~~-~~~l~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (584)
                      ... ++++....+   ..+.+++.+...++.....+. .|+.+.++.++ .+..                          
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~~~~~-~~~~--------------------------  193 (400)
T PF03825_consen  142 ALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPKRSAK-ESVK--------------------------  193 (400)
T ss_pred             HHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccccccC-CCcc--------------------------
Confidence            443 233332222   234455554433222222222 22211000000 0000                          


Q ss_pred             cccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHH-HHHHHHhhhhhhhhccccceEEEec
Q 007932          273 FDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGM-ALIWLVTLIPSTIWAQINTLFVKQG  351 (584)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  351 (584)
                                  +....+..+                       .-++|+++.. ...++........+.. .+.++.+.
T Consensus       194 ------------~~~~~~~~~-----------------------llk~~~~~~Fll~~~l~~~~~~~~~~f-~~~yl~~~  237 (400)
T PF03825_consen  194 ------------KLLGLDALK-----------------------LLKNPRFLVFLLAAFLIGISHAAYYTF-FSIYLQEL  237 (400)
T ss_pred             ------------cccchHHHH-----------------------HhcCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHc
Confidence                        000000000                       0001122111 1111222222221111 12121211


Q ss_pred             ccccCCCCCCcc-cCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007932          352 TTLNRSLSPSFR-IPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRM  430 (584)
Q Consensus       352 ~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~  430 (584)
                             + ++. ...+.+..+..+.-++.-...+    ++.+|.       +..+.+.++.+..++=..+.....    
T Consensus       238 -------g-g~~~~~~g~~~~l~~~aEi~~f~~~~----~~~~r~-------g~~~ll~~a~~~~~vR~~l~a~~~----  294 (400)
T PF03825_consen  238 -------G-GYSGSTIGILWALGVVAEIPFFFFSG----RFLKRF-------GIKWLLLLALVAYAVRWLLYAYFS----  294 (400)
T ss_pred             -------c-cchhhHHHHHHHHHHHHHHHHHHHHH----HHHHhc-------CHHHHHHHHHHHHHHHHHHHHHhc----
Confidence                   1 011 1111222233333334333333    334443       344556777666665555554441    


Q ss_pred             hhccccccCCCCCccceeehhh----HHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHH-HHhHHHHHHHHHH
Q 007932          431 HVIRVQHISGPKQIVPMSIFWL----LPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTS-GIGVGNFLNSFLV  505 (584)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~l----i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~-~~~lg~~lg~~l~  505 (584)
                                      .++++.    +....+.|+..++.......|+.+.+|++.|++++++++. ..++|+.+|..+.
T Consensus       295 ----------------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig  358 (400)
T PF03825_consen  295 ----------------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG  358 (400)
T ss_pred             ----------------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence                            122222    2223568999999999999999999999999999999885 5679999999999


Q ss_pred             HHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932          506 TLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSR  554 (584)
Q Consensus       506 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~  554 (584)
                      +.+.+..+.++          ...+..+|.+.+++.++..+.++++.|+
T Consensus       359 G~l~~~~g~~~----------~~~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  359 GWLYDAFGARG----------MFDWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHhcchh----------hhhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            88875433211          0112234555666666665555555443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.65  E-value=4.2e-14  Score=153.28  Aligned_cols=151  Identities=15%  Similarity=0.205  Sum_probs=118.1

Q ss_pred             HHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 007932           50 NLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGI  129 (584)
Q Consensus        50 ~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (584)
                      ....++..++|-+ ....|+...+.++..+..++.|+|+|.+ |||..++.+.++..+|.++++.+              
T Consensus        65 ~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA--------------  128 (599)
T PF06609_consen   65 SILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATA--------------  128 (599)
T ss_pred             HHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcC--------------
Confidence            3446788889865 5567899999999999999999999998 99999999999999999999977              


Q ss_pred             cCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccch
Q 007932          130 CSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  209 (584)
                            ++...++++-.+.|+|.|... .....++|..|.+      .|.....+.....-+...+++.++..+..+.+|
T Consensus       129 ------~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k------~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W  195 (599)
T PF06609_consen  129 ------QNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK------WRGLGLAIASIPFIITTWISPLIAQLFAAHSGW  195 (599)
T ss_pred             ------CcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc------hhhhHhHHHHHHHHhhhcccHHHHHHhccCCCc
Confidence                  567779999999999977765 4456689999977      466655555544444444566666666666789


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 007932          210 GLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       210 ~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ||.|++.++...++++..++
T Consensus       196 Rw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  196 RWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             chHHHHHHHHHHHHHHHHHH
Confidence            99999988876666554443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.9e-14  Score=145.43  Aligned_cols=154  Identities=18%  Similarity=0.110  Sum_probs=129.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.-.+++.+-|+.+-......-.+.+.+++.++++..+++++...+..++.+++++.|++.+|+ |+|+.+++|+.++++
T Consensus        12 ~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~av   90 (422)
T COG0738          12 KLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAV   90 (422)
T ss_pred             eeHHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHH
Confidence            4445555555555555555666677788999999999999999999999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      |+.+..-+++                 ..++..++++.++.|.|.|......+.+++...++++      .++-++..+.
T Consensus        91 g~~lF~pAa~-----------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~  147 (422)
T COG0738          91 GAALFWPAAS-----------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQA  147 (422)
T ss_pred             HHHHHhhhhh-----------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHH
Confidence            9988865542                 2568889999999999999999999999999999863      4555667777


Q ss_pred             HHhHhHHHHhhhhhhhhc
Q 007932          188 SSFIGALCATLGLVYIQE  205 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~  205 (584)
                      ...+|+.+||.+++++..
T Consensus       148 fn~lGa~~gp~~g~~lil  165 (422)
T COG0738         148 FNGLGAILGPLLGSSLIL  165 (422)
T ss_pred             hhhhHHHHHHHHHHHHHH
Confidence            889999999999998866

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.62  E-value=5.4e-14  Score=150.61  Aligned_cols=150  Identities=11%  Similarity=0.076  Sum_probs=125.8

Q ss_pred             hhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCc
Q 007932           56 TSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTST  135 (584)
Q Consensus        56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (584)
                      .++++....+.+.+.+++.+++.++.+++|.|.||+ .-.+.+....+...+-.++....                    
T Consensus        73 ~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~--------------------  131 (495)
T KOG2533|consen   73 KEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAV--------------------  131 (495)
T ss_pred             ccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence            467888889999999999999999999999999999 86666666666555555444444                    


Q ss_pred             chHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhh------cccch
Q 007932          136 SQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQ------ENLGW  209 (584)
Q Consensus       136 ~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~------~~~~~  209 (584)
                      .+.+.+++.|++.|+..++.+|+...+++.++.++      +|+.-+++++...++|.++|.++...+.      ...||
T Consensus       132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~------e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW  205 (495)
T KOG2533|consen  132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKS------ERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW  205 (495)
T ss_pred             hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChh------hhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence            56778999999999999999999999999999988      5999999999999999999999888763      34689


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhCC
Q 007932          210 GLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       210 ~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      ||.|++.+++.++..++.++..|
T Consensus       206 ~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  206 RWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             eeehhHHHHHHHHHHheEEEEec
Confidence            99999999886666666555444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.57  E-value=3e-13  Score=134.86  Aligned_cols=346  Identities=12%  Similarity=0.076  Sum_probs=227.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      +..++++.+-.+...-++-+.+ .-+.+++|+|.+.+|+++++..+...+.+++..+++.|+ |..|.+..++++.++|.
T Consensus        14 i~gIvlia~NLR~~itsvgPLL-~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~   91 (395)
T COG2807          14 LAGIVLIAFNLRPAITSVGPLL-DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGI   91 (395)
T ss_pred             HHHHHHHHhccchhhhhhhhhH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence            3334444444455544444433 356789999999999999999999999999999999998 99999999999988887


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      ++=...                     +...++.+-.+.|.|.+..+...+..+-+.||.+       -+..++.|..+.
T Consensus        92 ~iR~~~---------------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl  143 (395)
T COG2807          92 LIRSLG---------------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSL  143 (395)
T ss_pred             HHHhcc---------------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHH
Confidence            766553                     3567889999999999999999999999999976       699999999999


Q ss_pred             hHhHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCC
Q 007932          190 FIGALCATLGLVYIQENL-GWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPS  268 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (584)
                      ++|+++++.+...+.++. ||+....+=+...++++++++.-..+.+  .+.. +.                   +.   
T Consensus       144 ~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~--~~~~-~~-------------------~~---  198 (395)
T COG2807         144 GAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQ--AASI-AT-------------------KL---  198 (395)
T ss_pred             HHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccc--cccc-cc-------------------cc---
Confidence            999999999999998877 7999888777777777766655322111  1111 00                   00   


Q ss_pred             CccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceEE
Q 007932          269 ELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFV  348 (584)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (584)
                                   .++.                     ..|+        +.........+-+....+|+...+++.++.
T Consensus       199 -------------~~~~---------------------~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili  236 (395)
T COG2807         199 -------------VSVR---------------------KVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILI  236 (395)
T ss_pred             -------------cccc---------------------cccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence                         0000                     0010        001111122233456677777788777665


Q ss_pred             EecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 007932          349 KQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVR  428 (584)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~  428 (584)
                      .+...         ....+.+..+..+..+..+.....+..|   +.+.|       ........++.++..-+-+..  
T Consensus       237 ~~G~s---------a~~aG~llsl~~l~~~~~~ll~P~la~R---~~n~r-------~~~~~~~~~~l~G~~G~~~~P--  295 (395)
T COG2807         237 DRGLS---------AAEAGSLLSLMQLAQLPTALLIPLLARR---SKNQR-------PLVVLALLLMLVGLVGLLLAP--  295 (395)
T ss_pred             HcCCC---------HHHhhhHHHHHHHHHHHHHHHHHHHHHH---hcccc-------hHHHHHHHHHHHHHHHHHHhh--
Confidence            55321         1223344444444444444444334322   11111       123333444444443332321  


Q ss_pred             hhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCC-chhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007932          429 RMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP-EDMQSLGTTFFTSGIGVGNFLNSFLVTL  507 (584)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~lg~~l~~~  507 (584)
                                      ....++|    .++.|+|.+..+|...+++.+..+ ++..+.-.|+.+..+.+-..+||.+.+.
T Consensus       296 ----------------~~~~~lw----~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~  355 (395)
T COG2807         296 ----------------GQLPILW----ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF  355 (395)
T ss_pred             ----------------hhHHHHH----HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence                            1112222    478888888888888888876655 5677778888888888888999999988


Q ss_pred             hhhhhc
Q 007932          508 VDKVTG  513 (584)
Q Consensus       508 i~~~~~  513 (584)
                      +++..+
T Consensus       356 lhDa~g  361 (395)
T COG2807         356 LHDATG  361 (395)
T ss_pred             HHHhcC
Confidence            876553

>PRK11462 putative transporter; Provisional

Probab=99.57  E-value=2.5e-13  Score=146.66  Aligned_cols=174  Identities=11%  Similarity=0.095  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc---cchhHHHH-HHHHHHHH
Q 007932           32 FLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY---IGRFWTFT-LSSLIYVL  107 (584)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~~-~~~~~~~~  107 (584)
                      .--+..+..++.+..+..++..|.++.+|+++..+|.+..+.-+.-.+.-|+.|+++||.   .||||..+ ++.+.+++
T Consensus        13 ~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i   92 (460)
T PRK11462         13 GYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGI   92 (460)
T ss_pred             hhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHH
Confidence            334566667777777888899999999999999999999999999999999999999972   38877665 45567777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +.+++....   ...           .......+.+.-++..++.......-.++.+|..++.+     +|++..++...
T Consensus        93 ~~~llf~~p---~~s-----------~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~-----eRt~l~s~r~~  153 (460)
T PRK11462         93 VCVLAYSTP---DLS-----------MNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPT-----QRISLQSWRFV  153 (460)
T ss_pred             HHHHHHhCC---CCC-----------cchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHH-----HHHHHHHHHHH
Confidence            766555431   100           01223345555566788888888888899999998765     69999999999


Q ss_pred             HHhHhHHHHhhhhhhhhccc-------chhHHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENL-------GWGLGYGIPTAGLLFSL  224 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~-------~~~~~f~~~~~~~~~~~  224 (584)
                      +.++|..+++.+...+.+..       +|+....+.++..++..
T Consensus       154 ~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~  197 (460)
T PRK11462        154 LATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMML  197 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHH
Confidence            99999888877765544332       45655544444433333

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.57  E-value=4.1e-14  Score=146.91  Aligned_cols=387  Identities=11%  Similarity=-0.021  Sum_probs=214.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH-
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV-  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~-  106 (584)
                      +..+.+....++..+..-...++.+.|++++.|+|.+++|.+.+...+...+.+|+.|.++||+ |.||-+++.+.+.. 
T Consensus         7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~   85 (412)
T PF01306_consen    7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL   85 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence            4566666666666666677789999999998999999999999999999999999999999998 97776554433222 


Q ss_pred             -HHHHHH-HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          107 -LGMILL-TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       107 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                       .+.... .+..-+.                .+   +.++.++.++..+......... .|.+-++..   ++.+.-+|-
T Consensus        86 l~~pff~~v~~pll~----------------~n---~~lg~iig~i~l~~~f~~~~~~-~Ea~~er~s---r~~~feYG~  142 (412)
T PF01306_consen   86 LFGPFFIYVFGPLLQ----------------SN---FWLGAIIGGIYLGLVFNAGVPL-SEAYAERVS---RRNGFEYGR  142 (412)
T ss_dssp             TCHHHHHHTHHHHHH----------------TT----HHHHHHTTTTTTTTTTTHHHH-HHHHHHHHH---HHHSS-HHH
T ss_pred             HHHHHHHHHHHHHHH----------------HH---HHHHHHHHHHHHHHHHcccchH-HHHHHHHHH---HHhcCCcch
Confidence             222222 2211000                11   3333334344444333222221 133322211   024455566


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCC
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLP  264 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (584)
                      ..+...+|.+++..++|.+.+ .+....|++.....++..++.+..++..+++.+..                       
T Consensus       143 ~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~-----------------------  198 (412)
T PF01306_consen  143 ARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA-----------------------  198 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-----------------------
T ss_pred             HHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-----------------------
Confidence            677788999999999999876 45677888766554444444333332111110000                       


Q ss_pred             CCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhh-hccc
Q 007932          265 DNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTI-WAQI  343 (584)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  343 (584)
                      +...   +               +.++.+..+-.                 +.-+.|+++....+.......+.. -+|+
T Consensus       199 ~~~~---~---------------~~~~~~~~~~~-----------------~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf  243 (412)
T PF01306_consen  199 DALG---A---------------KKDKVSLKDVL-----------------SLFKMRNFWFFVLFVIGVAAIYDVFDQQF  243 (412)
T ss_dssp             TTSS---S---------------------HHHHH-----------------HHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccc---c---------------CCCCCcHHHHH-----------------HHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000   0               00000000000                 011234555444444444333333 3444


Q ss_pred             cceEEEecccccCCCCCCcccCcc---ccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHH
Q 007932          344 NTLFVKQGTTLNRSLSPSFRIPAA---SLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIA  420 (584)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~  420 (584)
                      +.++.......        ...+.   .+.++..+.-.+...+..++++|.+           +...+.++.+++++=..
T Consensus       244 ~~y~~~~f~~~--------~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig-----------~k~~Lllag~i~~iRi~  304 (412)
T PF01306_consen  244 PIYFASFFQSA--------GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIG-----------AKNLLLLAGVIMAIRII  304 (412)
T ss_dssp             HHHHHHTSSSH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccc--------ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcC-----------hHhHHHHHHHHHHHHHH
Confidence            33332111000        11112   2223333333344334444443333           33456667666666666


Q ss_pred             HHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHH-HHHHhHHHH
Q 007932          421 IAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFF-TSGIGVGNF  499 (584)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~  499 (584)
                      ..+..                     .+++++.+.-.+.++-..+......-|+.+.+|++..++...+. ++..++|..
T Consensus       305 ~~~~~---------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~  363 (412)
T PF01306_consen  305 GSGFA---------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGII  363 (412)
T ss_dssp             HHHT-----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHH
T ss_pred             HHhhh---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH
Confidence            66555                     46677888888999999899999999999999999999999885 588888888


Q ss_pred             HHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhh
Q 007932          500 LNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASS  553 (584)
Q Consensus       500 lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~  553 (584)
                      +.+.+.+.+.+..                ++...|++++.+.+...++-.+..+
T Consensus       364 i~s~~~G~lyd~~----------------G~~~tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  364 ILSPLAGYLYDRI----------------GFQHTYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHhhhHHhhHhhc----------------CcHHHHHHHHHHHHHHHHHheeeec
Confidence            8888888876533                3345688888777666655555443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.52  E-value=8.7e-12  Score=130.95  Aligned_cols=369  Identities=14%  Similarity=0.119  Sum_probs=224.9

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc---cchhHH-HHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY---IGRFWT-FTLSS  102 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~-~~~~~  102 (584)
                      .|+-+.--...+..+..+-.+..++.-|.++..|+++..+|.+..+.-+.-.+.-|+.|.+.||.   .||+|- ++++.
T Consensus        11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~   90 (467)
T COG2211          11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA   90 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence            34445556667777777778888999999999999999999999999999999999999999983   276654 55566


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      +.+++...++..+.+. +             ......-.++.-.+.+++.....-.-.++.++..++.+     +|.+..
T Consensus        91 ip~~i~~~l~F~~p~~-~-------------~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~-----ER~~l~  151 (467)
T COG2211          91 IPFAIVAVLLFITPDF-S-------------MTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQ-----ERASLT  151 (467)
T ss_pred             HHHHHHHHHHHcCCCc-c-------------cCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHH-----HHHHHH
Confidence            7778777777766320 0             11334456666778899999999899999999998765     799999


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhc-------ccchhHHHHHHHHHHHHHHHHHHHh-CCceeecCCCCCChhhhhHHHHHH
Q 007932          183 NWWMFSSFIGALCATLGLVYIQE-------NLGWGLGYGIPTAGLLFSLVIFYIG-SPIYRHKIRKTKSPARDLIRVPIA  254 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~-------~~~~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  254 (584)
                      ++.....++|..+...+.+.+..       ..||+..-.+.+++..+..+..+.. +++..+..+.+ +.          
T Consensus       152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~-~~----------  220 (467)
T COG2211         152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTK-TG----------  220 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc-cc----------
Confidence            99999999998877666655543       2356555554444443443333332 22211111111 00          


Q ss_pred             HHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhh
Q 007932          255 AFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTL  334 (584)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (584)
                                                         ...++.+.....                ...|.++..+...+...
T Consensus       221 -----------------------------------~~~~~~~~~~~~----------------~~Nrp~~~~l~~~l~~~  249 (467)
T COG2211         221 -----------------------------------VKLKLKDSFLLI----------------FKNRPLLLLLLMNLLLF  249 (467)
T ss_pred             -----------------------------------ccccHHHHHHHH----------------HccchHHHHHHHHHHHH
Confidence                                               000000000000                01122222222222222


Q ss_pred             hhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHH
Q 007932          335 IPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVI  414 (584)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l  414 (584)
                      +...+......++....  ++..     ...............+++.++..++..++++|           +....+.++
T Consensus       250 ~~~~i~~s~~~yy~~y~--lg~~-----~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk-----------~~~~~~~~~  311 (467)
T COG2211         250 IAFNIRGSIMVYYVTYV--LGDP-----ELFAYLLLLASGAGLLIGLILWPRLVKKFGKK-----------KLFLIGLLL  311 (467)
T ss_pred             HHHHHHhhhhheeEEEE--cCCh-----HHHHHHHHHHHHHHHHHHHHhHHHHHHHhchH-----------HHHHHHHHH
Confidence            22222222222222221  1110     11111222223333333344444443333333           446777777


Q ss_pred             HHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCC-------chhHHHHH
Q 007932          415 QVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSP-------EDMQSLGT  487 (584)
Q Consensus       415 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P-------~~~rg~~~  487 (584)
                      ..++.+...+..                   ..+.++.+...++.+++.+..++..++++.|.+.       .+..|...
T Consensus       312 ~~i~~~~~~f~~-------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~  372 (467)
T COG2211         312 LAVGYLLLYFTP-------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVY  372 (467)
T ss_pred             HHHHHHHHHhhc-------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHH
Confidence            777776666551                   1234455556688889999999999999987754       35678899


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhhhhc
Q 007932          488 TFFTSGIGVGNFLNSFLVTLVDKVTG  513 (584)
Q Consensus       488 gi~~~~~~lg~~lg~~l~~~i~~~~~  513 (584)
                      |.+.++.-+|..++..+.+.+....+
T Consensus       373 s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         373 SGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999988775443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.46  E-value=1.5e-12  Score=137.78  Aligned_cols=176  Identities=14%  Similarity=0.022  Sum_probs=133.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +++..+............++.+..+.|.|+++++|.++.+.+.+.+...++..++.+++|+++||+ |||+.+..+.+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~  292 (393)
T PRK15011        214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG  292 (393)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence            334444444444555555566667889999999999999999888887788888999999999998 9999888776655


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .+....+...                    .+.+.+.+.+++.+++.|...+..+.+..|.+|++       ++++.+++
T Consensus       293 ~~~~~~~~~~--------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-------~g~~~~~~  345 (393)
T PRK15011        293 VCFYAGMLMA--------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-------AGSATTLY  345 (393)
T ss_pred             HHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cchHHHHH
Confidence            5544333332                    23555667777777777766666677788888744       78999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +...++|..++|.++|.+.+.+||+..|.+.++..+++.+..+.
T Consensus       346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            88899999999999999999899999998877776666655544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.45  E-value=1.2e-12  Score=142.77  Aligned_cols=182  Identities=13%  Similarity=0.100  Sum_probs=132.4

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +++.+.......++....+|++..++|.|+++.+|++..+.++......++..++.+++|+++||+ |||++++++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~  326 (490)
T PRK10642        248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL  326 (490)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            344444444455667788999999999999989999988888888888889999999999999999 9999998887654


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.+++.....                 ..+...+++++++.+++.+...+....++.|.+|++      .|+++.++.
T Consensus       327 ~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~------~Rg~~~g~~  383 (490)
T PRK10642        327 FVLAIPAFILIN-----------------SNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTH------IRYSALAAA  383 (490)
T ss_pred             HHHHHHHHHHHh-----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------cchHHHHHH
Confidence            444333222110                 133556778888888877766677778888999988      599999975


Q ss_pred             hhHHhHhHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHhC
Q 007932          186 MFSSFIGALCATLGLVYIQENL-GWGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      +....+++.++|.+.+++.+.. +|+.++++..+..++.++..++.+
T Consensus       384 ~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p  430 (490)
T PRK10642        384 FNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK  430 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            5556677788999999987754 467666655555445544444443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.43  E-value=8e-14  Score=133.35  Aligned_cols=134  Identities=10%  Similarity=0.123  Sum_probs=112.2

Q ss_pred             HHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 007932           51 LVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGIC  130 (584)
Q Consensus        51 ~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (584)
                      +.++...+.+++.++..++.+.|+.-..+.+.++|++.||.+|-|..-++-+.+..+|-++.+....             
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi-------------  132 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGI-------------  132 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchH-------------
Confidence            4567777788888888899999999999999999999999879887766666666677666654321             


Q ss_pred             CCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhccc
Q 007932          131 SKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL  207 (584)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  207 (584)
                          ...+|++..+|++.|+|.-....+.+.+..-+|..+|      .+.+++++..+..+|..+-..+.+++.++.
T Consensus       133 ----~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~  199 (459)
T KOG4686|consen  133 ----SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTM  199 (459)
T ss_pred             ----HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHH
Confidence                1568999999999999998888999999999999984      999999999999999988878888887654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.5e-12  Score=130.91  Aligned_cols=179  Identities=19%  Similarity=0.205  Sum_probs=149.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhccc-chhHHH-HHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYI-GRFWTF-TLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grk~~~-~~~~~~~  105 (584)
                      |.+|+++++.++..+..|++..+.|+|+++..|+|..++++..+.+..+...++++.||++||++ |||... ++.+++.
T Consensus       252 k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i  331 (448)
T COG2271         252 KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLI  331 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            77899999999999999999999999999999999999999999999999999999999999987 666544 4444455


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.+.+..+.                  ..+..+..++.+.+|+...+.+-.+-....|..|.+      --|++.|..
T Consensus       332 ~~~~~~~w~~~------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~------AaGtA~Gf~  387 (448)
T COG2271         332 TASLVLYWLAP------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKK------AAGTATGFV  387 (448)
T ss_pred             HHHHHHHHcCC------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHh------hccchhchh
Confidence            55555555442                  135678888888889888887777778888998887      489999999


Q ss_pred             hhHHhH-hHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          186 MFSSFI-GALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       186 ~~~~~~-g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      ..+.-+ |+..+....+++.+.+||...|.+..+..+++.+++...
T Consensus       388 Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~  433 (448)
T COG2271         388 GLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV  433 (448)
T ss_pred             hhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence            999988 999999999999999999999998777766666555443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.40  E-value=9.5e-11  Score=126.11  Aligned_cols=84  Identities=19%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             hhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccch
Q 007932          451 WLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHL  530 (584)
Q Consensus       451 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~  530 (584)
                      -+.+..++.|+..+...+..-++..++.|++..+...|++.+....++++||.+.+.+.+.++               +.
T Consensus       382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~  446 (477)
T PF11700_consen  382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQ  446 (477)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------Cc
Confidence            345556788999999999999999999999999999999999999999999999999876543               22


Q ss_pred             hHHHHHHHHHHHHHHHHHH
Q 007932          531 DYYYGFLMVISILNLGAFF  549 (584)
Q Consensus       531 ~~~f~~~~~~~~~~~l~~~  549 (584)
                      .+.+..+.++.+++++++.
T Consensus       447 r~g~~~l~~lf~~gl~ll~  465 (477)
T PF11700_consen  447 RYGFLFLLVLFLIGLILLF  465 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHh
Confidence            3446666666666655443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.36  E-value=5.4e-12  Score=131.71  Aligned_cols=170  Identities=14%  Similarity=0.036  Sum_probs=134.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..+......+...+.......+.+.|. +++|.+..+.+.+...+.++..++.++.|+++||+ |||+.+.++.++..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~  282 (377)
T TIGR00890       205 PQFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAV  282 (377)
T ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHH
Confidence            3445555555555555555556666665 56889988899999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +.+++....+                  .+...+.+..++.+++.|...+..++++.|.+|++      +|+++.++.+.
T Consensus       283 ~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~------~~~~~~g~~~~  338 (377)
T TIGR00890       283 GMAAMLFIPM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA------NSAANYGFLYT  338 (377)
T ss_pred             HHHHHHHccc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh------hhhhHhHHHHH
Confidence            8776665421                  12333455667788888888888888999999988      59999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFS  223 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~  223 (584)
                      ..++|..++|.+.+++.+..||++.|.+.++..+++
T Consensus       339 ~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       339 AKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            999999999999999999999999998877655544

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.36  E-value=2.7e-10  Score=116.72  Aligned_cols=379  Identities=13%  Similarity=0.090  Sum_probs=212.3

Q ss_pred             hhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc-----hhHHHHH-HHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007932           55 LTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG-----RFWTFTL-SSLIYVLGMILLTMAASLKFMKPTCTNG  128 (584)
Q Consensus        55 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-----rk~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (584)
                      +..++++...-.+..+....+.+. ..+..|+.+|+. +     ||.-+++ |.++++.+..+..++.-.  +.++....
T Consensus         6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~--l~~~~~~~   81 (403)
T PF03209_consen    6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLL--LAESGQQS   81 (403)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHH--Hccccccc
Confidence            346788888888888887777665 588999999998 7     6665554 455666666555554311  11100000


Q ss_pred             CcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccc
Q 007932          129 ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLG  208 (584)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  208 (584)
                        +.+.........++..+.|+|.+....+..++++|..|++      +|+++.++.+.+.-+|.+++..+.+.+.+.++
T Consensus        82 --~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~------~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s  153 (403)
T PF03209_consen   82 --SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEE------RRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS  153 (403)
T ss_pred             --ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHh------hhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence              1111222234445555678898888999999999999998      69999999999999999999999998887766


Q ss_pred             hhHHHH-HH---HHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccc
Q 007932          209 WGLGYG-IP---TAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKR  284 (584)
Q Consensus       209 ~~~~f~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (584)
                      ..-..- +.   .+...+..+..+-..++.++..+..                                           
T Consensus       154 ~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~-------------------------------------------  190 (403)
T PF03209_consen  154 PERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA-------------------------------------------  190 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC-------------------------------------------
Confidence            332222 22   2222222222222111111110000                                           


Q ss_pred             cccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceEEEecccccCCCCCCccc
Q 007932          285 QVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRI  364 (584)
Q Consensus       285 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (584)
                         .+++.++.+.....          ..   ....+++   +.+.......+........  .+-...+      +++.
T Consensus       191 ---~~~~~~f~~a~~~~----------~~---~~~a~~f---~~fl~l~t~a~~~QD~iLE--Pygg~Vf------gmsv  243 (403)
T PF03209_consen  191 ---ERPRPPFREAWRQV----------WA---SPQARRF---FVFLFLGTLAFFMQDVILE--PYGGEVF------GMSV  243 (403)
T ss_pred             ---CCCCccHHHHHHHH----------Hh---CCChhHH---HHHHHHHHHHHHhhHHHcC--CchhHHc------CCCH
Confidence               00000111110000          00   0011222   2222222221111111111  1111011      1111


Q ss_pred             -CccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCC
Q 007932          365 -PAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQ  443 (584)
Q Consensus       365 -~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (584)
                       ....++..-..+.+++.....+...   +|.       .+.+....|+....+++.......                 
T Consensus       244 ~eTT~Lta~~~~G~L~G~~~~g~~l~---~~~-------~~~~~a~~G~~~~~~~f~lii~a~-----------------  296 (403)
T PF03209_consen  244 GETTRLTAFWGGGTLLGMLLAGFLLS---RRL-------GKKRTAALGCLLGALAFALIILAG-----------------  296 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc---CCC-------CchHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence             2234444445555555544444432   221       233445567766666665544431                 


Q ss_pred             ccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCC
Q 007932          444 IVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGD  523 (584)
Q Consensus       444 ~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~  523 (584)
                       ...+.+.+-...+++|++.+.......+...+..+++..|..+|.+...+.++..++.++.+.+-+....      ..+
T Consensus       297 -~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~------~~~  369 (403)
T PF03209_consen  297 -PLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRA------LFG  369 (403)
T ss_pred             -hcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcc
Confidence             0124556777889999999999999999999999999999999999999999999999999888765531      111


Q ss_pred             CCCccchhHHHHHHHHHHHHHHHHHH
Q 007932          524 NLNDCHLDYYYGFLMVISILNLGAFF  549 (584)
Q Consensus       524 ~~~~~~~~~~f~~~~~~~~~~~l~~~  549 (584)
                      +.....|...|.+-++..++++.+..
T Consensus       370 ~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  370 NSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            11223555567666666666654433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.35  E-value=5.8e-12  Score=136.56  Aligned_cols=176  Identities=12%  Similarity=0.074  Sum_probs=134.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.+|.+.+..++....+++...++|.|+++++|+|..++++......++..++.+++|+++||+ |||+.+++...+..+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~  336 (467)
T PRK09556        258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI  336 (467)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            4577788888888888889999999999999999999999999999999999999999999999 999887765544443


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++.+..                  ..+.....+.+++.|+..............|.+|++      .++++.++.+.
T Consensus       337 ~~~~~~~~~------------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~------~~g~a~gi~~~  392 (467)
T PRK09556        337 IFTLGVYQH------------------ATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKK------AIGVANGIKGT  392 (467)
T ss_pred             HHHHHHHHh------------------cCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchh------hHHHHHHHHHH
Confidence            332222221                  023444556677777554333333335667999987      59999999999


Q ss_pred             HHhH-hHHHHhhhhhhhhc------------ccchhHHHHHHHHHHHHHHHHHH
Q 007932          188 SSFI-GALCATLGLVYIQE------------NLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       188 ~~~~-g~~~g~~~~~~l~~------------~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      ..++ |+.++|.+.|++.+            ..+|+..|++..+..+++.+...
T Consensus       393 ~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        393 FAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            9887 77999999999998            57899999887776666655544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.35  E-value=7.7e-12  Score=131.36  Aligned_cols=171  Identities=18%  Similarity=0.099  Sum_probs=133.4

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      ++++.++......++.....+...++++.|+++++|.+..+.+.......++..++.++.|+++||+ |||+.+.++..+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~  294 (394)
T TIGR00883       216 KHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVL  294 (394)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHH
Confidence            3334567777778888888888899999999889999999999999999999999999999999999 999988765544


Q ss_pred             HHHHH-HHHH-HhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          105 YVLGM-ILLT-MAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       105 ~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      ..+.. .... ...                  ..+.+.+....++.+++.+...+...+++.|.+|++      .|++++
T Consensus       295 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~~~~~  350 (394)
T TIGR00883       295 AALLAVPLLMALLD------------------SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTE------VRYTGA  350 (394)
T ss_pred             HHHHHHHHHHHHhc------------------CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcc------ceeeEe
Confidence            44332 2222 211                  123555667777888888888899999999999987      589999


Q ss_pred             eee-hhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHH
Q 007932          183 NWW-MFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGL  220 (584)
Q Consensus       183 ~~~-~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~  220 (584)
                      +.. +.+..+|..++|.+++++.++.| |+..++...+..
T Consensus       351 ~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       351 SLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            984 45567889899999999999888 887766555433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.35  E-value=7.8e-12  Score=132.53  Aligned_cols=173  Identities=12%  Similarity=0.057  Sum_probs=136.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 007932           37 EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAA  116 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~  116 (584)
                      ..+..+++..+..+++.|+.+ .|.+  +.+.....+.++..++.++.|++.||+ ||||.+.++.++..++.+++... 
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~-  299 (399)
T PRK05122        225 LALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLA-  299 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHh-
Confidence            334455666677788888764 4653  445666778888889999999999998 99999998888888777666654 


Q ss_pred             hccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHH
Q 007932          117 SLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCA  196 (584)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  196 (584)
                                         ++.+.+.+.+++.|++.+...+.......|.+|++      +|+++.++++...++|..++
T Consensus       300 -------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~  354 (399)
T PRK05122        300 -------------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQ------NRGAALGAYSVFLDLSLGIT  354 (399)
T ss_pred             -------------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHH
Confidence                               34556777888899999988888888888888877      59999999999999999999


Q ss_pred             hhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCC
Q 007932          197 TLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIR  239 (584)
Q Consensus       197 ~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (584)
                      +.+.|++.+..||+..|++.++..+++.+..+...++.+++.|
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T PRK05122        355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRAVP  397 (399)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence            9999999998999999998888777776666665554444433

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.34  E-value=1.3e-11  Score=129.27  Aligned_cols=171  Identities=13%  Similarity=-0.016  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      .+.+....++...........++.|+++++|.++.+.+++.+...+...++.+++|++.||+ |||+++.++.+...++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~  279 (375)
T TIGR00899       201 TRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFY  279 (375)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHH
Confidence            33333444444444455566778899889999999999888877777788889999999999 99999988876655554


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      ......                    ++.+.+.+.+++.|++.|...+....+..|..|++       ++++.++++...
T Consensus       280 ~~~~~~--------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  332 (375)
T TIGR00899       280 TGLAAD--------------------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTG  332 (375)
T ss_pred             HHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHH
Confidence            444333                    34556677788888888888888888888988754       568999999999


Q ss_pred             hHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          190 FIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      ++|..++|.+.+++.+..||+..|++.++..+++.+...
T Consensus       333 ~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       333 RVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999989999999988877666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.33  E-value=3.2e-12  Score=134.42  Aligned_cols=195  Identities=12%  Similarity=0.030  Sum_probs=150.9

Q ss_pred             CCCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccch
Q 007932           16 GRPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTS-QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGR   94 (584)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr   94 (584)
                      +...++..+.+||.+++.....+...+.++.+.+..-+|+++ +.+.+.+..|+++++..++..+..+..|+...|. |.
T Consensus        22 ~~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~  100 (488)
T KOG2325|consen   22 SLSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GS  100 (488)
T ss_pred             ccccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CC
Confidence            344555667899999999999999999988888888889875 5788889999999999999999999999999998 75


Q ss_pred             -hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChh
Q 007932           95 -FWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPY  173 (584)
Q Consensus        95 -k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~  173 (584)
                       |+-++.+.++.++|.++.......|+               ...+.++++|++.|+|.|.. +..-+++++....++  
T Consensus       101 ~k~Pli~s~ii~~~g~llY~~l~~~~~---------------~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d--  162 (488)
T KOG2325|consen  101 VKKPLIVSFLIAIIGNLLYLALAYVPN---------------GVKYLMLVARILTGVGVGNF-AVLRAYIADASTVED--  162 (488)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHhccc---------------chHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc--
Confidence             88899999999999999955544332               36788999999999998875 455677788666663  


Q ss_pred             hhcccceeeeeehhHHhHhHHHHhhhhhhhhc----c---------cchhHHHHHHHHHHHHHHHHHHHhCCc
Q 007932          174 ERNLKVSFFNWWMFSSFIGALCATLGLVYIQE----N---------LGWGLGYGIPTAGLLFSLVIFYIGSPI  233 (584)
Q Consensus       174 ~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~----~---------~~~~~~f~~~~~~~~~~~~~~~~~~~~  233 (584)
                          |.++++....+..+|..+||.+...+..    .         +-+..+-|+.+++.++..++++...++
T Consensus       163 ----R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  163 ----RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             ----hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence                8888888777777777777776654421    1         114456677777766776666655443

>PRK03699 putative transporter; Provisional

Probab=99.33  E-value=1.4e-11  Score=130.60  Aligned_cols=172  Identities=12%  Similarity=0.073  Sum_probs=135.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.++...+..++.....+++..++|.|+++.+|+|+.+.+...+.+.++..++.+++|+++||+ |||+.+.....+..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~  283 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV  283 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence            4456666666666777788889999999999999999999999999999999999999999998 999998887766665


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..+....                    ++...+.+..++.|++.+...+...+...|..|.+       +++..++...
T Consensus       284 ~~~~~~~~--------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~  336 (394)
T PRK03699        284 LMYLFVNT--------------------DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILT  336 (394)
T ss_pred             HHHHHHHc--------------------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHH
Confidence            54444433                    23344555667778887777787777777776644       4556777788


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIF  227 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~  227 (584)
                      ..++|..++|.+.|++.+..|++..++..++..+++.+..
T Consensus       337 ~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        337 CGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            8899999999999999999999999887777665554443

>PRK09952 shikimate transporter; Provisional

Probab=99.32  E-value=1.8e-11  Score=131.67  Aligned_cols=182  Identities=17%  Similarity=0.088  Sum_probs=130.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +++.........++....+|...++.+.|+++.+|.+......+.........++.++.|+++||+ ||||+++++.++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~~~  326 (438)
T PRK09952        248 HPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGALIG  326 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHH
Confidence            334444444556677888899999999999999999887665555566677788889999999998 9999998887665


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.+.+.....                .......+.+..++.+++.+...+..+++++|.+|.+      .|+++.++.
T Consensus       327 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~------~r~tg~g~~  384 (438)
T PRK09952        327 TLSAFPFFMALE----------------AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGAS------YRYSGAGVG  384 (438)
T ss_pred             HHHHHHHHHHHH----------------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcc------hhHHHHhHH
Confidence            554433333210                0022334445556667887877888899999999987      588888875


Q ss_pred             hhH-HhHhHHHHhhhhhhhhccc--chhHHHHHHHHHHHHHHHHHHHh
Q 007932          186 MFS-SFIGALCATLGLVYIQENL--GWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       186 ~~~-~~~g~~~g~~~~~~l~~~~--~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      +.. ..+|+.++|.+.+++.+..  +|..++.+.++..+++.+..+..
T Consensus       385 ~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        385 YQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence            444 4589999999999997743  48888877777666666555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.31  E-value=2.4e-11  Score=125.30  Aligned_cols=173  Identities=18%  Similarity=0.236  Sum_probs=151.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhH-HHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFW-TFTLSSLIYV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~-~~~~~~~~~~  106 (584)
                      |.++......+...........+.+.|..+.+|.+..+.+.......++..++.++.|++.||+ |||+ .+.++.++..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~  253 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAA  253 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Confidence            3445556667777777788888888898888899999999999999999999999999999999 9999 9999999888


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.+.+...                    .+.+.+.+..++.|++.+...+...+++.|.+|++      +|++.++..+
T Consensus       254 i~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  307 (352)
T cd06174         254 LGLLLLALA--------------------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPE------ARGTASGLFN  307 (352)
T ss_pred             HHHHHHHHh--------------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH------HHHHHHHHHH
Confidence            888877765                    34667888899999999999999999999999987      5999999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIF  227 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~  227 (584)
                      ...++|..+++.+.+.+.+..+|+..|.+.++..+++.+..
T Consensus       308 ~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         308 TFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence            99999999999999999988999999998888766665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.30  E-value=7.6e-11  Score=128.73  Aligned_cols=149  Identities=16%  Similarity=0.105  Sum_probs=116.2

Q ss_pred             HHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007932           46 GIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTC  125 (584)
Q Consensus        46 ~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (584)
                      ....++|.|+++++|.+..+.+++.+...++..++.+++|+++||+ |||++++++.++..++.++.....         
T Consensus       293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~---------  362 (496)
T PRK03893        293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIG---------  362 (496)
T ss_pred             hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhcc---------
Confidence            4567889999889999999999999999999999999999999998 999998888766555544333321         


Q ss_pred             CCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhc
Q 007932          126 TNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE  205 (584)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  205 (584)
                               ..+.+.+.+..++.+.......+..++++.|.+|++      +|++.+++++...++|..+||.++|++.+
T Consensus       363 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        363 ---------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             ---------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence                     123333444444444333334567778889999987      59999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHH
Q 007932          206 NLGWGLGYGIPTAG  219 (584)
Q Consensus       206 ~~~~~~~f~~~~~~  219 (584)
                      .+||+..+.+.+..
T Consensus       428 ~~g~~~~~~~~~~~  441 (496)
T PRK03893        428 RLDLGTALASLSFS  441 (496)
T ss_pred             cCChHHHHHHHHHH
Confidence            99998877655443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.29  E-value=4.4e-11  Score=126.95  Aligned_cols=166  Identities=14%  Similarity=0.074  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCchh---hhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932           37 EAFERMAFYGIQSNLVNYLTSQLHEDTV---SSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLT  113 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~  113 (584)
                      .+........+.+..+.|..+..+....   ..+.+.....++..++.+..|+++||+ |||+.+.++.++..++.+++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~  306 (408)
T PRK09874        228 TLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMS  306 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHH
Confidence            3444445555667777887765442221   234555666778888899999999999 999999998887777766655


Q ss_pred             HhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhH
Q 007932          114 MAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGA  193 (584)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~  193 (584)
                      ..                    .+.+.+.+.+++.|++.+...+...+.+.+..|++      ++++.+++++...++|.
T Consensus       307 ~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~  360 (408)
T PRK09874        307 FV--------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGN  360 (408)
T ss_pred             Hh--------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHH
Confidence            44                    34566778888999999999999999988888877      58999999999999999


Q ss_pred             HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          194 LCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       194 ~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      .+||.++|++.+..||+..|++.++..+++.+..+.
T Consensus       361 ~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        361 VTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888877766655544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.29  E-value=2.3e-11  Score=136.78  Aligned_cols=134  Identities=10%  Similarity=-0.007  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHH
Q 007932           69 NVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYII  148 (584)
Q Consensus        69 ~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (584)
                      ...+..++..++.+++|+++||+ |||++++++.++.+++.+++++..                    +...+++.+++.
T Consensus       600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~--------------------s~~~ll~~~~l~  658 (742)
T TIGR01299       600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGN--------------------SESAMIALLCLF  658 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHc--------------------cHHHHHHHHHHH
Confidence            34556688889999999999998 999999999999888888777652                    344566777788


Q ss_pred             HHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          149 AIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       149 gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      ++..++..+...++++|++|++      .|++++++.+...++|+++||++++.+... +...+|++.++..+++.++.+
T Consensus       659 g~~~~~~~~~~~a~~aEl~Pt~------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~  731 (742)
T TIGR01299       659 GGLSIAAWNALDVLTVELYPSD------KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL  731 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence            8887888888999999999988      699999999999999999999999988764 456677777766666555544


Q ss_pred             Hh
Q 007932          229 IG  230 (584)
Q Consensus       229 ~~  230 (584)
                      +.
T Consensus       732 ~L  733 (742)
T TIGR01299       732 KL  733 (742)
T ss_pred             hC
Confidence            43

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.28  E-value=3.7e-11  Score=128.35  Aligned_cols=172  Identities=15%  Similarity=0.061  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQL---HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.+..........+.......+.|+.+.+   +.+..+.+.+.+...++..++.+++|+++||+ |||+.+.++.++..+
T Consensus       226 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~  304 (420)
T PRK09528        226 WFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAV  304 (420)
T ss_pred             EeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHH
Confidence            33333333444444444455677765543   56667788899989999999999999999999 999999999888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee-eh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW-WM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~  186 (584)
                      +.++++++                    .+.+.+++.+++.+++.+...+....++.|.+|++      .+++..+. ++
T Consensus       305 ~~~l~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~a~~~~~~~~  358 (420)
T PRK09528        305 RIIGSGFA--------------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVR------LSATIYLVGFQ  358 (420)
T ss_pred             HHHHHHhc--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------ceeeeeeehHH
Confidence            87777765                    34666778888999888887777788899999877      47777665 67


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +..++|.+++|.+.|++.+.+||+..|.+.++..++..++.+.
T Consensus       359 ~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~  401 (420)
T PRK09528        359 FAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF  401 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999877765555444443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.28  E-value=5.2e-11  Score=125.62  Aligned_cols=169  Identities=7%  Similarity=-0.148  Sum_probs=143.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.++......++...+++...++.+.|+++ +|.++.+.+...+...++..+..++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~  282 (382)
T TIGR00902       205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG  282 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence            556777777788888888889999999965 899999999999998999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh-
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM-  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-  186 (584)
                      ..++++..                    ++.+.+++..++.|+..+...+....++.+. |++      +++++.+.++ 
T Consensus       283 ~~~~~~~~--------------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~------~~~~~q~~~~~  335 (382)
T TIGR00902       283 RWAIIGAI--------------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS------EIAKLQALYNA  335 (382)
T ss_pred             HHHHHHhH--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh------hHHHHHHHHHH
Confidence            98888765                    4577888899999999999999999999987 766      4788888875 


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~  226 (584)
                      ....+|..+|+.++|++.++.|+ ..|++.++..+++.++
T Consensus       336 ~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       336 LAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            46789999999999999999886 5677666665555443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.26  E-value=3.6e-11  Score=128.40  Aligned_cols=179  Identities=11%  Similarity=0.035  Sum_probs=136.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc--------hhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED--------TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLS  101 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  101 (584)
                      ++.++...++..........+.+.|+.+ .|.+        ....+...+...+...++.++.|+++||+ |||++++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~  287 (418)
T TIGR00889       210 MAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLS  287 (418)
T ss_pred             eeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHH
Confidence            3445555555555555556777788754 4544        35668888888999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      .++..++..++.....                +..+.+.+++..++.|++.+...+....++.|.+|++      +|+++
T Consensus       288 ~~~~~v~~~l~~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~  345 (418)
T TIGR00889       288 LVAWALRFGFFAYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASA  345 (418)
T ss_pred             HHHHHHHHHHHHHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHH
Confidence            9988887766665310                0012456777889999999988899899999999988      59999


Q ss_pred             eeeeh-hHHhHhHHHHhhhhhhhhcc------cchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          182 FNWWM-FSSFIGALCATLGLVYIQEN------LGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       182 ~~~~~-~~~~~g~~~g~~~~~~l~~~------~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      +++.+ ....+|..+||.++|++.++      +||+..|.+.++..++..+..+...+
T Consensus       346 ~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       346 QGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99997 56789999999999999886      46999998887775555555544443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.26  E-value=1e-10  Score=123.86  Aligned_cols=176  Identities=13%  Similarity=0.026  Sum_probs=136.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..+.+....++..++++++..++|.|+.+ .|.+..+.+...+.+.++..++.++.|++.||+ |||+.+.++..+..+
T Consensus       205 ~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~  282 (393)
T PRK09705        205 PRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLV  282 (393)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHH
Confidence            445666666667778888999999999975 799999999999999999999999999999998 999999988877777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++....                   .+....  ..++.|++.+...|.......+.+++++     .+++.++..+.
T Consensus       283 ~~~~~~~~~-------------------~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~  336 (393)
T PRK09705        283 GFCGFIWLP-------------------LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQG  336 (393)
T ss_pred             HHHHHHHcc-------------------chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHH
Confidence            765544321                   111112  2245678888888877777778886543     58999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHhC
Q 007932          188 SSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      ..++++.++|.+.|++.+..| |...|++.++..++..++.....
T Consensus       337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999876 77888877766665555544443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.26  E-value=1.1e-10  Score=123.33  Aligned_cols=174  Identities=12%  Similarity=-0.061  Sum_probs=133.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      ++......++.....++..++.+.|+.+..|.+..+.+++.....++..++.++.|+++||+ |||++. ++..+..++.
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~  284 (390)
T PRK03545        207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL  284 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence            44444555555666666777888888888999999999999999999999999999999998 988654 4444444443


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      .+.....                   .+.+.+.+..++.|++.+...+..++.+.+..|+       .|++++++++...
T Consensus       285 ~~l~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~  338 (390)
T PRK03545        285 LLLLPAA-------------------NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIF  338 (390)
T ss_pred             HHHHHHh-------------------chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHH
Confidence            3332221                   3455667777788888877777777888887663       3789999999999


Q ss_pred             hHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007932          190 FIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      ++|..+||.++|++.+++|++..|++.+.+.+++.+..+...
T Consensus       339 ~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        339 NIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999988887777766655543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.25  E-value=1.1e-11  Score=109.89  Aligned_cols=133  Identities=15%  Similarity=0.180  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHH
Q 007932           70 VNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIA  149 (584)
Q Consensus        70 ~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  149 (584)
                      .+.+.++..++.++.|+++||+ |||+.+..+..+..++.+++...                    .+.+.+.+.+++.|
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g   62 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALS--------------------SNITVLIIARFLQG   62 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHh--------------------ccHHHHHHHHHHHH
Confidence            4456778889999999999999 99999999998888887777665                    34667888899999


Q ss_pred             HhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          150 IGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       150 i~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ++.+...+...+++.|.+|++      +|++..++.+...++|..++|.+.+++.+..+|++.|++.+...++..+..+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (141)
T TIGR00880        63 FGAAFALVAGAALIADIYPPE------ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF  136 (141)
T ss_pred             HHHHHHHHhHHHHHHHHCChh------hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999988      59999999999999999999999999998889999998877765555554444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.24  E-value=5.9e-11  Score=128.12  Aligned_cols=177  Identities=14%  Similarity=0.123  Sum_probs=124.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccch--hHHH-HHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGR--FWTF-TLSSLI  104 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--k~~~-~~~~~~  104 (584)
                      +.+|...+..++.....++...++|.|++++.|++..+++.....+.++..++.+++|+++||+ ++  |+.. +....+
T Consensus       253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~-~~~r~~~~~~~~~~l  331 (452)
T PRK11273        253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTL  331 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCcchHHHHHHHH
Confidence            5567777777788888888999999999998999999999888888899999999999999997 54  3322 222223


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.+.+....                  ..+.....++.++.|.+..........+..|.+|++      .|++++++
T Consensus       332 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~  387 (452)
T PRK11273        332 VTIATIVYWLNP------------------AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGF  387 (452)
T ss_pred             HHHHHHHHHHhc------------------ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChh------hhhhHHHH
Confidence            333333222211                  022333344444455443332233345567999987      59999999


Q ss_pred             ehhHHhHhHHH-HhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          185 WMFSSFIGALC-ATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       185 ~~~~~~~g~~~-g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      .+...++|+.+ +|.+.|++.+..||+..|++.+...+++.+....
T Consensus       388 ~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        388 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            99988898765 7999999999999999998877766666555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.24  E-value=3.9e-11  Score=128.09  Aligned_cols=162  Identities=11%  Similarity=-0.052  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 007932           44 FYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKP  123 (584)
Q Consensus        44 ~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (584)
                      .+++..++|.|+++.+|.++.+.+++.+...++..++.++.|++.||. ++++.+..+.++..++.+++...        
T Consensus       239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~--------  309 (417)
T PRK10489        239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLM--------  309 (417)
T ss_pred             HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHcc--------
Confidence            456677889999888999999999999999999999999999999997 88888888887777776666543        


Q ss_pred             CCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhh
Q 007932          124 TCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYI  203 (584)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  203 (584)
                                  ++.+...++.++.|++.+...+...+++.|.+|++      .|++++++++...++|..+||.+.|++
T Consensus       310 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~l~G~l  371 (417)
T PRK10489        310 ------------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE------MLGRINGLWTAQNVTGDAIGAALLGGL  371 (417)
T ss_pred             ------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence                        34555677778888888877777888899999977      599999999999999999999999999


Q ss_pred             hcccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          204 QENLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       204 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      .+..|++..+.+.++..++..++.....+
T Consensus       372 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        372 GAMMTPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence            99989888888777665554444444333

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.23  E-value=9.7e-11  Score=122.74  Aligned_cols=177  Identities=11%  Similarity=-0.018  Sum_probs=130.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHH-HHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWT-FTLSSLIYV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~-~~~~~~~~~  106 (584)
                      +.++..+...++.....+.+..+.+.|+++.+|.+..+.+++.....++..++.+++|+++||+ |||+. +........
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~  293 (399)
T TIGR00893       215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI  293 (399)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence            5567777788888888888999999999999999999999999999999999999999999998 98861 111111111


Q ss_pred             HHH---HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          107 LGM---ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       107 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      ++.   .+......                ...+.........+.+.+.+ ..+...+++.|.+|++      .|+++++
T Consensus       294 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~g~~~~  350 (399)
T TIGR00893       294 IAGLVLSLLMFATN----------------YVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGN------IAGLTGG  350 (399)
T ss_pred             HHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChh------HHHHHHH
Confidence            111   11111110                00123333333333344444 7889999999999988      5999999


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +.+...++|..++|.+.+++.+..| |+..|.+.++..+++.+..+
T Consensus       351 ~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       351 LINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888 99998887776666555443

>PRK12382 putative transporter; Provisional

Probab=99.23  E-value=6.9e-11  Score=125.02  Aligned_cols=163  Identities=12%  Similarity=0.119  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 007932           37 EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAA  116 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~  116 (584)
                      .......+..+..+.+.|+++ .+.+.  .+.....+.++..+++++.|++.||+ ||||.+.++..+..++.++.... 
T Consensus       225 ~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~-  299 (392)
T PRK12382        225 LALQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLA-  299 (392)
T ss_pred             HHHHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHc-
Confidence            334445566667777888764 46543  45566667778889999999999998 99999999988888887766554 


Q ss_pred             hccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHH
Q 007932          117 SLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCA  196 (584)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  196 (584)
                                         ++.+.+.+..++.|++.+...+...+.+.|.+|++      +|+++.++++...++|..++
T Consensus       300 -------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig  354 (392)
T PRK12382        300 -------------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVS  354 (392)
T ss_pred             -------------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHH
Confidence                               34556677888889999888888888889999877      59999999999999999999


Q ss_pred             hhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          197 TLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       197 ~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      |.+.+++.++.||+..|.+.+...+++.+..+.
T Consensus       355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        355 GPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999888776666655443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.22  E-value=1.7e-10  Score=122.53  Aligned_cols=170  Identities=10%  Similarity=-0.069  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI  110 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~  110 (584)
                      +.+....++.....+.+..+.|.|+.+ .|.+..+.+.+...+.++..++.++.|+++||+ |||+.+.++.+...++.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~  300 (406)
T PRK11551        223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence            334444455556677777888888865 699999999999999999999999999999998 999998887666666655


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      ++...                    .+.+.+.+..++.|++.+...+...++..|.+|++      .|++..++.+....
T Consensus       301 ~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~  354 (406)
T PRK11551        301 ALAAA--------------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQ------VRGTGVGAAVAVGR  354 (406)
T ss_pred             HHHhc--------------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchh------hhhhhhhHHHHhhh
Confidence            44443                    23444556667778877777888889999999988      59999999999999


Q ss_pred             HhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHH
Q 007932          191 IGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +|..++|.+.|++.+..+ |...++......+++.+..+
T Consensus       355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999987644 55555555544444444433

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.22  E-value=5.2e-10  Score=122.55  Aligned_cols=203  Identities=17%  Similarity=0.190  Sum_probs=154.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      ..|.+.++.....+.+....++.....+-+.+.++++..+.|++.+.+-++..+...+..+.+-|. -|-|.+-+|++++
T Consensus        94 ~~k~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m  172 (735)
T KOG3626|consen   94 NIKMFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLM  172 (735)
T ss_pred             CcchHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHH
Confidence            335566666666666666668888888889999999999999999999999999999999999998 8888999999999


Q ss_pred             HHHHHHHHHhhhccc-------------cCC--------------CCCCC--CcC--CCCcchHH-HHHHHHHHHHHhcc
Q 007932          106 VLGMILLTMAASLKF-------------MKP--------------TCTNG--ICS--KTSTSQIA-FFYSSLYIIAIGAG  153 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~-------------~~~--------------~~~~~--~~~--~~~~~~~~-~~~~~~~~~gi~~g  153 (584)
                      +++.++.++-..+..             ..+              .|...  .|.  ..+...++ +++++.++.|+|..
T Consensus       173 ~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~T  252 (735)
T KOG3626|consen  173 GLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGAT  252 (735)
T ss_pred             HHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCC
Confidence            999998876531110             000              01100  111  12222233 78899999999999


Q ss_pred             cccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc------------------cc-hhHHHH
Q 007932          154 GTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN------------------LG-WGLGYG  214 (584)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------------------~~-~~~~f~  214 (584)
                      ..++...+++=|....+      .....+++.+.+..+|.++|.++++++...                  .| |+..|+
T Consensus       253 pi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFL  326 (735)
T KOG3626|consen  253 PIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFL  326 (735)
T ss_pred             CCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHH
Confidence            99999999999988877      478899999999999999999999887431                  12 778888


Q ss_pred             HHHHHHHHHHHHHHHhCCcee
Q 007932          215 IPTAGLLFSLVIFYIGSPIYR  235 (584)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~  235 (584)
                      +.+.+.++..+.++.+++.++
T Consensus       327 i~g~~~~~~a~p~f~fPk~lp  347 (735)
T KOG3626|consen  327 ICGALLLFSAVPLFFFPKELP  347 (735)
T ss_pred             HHHHHHHHHHHHHHhCcccCc
Confidence            888887777777777665543

>TIGR00897 2A0118 polyol permease family

Probab=99.20  E-value=2.8e-10  Score=120.87  Aligned_cols=177  Identities=12%  Similarity=-0.037  Sum_probs=130.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHH-HHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFT-LSSLIYV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~-~~~~~~~  106 (584)
                      |.++...+..++....+++...+.|.|++ ++|.+..+.+.+.+...++..++.++.|+++||+ |||+.+. .+.+...
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~  299 (402)
T TIGR00897       222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG  299 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence            44566667777778888899999999985 5899999999998999999999999999999998 9988764 3333333


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.+.+......               ...+.+...+..++.|++.+...+. .+.+.|..| +      +|+++.++.+
T Consensus       300 ~~~~~l~~~~~~---------------~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~------~~g~~~g~~~  356 (402)
T TIGR00897       300 IFTLALYYIPQH---------------FGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-K------HKGAAMSVLN  356 (402)
T ss_pred             HHHHHHHHHHHc---------------cCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-c------hhHHHHHHHH
Confidence            333333222100               0123455666777778777765443 455666544 3      4899999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ...++|..++|.+.+.+.+.+||...|++.++..+++.+..++
T Consensus       357 ~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       357 LSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888776666555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.20  E-value=1.8e-10  Score=123.70  Aligned_cols=153  Identities=12%  Similarity=0.035  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH-HH
Q 007932           34 VGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI-LL  112 (584)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~-~~  112 (584)
                      +...++....++.+..+.|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||++++++.++..+... ..
T Consensus       244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~  322 (434)
T PRK15075        244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL  322 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            4444556677888889999999988999999988888888899999999999999999 999998876544332221 11


Q ss_pred             HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh-H
Q 007932          113 TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF-I  191 (584)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~  191 (584)
                      .....                 .++.....+..++.+++.+...+....+..|.+|++      .|++++++.+...+ +
T Consensus       323 ~~~~~-----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~------~rg~~~g~~~~~~~~~  379 (434)
T PRK15075        323 SWLVA-----------------APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAE------VRTAGFSLAYSLATAI  379 (434)
T ss_pred             HHHHc-----------------CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCC------ccchheeHHHHHHHHH
Confidence            11110                 022223334444556666666666778889999988      59999998654444 4


Q ss_pred             hHHHHhhhhhhhhcccchh
Q 007932          192 GALCATLGLVYIQENLGWG  210 (584)
Q Consensus       192 g~~~g~~~~~~l~~~~~~~  210 (584)
                      ++.++|.+.+++.+..|++
T Consensus       380 ~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        380 FGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HhhhHHHHHHHHHHhcCCc
Confidence            5778999999999988854

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.20  E-value=3.7e-09  Score=108.66  Aligned_cols=132  Identities=14%  Similarity=0.035  Sum_probs=103.8

Q ss_pred             HHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcC
Q 007932           52 VNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICS  131 (584)
Q Consensus        52 ~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (584)
                      ..|..+.+| +...+-|..-+|.+.+....+.+-|+.||+ |=|...+++..+-.+|..+=..+. .|+++         
T Consensus        68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss-~p~v~---------  135 (480)
T KOG2563|consen   68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISS-LPFVP---------  135 (480)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhcc-Ccccc---------
Confidence            346666667 666667888899999999999999999999 999999999999999987776653 34433         


Q ss_pred             CCCcchHH--HHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhc
Q 007932          132 KTSTSQIA--FFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE  205 (584)
Q Consensus       132 ~~~~~~~~--~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  205 (584)
                          +.++  ..+.+-.+.+.+.-......+-+.+-+|++.      +|+.+...-.++..+|.++|.++...+..
T Consensus       136 ----~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~------qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  136 ----PLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPD------QRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             ----ccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcc------hhhhhhhHHHhcchHHHHHHhhccceecC
Confidence                2233  6667777777777777777677778899988      59999999888888999888777766654

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.19  E-value=1.2e-10  Score=123.00  Aligned_cols=160  Identities=16%  Similarity=0.100  Sum_probs=125.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      ...+.....+.....+....+++.|+.+++|++..+.+++.+...++..++.++.|+++||+ |||+.+.++.+...+..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~  318 (405)
T TIGR00891       240 FVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLI  318 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHH
Confidence            33344444555566667778889999999999999999999999999999999999999998 99999988876553332


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      .......                   .+.+.+.++.++.++..+...+..+.++.|.+|++      .|++++++.+...
T Consensus       319 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~  373 (405)
T TIGR00891       319 IPVFAIG-------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLG  373 (405)
T ss_pred             HHHHHhC-------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHH
Confidence            2222111                   33455666666777777777788889999999988      5999999999999


Q ss_pred             hHhHHHHhhhhhhhhcccc-hhHHHHH
Q 007932          190 FIGALCATLGLVYIQENLG-WGLGYGI  215 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~~~-~~~~f~~  215 (584)
                      ++|..++|.+.|++.++.| |+..+..
T Consensus       374 ~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       374 NLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHHHHHHHHHHHHhccccchhHHh
Confidence            9999999999999999888 7765553

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.19  E-value=3.5e-10  Score=122.94  Aligned_cols=174  Identities=8%  Similarity=-0.034  Sum_probs=114.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhH-----HHH--HH
Q 007932           29 ACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFW-----TFT--LS  101 (584)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~-----~~~--~~  101 (584)
                      ..|.+.+..+......+.+..++|.|+.+++|++..+++.....+.++..++.+++|+++||+ |||+     ..+  +.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~  331 (476)
T PLN00028        253 RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIV  331 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHH
Confidence            345555555555555667778889999888999999999999999999999999999999998 8762     222  22


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      .++..++.++....                    .+.+...+..++.+++.+...+...++..+..| +      .++..
T Consensus       332 ~~l~~i~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~------~~g~~  384 (476)
T PLN00028        332 QTLGGVFCIWLGRA--------------------NSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-R------SLGVI  384 (476)
T ss_pred             HHHHHHHHHHhccc--------------------chHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-h------hchhh
Confidence            22222222222211                    223334444455555554444555555666554 3      38899


Q ss_pred             eeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007932          182 FNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       182 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      .++.+...++|+.+++.+.+ .....+|+..|++.+++.+++.++.++.+
T Consensus       385 ~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        385 SGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             hhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            99887777777777766543 22334699999988877777766665543

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.18  E-value=9.7e-11  Score=126.53  Aligned_cols=172  Identities=10%  Similarity=-0.022  Sum_probs=136.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc-cchhHHHHHHH--HH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY-IGRFWTFTLSS--LI  104 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~-~Grk~~~~~~~--~~  104 (584)
                      +.++..+...++..++++....+++.|+++ +|.+..+.+.+.+...++..++.+++|+++||. .++|+..+++.  ++
T Consensus       241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  319 (455)
T TIGR00892       241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF  319 (455)
T ss_pred             chHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence            456666777777888888888899999864 799999999999999999999999999999983 14454444433  33


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      ..++.+++...                    .+.+.+++.+++.|++.+...++..+++.|.+|++      ++++.+++
T Consensus       320 ~~l~~ll~~~~--------------------~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~g~  373 (455)
T TIGR00892       320 NGLTHLLCALA--------------------GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAVGL  373 (455)
T ss_pred             HHHHHHHHHHh--------------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHHhH
Confidence            33333333333                    34666788899999999999999999999999987      58999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHHHH
Q 007932          185 WMFSSFIGALCATLGLVYIQENL-GWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~  226 (584)
                      ++...++|..+||.++|++.+.. +|+..|++.++..+++.+.
T Consensus       374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            99999999999999999998877 4999999888766555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.18  E-value=1.9e-10  Score=117.45  Aligned_cols=185  Identities=15%  Similarity=0.039  Sum_probs=149.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      .+..|.+.+..+...-++.++..+++.|+.++++.++.+++.....+.+...+..+.+|+|+||+ |.+|+.++....++
T Consensus       217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~  295 (417)
T COG2223         217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA  295 (417)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999 99999999888888


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++..+.....+  .          +. ...+...+++..+.+++..|.-+.....++...+|.+       -+.+.++..
T Consensus       296 ~~~~~l~~~~~--~----------~~-~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vg  355 (417)
T COG2223         296 LAAALLSLFLT--G----------FG-HGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVG  355 (417)
T ss_pred             HHHHHHHcccc--c----------cc-cCcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHH
Confidence            88877776531  0          00 0133444555455555555655666677788888765       688899999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          187 FSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      ...++|+..-|...+...+..| +...|++.....+++.+..+..+.
T Consensus       356 a~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         356 AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988999999888887 888999888887777776665544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.18  E-value=4.2e-10  Score=116.05  Aligned_cols=179  Identities=14%  Similarity=0.088  Sum_probs=149.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +.+.++......++...+.|+..+++.+++++.-|+|....+++...|.++..++..++|+++||  +.|+++....++.
T Consensus       209 ~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~  286 (394)
T COG2814         209 RRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLL  286 (394)
T ss_pred             cCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHH
Confidence            44667888888999999999999999999999999999999999999999999999999999999  6888888887777


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      ++..+.+.+..                   .+.+...+..++.|+..+......+.-.++..|+.       +..+.+++
T Consensus       287 a~~~l~l~~~~-------------------~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~-------~~~a~sl~  340 (394)
T COG2814         287 ALALLALTFTG-------------------ASPALALALLFLWGFAFSPALQGLQTRLARLAPDA-------ADLAGSLN  340 (394)
T ss_pred             HHHHHHHHHhc-------------------chHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCc-------hHHHHHHH
Confidence            77777766653                   44556666666677777766666666667744444       79999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      ....|+|..+|..++|.+.+++|+....+..++..+++++......+
T Consensus       341 ~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~  387 (394)
T COG2814         341 VAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR  387 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999998888888777665443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.16  E-value=3.8e-10  Score=118.97  Aligned_cols=158  Identities=13%  Similarity=0.136  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007932           41 RMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKF  120 (584)
Q Consensus        41 ~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~  120 (584)
                      ...+.....++|.|+++ .|.++.+.+...+...++..++.++.|+++||+ |||+++..+.++..++..... .     
T Consensus       213 ~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~-----  284 (381)
T PRK03633        213 GIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S-----  284 (381)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-----
Confidence            33444455678888865 699999999999999999999999999999999 999999888777776654332 1     


Q ss_pred             cCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhh
Q 007932          121 MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGL  200 (584)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  200 (584)
                                       ........++.|++.+...|...+.+.|..|++      +++...+.+....++|..+||.++
T Consensus       285 -----------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~lG~~igp~~~  341 (381)
T PRK03633        285 -----------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHH------ELVAMNQALLLSYTVGSLLGPSFT  341 (381)
T ss_pred             -----------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             112344566777777777888889889988876      356667777788899999999999


Q ss_pred             hhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          201 VYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       201 ~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      |++.++.+|++.|.+.+...++..+..+.
T Consensus       342 G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        342 AMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999877766655444333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.15  E-value=5.2e-10  Score=120.45  Aligned_cols=184  Identities=16%  Similarity=0.120  Sum_probs=153.1

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchh--HHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRF--WTFTLSSL  103 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk--~~~~~~~~  103 (584)
                      +.|.+...++..++.+-+...+......|.++++|++..+...+.....+...++++++|++.||+ |.|  ++++++++
T Consensus       279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~  357 (477)
T PF11700_consen  279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI  357 (477)
T ss_pred             hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence            447778888888999999999999999999999999999999999999999999999999999998 999  88888877


Q ss_pred             HHHHHHHHHHH--hhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          104 IYVLGMILLTM--AASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       104 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      ++.+..+...+  ..+  .            ..-.+.+.+++.-++.|+..|..++..-++.+++.|++      +.+.+
T Consensus       358 ~~~~i~~~g~~G~~~~--~------------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g------~e~ef  417 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPS--F------------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG------REAEF  417 (477)
T ss_pred             HHHHHHHHHHHHhhhc--c------------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc------hhhHH
Confidence            66443333222  110  0            00145677888888999999999999999999999998      58999


Q ss_pred             eeeehhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHh
Q 007932          182 FNWWMFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       182 ~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      ++++.......+.+||++.+.+.+..| -|..+....+..++++++++..
T Consensus       418 Fgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  418 FGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999988776 7888887777777777666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.14  E-value=4.7e-10  Score=120.45  Aligned_cols=178  Identities=13%  Similarity=0.028  Sum_probs=121.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccch--hHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGR--FWTFTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Gr--k~~~~~~~~~~  105 (584)
                      +.++.+.+..++....++++.+++|.|+.+++|++..+++...+.+.++..++.+++|+++||+.+|  ++......+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~  322 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI  322 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence            3456666666667777778888999999888999999999999999999999999999999997222  22222222221


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++...+....   .               .+.....+..+..|++.............|.+|++      .|++..++.
T Consensus       323 ~~~~~~~~~~~---~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~  378 (434)
T PRK11663        323 LLSVGSLWLMP---F---------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKE------AAGAATGFV  378 (434)
T ss_pred             HHHHHHHHHcc---c---------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHh------hHHhHHHHH
Confidence            22211111111   0               11222233333344433222223345667888876      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ++..++|..++|.+.+++.+..||+..|++.+++.+++.+..+.
T Consensus       379 ~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        379 GLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888776665554443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.13  E-value=7.8e-10  Score=118.92  Aligned_cols=178  Identities=13%  Similarity=0.106  Sum_probs=121.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.+|......++.....+++..++|.|+++..|+++.++++....+.++..++.+++|+++||+ |+++....+..+..+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  329 (438)
T TIGR00712       251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL  329 (438)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence            4466666677777777888999999999988999999999999999999999999999999998 765433334322222


Q ss_pred             HHH--HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          108 GMI--LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       108 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      ..+  ++....  +               ..+.+...+..++.|.+.............|.+|++      .|+++.++.
T Consensus       330 ~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~  386 (438)
T TIGR00712       330 VTIAVIVYWMN--P---------------AGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGFT  386 (438)
T ss_pred             HHHHHHHHHhc--C---------------CCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChh------heeeehhhh
Confidence            111  111110  0               012233333344445443322222234567888887      599999999


Q ss_pred             hhHHhHhH-HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGA-LCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       186 ~~~~~~g~-~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      +...++|+ .++|.+.|.+.++.||...|++.....+++.+....
T Consensus       387 ~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  431 (438)
T TIGR00712       387 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  431 (438)
T ss_pred             chHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            98888875 689999999999889999988776655555444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.11  E-value=5.5e-10  Score=120.34  Aligned_cols=179  Identities=13%  Similarity=0.035  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932           34 VGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLT  113 (584)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~  113 (584)
                      ++..+......+.+..+.+ +..+++|++..+.++......++..++.+++|+++||+ |||+.+.+++++.+++.+++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~  367 (481)
T TIGR00879       290 VLQWFQQFTGINAIMYYSP-TIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLG  367 (481)
T ss_pred             HHHHHHHHhCCeehHHHHH-HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence            3333333333334444444 44567899988888888889999999999999999998 999999999888887776666


Q ss_pred             HhhhccccCCCCCCCCcCCCC-cchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHh
Q 007932          114 MAASLKFMKPTCTNGICSKTS-TSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIG  192 (584)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  192 (584)
                      .......          ...+ ..+...+....++.+.......+....++.|.+|++      .|+++.++.+...++|
T Consensus       368 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~lg  431 (481)
T TIGR00879       368 ILGASFV----------TGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLS------LRPKGISIAVAANWLA  431 (481)
T ss_pred             HHhhccc----------CCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChH------HHHHHHHHHHHHHHHH
Confidence            3211000          0000 002222222222222222233466777789999987      5999999999999999


Q ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          193 ALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       193 ~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      .+++|.+.+++.++.+|++.|++.++..+++.++.+..
T Consensus       432 ~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~  469 (481)
T TIGR00879       432 NFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFF  469 (481)
T ss_pred             HHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhee
Confidence            99999999999988899999988877766665555443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.11  E-value=9.5e-10  Score=118.02  Aligned_cols=176  Identities=10%  Similarity=-0.053  Sum_probs=113.5

Q ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHH
Q 007932           30 CAFLVGY-EAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLG  108 (584)
Q Consensus        30 ~~~~~~~-~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~  108 (584)
                      .+..... .......+|++.+++|.|+.+++|.+..+.+...+...++..++.++.|+++||+ |||++++++.++.++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~  322 (432)
T PRK10406        244 AFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALF  322 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence            3443333 3344778899999999999989999998988888888888888899999999998 9999887776544333


Q ss_pred             HHHHHH-hhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          109 MILLTM-AASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       109 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      ...... ...                 ..+.........+.....+...+..+.+.+|.+|++      .|+++.++.+.
T Consensus       323 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~------~r~t~~g~~~~  379 (432)
T PRK10406        323 TVPILSALQN-----------------VSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQ------VRALGVGLSYA  379 (432)
T ss_pred             HHHHHHHHHc-----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------ccchhhhHHHH
Confidence            322221 110                 011221111122222333333455677889999998      59999999887


Q ss_pred             HHhH-hHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          188 SSFI-GALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       188 ~~~~-g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ..++ ++...|.+.+++.....|...+++.++..+++.+..+.
T Consensus       380 ~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        380 VANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            6654 34457777776644323555666555555555554444

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.10  E-value=1e-11  Score=135.46  Aligned_cols=198  Identities=16%  Similarity=0.150  Sum_probs=3.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007932           32 FLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMIL  111 (584)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~  111 (584)
                      +......+.++..+++......-++++++++..++|++.+.+-++..+..++..++++|. .|-|.+-+|.+++++|.++
T Consensus         6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l   84 (539)
T PF03137_consen    6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLL   84 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHH
Confidence            333333334477788888888888999999999999999999999999999999999997 7888888999999999988


Q ss_pred             HHHhhhccccCC-------CCCC----CCc-------------------CCCCcchHHHHHHHHHHHHHhcccccccccc
Q 007932          112 LTMAASLKFMKP-------TCTN----GIC-------------------SKTSTSQIAFFYSSLYIIAIGAGGTKPNIST  161 (584)
Q Consensus       112 ~~~~~~~~~~~~-------~~~~----~~~-------------------~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~  161 (584)
                      +++-+-+..-++       .+.+    ..|                   +........+++++.++.|+|....++...+
T Consensus        85 ~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~t  164 (539)
T PF03137_consen   85 FALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGIT  164 (539)
T ss_dssp             -------------------------------------------------------------------SSS----------
T ss_pred             HhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceee
Confidence            886542221110       0000    012                   1112234578999999999999999999999


Q ss_pred             cccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc---------------------cc-hhHHHHHHHHH
Q 007932          162 FGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN---------------------LG-WGLGYGIPTAG  219 (584)
Q Consensus       162 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------------------~~-~~~~f~~~~~~  219 (584)
                      ++=|..++++      -+...++.+.+..+|.++|.++++.+...                     .| |+..|.+.+++
T Consensus       165 YiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~  238 (539)
T PF03137_consen  165 YIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL  238 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            9999999884      78899999999999999998888876421                     22 77778777777


Q ss_pred             HHHHHHHHHHhCCceee
Q 007932          220 LLFSLVIFYIGSPIYRH  236 (584)
Q Consensus       220 ~~~~~~~~~~~~~~~~~  236 (584)
                      .++..+-++.++++++.
T Consensus       239 ~~l~aipl~~FPk~lp~  255 (539)
T PF03137_consen  239 LFLSAIPLFFFPKKLPG  255 (539)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHcCCccCCC
Confidence            66666555555554443

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.10  E-value=1.5e-09  Score=118.27  Aligned_cols=179  Identities=9%  Similarity=0.037  Sum_probs=127.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHH-HHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVN-NWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLG  108 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~  108 (584)
                      .+......++.....+....+.++|+.+++|++..+.+.... ...++..++.+++|+++||+ ||||.+.++.++.+++
T Consensus       224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~  302 (491)
T PRK11010        224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS  302 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            343444445555666666777888988889999999999875 55678999999999999999 9999887766655554


Q ss_pred             HHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhH
Q 007932          109 MILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFS  188 (584)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (584)
                      .+.+.....                ..++...+.+..++..+..|...+...++..+..+++      .+++.+++.+..
T Consensus       303 ~l~~~~l~~----------------~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~------~~~t~~gl~~s~  360 (491)
T PRK11010        303 NAGYWLLSI----------------TDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS------FSATQFALLSAL  360 (491)
T ss_pred             HHHHHHHHh----------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CcHHHHHHHHHH
Confidence            433322110                0123333444445544444444455677788888877      478888999999


Q ss_pred             HhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhC
Q 007932          189 SFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       189 ~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      .++|..+++.+.|++.+.+||+..|.+.++..+.+.+.....+
T Consensus       361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998989999999999999999988887777766665543

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.08  E-value=1.4e-09  Score=114.62  Aligned_cols=166  Identities=7%  Similarity=-0.110  Sum_probs=129.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.++......++....+....++.+.|++ +.|.+..+.+...+...++..+..++.|++.||+ |+|+.+.++.+...+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~  282 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV  282 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence            45566666666667777777788889985 5899999999998888888889999999999999 999999999888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh-
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM-  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-  186 (584)
                      +.+++...                    ++.+.+++..++.|++.+...+....++.+. +++      ++++..+.+. 
T Consensus       283 ~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~  335 (382)
T PRK11128        283 RWGLMGST--------------------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGS------EVIRLQALYSA  335 (382)
T ss_pred             HHHHHHhh--------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHh------hhHHHHHHHHH
Confidence            77666654                    4567788889999999998888888888776 433      3577777665 


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFS  223 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~  223 (584)
                      ....+|..+||.++|++.+..|+. .|+..++..+++
T Consensus       336 ~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~~~~~~~~  371 (382)
T PRK11128        336 LAMGGSIAIMTVLSGFLYQHLGAG-VFWVMALVALPA  371 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHH
Confidence            455678899999999999988874 555555544443

>TIGR01272 gluP glucose/galactose transporter

Probab=99.06  E-value=2.1e-09  Score=110.01  Aligned_cols=162  Identities=12%  Similarity=0.037  Sum_probs=124.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQ--LHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +..++.++..++....-.++..+.+.|+.+.  +|+++.+.+...+.+..+..+++++++++.||+ |+||++.++.++.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence            4455555555555555667788899999754  799999999999999999999999999999998 9999998888777


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.++.....                    ... ...+.++.|++.+..+|...+...+.+|++.       +++.++.
T Consensus       219 ~~~~~l~~~~~--------------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~  270 (310)
T TIGR01272       219 VLLSIGAALTH--------------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL  270 (310)
T ss_pred             HHHHHHHHHcC--------------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH
Confidence            77665444331                    111 2235557899999999999999999888753       3334443


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAG  219 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~  219 (584)
                       .+..+|+.++|.+.|.+.+..|.+..|++..+.
T Consensus       271 -~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       271 -CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             -HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence             566799999999999999988988888755543

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.06  E-value=2.6e-09  Score=113.60  Aligned_cols=173  Identities=12%  Similarity=-0.068  Sum_probs=128.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.++.......+.....+......|.|+.+++|.++.+.++......++..++.++.|+++||+ |||+.+.++.++..+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~  293 (406)
T PRK15402        215 RRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVA  293 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3455555555555666666667778888888999999988887777788889999999999999 999999999888877


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..+........               ..+.+.+.++.++.|++.+...+..........| +      ++++..+.+++
T Consensus       294 g~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~------~~g~~~~~~~~  351 (406)
T PRK15402        294 GLLLAALATVIS---------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-V------SKGTVSAAMGM  351 (406)
T ss_pred             HHHHHHHHHHcc---------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-c------cccHHHHHHHH
Confidence            777766542110               1234556777788888888877666555544333 4      48999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFS  223 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~  223 (584)
                      ...+|..+|+.+.+++.+..++....+..++..++.
T Consensus       352 ~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        352 LSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             HHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            999999999999999988777665544444443333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.05  E-value=2.4e-09  Score=113.43  Aligned_cols=172  Identities=12%  Similarity=0.059  Sum_probs=128.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---CCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQL---HEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      |.++..+...++....+.....+.+.|+.+.+   +.+....+.+.+...+...++.++.|++.||+ |||+.+.++.++
T Consensus       215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l  293 (396)
T TIGR00882       215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTI  293 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Confidence            34455555555555555556566788887665   45566778888888888889999999999999 999999999888


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      .+++..+....                    .+.+.++...++.|++..........+..+..+++      .+++..+.
T Consensus       294 ~~l~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~at~~~~  347 (396)
T TIGR00882       294 MSVRIIGSSFA--------------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVR------LSATIYLI  347 (396)
T ss_pred             HHHHHHHHHhc--------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc------eEEEeehH
Confidence            88877665554                    34666777888888887665555555666666665      36666655


Q ss_pred             -ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 007932          185 -WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       185 -~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~  226 (584)
                       ++....+|..+++.++|++.+..||+.+|.+.++..++..++
T Consensus       348 ~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       348 GFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence             567889999999999999999999999999887765555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.05  E-value=1.5e-08  Score=108.51  Aligned_cols=161  Identities=14%  Similarity=0.076  Sum_probs=114.3

Q ss_pred             HHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc--cc--hhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007932           51 LVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY--IG--RFWTFTLSSLIYVLGMILLTMAASLKFMKPTCT  126 (584)
Q Consensus        51 ~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~--~G--rk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (584)
                      ...|+++++|+++++.....+...+-. ..-++.|.++|.+  .|  ||+=++++.++.+++...++....         
T Consensus        12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---------   81 (433)
T PF03092_consen   12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---------   81 (433)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---------
Confidence            345789999999999887666555444 4567779999995  34  444555566666555555554321         


Q ss_pred             CCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc
Q 007932          127 NGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN  206 (584)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  206 (584)
                             ...+.....+..++..+|........-+++.|....+..    .++...++.+....+|..++..+.|.+.+.
T Consensus        82 -------~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~----~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~  150 (433)
T PF03092_consen   82 -------SESSAAIAVVLLFLASFGYAFADVAADALVVELARREPE----SRGDLQSFVWGVRSVGSLVGSLLSGPLLDS  150 (433)
T ss_pred             -------ccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCc----hhHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence                   112344555666777888888889999999998865532    367788888889999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          207 LGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       207 ~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      .+++..|.+.+....+..+......+
T Consensus       151 ~~~~~~f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  151 FGPQGVFLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             CCCeEEehHHHHHHHHHHHHHHHhhh
Confidence            99999998887665555444444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.05  E-value=1.3e-08  Score=108.62  Aligned_cols=361  Identities=15%  Similarity=0.096  Sum_probs=206.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh-hhhhHHHHH----HHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           33 LVGYEAFERMAFYGIQSNLVNYLTSQLHEDTV-SSVRNVNNW----SGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~-~~~~~~~~~----~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.+...+.....+........+.....+.+.. ..+......    .+...+.+++.|.++||+ |||..+.+.+....+
T Consensus        26 ~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~~l  104 (463)
T KOG2816|consen   26 LLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGTIL  104 (463)
T ss_pred             HHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHHHH
Confidence            33334444444444445555565555544332 233334444    577788899999999999 999999999988888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHH--hcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAI--GAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi--~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      ..+.+.+..                     .| +++   +.++  +.+...+...++++|...++      .|....++.
T Consensus       105 ~~~~~~~~~---------------------~~-~~~---~~~l~g~~~~~~s~~~a~vadis~~~------~R~~~~gll  153 (463)
T KOG2816|consen  105 PALCLLFQG---------------------YW-FFL---LLGLSGGFSAIFSVGFAYVADISSEE------ERSSSIGLL  153 (463)
T ss_pred             hHHHHHHHH---------------------HH-Hhh---hcccccchhhhhhhhhhheeeccchh------HHHHHHHHH
Confidence            877777651                     22 222   3332  33456678888999999888      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCC
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPD  265 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (584)
                      +.....+..++|..++.+.+..|.-..|.+..+..++..+......|+...++.+++.+                     
T Consensus       154 ~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~---------------------  212 (463)
T KOG2816|consen  154 SGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDAT---------------------  212 (463)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccccccc---------------------
Confidence            99999999999999999999999999999988887777666555444322211111000                     


Q ss_pred             CCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHH-HHHHHhhhhhhhhcccc
Q 007932          266 NPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMA-LIWLVTLIPSTIWAQIN  344 (584)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  344 (584)
                          ..        ........+....+              ..+...  ....+|..+..+ ..++....-+.......
T Consensus       213 ----~~--------~~~~~~~~~~~~~~--------------~~~~~~--~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~  264 (463)
T KOG2816|consen  213 ----LR--------ELTPGSLDSSHVAD--------------AFQSLT--KVGPDRLLLLLLLVAFLSSLPEAGGASDVL  264 (463)
T ss_pred             ----cc--------ccCCCcccchhhhh--------------hhhhhc--ccCCCccchHHHHHHHHHHHHHhcCceeEE
Confidence                00        00000000000000              000000  011222222211 11111111111111011


Q ss_pred             ceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 007932          345 TLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYA  424 (584)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~  424 (584)
                      .++.......+...   +..-....+....+..++..+..       .+..       ...+.+..|+....+...+.++
T Consensus       265 ~~yl~~~f~w~~~~---~s~~~~~~~~~~~i~~l~~~~~l-------~~~l-------~~~~~i~lGl~~~~~~~~~~af  327 (463)
T KOG2816|consen  265 LLYLKAKFGWNKKE---FSDLLSLVSILGIISQLLLLPLL-------SSIL-------GEKRLISLGLLSEFLQLLLFAF  327 (463)
T ss_pred             EEEEeeecCcCHHH---HHHHHHHHHHHHHHHHHHHHHHH-------HHHH-------hhhhHhhHHHHHHHHHHHHHHH
Confidence            22222211111110   00000111122222333332222       1111       1123578899999999988888


Q ss_pred             HHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHH
Q 007932          425 VEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFL  504 (584)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l  504 (584)
                      +.                      -.|++..............|...+++...+.++.+|++.++......+.+.+++.+
T Consensus       328 ~~----------------------~~w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~  385 (463)
T KOG2816|consen  328 AT----------------------ETWMMFAAGVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPAL  385 (463)
T ss_pred             hc----------------------cchhhhHHHHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHH
Confidence            72                      22444455556666677889999999999999999999999999999999999999


Q ss_pred             HHHhhhhhc
Q 007932          505 VTLVDKVTG  513 (584)
Q Consensus       505 ~~~i~~~~~  513 (584)
                      ...+.....
T Consensus       386 ~~~i~~~t~  394 (463)
T KOG2816|consen  386 YGNIFALTL  394 (463)
T ss_pred             HHHHHHHHH
Confidence            988876554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.04  E-value=6.3e-10  Score=116.16  Aligned_cols=162  Identities=13%  Similarity=0.146  Sum_probs=119.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH--HH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL--IY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~--~~  105 (584)
                      +.++.+.+..++.....+++..+.+.|+.+.+|.+..+.+...+...++..++.++.|+++||+.+||+..+....  ..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~  295 (379)
T TIGR00881       216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI  295 (379)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            4566677777777777888889999999999999999999999999999999999999999986234433322211  11


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.......   +               ..+.....+..++.|.......+....+..|.+|++      .|+++.++.
T Consensus       296 ~~~~~~~~~~---~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~  351 (379)
T TIGR00881       296 IVSLLVYWLN---P---------------AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKK------AAGTAAGFV  351 (379)
T ss_pred             HHHHHHHhcC---c---------------chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcc------hhHHHHHHH
Confidence            1111111111   0               123344555556667665555666677889999987      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGY  213 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f  213 (584)
                      +...++|..++|.+.|.+.+.+||+..|
T Consensus       352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       352 GFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             HHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            9999999999999999999999998754

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.03  E-value=7.1e-09  Score=106.10  Aligned_cols=129  Identities=14%  Similarity=0.003  Sum_probs=91.5

Q ss_pred             HHHHHHHHhhhhcCC---ch----hhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHH-HHHHHHHHHHHHHHHhhhc
Q 007932           47 IQSNLVNYLTSQLHE---DT----VSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFT-LSSLIYVLGMILLTMAASL  118 (584)
Q Consensus        47 ~~~~~~~yl~~~l~~---~~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~-~~~~~~~~~~~~~~~~~~~  118 (584)
                      ...++|+|+++..+.   ++    +-.+...++..+...+..|+-|.++|+. |+||-.+ ....+-.++...+.+..  
T Consensus        34 tt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~-g~Rk~~~~~f~~i~i~~~~~L~~i~--  110 (438)
T COG2270          34 TTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYP-GPRKKFFGFFTAIGIISTFLLWFIP--  110 (438)
T ss_pred             eeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccC-CCcchHHHHHHHHHHHHHHHHHHhC--
Confidence            356678888876554   43    3456667778888888899999999999 8665544 44455555666666653  


Q ss_pred             cccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhh
Q 007932          119 KFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATL  198 (584)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  198 (584)
                                     ++.+++...+..++..++.......-.+++.+..++++      .++..+.-+....+|+.+.-+
T Consensus       111 ---------------~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li  169 (438)
T COG2270         111 ---------------PGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLI  169 (438)
T ss_pred             ---------------CCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHH
Confidence                           11345566666667789999988999999999998873      677777766777777776644


Q ss_pred             h
Q 007932          199 G  199 (584)
Q Consensus       199 ~  199 (584)
                      .
T Consensus       170 ~  170 (438)
T COG2270         170 F  170 (438)
T ss_pred             H
Confidence            3

>PRK10504 putative transporter; Provisional

Probab=99.03  E-value=2.8e-09  Score=115.61  Aligned_cols=158  Identities=9%  Similarity=-0.053  Sum_probs=124.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.....+...++.+.++.......|.|++..+|.++.+.++......++..++.++.|++.||+ |||+++.++.++.++
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~  339 (471)
T PRK10504        261 RTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLAL  339 (471)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4455566666677777666666778888888999999999998888888888889999999999 999999999887777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++.....                 ..+.+.+.+..++.|++.+...+..+.+..+.+|++      .++.+++++++
T Consensus       340 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~  396 (471)
T PRK10504        340 VSLLFMLVAL-----------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLLSM  396 (471)
T ss_pred             HHHHHHhccc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHHHH
Confidence            7666554320                 122333445566778888888888889999999987      48999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccch
Q 007932          188 SSFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~  209 (584)
                      ...+|..+|+.+++.+.+..++
T Consensus       397 ~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        397 IMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999988765554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.02  E-value=4.2e-09  Score=111.07  Aligned_cols=172  Identities=9%  Similarity=-0.020  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      .+......++...+.+....+.++|+.+..|.++.+.+...+...++..++.++.|++.||+ |+|+.+.++..+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~  279 (382)
T PRK10091        201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL  279 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence            44444444455555566667778888888999999999999999999999999999999998 99999998888777776


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      ++.....                   .+.+...+..++.+++.+...+.......+..++++     .++...  .+...
T Consensus       280 ~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~  333 (382)
T PRK10091        280 LMLFFFG-------------------GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE-----LLGAAG--GQIAF  333 (382)
T ss_pred             HHHHHHH-------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch-----HHHHHH--HHHHH
Confidence            5554322                   223344445555556554444433333333333221     244432  35677


Q ss_pred             hHhHHHHhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHHH
Q 007932          190 FIGALCATLGLVYIQEN-LGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~-~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      ++|..+||.++|++.+. .+|+..+.+.++..++......
T Consensus       334 ~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (382)
T PRK10091        334 NLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL  373 (382)
T ss_pred             HHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence            89999999999999885 6899998887766555544433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.02  E-value=1.5e-09  Score=112.82  Aligned_cols=155  Identities=12%  Similarity=0.067  Sum_probs=129.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQ-SNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~-~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      +.++..+...+......++.. .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+.++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~  288 (365)
T TIGR00900       210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG  288 (365)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence            445666666666666666666 6777787777999999999999999999999999999999998 99999988877777


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++..+.....                   .+.+.+.+..++.|++.+...+...+++.|.+|++      .|++..++++
T Consensus       289 ~~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~  343 (365)
T TIGR00900       289 LAILVVGLTP-------------------PNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE------LLGRVFGAQF  343 (365)
T ss_pred             HHHHHHHhhc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHH
Confidence            7766665541                   13566778888999999999999999999999987      5999999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccc
Q 007932          187 FSSFIGALCATLGLVYIQENLG  208 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~  208 (584)
                      ...++|..++|.++|++.+.+|
T Consensus       344 ~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       344 SLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999987653

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.01  E-value=3.1e-09  Score=102.27  Aligned_cols=171  Identities=13%  Similarity=0.064  Sum_probs=135.9

Q ss_pred             CCCccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhH
Q 007932           17 RPVLSSKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFW   96 (584)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~   96 (584)
                      .|.....+.....+|++..+..+...+.+-.++.-+.++++++|+|+.+++.+.+.....+.+.+++.|.++||+ ||+-
T Consensus       253 ~pkLtdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~  331 (459)
T KOG4686|consen  253 EPKLTDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNL  331 (459)
T ss_pred             CcccccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-ccee
Confidence            355555667778899998888888888888888888999999999999999999999999999999999999999 9987


Q ss_pred             HHHHHH-HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhh
Q 007932           97 TFTLSS-LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYER  175 (584)
Q Consensus        97 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~  175 (584)
                      ..+.+. +....+..++.++.                      +--+++..++|+..+......+..++-..|++     
T Consensus       332 ~wv~~a~~~tl~~H~~l~Ft~----------------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~-----  384 (459)
T KOG4686|consen  332 WWVASACILTLLGHSGLFFTF----------------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEE-----  384 (459)
T ss_pred             hhHHHHHHHHHHHhhhHHhhh----------------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH-----
Confidence            666553 45555555555542                      22355667778887776666777788888877     


Q ss_pred             cccceeeeeehhHHhHhHHHHhhhhhhhhcccc---hhHHHHHH
Q 007932          176 NLKVSFFNWWMFSSFIGALCATLGLVYIQENLG---WGLGYGIP  216 (584)
Q Consensus       176 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~---~~~~f~~~  216 (584)
                       +.|++++..+...|+|-.+.|++.|.+.+.-|   |--.|.+.
T Consensus       385 -qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~  427 (459)
T KOG4686|consen  385 -QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLI  427 (459)
T ss_pred             -HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHH
Confidence             69999999999999999999999999988654   43344443

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.01  E-value=4.9e-09  Score=112.05  Aligned_cols=148  Identities=15%  Similarity=0.044  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007932           41 RMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKF  120 (584)
Q Consensus        41 ~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~  120 (584)
                      ....+.+..++|.|+++ .|.++.+.+.......++..++.++.|+++||+ |||+.+..+.++..++.++.....+   
T Consensus       244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~---  318 (426)
T PRK12307        244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ---  318 (426)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            33444566788888875 599999999888889999999999999999998 9999999888776665544433210   


Q ss_pred             cCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhh
Q 007932          121 MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGL  200 (584)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  200 (584)
                                     .....+.+..+..+.+..+..+..+.++.|.+|++      .|++++++.+...++|+.++|.+.
T Consensus       319 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~~~~gp~~~  377 (426)
T PRK12307        319 ---------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLE------VRGLGTGLIYNLAATSGTFNSMAA  377 (426)
T ss_pred             ---------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHH------HHhhhhhHHHHHHhHHHHHHHHHH
Confidence                           11221222222222333333456677889999987      599999999999999999999999


Q ss_pred             hhhhcccchhHHHH
Q 007932          201 VYIQENLGWGLGYG  214 (584)
Q Consensus       201 ~~l~~~~~~~~~f~  214 (584)
                      +++.+..|+....+
T Consensus       378 g~l~~~~g~~~~~~  391 (426)
T PRK12307        378 TWLGITMGLGAALT  391 (426)
T ss_pred             HHHHHcccHHHHHH
Confidence            99999888654433

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.00  E-value=1e-09  Score=117.65  Aligned_cols=161  Identities=19%  Similarity=0.112  Sum_probs=123.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.++.+++..++.+.+.+......+.|.+..++ +..+.++......++..++.++.|+++||+ |||+++.++.++.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~  299 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL  299 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            556667777777777777666655556665666 556677777788899999999999999999 999999999888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhh-hcccceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYE-RNLKVSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~  186 (584)
                      +.+++.+..                   .+.+.+.+..++.|++.+...+...++++|..|.++.+. +.+++.++++++
T Consensus       300 ~~~~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  360 (437)
T TIGR00792       300 GYLIFFFAG-------------------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRT  360 (437)
T ss_pred             HHHHHHHcc-------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence            776665531                   234556667778889999888999999999887432111 114688999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccch
Q 007932          187 FSSFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~  209 (584)
                      +...+|..+++.+.+++.+..||
T Consensus       361 ~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       361 FVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999876665

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.00  E-value=3.2e-09  Score=113.24  Aligned_cols=165  Identities=10%  Similarity=-0.050  Sum_probs=116.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHH-HHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTS-QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWT-FTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~-~~~~~~~~  105 (584)
                      +.+|......++....++++.+++|.|+++ ..+.+..+++.......++..++.+++|+++||+ |||+. ..+..++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~  320 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA  320 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence            345667777788888899999999999976 3577888889999999999999999999999998 97775 33443343


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++..+ ....                   .+......+..+.++|.....+.......|.+|++      +|+.+.++.
T Consensus       321 ~~~~~~-~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~a~g~~  374 (412)
T TIGR02332       321 AAGWLL-ASAT-------------------DHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQ------ARAIAIAVI  374 (412)
T ss_pred             HHHHHH-HHhc-------------------CCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchH------HHHHHHHHH
Confidence            333222 2111                   11111222222233333333344445556778877      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAG  219 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~  219 (584)
                      +...++|+.++|.+.+.+.+..| |++.|++.++.
T Consensus       375 ~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       375 NATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            99999999999999999998775 99888766553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.99  E-value=5.9e-09  Score=110.23  Aligned_cols=175  Identities=17%  Similarity=-0.002  Sum_probs=124.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHH-HHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           29 ACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSG-VVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      ..+......++...+.....++.+.|+.+ .|+++.+.+++...... ...++.+++|++.||+ |+||.+.++.++.++
T Consensus       209 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  286 (390)
T TIGR02718       209 LAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGS  286 (390)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            34555555566666667777788888875 79999999998887764 5667789999999999 999999887766533


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      ............              ...+.........+.+++.|...+...+...+..++++     .+++.++..+.
T Consensus       287 ~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~  347 (390)
T TIGR02718       287 LALLWFAQAAFW--------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQS  347 (390)
T ss_pred             HHHHHHHHHHcc--------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHH
Confidence            332222211100              00223333444445566677777777777777776632     58999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSL  224 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~  224 (584)
                      ..++|..+||.++|++.+..||+..|.+.++..+++.
T Consensus       348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~  384 (390)
T TIGR02718       348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI  384 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999989887776555543

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR01272 gluP glucose/galactose transporter

Probab=98.98  E-value=6.7e-09  Score=106.24  Aligned_cols=84  Identities=12%  Similarity=-0.035  Sum_probs=70.5

Q ss_pred             chHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc---------
Q 007932          136 SQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN---------  206 (584)
Q Consensus       136 ~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---------  206 (584)
                      .+...++++.++.|.|.+...+..+.++++..+++      ++++.+++.+....+|..++|++++.+...         
T Consensus         8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~------~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~   81 (310)
T TIGR01272         8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIE------TAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV   81 (310)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            45778999999999999999999999999999887      488999999999999999999999987632         


Q ss_pred             -------cchhHHHHHHHHHHHHHHH
Q 007932          207 -------LGWGLGYGIPTAGLLFSLV  225 (584)
Q Consensus       207 -------~~~~~~f~~~~~~~~~~~~  225 (584)
                             ..|+++|++.+....+..+
T Consensus        82 ~~~~~~~~~~~~~yl~ia~~~~~~~i  107 (310)
T TIGR01272        82 ATANAEAAKVHTPYLLLAGALAVLAI  107 (310)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   3688998866655444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.97  E-value=3.2e-09  Score=116.01  Aligned_cols=154  Identities=8%  Similarity=-0.104  Sum_probs=129.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.........++..+..++...+.|.|+++.+|.|+.+++.......++..++.++.|++.||+ |||+.+..+.++..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~  337 (495)
T PRK14995        259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL  337 (495)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence            4556666777778888888888999999999999999999999999999999999999999999 999999988888887


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +.+++.....                 ..+.+......++.|+|.|...+.....+.+..|++      +++.+.+.+++
T Consensus       338 ~~~~l~~~~~-----------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~------~~g~~~~~~~~  394 (495)
T PRK14995        338 SFYGLAMTDF-----------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE------KAAAAGAIETM  394 (495)
T ss_pred             HHHHHHHhcC-----------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH------hcchHHHHHHH
Confidence            7766654320                 123444566778889999998888888888988887      58999999999


Q ss_pred             HHhHhHHHHhhhhhhhhc
Q 007932          188 SSFIGALCATLGLVYIQE  205 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~  205 (584)
                      ..++|..+|+.+.+.+.+
T Consensus       395 ~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        395 AYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998888754

>PRK10133 L-fucose transporter; Provisional

Probab=98.96  E-value=1.1e-08  Score=109.99  Aligned_cols=165  Identities=12%  Similarity=0.062  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYL-TSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      +...+..++.....++...+.+.|+ ++.+|+++.+.++....+.++..++++++|++.||+ ||||++..+.++..++.
T Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~~  339 (438)
T PRK10133        261 RWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMALC  339 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH
Confidence            3444445555566666677888885 567899999999999999999999999999999998 99999988877766655


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      .+..+.                    .+. .......+.|++.+...|...+...|.+|++       .+.+.++..+ .
T Consensus       340 ~~~~~~--------------------~~~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-------~~~as~l~~~-~  390 (438)
T PRK10133        340 LISAFA--------------------GGH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIVM-T  390 (438)
T ss_pred             HHHHHc--------------------CCh-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-------hccchhHHhH-H
Confidence            444432                    111 1244566789999999999999999998765       3555555543 4


Q ss_pred             hHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHH
Q 007932          190 FIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLV  225 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~  225 (584)
                      .+|+.++|.+.|.+.+..| -+..|+++.+..+....
T Consensus       391 ~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             hccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            4688888899999988887 67888776665444433

>PRK10054 putative transporter; Provisional

Probab=98.94  E-value=7.9e-09  Score=109.55  Aligned_cols=174  Identities=12%  Similarity=0.039  Sum_probs=128.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTS--QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      |.++......++..+.......+.+.|+..  +.+.+....+.+...+........++.|++.||. +||+.+.+++++.
T Consensus       206 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~  284 (395)
T PRK10054        206 KALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCF  284 (395)
T ss_pred             ceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHH
Confidence            445555555666666555555666677643  3455666677777777777777788889999998 9999999998888


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++...+....                   .+.+.+.++.++.++|.+...|...+.+.+..|++      .++++++.+
T Consensus       285 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~~~~~~~~  339 (395)
T PRK10054        285 VIGLVGFIFSG-------------------NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MKASYFSAQ  339 (395)
T ss_pred             HHHHHHHHHcc-------------------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cceehHhHH
Confidence            88876665531                   23555667778889998888888888999999877      588888765


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      + ...+|..+||.++|++.++.|....|++.+....++.++..
T Consensus       340 ~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        340 S-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML  381 (395)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence            4 56689999999999999999988888776655444444433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.94  E-value=3.2e-09  Score=115.41  Aligned_cols=156  Identities=13%  Similarity=0.107  Sum_probs=129.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..+..+...++..+.+++...++|.|+++.+|.++.++++......++..++.++.|++.||+ |||+.+.++.++.++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~  333 (485)
T TIGR00711       255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV  333 (485)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence            4556667777788888888889999999999999999999999999999999999999999998 999999999888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++....+                .+.+.+.+....++.|++.+...+.......+..|++      +++++.++++.
T Consensus       334 ~~~~~~~~~~----------------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~  391 (485)
T TIGR00711       334 GFYWRAFTFT----------------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPH------KIARGSSLSNF  391 (485)
T ss_pred             HHHHHhccCC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHhHHHHHHHH
Confidence            7776653211                0123445666677889999888777777777888877      59999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcc
Q 007932          188 SSFIGALCATLGLVYIQEN  206 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~  206 (584)
                      ..++|+.+|+.+.+.+.++
T Consensus       392 ~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       392 TRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888664

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.94  E-value=1.8e-08  Score=105.84  Aligned_cols=164  Identities=10%  Similarity=0.061  Sum_probs=118.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..+...+...+.....+....+.|.|+++++|.++.+.+.+.....++..++.++.|++.||+ |||+.+.++.++..+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~  284 (385)
T TIGR00710       206 KMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAV  284 (385)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            3445555555566666777777888888889999999999999999999999999999999999 999999988887777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +.+++.......               ......+.+..++.|++.+...+.......|.+|+       +++++.++.+.
T Consensus       285 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~  342 (385)
T TIGR00710       285 SAVLLEITAILG---------------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFGT  342 (385)
T ss_pred             HHHHHHHHHHhc---------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHHH
Confidence            766665542100               02234455566678888888888888888888763       37888888777


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYG  214 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~  214 (584)
                      ....++.+++.+.+.+.+..+|...+.
T Consensus       343 ~~~~~g~i~~~~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       343 LRLVLGAIVGYLVSLIHGNTAWPMSLS  369 (385)
T ss_pred             HHHHHHHHHHHHHHhccccChHHHHHH
Confidence            765544444444555555444444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.93  E-value=1.4e-08  Score=110.71  Aligned_cols=172  Identities=14%  Similarity=0.127  Sum_probs=143.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      +..++...++.++....+...+|.+..+.+|.++...|++.+.+.+|..++.++.+++.+|+ ++++.+..+.++++++.
T Consensus       220 l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~~  298 (524)
T PF05977_consen  220 LRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALAL  298 (524)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHHH
Confidence            33344444444555555566788888899999999999999999999999999999999998 99999999988888888


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSS  189 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  189 (584)
                      +.++++                    ++.+...+..++.|++........++.+.+..|++      .|||.++++++..
T Consensus       299 ~~lal~--------------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~------~~GRv~si~~~~~  352 (524)
T PF05977_consen  299 LLLALS--------------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDW------VRGRVFSIYQMVF  352 (524)
T ss_pred             HHHhcc--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHhHHHHHHHHHH
Confidence            777776                    45777788888899998888888899999999988      5999999999999


Q ss_pred             hHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          190 FIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       190 ~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      ..+..+|..+.|.+.+.+|-+..+.+.++..++..++..
T Consensus       353 ~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  353 FGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888877776555555443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00896 CynX cyanate transporter

Probab=98.93  E-value=8.2e-09  Score=107.59  Aligned_cols=153  Identities=12%  Similarity=0.060  Sum_probs=117.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc-hhHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG-RFWTFTLSSLIYV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-rk~~~~~~~~~~~  106 (584)
                      +..+.......+....++++..++|.|+++ .|.+..+.+...+...++..+++++.|+++||+ + ||+.+.++.++.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~-~~~~~~~~~~~~~~~  274 (355)
T TIGR00896       197 PLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRV-KDQRGIVAVLAVLQL  274 (355)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh-ccchHHHHHHHHHHH
Confidence            445555556666777788888999999875 699999999999999999999999999999998 6 4556677777777


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.+.+....                    +.... ...++.|++.|...|...+.+.+..++++     +++...++.+
T Consensus       275 ~~~~~~~~~~--------------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~  328 (355)
T TIGR00896       275 VGLCGLLFAP--------------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQ  328 (355)
T ss_pred             HHHHHHHHhh--------------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHH
Confidence            7766665542                    11111 13457799999988887777776666543     4788888888


Q ss_pred             hHHhHhHHHHhhhhhhhhcccc
Q 007932          187 FSSFIGALCATLGLVYIQENLG  208 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~  208 (584)
                      ...++|..++|.+.|++.++.|
T Consensus       329 ~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       329 SIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            8888999999999999988765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00895 2A0115 benzoate transport

Probab=98.92  E-value=3.8e-09  Score=111.11  Aligned_cols=148  Identities=14%  Similarity=0.055  Sum_probs=115.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..+.+....++....++....+.| ++.+++|.+..+.+...+...++..++.+++|+++||+ |||+.+....+...+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  327 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVF  327 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHH
Confidence            3444555556667777777777777 66678899999999999999999999999999999999 998555444433333


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +. ++....                   .+.+.+.+..++.|++.+...+...+++.|.+|++      .|+++.++.+.
T Consensus       328 ~~-~~~~~~-------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~  381 (398)
T TIGR00895       328 AV-LVGSTL-------------------FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTA------IRATGVGWAIG  381 (398)
T ss_pred             HH-HHHHHh-------------------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH------HHHHHHHHHHH
Confidence            32 222211                   23555677778889999999999999999999987      59999999999


Q ss_pred             HHhHhHHHHhhhhhhh
Q 007932          188 SSFIGALCATLGLVYI  203 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l  203 (584)
                      ...+|..+||.++|++
T Consensus       382 ~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       382 IGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHhHHhc
Confidence            9999999999999875

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.92  E-value=1.5e-08  Score=109.72  Aligned_cols=177  Identities=11%  Similarity=-0.015  Sum_probs=122.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHH--------
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTF--------   98 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~--------   98 (584)
                      ++.+|...+..++....++...+++|.|+.+.+|++..+.++..+...++..++.+++|+++||+ ++|+..        
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~  338 (465)
T TIGR00894       260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI  338 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence            35678888889999999999999999999999999999999999999999999999999999997 654321        


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccc
Q 007932           99 TLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLK  178 (584)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r  178 (584)
                      ..+......+..++.....                 ..+.....+...+.+.+.+...+.......|..|.       .+
T Consensus       339 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~  394 (465)
T TIGR00894       339 FNGIGGLGPGIFAYALPYL-----------------SAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-------FL  394 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHc-----------------CCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-------HH
Confidence            1111111111111111100                 01223333444444555555555555555566654       38


Q ss_pred             ceeeeeehhHHhHhHHHHhhhhhhhhccc---chhHHHHHHHHHHHHHHHHHH
Q 007932          179 VSFFNWWMFSSFIGALCATLGLVYIQENL---GWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       179 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~---~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +.+.++.+...++|+.++|.+.+++.+..   +|+..|.+.++..+++.++..
T Consensus       395 g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       395 GFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            99999999999999999999999987643   488888887776666654433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.91  E-value=2.6e-08  Score=105.58  Aligned_cols=168  Identities=8%  Similarity=-0.041  Sum_probs=121.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.++......+......++..++.++++.+++|+++.+.+.....+.++..++.++.|++.||. +|+..+....+...+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~  294 (394)
T PRK10213        216 PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVS  294 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence            3455554445555566666666764444567899999999999999999999999999999996 554444433333333


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +.++....                    .+.+.+.+..++.|++.+...+..++.+.+..|++       +++..+.+..
T Consensus       295 ~~~l~~~~--------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  347 (394)
T PRK10213        295 ALVLTLWG--------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVA  347 (394)
T ss_pred             HHHHHHHh--------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHH
Confidence            33333332                    33556777788889999999998898888888744       4566667777


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFS  223 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~  223 (584)
                      ..++|..+|+.++|++.+..|++..+...++..++.
T Consensus       348 ~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        348 VIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            889999999999999999899888888776554333

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.90  E-value=1.9e-08  Score=102.96  Aligned_cols=172  Identities=12%  Similarity=0.107  Sum_probs=143.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.+....+..++.+=+..++.+....|...++|++..+..++.....++..++++++|+|.||+ |.|+++.++++++.+
T Consensus       252 ~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~~  330 (438)
T COG2270         252 KNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILSI  330 (438)
T ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHHH
Confidence            5677778888888888899999999999999999999999999999999999999999999998 999999999988777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      ..+.....                    .....+.+.-.+.|...|..++..-++.++.+|++      +-+++++++..
T Consensus       331 ~~~~~~~~--------------------~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~------k~~~fFglyal  384 (438)
T COG2270         331 AALYLIFL--------------------EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKG------KEGRFFGLYAL  384 (438)
T ss_pred             HHHHHHHc--------------------cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc------cccceeehhhh
Confidence            76555543                    12334666667889999999999999999999998      57999999999


Q ss_pred             HHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~  226 (584)
                      .......+||...+.+.+..| -|..+....+...++++.
T Consensus       385 tgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         385 TGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            999999999999999887655 455555544444444444

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.88  E-value=2.2e-08  Score=108.74  Aligned_cols=161  Identities=12%  Similarity=0.052  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007932           46 GIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTC  125 (584)
Q Consensus        46 ~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (584)
                      .+..+.|.+ .++.|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.+++.......      
T Consensus       289 ~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~------  360 (479)
T PRK10077        289 VVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQ------  360 (479)
T ss_pred             HHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcC------
Confidence            333344443 456888877777777778888899999999999999 999999999998888887776542100      


Q ss_pred             CCCCcCCCCcchHHHHHHHHHHHHHhccc-ccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhh--
Q 007932          126 TNGICSKTSTSQIAFFYSSLYIIAIGAGG-TKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVY--  202 (584)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~gi~~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~--  202 (584)
                               .... ....+.++.+.+.+. ..|...+++.|.+|++      .|++++++.+...++|..+++.+.+.  
T Consensus       361 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        361 ---------APGI-VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             ---------cccH-HHHHHHHHHHHHHhccccchhHHHhHhhCChh------HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence                     0111 222333444444433 3477789999999987      59999999999999999888655543  


Q ss_pred             ----hhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          203 ----IQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       203 ----l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                          +.+..+|++.|++.++..+++.+..+..
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             hccchhhhccCccHHHHHHHHHHHHHHHHHhc
Confidence                4456788888888776655555554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.86  E-value=3.9e-08  Score=104.90  Aligned_cols=187  Identities=11%  Similarity=0.019  Sum_probs=126.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..|.+.+..++..-++.+...++|.|+++.+.  ............+...+.++++|+|+||+ |+||+++++.+...+
T Consensus       252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i  328 (462)
T PRK15034        252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI  328 (462)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence            457888887777777777777789999877653  33333334456788889999999999999 999999999887777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCC-C--------------h
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDF-N--------------P  172 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~-~--------------~  172 (584)
                      +..+.....  |.            ....+.+.+.+..+...++.|.-......++.+.||++ .              .
T Consensus       329 ~~~~~~l~l--p~------------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~  394 (462)
T PRK15034        329 FSALLFLTL--PG------------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR  394 (462)
T ss_pred             HHHHHHHHh--cc------------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence            664433331  11            01134566666655555666666666677777777641 0              0


Q ss_pred             hhhcccceeeeeehhHHhHhHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHHHHHHHhC
Q 007932          173 YERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL-GWGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       173 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      ..+++-+.+.|+......+|+.+.|.+.+...+.. ++...|+...+..+++.++.++.+
T Consensus       395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            11113566777878888888888887777766554 477888887777777766666654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.86  E-value=2.9e-08  Score=119.66  Aligned_cols=165  Identities=13%  Similarity=-0.011  Sum_probs=131.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh-hhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTV-SSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      +.++..++..++.....+.+..+++.|+.+.+|++.. +.+++.+...++..++.++.|+++||+ ++++++.++.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~  310 (1146)
T PRK08633        232 RVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLA  310 (1146)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHH
Confidence            4455555555566666667778889999999999998 999999999999999999999999998 99999988888777


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++.+++.+.                    .+.+.+++..++.|++.+...+...+++.+.+|++      .|++++++.+
T Consensus       311 ~~~~~~~~~--------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~rg~~~~~~~  364 (1146)
T PRK08633        311 LSLFLLPTA--------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEK------ELGKVLAANN  364 (1146)
T ss_pred             HHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCcc------chhhhhHHHH
Confidence            777666654                    34566777788889999988888999999999988      5999999999


Q ss_pred             hHHhHhHHHHhhhhhhhhc-ccchhHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQE-NLGWGLGYGIPTAG  219 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~-~~~~~~~f~~~~~~  219 (584)
                      +..++|.++++.+++.+.. .+++...|++.+..
T Consensus       365 ~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~  398 (1146)
T PRK08633        365 FLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV  398 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            9999999888877776644 23455555544443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.86  E-value=3.6e-08  Score=105.67  Aligned_cols=162  Identities=17%  Similarity=0.095  Sum_probs=134.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |..+.++...++.+.+.....+..+.|.+..+|.+ ...+.......+...++.++.++++||+ |+||++..+.++.++
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL  302 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence            66777788888888888877778888888888877 5567777788999999999999999999 999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhh-hcccceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYE-RNLKVSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~  186 (584)
                      +.++..+...                  .+.+.+++..++.|++.+...+...++++|..+.++.+. +.+.+..++.+.
T Consensus       303 ~~~~~~~~~~------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~  364 (428)
T PF13347_consen  303 GFLLLFFLGP------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS  364 (428)
T ss_pred             HHHHHHHHHh------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence            9888877631                  467888899999999999999999999999998654221 124588889999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccch
Q 007932          187 FSSFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~  209 (584)
                      +...+|..+++.+.+.+.+..|+
T Consensus       365 ~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  365 FFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999988888654443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.85  E-value=1.6e-08  Score=110.65  Aligned_cols=168  Identities=14%  Similarity=0.135  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhh------------HHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHH
Q 007932           35 GYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVR------------NVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSS  102 (584)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~  102 (584)
                      ...+...+.+|++..+.|.+++ +.|++..+.+.            ......++..++.++.++++||+ |||++++++.
T Consensus       295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~  372 (502)
T TIGR00887       295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF  372 (502)
T ss_pred             HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence            3344556678888888888875 56876543221            12233345556778889999999 9999999888


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      ++.+++..++....+..               ..+. .+...-+....+.....+....+.+|.+|++      .|+++.
T Consensus       373 ~~~~~~~~~l~~~~~~~---------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~------~R~~~~  430 (502)
T TIGR00887       373 FILTVLFFVLGFAYNHL---------------STHG-FLAIYVLAQFFANFGPNATTFIVPGEVFPTR------YRSTAH  430 (502)
T ss_pred             HHHHHHHHHHHHHHHhc---------------chhH-HHHHHHHHHHHHhcCCCchhhhhhhccCchh------HHHHHH
Confidence            77777666555432100               0111 1111111112222233456677789999998      599999


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhcc----------cchhHHHHHHHHHHHHHHHH
Q 007932          183 NWWMFSSFIGALCATLGLVYIQEN----------LGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~~----------~~~~~~f~~~~~~~~~~~~~  226 (584)
                      ++.+....+|++++|.+.+++.+.          .++...|++.++..+++.++
T Consensus       431 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999998773          23445666666555555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.85  E-value=2.6e-08  Score=105.81  Aligned_cols=173  Identities=10%  Similarity=0.049  Sum_probs=114.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHH-HHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWS-GVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLG  108 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~  108 (584)
                      .+..+...++..........+.+.|+.+++|+++.+.+++..... ++..++.+++|++.||+ |||+.+.++.++..+.
T Consensus       211 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~  289 (402)
T PRK11902        211 AWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVS  289 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence            333333334433333323334455677789999999998876654 45788899999999999 9999888777666555


Q ss_pred             HHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHH----HHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          109 MILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSL----YIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      .+.+......                ..+.+.+.+..    +..|++.+...+....++.+.+|.++      +    +.
T Consensus       290 ~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~----~~  343 (402)
T PRK11902        290 NLGYWVLAVT----------------PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ------Y----AL  343 (402)
T ss_pred             HHHHHHHHhc----------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH------H----HH
Confidence            4433221100                02234344433    34566677777888888888887552      3    44


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ++...++|..+++.++|++.+..||+..|.+.+++.+++.+..+.
T Consensus       344 ~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        344 LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            444556777767778999999999999999888776666555433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.83  E-value=4.8e-08  Score=103.72  Aligned_cols=154  Identities=13%  Similarity=0.043  Sum_probs=110.8

Q ss_pred             HHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 007932           46 GIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTC  125 (584)
Q Consensus        46 ~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (584)
                      ....++|.|+++..+ ++.+.+++.+...++......+.+++.||..+.++.+..+.++..++..++...          
T Consensus       226 ~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~----------  294 (400)
T PRK11646        226 QVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV----------  294 (400)
T ss_pred             HHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh----------
Confidence            345677888876655 667888887777666665555556666553276777778877777777666654          


Q ss_pred             CCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhc
Q 007932          126 TNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE  205 (584)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  205 (584)
                                ++.+.+.+..++.+++.+...|..++++.|..|++      +|++++++++...++|..+||.++|++.+
T Consensus       295 ----------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        295 ----------SNLQQLFTLICLFYIGSIIAEPARETLSASLADAR------ARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             ----------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc------cchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence                      23455666667788888888889999999999987      59999999999999999999999999987


Q ss_pred             cc---c-hhHHHHHHHHHHHHHHHH
Q 007932          206 NL---G-WGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       206 ~~---~-~~~~f~~~~~~~~~~~~~  226 (584)
                      ..   + ....++..++..++..+.
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        359 LGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HHhhcCCcchHHHHHHHHHHHHHHH
Confidence            63   2 244555444444444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.81  E-value=4.7e-08  Score=117.74  Aligned_cols=182  Identities=11%  Similarity=-0.077  Sum_probs=134.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.++..++..++.++..+++.+++|.|+++.+|.++.+.+++.+.+.++..++.++.|+++|++ ++++.+..+.++.++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~  303 (1140)
T PRK06814        225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL  303 (1140)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence            5567777777777777788888999999999999999999999999999999999999999988 777766666655555


Q ss_pred             HHHHHHHhhhc--c-ccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          108 GMILLTMAASL--K-FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       108 ~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      +.+.+.+....  . ...-.+  ..+. ....+.+.+.++.++.|++.+...+...+++.+.+|++      .|+++++.
T Consensus       304 ~~~~l~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~G~v~g~  374 (1140)
T PRK06814        304 FGLDLAFASSSVPAEPAQLKS--ILVF-LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA------HRARVIAA  374 (1140)
T ss_pred             HHHHHHhcccccccccccccc--hhhh-hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc------cceeeeHH
Confidence            54444432000  0 000000  0000 00033556777888899999999999999999999998      59999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhc-ccchhHHHHHHHHH
Q 007932          185 WMFSSFIGALCATLGLVYIQE-NLGWGLGYGIPTAG  219 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~-~~~~~~~f~~~~~~  219 (584)
                      +++...+|..+++++.+.+.. ..++...|++.++.
T Consensus       375 ~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        375 NNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            999999999999999988863 44566666554443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.81  E-value=2.6e-07  Score=93.53  Aligned_cols=153  Identities=12%  Similarity=0.045  Sum_probs=105.7

Q ss_pred             hhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcc
Q 007932           57 SQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTS  136 (584)
Q Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (584)
                      +..|++..+++.+.........+..++.|.++||+ ||||.-++.++++.++.+.-- .                    +
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~-~--------------------~  119 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKH-S--------------------S  119 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHh-c--------------------c
Confidence            46899999999999999999999999999999999 999999999999888875322 2                    5


Q ss_pred             hHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh-hHHhHhHHHHhhhhhhhhcccch--hHHH
Q 007932          137 QIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM-FSSFIGALCATLGLVYIQENLGW--GLGY  213 (584)
Q Consensus       137 ~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~g~~~~~~l~~~~~~--~~~f  213 (584)
                      +...++++|++.|++.+...++..+.....+..+.-+. ...+.-++... +...+-++++..++-++.+..+.  ..+|
T Consensus       120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF  198 (354)
T PF05631_consen  120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPF  198 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchH
Confidence            68889999999999999999888877655443221000 02233333222 11122233334455555555443  6788


Q ss_pred             HHHHHHHHHHHHHHHHhCC
Q 007932          214 GIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~  232 (584)
                      .......+++.+++....+
T Consensus       199 ~~a~~~l~~~~~~I~~~W~  217 (354)
T PF05631_consen  199 DAAIVLLAVAAVLILKTWP  217 (354)
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            8887777766665554433

>PRK09848 glucuronide transporter; Provisional

Probab=98.81  E-value=2.9e-08  Score=107.05  Aligned_cols=163  Identities=14%  Similarity=0.109  Sum_probs=124.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.++....+.++...+++......+.|+++.+|.+....++......++..++.++.++++||+ |+|+++.++.++.++
T Consensus       228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i  306 (448)
T PRK09848        228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC  306 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence            5566667777777777777777777788888888766555545444667788999999999998 999999999988888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhc-ccceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERN-LKVSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~  186 (584)
                      +.+++.+..                  ..+.+.+++..++.|+|.+...+...++.+|..|.++.+..+ +.+..++.++
T Consensus       307 ~~~~~~~~~------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~  368 (448)
T PRK09848        307 GYLLFFWVS------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS  368 (448)
T ss_pred             HHHHHHHcC------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence            877666531                  134566677778889999999999999999998865421111 3588889999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccch
Q 007932          187 FSSFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~  209 (584)
                      +...+|..+|+.+.+.+.+..||
T Consensus       369 ~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        369 FTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999998887655444

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.79  E-value=1e-07  Score=100.96  Aligned_cols=162  Identities=12%  Similarity=-0.041  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007932           39 FERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASL  118 (584)
Q Consensus        39 ~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~  118 (584)
                      +.+..........+.|+++.+|.++.+.|.+.....++..++.++.+++.||. ++|+++..+.++ .+....+...   
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~~-~~~~~~~~~~---  290 (393)
T PRK11195        216 LFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGILM-GLVVLLMALQ---  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHHH-HHHHHHHHHH---
Confidence            33444555556677888889999999999999999999999999999999998 999888877533 3333333332   


Q ss_pred             cccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhh
Q 007932          119 KFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATL  198 (584)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  198 (584)
                                       .+.+...+..++.|++.+...+..++.+.+..|++.     .++++.+..+...++|..++..
T Consensus       291 -----------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~  348 (393)
T PRK11195        291 -----------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLG  348 (393)
T ss_pred             -----------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHH
Confidence                             335556667778899988888888888888655442     3799999999999999999998


Q ss_pred             hhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          199 GLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       199 ~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +.+.+ ...|-+..+.+.++..++.+.+.+
T Consensus       349 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        349 LYSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             HHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            88866 457777777776666555544433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.77  E-value=2e-07  Score=97.81  Aligned_cols=167  Identities=13%  Similarity=-0.014  Sum_probs=113.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchh---HHHHH-HHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRF---WTFTL-SSL  103 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk---~~~~~-~~~  103 (584)
                      +.+|.+....++....+|++.+++|.|+++ .|++.. .+.......+...++   .++++||. .||   +.... ..+
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~-~r~~~r~~~~~~~~~  265 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIG---VAVIPDRV-ARAGLRSIYIRAAAL  265 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHH---HHHhhHHh-hhhhhHHHHHHHHHH
Confidence            567888888999999999999999999964 677754 454444444444433   57888886 543   33232 333


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      +.+++.......                    .+.....+...+.+++.....+...++.+|.+|++      .|+++.+
T Consensus       266 ~~a~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~rgt~~G  319 (368)
T TIGR00903       266 LIAAFFLALAFE--------------------LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE------LHGKAAG  319 (368)
T ss_pred             HHHHHHHHHHHc--------------------cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh------hcCcccc
Confidence            333333333322                    11223344445566667777777889999999998      5999999


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHH
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      +.+...++|+..+|.+.+.+..  +.+..|.+.++..+++.+...
T Consensus       320 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       320 AIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888774  666677766666555555543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.77  E-value=2.9e-08  Score=107.80  Aligned_cols=165  Identities=13%  Similarity=0.020  Sum_probs=118.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.++.++...++.+...+......+.|.+..++ +....+.......++..++.++.++++||+ |+|++++++.++.++
T Consensus       231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~  308 (473)
T PRK10429        231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL  308 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence            666777777777777777666666545554444 555666666666788889999999999999 999999988887676


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhh-cccceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYER-NLKVSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~  186 (584)
                      +.+......-.+               ..+.+.+++.-++.|++.+...+...++++|..|.++-+.. ++.+..++.+.
T Consensus       309 ~~~~~~~~~~~~---------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~  373 (473)
T PRK10429        309 SCGVLLLMGLAA---------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQT  373 (473)
T ss_pred             HHHHHHHHhccC---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence            665544321000               13455666677788899999999999999999875432111 12455788999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccch
Q 007932          187 FSSFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~  209 (584)
                      +...+|..+++.+.|++.+..|+
T Consensus       374 ~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        374 MVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998765554

>TIGR00898 2A0119 cation transport protein

Probab=98.76  E-value=3.7e-08  Score=107.88  Aligned_cols=143  Identities=12%  Similarity=0.046  Sum_probs=102.8

Q ss_pred             hcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcch
Q 007932           58 QLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQ  137 (584)
Q Consensus        58 ~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (584)
                      .++.+..   .......+...++.++.+++.||+ |||+++.++.++.+++.+++.+..+                  ..
T Consensus       352 ~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~------------------~~  409 (505)
T TIGR00898       352 NLGGNIY---LDLFISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV------------------DL  409 (505)
T ss_pred             ccCCChH---HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC------------------Cc
Confidence            4454433   233344566778888999999998 9999999998888888776665421                  11


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHH
Q 007932          138 IAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPT  217 (584)
Q Consensus       138 ~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~  217 (584)
                      .+...+..++.+++.+...+....+.+|.+|++      .|++++++.+....+|+.++|.+.+ +.+ .++..++.+.+
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~  481 (505)
T TIGR00898       410 YFLRTALAVLGKFGITSAFQMVYLYTAELYPTV------VRNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFG  481 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH------HHhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHH
Confidence            233444445556666777788889999999988      5999999999999999999999988 443 45666777766


Q ss_pred             HHHHHHHHHHHHh
Q 007932          218 AGLLFSLVIFYIG  230 (584)
Q Consensus       218 ~~~~~~~~~~~~~  230 (584)
                      +..+++.++.++.
T Consensus       482 ~~~~~~~~~~~~l  494 (505)
T TIGR00898       482 GLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHHHHHHcC
Confidence            6655555554443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.73  E-value=3.1e-08  Score=106.19  Aligned_cols=177  Identities=14%  Similarity=0.018  Sum_probs=123.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc-------hhHHH-H
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG-------RFWTF-T   99 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-------rk~~~-~   99 (584)
                      +.+|.+.+..++++.+++.+..+.|.|+.+.+|+|..+.|+..++..+.+.+..+++|.++||...       +||++ .
T Consensus       258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~  337 (466)
T KOG2532|consen  258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT  337 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence            567899999999999999999999999999999999999999999999999999999999999722       12222 2


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccc
Q 007932          100 LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV  179 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (584)
                      ++....+++.+.+++..                 + .+....++...+.-...|...+-...-..|..|.+       -+
T Consensus       338 i~~~~~ai~l~~l~~~~-----------------~-~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~-------a~  392 (466)
T KOG2532|consen  338 IAFGGPAVFLLVLAFTS-----------------D-EHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQH-------AG  392 (466)
T ss_pred             HHHHHHHHHHHeeeecC-----------------C-CcchHHHHHHHHHHHHcccchhhhHhhhhhccchH-------HH
Confidence            33333344444444331                 0 11111222222211122322333333334444443       68


Q ss_pred             eeeeeehhHHhHhHHHHhhhhhhhhcc---cchhHHHHHHHHHHHHHHHHHHH
Q 007932          180 SFFNWWMFSSFIGALCATLGLVYIQEN---LGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       180 ~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ..+++.+...++.+.++|.+.+.+...   ..|+..|++.++..+++-+++.+
T Consensus       393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence            899999999999999999999999842   36999999998887777655444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.71  E-value=3.5e-07  Score=91.97  Aligned_cols=170  Identities=14%  Similarity=0.142  Sum_probs=136.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..|.+.+..-+.++.+|.++.|+|.++. +.|+|..++|+..+...+......++.-++++|.-.+|+......+.+.+
T Consensus       208 ~~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~  286 (395)
T COG2807         208 PLAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLV  286 (395)
T ss_pred             chhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            45788888899999999999999999987 56999999999999999999999999999999764788888888888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      |...+.+..                   .+...+.  -+++|+|.|..+|..-+.+.+..++.+     +-++..+..+.
T Consensus       287 G~~G~~~~P-------------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~-----~Aa~LSgmaQg  340 (395)
T COG2807         287 GLVGLLLAP-------------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA-----IAAALSGMAQG  340 (395)
T ss_pred             HHHHHHHhh-------------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH-----HHHHHHHHhhh
Confidence            888877763                   1222222  478999999999999999999887654     46667777666


Q ss_pred             HHhHhHHHHhhhhhhhhccc-chhHHHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENL-GWGLGYGIPTAGLLFSL  224 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~-~~~~~f~~~~~~~~~~~  224 (584)
                      ...+=+++||.+.|++-|.. +|+.+.+..+...++..
T Consensus       341 ~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~  378 (395)
T COG2807         341 VGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLML  378 (395)
T ss_pred             hhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHH
Confidence            66677778899999998865 48877665555433333

>PRK11043 putative transporter; Provisional

Probab=98.70  E-value=4e-07  Score=96.57  Aligned_cols=153  Identities=10%  Similarity=-0.023  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932           35 GYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTM  114 (584)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~  114 (584)
                      +........++.+..+.|.|++ +.|.+..+.++......++..++.++.+++.||+ |||+.+....+..+++.+.+..
T Consensus       210 ~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~  287 (401)
T PRK11043        210 LIFAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWL  287 (401)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444555666777787875 5799999999888888888889999999999998 9999876666555555443332


Q ss_pred             hhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHH
Q 007932          115 AASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGAL  194 (584)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  194 (584)
                      .....               ..+...+.+...+.+++.+...+...+...|..|++       ++++.++++.....++.
T Consensus       288 ~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~g~~~~~~~~~~~  345 (401)
T PRK11043        288 ASLLS---------------HPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQA-------TGKAAALQNTLQLGLCF  345 (401)
T ss_pred             HHHhc---------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCccc-------ChHHHHHHHHHHHHHHH
Confidence            21100               123444555666778888888888888877877643       89999999988888888


Q ss_pred             HHhhhhhhhhcccchhH
Q 007932          195 CATLGLVYIQENLGWGL  211 (584)
Q Consensus       195 ~g~~~~~~l~~~~~~~~  211 (584)
                      +++.+.+.+.+......
T Consensus       346 ~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        346 LASLLVSALISTPLLTT  362 (401)
T ss_pred             HHHHHHHHccCCChhHH
Confidence            88888888876443333

>TIGR00901 2A0125 AmpG-related permease

Probab=98.69  E-value=8.4e-08  Score=99.98  Aligned_cols=145  Identities=9%  Similarity=0.015  Sum_probs=111.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHH-HHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           29 ACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWS-GVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      .++.+.+..++.+..++...++.+.|+++ +|+++.+.+.+.+... ++..++.+++|+++||+ |||+.++++.++.++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~  287 (356)
T TIGR00901       210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL  287 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence            36666667777788888899999999986 8999999988887665 56789999999999999 999999988887777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..+..+..+.....        + ....+.+.+..+.++.+++.+...+...+++.|.+|++      +|++.+++++.
T Consensus       288 ~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~  352 (356)
T TIGR00901       288 TNAGFVWLASNGHHD--------G-ITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK------FGATQMALLSS  352 (356)
T ss_pred             HHHHHHHHHhcCccc--------c-cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC------ccHHHHHHHHH
Confidence            666555432100000        0 00023456777778889999999999999999999999      59999998776


Q ss_pred             HHh
Q 007932          188 SSF  190 (584)
Q Consensus       188 ~~~  190 (584)
                      ..|
T Consensus       353 ~~~  355 (356)
T TIGR00901       353 LSA  355 (356)
T ss_pred             HHh
Confidence            654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.67  E-value=4e-07  Score=96.27  Aligned_cols=146  Identities=11%  Similarity=0.034  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 007932           40 ERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK  119 (584)
Q Consensus        40 ~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~  119 (584)
                      ..........+.+.|+.+++|+++.+.+.......++..++.++.|++.||+ |||+.+.++.++..++.+.+.....  
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~--  291 (392)
T PRK10473        215 SVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSPS--  291 (392)
T ss_pred             HHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            3333344455567778888999999999988899999999999999999998 9999999998888888777666521  


Q ss_pred             ccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhh
Q 007932          120 FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLG  199 (584)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  199 (584)
                                      .....+....+..|++.+.  +..  ...+..|.+      +|+   +..+....++..+++.+
T Consensus       292 ----------------~~~~~~~~~l~~~g~~~~~--~~~--~~~~~~~~~------~~~---g~~~~~~~~~~~~g~~~  342 (392)
T PRK10473        292 ----------------HAVSLFGITLICAGFSVGF--GVA--MSQALGPFS------LRA---GVASSTLGIAQVCGSSL  342 (392)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHh--HHH--HHHHhccCc------ccc---cHHHHHHHHHHHHHHHH
Confidence                            1111222222233443332  222  223334443      233   33334455676777777


Q ss_pred             hhhhhcccchhHHHHHHH
Q 007932          200 LVYIQENLGWGLGYGIPT  217 (584)
Q Consensus       200 ~~~l~~~~~~~~~f~~~~  217 (584)
                      ++++.+..|+...+.+.+
T Consensus       343 ~~~l~~~~g~~~~~~~~~  360 (392)
T PRK10473        343 WIWLAAVLGISAWNMLIG  360 (392)
T ss_pred             HHHHHHHhccchhHHHHH
Confidence            777777677654444333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.67  E-value=3.2e-07  Score=91.94  Aligned_cols=172  Identities=13%  Similarity=0.082  Sum_probs=114.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--C-----------------CchhhhhhHHHHHHHHHHHhhhHhHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQL--H-----------------EDTVSSVRNVNNWSGVVWITPLLGAYI   87 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l--~-----------------~~~~~~~~~~~~~~~~~~~~~~~~G~l   87 (584)
                      +|....+..+.+...+.||+.........+...  +                 .+...--.=..+.++.-+-+.++.+++
T Consensus       325 rkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~i  404 (528)
T KOG0253|consen  325 RKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVI  404 (528)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHH
Confidence            355667777888888999988766554433211  1                 111122223445567777888999999


Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccC
Q 007932           88 ADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQF  167 (584)
Q Consensus        88 aD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~  167 (584)
                      .||+ |||+++....+++.+..+++....               ++.. ..-+++.+|++    .++.+.+.+.|..|++
T Consensus       405 verl-GRKkTMal~l~~f~iflfll~~c~---------------~rn~-~tvllf~araf----isg~fqvaYvYtPEVy  463 (528)
T KOG0253|consen  405 VERL-GRKKTMALSLILFGIFLFLLTTCK---------------TRNA-YTVLLFTARAF----ISGAFQVAYVYTPEVY  463 (528)
T ss_pred             HHHh-cchhHHHHHHHHHHHHHHHHHHhc---------------Ccch-hHHHHHHHHHH----HhchheEEEEecCccc
Confidence            9998 999999999999988887776542               1111 11234444444    4445567889999999


Q ss_pred             CCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q 007932          168 DDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIF  227 (584)
Q Consensus       168 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~  227 (584)
                      |..      .|+.+.|....+..+|+++.|.++ ...+.. -..+..+.+...+++.++.
T Consensus       464 PTa------vRatgvGtcSsmaRIggI~~p~iA-~~~e~s-~sl~i~vy~~~~ilagIav  515 (528)
T KOG0253|consen  464 PTA------VRATGVGTCSSMARIGGIFSPVIA-MRAELS-TSLPIFVYGALFILAGIAV  515 (528)
T ss_pred             chh------hhhcchhhhhhHHhhhhhhhhHHH-HHhccc-eeehHHHHHHHHHHHHHHh
Confidence            998      599999999999999999999988 333322 2334444444444444443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.65  E-value=3e-08  Score=102.47  Aligned_cols=144  Identities=18%  Similarity=0.187  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-hhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED-TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLG  108 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~  108 (584)
                      +|......+...+.++....+.+.|+.+.+|.+ ..+.+...+...++..++.++.|++.||+ |+|+...+......++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHH
Confidence            344455555555677778889999999999999 78999999999999999999999999998 9988888877776666


Q ss_pred             HHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhH
Q 007932          109 MILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFS  188 (584)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  188 (584)
                      .+.+.....                 ..+....++..++.|++.+...+...+++.|.+|++      +++++.+..+..
T Consensus       287 ~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~  343 (352)
T PF07690_consen  287 ALGLLLLPF-----------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE------YRGTAFGLFNSI  343 (352)
T ss_dssp             HHHHCCSHH-----------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC------HHHHHHHHHHHH
T ss_pred             HHHHHHHHH-----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHH
Confidence            655554421                 123455666777889999999999999999999988      699999999999


Q ss_pred             HhHhHHHHh
Q 007932          189 SFIGALCAT  197 (584)
Q Consensus       189 ~~~g~~~g~  197 (584)
                      .++|..+||
T Consensus       344 ~~~~~~igP  352 (352)
T PF07690_consen  344 GSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHCC
Confidence            999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.64  E-value=1.2e-07  Score=102.98  Aligned_cols=176  Identities=16%  Similarity=0.088  Sum_probs=150.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc--hhHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG--RFWTFTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--rk~~~~~~~~~~  105 (584)
                      +..+++.....+..++++....+++.|.. ..+.+..++..+.++..+...++.++.|+++|+. .  ++.++.++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence            55677788888889999988889998977 8899999999999999999999999999999997 6  455666666676


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      +++...+...                    .+.+.+++.-.+.|+..|...+..+..+.|..+.+      +...++|+.
T Consensus       376 gl~~~~~p~~--------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~------~l~~a~Gl~  429 (509)
T KOG2504|consen  376 GLARLFLPFA--------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE------KLSNAYGLL  429 (509)
T ss_pred             HHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh------hcchHHHHH
Confidence            7666666665                    44677888888899999999888888999999988      699999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHhC
Q 007932          186 MFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFYIGS  231 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~  231 (584)
                      .....++..+||.+.|++.+..+ |...|+..++..+++..+++...
T Consensus       430 l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  430 LLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999999999999988877 99999999988888877766654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.64  E-value=3.4e-07  Score=96.05  Aligned_cols=150  Identities=10%  Similarity=-0.045  Sum_probs=98.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..+..+....+...+.+.+..+.+.++.+.+|.++.+.+.......++..++.++.|++.||+ |||+++.++.++..+
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~  272 (377)
T PRK11102        194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFI  272 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence            3345555555666666677777777788888999999999999999999999999999999998 999999988876544


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      ..+.+......                ..+.+...++..+.+.+.+...+.....+.|..| +      .++++.+..+.
T Consensus       273 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~g~~~~~~~~  329 (377)
T PRK11102        273 MGIWLVVSALL----------------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-H------MAGTASSLAGT  329 (377)
T ss_pred             HHHHHHHHHHH----------------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-c------cchHHHHHHHH
Confidence            33332222100                0223334444444444455555555566677766 3      37777776554


Q ss_pred             H-HhHhHHHHhhhhh
Q 007932          188 S-SFIGALCATLGLV  201 (584)
Q Consensus       188 ~-~~~g~~~g~~~~~  201 (584)
                      . ..+|..+++++++
T Consensus       330 ~~~~~g~~~g~~~~~  344 (377)
T PRK11102        330 LRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            3 3456666665543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.59  E-value=2.1e-07  Score=97.05  Aligned_cols=142  Identities=15%  Similarity=0.105  Sum_probs=106.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..+.+....+......+++..+.+.|+++.+|.++.+++.......+...++.+++|+++||+ |||+.+..+.....+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~  303 (366)
T TIGR00886       225 RHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAM  303 (366)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHH
Confidence            3455555666666666778888899999999999999999999999999999999999999998 999988888777666


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++.+...                +..+.+.+.+...+.+++.|...+...+++++.+|.+       +++..++.+.
T Consensus       304 ~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~g~~~g~~~~  360 (366)
T TIGR00886       304 GAFLVVLGLV----------------SPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRRA-------TGAVSGLVGA  360 (366)
T ss_pred             HHHHHHhcCC----------------CcchHHHHHHHHHHHHHHhccccchhhhcchhhchhh-------cccHHHHHHH
Confidence            6655554321                0013445555556666666776677778888888743       8998888877


Q ss_pred             HHhHhH
Q 007932          188 SSFIGA  193 (584)
Q Consensus       188 ~~~~g~  193 (584)
                      ..++|+
T Consensus       361 ~~~~g~  366 (366)
T TIGR00886       361 IGNLGG  366 (366)
T ss_pred             hccCCC
Confidence            777653

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.58  E-value=2.8e-07  Score=98.08  Aligned_cols=192  Identities=10%  Similarity=0.066  Sum_probs=134.0

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHH
Q 007932           22 SKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLS  101 (584)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  101 (584)
                      ..+..++.+.+.+.+.+..++.-...+.+..+.+-++-|++..++.+..........+..+.+.++.||+ |||+.++++
T Consensus       263 ~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~  341 (485)
T KOG0569|consen  263 KNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLIS  341 (485)
T ss_pred             cCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHH
Confidence            3345556677777777777776555555555556667799999999999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcch-HH-HHHHHHHHHHHhccc-ccccccccccccCCCCChhhhccc
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQ-IA-FFYSSLYIIAIGAGG-TKPNISTFGADQFDDFNPYERNLK  178 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~gi~~g~-~~~~~~~~~~~~~~~~~~~~~~~r  178 (584)
                      ..+..+..+++.....+...             ... .+ ..+++.++..++.+. ..|...-+.+|++|+..      |
T Consensus       342 ~~~~~~~~~~~~~~~~l~~~-------------~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~------R  402 (485)
T KOG0569|consen  342 LSLMAVALLLMSIALFLSNS-------------FGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSA------R  402 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccc------h
Confidence            99888888777766432220             000 11 123333333333222 35788899999999984      9


Q ss_pred             ceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCce
Q 007932          179 VSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIY  234 (584)
Q Consensus       179 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  234 (584)
                      ..++++......+..++..+.-..+.+.+|- ..|.+..+...+..+..+...|+.
T Consensus       403 ~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  403 SAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            9999988888888887776666777776664 455555555555555555544443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.57  E-value=8.7e-07  Score=93.70  Aligned_cols=176  Identities=10%  Similarity=0.003  Sum_probs=131.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |+..+.++..+......-....+.+.|+++.-|.+....+.+.+...+.-.+.-.+.+++..|+ |-|++++++++..++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~v  285 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAV  285 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            4455556666777777777788889998865447767777666666667777778889999999 999999999999888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHH----HHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAF----FYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      =..+.+...+                   +.+.    ...+-.+.|+..+....+...++.+..|++      .|+++.+
T Consensus       286 R~~l~a~~~~-------------------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~------~~at~Q~  340 (400)
T PF03825_consen  286 RWLLYAYFSD-------------------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE------LRATAQG  340 (400)
T ss_pred             HHHHHHHhcC-------------------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc------chHHHHH
Confidence            8888877621                   1222    223345689999999999999999999998      5999999


Q ss_pred             eehhH-HhHhHHHHhhhhhhhhcccchh------HHHHHHHHHHHHHHHHHHH
Q 007932          184 WWMFS-SFIGALCATLGLVYIQENLGWG------LGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       184 ~~~~~-~~~g~~~g~~~~~~l~~~~~~~------~~f~~~~~~~~~~~~~~~~  229 (584)
                      ++... ..+|..+|..++|++.+++|-+      ..+.+.++..++..++++.
T Consensus       341 l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~  393 (400)
T PF03825_consen  341 LYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVI  393 (400)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            87765 5799999999999999887644      3444555544444444443

>PRK09669 putative symporter YagG; Provisional

Probab=98.57  E-value=3.3e-07  Score=98.77  Aligned_cols=162  Identities=12%  Similarity=0.068  Sum_probs=107.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |..+.++...++...+........+.|.+..++. +...+.......+...++.+++++++||+ |+|+.+.++.+..++
T Consensus       229 ~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~  306 (444)
T PRK09669        229 SQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVI  306 (444)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            3444555555554444443333333333434432 33334445555677778888999999998 999999988776554


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhc-ccceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERN-LKVSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~  186 (584)
                      +.....+..                  ..+.+.+++..++.|++.+...+..+++++|..+.++.+..+ +.+..++.++
T Consensus       307 ~~~~~~~~~------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~  368 (444)
T PRK09669        307 LSALIFFIP------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNL  368 (444)
T ss_pred             HHHHHHHhC------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHH
Confidence            433333221                  134666777778899999999999999999999854422111 3456678888


Q ss_pred             hHHhHhHHHHhhhhhhhhcccch
Q 007932          187 FSSFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~  209 (584)
                      +...+|..+|+.++|++.+..|+
T Consensus       369 ~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        369 FAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999998776555

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.55  E-value=1.1e-06  Score=92.48  Aligned_cols=139  Identities=11%  Similarity=0.125  Sum_probs=100.1

Q ss_pred             ccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccce
Q 007932          368 SLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPM  447 (584)
Q Consensus       368 ~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (584)
                      .....+..+-++.-+++.+++.++++-           ..+..|+++.++=++....+                     .
T Consensus       410 v~~a~~~~gEI~~~ffs~klI~kiGHv-----------~v~~lgLa~~~~Rf~~~S~L---------------------~  457 (618)
T KOG3762|consen  410 VVSALCHAGEILFYFFSFKLIEKIGHV-----------NVMYLGLACNVGRFLYYSYL---------------------Q  457 (618)
T ss_pred             ehhhhhccchHHHHHHHHHHHHHhccc-----------ceeeehhhHHHHHHHHHHHh---------------------c
Confidence            445556666666666666555444433           23677877777777666666                     4


Q ss_pred             eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHH-HHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCC
Q 007932          448 SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFT-SGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLN  526 (584)
Q Consensus       448 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~  526 (584)
                      ++|..++.=.+.|+....+......|+...+|++.|.+++|+.. ....+|-.+|.++.+.+....              
T Consensus       458 n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f--------------  523 (618)
T KOG3762|consen  458 NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF--------------  523 (618)
T ss_pred             CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee--------------
Confidence            77788888899999999999999999999999999999999987 555677777777776664311              


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932          527 DCHLDYYYGFLMVISILNLGAFFWASSR  554 (584)
Q Consensus       527 ~~~~~~~f~~~~~~~~~~~l~~~~~~~~  554 (584)
                        +....|..+++.+++.++++..+.+.
T Consensus       524 --g~~ttf~~~giAcl~~l~~~~~iq~~  549 (618)
T KOG3762|consen  524 --GARTTFRIFGIACLVTLALFISIQLL  549 (618)
T ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence              22345788888888777666655443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.53  E-value=1.2e-06  Score=92.61  Aligned_cols=162  Identities=18%  Similarity=0.169  Sum_probs=131.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.+..++...++...++.-..+...-|.+..+|.+.............+..++.++..++.+|+ |+|+++.++.++.++
T Consensus       236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i  314 (467)
T COG2211         236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAV  314 (467)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHH
Confidence            5566666677777777777777777778888898888888888888888888899999999999 999999999999999


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccc-ceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLK-VSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~  186 (584)
                      +.+++.+..                  ..+..++++..++.++|.+...+..+++++|..+..|-+..+|| |..++.+.
T Consensus       315 ~~~~~~f~~------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~t  376 (467)
T COG2211         315 GYLLLYFTP------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMT  376 (467)
T ss_pred             HHHHHHhhc------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence            998888873                  25678889999999999999999999999999987664444444 55666778


Q ss_pred             hHHhHhHHHHhhhhhhhhcccc
Q 007932          187 FSSFIGALCATLGLVYIQENLG  208 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~  208 (584)
                      +..=+|.+++..+.|++....|
T Consensus       377 F~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         377 FFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC
Confidence            8888888888888888765443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.48  E-value=1.6e-06  Score=92.35  Aligned_cols=163  Identities=9%  Similarity=-0.071  Sum_probs=114.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           29 ACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-LHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      ..+..++..++......++.++++.|+.+. .+.+....+...+.+..+..++.+++|++.||+ ++||++.+..++..+
T Consensus       233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~  311 (410)
T TIGR00885       233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMA  311 (410)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHH
Confidence            344445555555555556778888998643 244445555566666788899999999999998 999998888777777


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      ..++.....                    +.. ..+...+.|+..+.++|+..+...+..+++.       ..+.+...+
T Consensus       312 ~~ll~~~~~--------------------~~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~~  363 (410)
T TIGR00885       312 LCLGSIFAG--------------------GHV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGLVM  363 (410)
T ss_pred             HHHHHHHcC--------------------ChH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHHHH
Confidence            766666542                    111 3456667788889999999999999998662       222333333


Q ss_pred             HHhHhHHHHhhhhhhhhccc------chhHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENL------GWGLGYGIPTAGLL  221 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~------~~~~~f~~~~~~~~  221 (584)
                      + .+|+.+.|.+.|++.+..      +.+..|+++.++.+
T Consensus       364 ~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~  402 (410)
T TIGR00885       364 A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFA  402 (410)
T ss_pred             H-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHH
Confidence            3 399999999999999854      47778887766533

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.45  E-value=1.2e-06  Score=91.54  Aligned_cols=177  Identities=12%  Similarity=0.062  Sum_probs=141.8

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH---EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      -|++|.+.+........+++.-...+.|.+..++   .++...|...+...+.-.+.-.+..++.+|+ |.|+.++++.+
T Consensus       219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~  297 (412)
T PF01306_consen  219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV  297 (412)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence            4678888887777777878777778888876544   3445577777777778888888899999998 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      ++++=.++++++                    ++.+.+.+...+.++-.+.....+.-++++.+|++      ..++...
T Consensus       298 i~~iRi~~~~~~--------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~r------lsAt~y~  351 (412)
T PF01306_consen  298 IMAIRIIGSGFA--------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKR------LSATLYL  351 (412)
T ss_dssp             HHHHHHHHHHT----------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GG------GHHHHHH
T ss_pred             HHHHHHHHHhhh--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------HHHHHHH
Confidence            988888888877                    56788999999999999999999999999999987      3566666


Q ss_pred             e-ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          184 W-WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       184 ~-~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      + ++....+|..+.+.++|++.++.|++..|++.+.+++...++..+.
T Consensus       352 v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~  399 (412)
T PF01306_consen  352 VGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFT  399 (412)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheee
Confidence            5 4788899999999999999999999999988887766555554443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.42  E-value=4.8e-06  Score=88.08  Aligned_cols=147  Identities=9%  Similarity=-0.040  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Q 007932           39 FERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASL  118 (584)
Q Consensus        39 ~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~  118 (584)
                      ....+........+.|+++.+|.++.+.++.......+..++.++.+++.||+ +|+...  +.....++.+........
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~  294 (394)
T PRK11652        218 GTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGWF  294 (394)
T ss_pred             HHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            33333444445566788888999999999888888888888889999999998 743322  222222222222111000


Q ss_pred             cccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhh
Q 007932          119 KFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATL  198 (584)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  198 (584)
                                     ...+.+.+.+..++.+++.+...|...+...|.+|++       ++...+..+...++|+.+++.
T Consensus       295 ---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~  352 (394)
T PRK11652        295 ---------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAAL  352 (394)
T ss_pred             ---------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHH
Confidence                           0123455677778889999998999999999988743       788899999899999999999


Q ss_pred             hhhhhhcccchh
Q 007932          199 GLVYIQENLGWG  210 (584)
Q Consensus       199 ~~~~l~~~~~~~  210 (584)
                      +++.+.....+.
T Consensus       353 ~~~~~~~~~~~~  364 (394)
T PRK11652        353 LSAMLPQTGQFS  364 (394)
T ss_pred             HHHHccCCchHH
Confidence            998887654333

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.36  E-value=1.2e-05  Score=78.69  Aligned_cols=132  Identities=11%  Similarity=-0.003  Sum_probs=101.8

Q ss_pred             HHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcC
Q 007932           52 VNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICS  131 (584)
Q Consensus        52 ~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (584)
                      ...+++++|+|..|...+...-.++..++ ++.|.+.|++ |.+.++.+|.+...+|+.++....+-..           
T Consensus        25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i-----------   91 (250)
T PF06813_consen   25 SPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI-----------   91 (250)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc-----------
Confidence            45678999999999999999999999875 8889999999 9999999999999999988887642110           


Q ss_pred             CCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhc
Q 007932          132 KTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE  205 (584)
Q Consensus       132 ~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  205 (584)
                        ...+.|.+.+..++.+.+.+......-....+.||++       ||.+.++.-....+++.+-..+-..+-+
T Consensus        92 --~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~-------RG~vvgilk~~~GLSaai~t~i~~~~f~  156 (250)
T PF06813_consen   92 --PSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRS-------RGTVVGILKGFFGLSAAIFTQIYSAFFG  156 (250)
T ss_pred             --CccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccc-------cCceehhhhHHHHhHHHHHHHHHHHHcC
Confidence              1245666666666666766665555555566889865       9999999988888888876555444433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.32  E-value=8.3e-08  Score=99.21  Aligned_cols=143  Identities=16%  Similarity=0.185  Sum_probs=113.7

Q ss_pred             ccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCcc
Q 007932          366 AASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIV  445 (584)
Q Consensus       366 ~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (584)
                      .+.++....+..++++|+.+++.+|+-|++           .+.+|..+..++.+..++..                   
T Consensus        70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~-----------v~~vG~~iW~~Av~~~~fs~-------------------  119 (493)
T KOG1330|consen   70 LGLLQTVFIVVFMIASPLFGYLADRYNRKR-----------VIAVGIFIWTLAVFASGFSN-------------------  119 (493)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhhcCcce-----------EEeeHHHHHHHHHHHHHHHH-------------------
Confidence            456777778888999999988865555543           37889999998888887762                   


Q ss_pred             ceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCC
Q 007932          446 PMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNL  525 (584)
Q Consensus       446 ~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~  525 (584)
                        ++|.+.+.=.+.|+|+..+.|...++++|.+|++.|++..+++++....|+.+|......+.+..             
T Consensus       120 --~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-------------  184 (493)
T KOG1330|consen  120 --HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-------------  184 (493)
T ss_pred             --HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-------------
Confidence              45667777889999999999999999999999999999999999999999999877776664322             


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007932          526 NDCHLDYYYGFLMVISILNLGAFFWASSRY  555 (584)
Q Consensus       526 ~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~  555 (584)
                        +++.+.|...++++++++++.+++.++.
T Consensus       185 --~~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  185 --FWWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             --cceEEEEEeehHHHHHHHHHHHhhccCc
Confidence              1235668888898888877766665543

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.29  E-value=8.1e-06  Score=84.12  Aligned_cols=173  Identities=17%  Similarity=0.229  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHH
Q 007932           33 LVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILL  112 (584)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~  112 (584)
                      .+..-+...+++++=-..+-+|--+.+|++..++......+..+..++-.+.|++..|-.++|++-.+++...+++..+.
T Consensus       213 f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~li  292 (403)
T PF03209_consen  213 FFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALI  292 (403)
T ss_pred             HHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHH
Confidence            33334444555555556666888899999999999999999999999999999998854489999999999888888777


Q ss_pred             HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHh
Q 007932          113 TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIG  192 (584)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  192 (584)
                      .++..                 ..+.+.+..+.++.|++.|.+....-+.+.|...++      +.+.+++.+...+.+.
T Consensus       293 i~a~~-----------------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~------~aG~~mG~WGaaQA~A  349 (403)
T PF03209_consen  293 ILAGP-----------------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG------RAGLFMGAWGAAQAIA  349 (403)
T ss_pred             HHHHh-----------------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc------chhHHHHHHHHHHHHH
Confidence            76642                 145788999999999999999999999999999877      5799999999999999


Q ss_pred             HHHHhhhhhhhhc----------ccchhHHHHHHHHHHHHHHHHHH
Q 007932          193 ALCATLGLVYIQE----------NLGWGLGYGIPTAGLLFSLVIFY  228 (584)
Q Consensus       193 ~~~g~~~~~~l~~----------~~~~~~~f~~~~~~~~~~~~~~~  228 (584)
                      ..+|..++|.+.+          ..+|...|.+.++..++++.+..
T Consensus       350 ~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  350 RGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888754          13477778887777666665543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.28  E-value=7.2e-06  Score=72.06  Aligned_cols=133  Identities=19%  Similarity=0.240  Sum_probs=91.6

Q ss_pred             cchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeeh
Q 007932          371 SFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIF  450 (584)
Q Consensus       371 ~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (584)
                      ....++.++..++.+++.|+..+|+           .+..+..+..++.+.....                     .+.+
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~-----------~~~~~~~~~~~~~~~~~~~---------------------~~~~   52 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKP-----------VLLVGLFIFVLSTAMFALS---------------------SNIT   52 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhH-----------HHHHHHHHHHHHHHHHHHh---------------------ccHH
Confidence            3445566777777777766655542           3555666666665544433                     2344


Q ss_pred             hhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccch
Q 007932          451 WLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHL  530 (584)
Q Consensus       451 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~  530 (584)
                      ......++.+++.....+..+.++.|..|++.|+++.++.+....+|..+++.+.+.+.+.                .++
T Consensus        53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------------~~~  116 (141)
T TIGR00880        53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF----------------LGW  116 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc----------------cch
Confidence            5566678888888888899999999999999999999999999999999999988776421                123


Q ss_pred             hHHHHHHHHHHHHHHHHHHhh
Q 007932          531 DYYYGFLMVISILNLGAFFWA  551 (584)
Q Consensus       531 ~~~f~~~~~~~~~~~l~~~~~  551 (584)
                      .+.|++.+.+.++..+..+++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       117 RAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            445666666666555444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.27  E-value=4.3e-06  Score=90.88  Aligned_cols=186  Identities=11%  Similarity=0.049  Sum_probs=129.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhh----hhhHHHHHHHHHHHhhhHhHH----HhhcccchhHH--HH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVS----SVRNVNNWSGVVWITPLLGAY----IADTYIGRFWT--FT   99 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~G~----laD~~~Grk~~--~~   99 (584)
                      +..++....+.++.+.-..+.++.|..+..+.+...    .+++.+...+...+.+++..+    +.||..+.+..  +.
T Consensus       274 ~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~  353 (475)
T TIGR00924       274 YIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFT  353 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence            344455555666666666676777776654443222    567777777777777766554    45541133333  37


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccc
Q 007932          100 LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV  179 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (584)
                      +|+++.+++.+.+++.....           +.+...+.+.+.+..++.++|.....|...+++.+..|++      .|+
T Consensus       354 ~G~~l~~~~~~~~~~~~~~~-----------~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~------~~g  416 (475)
T TIGR00924       354 LGMLFCGASFLTFAASIWFA-----------DAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQR------LMG  416 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhc-----------CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHH
Confidence            78888888887776542110           0111246888999999999999999999999999999988      599


Q ss_pred             eeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          180 SFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       180 ~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      +.++.+.....+|..+++.+........+|...|...++..++..++.+...+
T Consensus       417 ~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       417 QMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888887766667888887777666655555554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11462 putative transporter; Provisional

Probab=98.25  E-value=8.1e-06  Score=88.35  Aligned_cols=160  Identities=11%  Similarity=0.026  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHH
Q 007932           30 CAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGM  109 (584)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~  109 (584)
                      .+.++...++..............|.+..+|. +...+.+...+.++..++.+++++++||+ |+|+++..+..+..+..
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~  307 (460)
T PRK11462        230 WRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVIS  307 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence            34444444444444343333333344434443 33445566677788888999999999998 99988776555444433


Q ss_pred             HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccc-ceeeeeehhH
Q 007932          110 ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLK-VSFFNWWMFS  188 (584)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~  188 (584)
                      ++..+..                  ..+...+++..++.|++.+...+...++++|..+.++-+..+|| +..++.+.+.
T Consensus       308 ~~~~~~~------------------~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~  369 (460)
T PRK11462        308 LAMFFVP------------------MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFV  369 (460)
T ss_pred             HHHHHhc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHH
Confidence            3332221                  02222344445566777777777778889998875542222233 3335777788


Q ss_pred             HhHhHHHHhhhhhhhhcccch
Q 007932          189 SFIGALCATLGLVYIQENLGW  209 (584)
Q Consensus       189 ~~~g~~~g~~~~~~l~~~~~~  209 (584)
                      ..+|..+|+.++|++.+..|+
T Consensus       370 ~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        370 LKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC
Confidence            999999999888887654443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.00014  Score=77.13  Aligned_cols=99  Identities=9%  Similarity=0.061  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHH
Q 007932           70 VNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIA  149 (584)
Q Consensus        70 ~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  149 (584)
                      ..+-.....+.+++++.+.|++ |.|+.+.++...+..-.+....                     .|.+.++++-.+.|
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~---------------------~N~y~~yfssallG  113 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLF---------------------PNSYYLYFSSALLG  113 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHh---------------------cchHHHHHHHHHhh
Confidence            5566777888999999999998 9999999998887776655554                     45677899999999


Q ss_pred             HhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHH
Q 007932          150 IGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCA  196 (584)
Q Consensus       150 i~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g  196 (584)
                      +|.+..+...-.++++..+++.      +.+..++.-.....+..+|
T Consensus       114 ~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~G  154 (461)
T KOG3098|consen  114 FGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIG  154 (461)
T ss_pred             hhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999988773      5555555444444444444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.24  E-value=8.7e-06  Score=84.28  Aligned_cols=166  Identities=16%  Similarity=0.098  Sum_probs=123.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcc---cchhHHHHHHH-H
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY---IGRFWTFTLSS-L  103 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~---~Grk~~~~~~~-~  103 (584)
                      +.++.+..+.+..++++-.=.+++++|++ .+|++-...+.+-....+...+.+|+.|..+||.   +||||.++... +
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~  110 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL  110 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence            67788888888888888877888889976 7799888888777777888889999999999983   38888777654 5


Q ss_pred             HHHHHHHHHHHhhhccc-cCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          104 IYVLGMILLTMAASLKF-MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      +.+++.++..+++.+.- +.+   +.. ..........++++.-+.-+..-..+...-++++|...+++     ++.++.
T Consensus       111 ~i~~~l~Lig~aaDig~~lgd---~~~-~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~-----~~~~An  181 (498)
T KOG0637|consen  111 LIAVSLFLIGYAADIGLLLGD---NER-KPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA-----KKTRAN  181 (498)
T ss_pred             HHHHHHhhhhhHhhhhHHhcC---Ccc-cccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh-----hhhccc
Confidence            66777778777765442 111   110 00111344556666667777877888889999999998765     334499


Q ss_pred             eeehhHHhHhHHHHhhhhhhh
Q 007932          183 NWWMFSSFIGALCATLGLVYI  203 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l  203 (584)
                      +++.+...+|+.+|...+++.
T Consensus       182 s~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  182 SVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhHHHHHHhcceeeeeccccc
Confidence            999999999999998777743

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.18  E-value=3e-05  Score=82.76  Aligned_cols=171  Identities=12%  Similarity=-0.039  Sum_probs=113.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.++...+...+....++.+..+.|.|+++.+|.+..+.++.......+..++..+.+++.++. +++|.......+..+
T Consensus       218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i  296 (413)
T PRK15403        218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV  296 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence            5566666667777777788888889999999999999999988778888888888888876554 444444333333344


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++....-..               ..+....+++.++.++|.+...|+.....-  .+.+.     .++++.+..+.
T Consensus       297 g~~l~~~~~~~~---------------~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~-----~~G~a~a~~~~  354 (413)
T PRK15403        297 GLALLIVGNLLW---------------PHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNL-----PKGTVSASLNM  354 (413)
T ss_pred             HHHHHHHHHHHc---------------cccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCC-----CCcHHHHHHHH
Confidence            443333221000               022333566777888888888877775332  22222     36888888888


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLF  222 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~  222 (584)
                      ....+..+++...+++..+ +-.++|.+..+...+
T Consensus       355 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        355 VILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            8888888888888888664 456666655554333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=2.2e-06  Score=87.07  Aligned_cols=177  Identities=12%  Similarity=-0.025  Sum_probs=131.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc--hhHHHHHHHHHHH
Q 007932           29 ACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG--RFWTFTLSSLIYV  106 (584)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G--rk~~~~~~~~~~~  106 (584)
                      .++...+...+.++..-..-+.+++++.+.+..+..+.|+.....++...++..+.|.++||+ +  |......++++..
T Consensus       271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G  349 (464)
T KOG3764|consen  271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVG  349 (464)
T ss_pred             hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHH
Confidence            355666666677777777788888999889886666999999999999999999999999999 9  6555555555555


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      .......+.                    .++..+++-++..+++.+...+..........+.+....-...+...++..
T Consensus       350 ~~~~~iP~~--------------------~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad  409 (464)
T KOG3764|consen  350 VSSGPIPFA--------------------TSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIAD  409 (464)
T ss_pred             HHhchhHhh--------------------hhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHH
Confidence            554444444                    345667888888888887777666666666665543211113678888899


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~  226 (584)
                      .+..+|.++||.++|.+.+..|++|.-.+.++..++-.-+
T Consensus       410 ~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv  449 (464)
T KOG3764|consen  410 AAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV  449 (464)
T ss_pred             HHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998877777664444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.15  E-value=6.2e-05  Score=77.16  Aligned_cols=157  Identities=15%  Similarity=0.089  Sum_probs=118.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |.++...++.++.--.=-++.++++.|+.+..|.+..++....+.+..+..++..++-++-.|+ ...|.+.+..+...+
T Consensus       236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~il  314 (422)
T COG0738         236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAIL  314 (422)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHH
Confidence            4445555555555444455678899999888999999999999999999999999999998898 888888777655444


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      -.+...+.                    ++. .-+.+.++.|...+.++|++.+...+..|++.     +.+..   .-.
T Consensus       315 l~~~~~l~--------------------~g~-v~~~~l~~ig~F~simfPTIfslal~~l~~~t-----s~~s~---~l~  365 (422)
T COG0738         315 LLLAVALI--------------------GGV-VALYALFLIGLFNSIMFPTIFSLALKNLGEHT-----SVGSG---LLV  365 (422)
T ss_pred             HHHHHHHh--------------------cCh-HHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-----cccce---eee
Confidence            44444443                    222 23445667899999999999999999999553     23333   334


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHH
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYG  214 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~  214 (584)
                      +..+|+++.|.+-|++.+..|-...+.
T Consensus       366 maivGGAiiP~l~G~i~d~~g~~~~~~  392 (422)
T COG0738         366 MAIVGGAIIPPLQGVIADMFGIQLTFL  392 (422)
T ss_pred             eheecchHHHHHHHHHHHhhhhHHHHH
Confidence            567899999999999999988776665

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.14  E-value=2.5e-05  Score=77.78  Aligned_cols=152  Identities=18%  Similarity=0.231  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHhhhhcCCch--hhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 007932           42 MAFYGIQSNLVNYLTSQLHEDT--VSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLK  119 (584)
Q Consensus        42 ~~~~~~~~~~~~yl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~  119 (584)
                      ..........+.+. .+.+.+.  ...++..+.+.+...++.++.|+++||+ |||+.++.+.....++.+++.+..+  
T Consensus        16 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--   91 (338)
T COG0477          16 LDLGLLSPALPLLL-STLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN--   91 (338)
T ss_pred             HhcchHHHHHHHHH-HHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence            33333333444443 3444444  4778999999999999999999999999 9999888888765666555555421  


Q ss_pred             ccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCC-CChhhhcccceeeeeehh-HHhHhHHHHh
Q 007932          120 FMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDD-FNPYERNLKVSFFNWWMF-SSFIGALCAT  197 (584)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~~g~~~g~  197 (584)
                                      ...+.+.+.|++.|++.+...+...+++.|.+|+ +      +|+...+.... ...+|..+++
T Consensus        92 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~  149 (338)
T COG0477          92 ----------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEAT------ERGLAVGLVTLGAGALGLALGP  149 (338)
T ss_pred             ----------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchh------HHHHHHHHHHHHHHHHHHHHHH
Confidence                            3477899999999999999999999999999987 3      47888887777 5778888888


Q ss_pred             hhhhhhhcc--cchhHHHHHHHHH
Q 007932          198 LGLVYIQEN--LGWGLGYGIPTAG  219 (584)
Q Consensus       198 ~~~~~l~~~--~~~~~~f~~~~~~  219 (584)
                      .+++.+...  .+|+..|.+....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~  173 (338)
T COG0477         150 LLAGLLLGALLWGWRAAFLLAALL  173 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHH
Confidence            777766553  5788866655443

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.06  E-value=2.9e-05  Score=61.44  Aligned_cols=70  Identities=23%  Similarity=0.199  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           33 LVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      +-...++...+.-.+.++++.|++ +.|+|+.++|.+.++..+...+++++.|+++||+ ||+|.++.....
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence            344455566666677889999987 5899999999999999999999999999999999 988888776543

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.06  E-value=2.9e-05  Score=74.77  Aligned_cols=89  Identities=13%  Similarity=0.025  Sum_probs=65.0

Q ss_pred             HhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCC
Q 007932           54 YLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKT  133 (584)
Q Consensus        54 yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (584)
                      |+-+..|+...+++.+.-.......+...+.|-|+|+. ||||.-+.-    .+.++++.+.-.                
T Consensus        62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvty----citYiLsCiTKh----------------  120 (454)
T KOG4332|consen   62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTY----CITYILSCITKH----------------  120 (454)
T ss_pred             eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeee----hHHHHHHHHhhc----------------
Confidence            45567788888888776666666777778889999998 999976544    444455555422                


Q ss_pred             CcchHHHHHHHHHHHHHhccccccccccccc
Q 007932          134 STSQIAFFYSSLYIIAIGAGGTKPNISTFGA  164 (584)
Q Consensus       134 ~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~  164 (584)
                       .++...++++|.+-|+..+...+...+...
T Consensus       121 -SpqYkVLmVGR~LGGiaTsLLFSaFEsWli  150 (454)
T KOG4332|consen  121 -SPQYKVLMVGRVLGGIATSLLFSAFESWLI  150 (454)
T ss_pred             -CCceEEEeehhhhhhHHHHHHHHHHHHHHH
Confidence             145567999999999999988877766543

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.05  E-value=0.0002  Score=74.78  Aligned_cols=173  Identities=13%  Similarity=0.102  Sum_probs=116.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhhhhhHHHH-HHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-LHEDTVSSVRNVNN-WSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~~~~~~~~~~~~-~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +...++++..++..+--  .-+++..|+.+. .|++..|...-+-. ..-......++...+.|.+ |-|++++++.+..
T Consensus         5 ~~~~llc~~gf~~~frP--sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~   81 (412)
T PF01770_consen    5 KITLLLCLFGFFKEFRP--SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSY   81 (412)
T ss_pred             HHHHHHHHHHHHHhcCC--CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence            44455565555555532  357788899887 99998887643332 3334445667778899998 9999999999888


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .+...++.+.                    ++...+-+.-++-|++.+. ..+-.+++=...|++      +..++.+..
T Consensus        82 i~t~~lll~~--------------------~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~------~yq~vts~~  134 (412)
T PF01770_consen   82 IITWLLLLFG--------------------TSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKE------HYQKVTSYT  134 (412)
T ss_pred             HHHHHHHHHH--------------------CcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHH------HHHHHHHHH
Confidence            8888887776                    4566778888888888766 344556666666665      356667777


Q ss_pred             hhHHhHhHHHHhhhhhhhhc--ccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          186 MFSSFIGALCATLGLVYIQE--NLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~--~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      ....-+|-.++..++-.+..  ..++...+++......++.++.++.
T Consensus       135 raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fL  181 (412)
T PF01770_consen  135 RAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFL  181 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence            77777777777666655544  3346666666666666665554443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.05  E-value=6.1e-05  Score=81.11  Aligned_cols=207  Identities=10%  Similarity=-0.010  Sum_probs=142.1

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchh------h----hhhHHHHHHHHHHHhhhHhHHHhhc
Q 007932           22 SKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTS-QLHEDTV------S----SVRNVNNWSGVVWITPLLGAYIADT   90 (584)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~l~~~~~------~----~~~~~~~~~~~~~~~~~~~G~laD~   90 (584)
                      ..++.+|.++.++.+.++.+++++.+..+.+.|+.+ .++-++.      +    ..+....+.+...+.+++--++.+|
T Consensus       252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446788999999999999999999999999999864 4443221      1    1233344555556667777888999


Q ss_pred             ccch-hHHHHHHHHHHHHHHHHHHHhhhccc-cCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCC
Q 007932           91 YIGR-FWTFTLSSLIYVLGMILLTMAASLKF-MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFD  168 (584)
Q Consensus        91 ~~Gr-k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~  168 (584)
                      + |+ |++..++.++.+++.+...+..+.++ ..+..+..-...++....+..++...+.|+..+.......+++++..+
T Consensus       332 ~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~  410 (477)
T TIGR01301       332 W-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSS  410 (477)
T ss_pred             h-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcc
Confidence            8 95 77778888888888877765542111 000000000000011113556677778899999999999999999999


Q ss_pred             CCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccc--hhHHHHHHHHHHHHHHHHHHHhCCc
Q 007932          169 DFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLG--WGLGYGIPTAGLLFSLVIFYIGSPI  233 (584)
Q Consensus       169 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~  233 (584)
                      ++.+    +.|..+|+.+.+.-+...+..+..|.+.+.+|  -.+.+.+.++..+++.+..+...|+
T Consensus       411 ~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~  473 (477)
T TIGR01301       411 NLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPR  473 (477)
T ss_pred             ccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence            5421    46999999999999999999887777655444  4567778888777777776665553

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.03  E-value=7.1e-06  Score=86.44  Aligned_cols=173  Identities=10%  Similarity=-0.065  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHH
Q 007932           32 FLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMIL  111 (584)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~  111 (584)
                      +.++..++..++.--+.+++--+++ +++-.+..-|........+-.+.-++.+++..|+ |+-+++.+++...++=.+.
T Consensus       375 lff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~  452 (618)
T KOG3762|consen  375 LFFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLY  452 (618)
T ss_pred             ehhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHH
Confidence            3455566666666667777755554 6665555556555556666777788889999999 9999999999988888888


Q ss_pred             HHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh-HHh
Q 007932          112 LTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF-SSF  190 (584)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~  190 (584)
                      +++.                    .|+|+.+..-+++|+..+..+.++.+++.+..|++      .+.++.++... .-.
T Consensus       453 ~S~L--------------------~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~------l~at~Q~l~~g~f~G  506 (618)
T KOG3762|consen  453 YSYL--------------------QNPWMVLPIEILQGITHALIWAAIISYASHVAPPG------LRATAQGLLQGIFHG  506 (618)
T ss_pred             HHHh--------------------cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc------chHHHHHHHHHHhcc
Confidence            8887                    67899999999999999999999999999999999      47777775544 447


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      +|-.+|.+++|.+.+.+|-+..|.+.++..++.++.......
T Consensus       507 lG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~  548 (618)
T KOG3762|consen  507 LGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQL  548 (618)
T ss_pred             cCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            899999999999999999899999888887777666555433

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.97  E-value=0.0033  Score=65.66  Aligned_cols=61  Identities=11%  Similarity=0.126  Sum_probs=47.6

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 007932          448 SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLV  508 (584)
Q Consensus       448 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i  508 (584)
                      +.|.++...+.-|+..+.........+.+..|++.|..++|.....-.+|..++..+.-.+
T Consensus       334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3444555556668888888888888888999999999999999888888888877776444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.97  E-value=1.6e-05  Score=86.55  Aligned_cols=178  Identities=13%  Similarity=0.055  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCch----hhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHH-------HHHHHHHH
Q 007932           37 EAFERMAFYGIQSNLVNYLTSQLHEDT----VSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWT-------FTLSSLIY  105 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~-------~~~~~~~~  105 (584)
                      ..+.++.+......++.|.++..+.+.    ....++.+...+...+..++.|++.||+ |||+.       +.+|+++.
T Consensus       278 ~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl-~~r~~~~~~~~k~~~G~~l~  356 (489)
T PRK10207        278 AVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHL-GSKGKDLSMPMKFTLGMFLC  356 (489)
T ss_pred             HHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHH-hhCCCCCCcHHHHHHHHHHH
Confidence            444555555555667777764332221    1234455556667778888889999998 98874       77888887


Q ss_pred             HHHHHHHHHhhh-ccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          106 VLGMILLTMAAS-LKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      +++.+.++.... ...           .....+.+.+....++.|+|.+...|...+++.+..|++      .++.+++.
T Consensus       357 ~~~~~~~~~~~~~~~~-----------~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~------~~g~~~g~  419 (489)
T PRK10207        357 SLGFLTAAAAGMWFAD-----------AQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQH------LMGFILGM  419 (489)
T ss_pred             HHHHHHHHHHHHhhcC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH------HHHHHHHH
Confidence            777654432110 000           001134666778888999999999999999999999988      59999999


Q ss_pred             ehhHHhHhHHHHhhhhhhhhc----------ccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          185 WMFSSFIGALCATLGLVYIQE----------NLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~----------~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      ++...++|..+|..++.....          ...+.+.|...+...++..++++...+
T Consensus       420 ~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        420 WFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998777755421          112455666665555444444444333

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.94  E-value=1.1e-07  Score=102.60  Aligned_cols=182  Identities=14%  Similarity=0.070  Sum_probs=109.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +.+...+....+.....+....+...++.+..+.+..  -.......+...++.+++.++.||+ |||++++++.++.++
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~  328 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAI  328 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-ccccccccccccccc
Confidence            4455555555555444443444444455556666655  2223334455667777788999998 999999999988887


Q ss_pred             HHHHHH-HhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcc-cccccccccccccCCCCChhhhcccceeeeee
Q 007932          108 GMILLT-MAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAG-GTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      +.+.++ .....+.           ..+..+.. .++...+.....+ +..+....+.+|.+|.+      .|+++.++.
T Consensus       329 ~~~~~~~~~~~~~~-----------~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~------~R~~~~~~~  390 (451)
T PF00083_consen  329 CSLILGIIFFLGVS-----------SSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTK------VRSTGIGLS  390 (451)
T ss_pred             cccccccccccccc-----------cccccccc-cceeeeecccccccccccccccccccccccc------ccccccccc
Confidence            776665 1110000           00000111 1222222222222 33466678899999998      599999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      +....+++.+++.+...+.+..+-...|.+.+...++..++.+..
T Consensus       391 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~  435 (451)
T PF00083_consen  391 YAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFF  435 (451)
T ss_pred             cccccccccccccccccccccccccccchhhHHHHHHHHhheeEE
Confidence            999999999999888888877663345555544444444444443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.91  E-value=6.1e-05  Score=82.40  Aligned_cols=178  Identities=12%  Similarity=0.073  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh--hcCCch------hhhhhHHHHHHHHHHHhhhHh----HHHhhcccchhHHHHHHHHH
Q 007932           37 EAFERMAFYGIQSNLVNYLTS--QLHEDT------VSSVRNVNNWSGVVWITPLLG----AYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        37 ~~~~~~~~~~~~~~~~~yl~~--~l~~~~------~~~~~~~~~~~~~~~~~~~~~----G~laD~~~Grk~~~~~~~~~  104 (584)
                      .+.....+|.+..-.+.++..  ..+.+.      ...++..+...+...+..++.    +++.||+ +..+.+.+|+++
T Consensus       281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l  359 (500)
T PRK09584        281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL  359 (500)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence            345556666666666666543  111221      124556666666666666665    6666666 777889999999


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      .+++.+.+....+...           .....+.+.+....++.|+|.+...|...+++.+..|++      .|++.++.
T Consensus       360 ~~l~f~~l~~~~~~~~-----------~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~------~rg~~~g~  422 (500)
T PRK09584        360 CSGAFLVLPLGAKFAN-----------DAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQR------LMGFIMGS  422 (500)
T ss_pred             HHHHHHHHHHHHHhcC-----------CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHH------HHHHHHHH
Confidence            9999888877643211           001134567888999999999999999999999999998      69999998


Q ss_pred             ehhHHhHhHHHHhhhhhhhh----------cccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          185 WMFSSFIGALCATLGLVYIQ----------ENLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~----------~~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      +.....+|..++..+.+...          ...++...|...++..++..++++...+
T Consensus       423 ~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~  480 (500)
T PRK09584        423 WFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAP  480 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777777776655554221          1123567777666654444444444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.00011  Score=79.45  Aligned_cols=163  Identities=16%  Similarity=0.123  Sum_probs=111.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc----ccchhHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADT----YIGRFWTFTLSSL  103 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~----~~Grk~~~~~~~~  103 (584)
                      ..+|...++.++.....|++..++|.|+++..|++..+++.....+.++..++.+++|+++||    . .+|..++....
T Consensus       273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~  351 (495)
T KOG2533|consen  273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLC  351 (495)
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence            456888999999999999999999999998677999999999999999999999999999999    5 66666665554


Q ss_pred             HHHH-HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          104 IYVL-GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       104 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      ++.+ +.+.+....                    .......+.+....+.+...++......+...++.     ++-...
T Consensus       352 ~~~~~g~~~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~  406 (495)
T KOG2533|consen  352 LYAIIGAISLLAAA--------------------VLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTV  406 (495)
T ss_pred             HHHHHHHHHHHhhc--------------------cchHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHH
Confidence            3333 333333321                    12222222333344455555666677777776654     566666


Q ss_pred             eeehhHHhHhHHHH-hhhhhhhhcccchhHHHHHH
Q 007932          183 NWWMFSSFIGALCA-TLGLVYIQENLGWGLGYGIP  216 (584)
Q Consensus       183 ~~~~~~~~~g~~~g-~~~~~~l~~~~~~~~~f~~~  216 (584)
                      +.+..+.+.++.++ ++.-+.....++|...|...
T Consensus       407 ~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~  441 (495)
T KOG2533|consen  407 SAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYML  441 (495)
T ss_pred             hhhhcchhHHHHhhhhhcccccCcchhhhhHHHHH
Confidence            66665665555544 44444455557888888433

>TIGR00788 fbt folate/biopterin transporter

Probab=97.73  E-value=2.5e-05  Score=84.77  Aligned_cols=136  Identities=14%  Similarity=-0.029  Sum_probs=107.0

Q ss_pred             hhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCc
Q 007932           56 TSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTST  135 (584)
Q Consensus        56 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (584)
                      ++.+|+++.+.|.......++..++..+.+++.+|+ +.|+++.++.++.+++.....+..+-..+.          ...
T Consensus       280 ~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~----------~gi  348 (468)
T TIGR00788       280 TQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLA----------FGI  348 (468)
T ss_pred             cccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccc----------cCC
Confidence            467999999999999999999999999999999998 999999999988888775543221000000          000


Q ss_pred             chHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccc
Q 007932          136 SQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLG  208 (584)
Q Consensus       136 ~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  208 (584)
                      ++.+.+...-++.+++.+........++.+..|++      .+++.++++....++|..+++.+++.+.+..|
T Consensus       349 ~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~------~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       349 SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSG------CESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCC------ceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            12233455566778888888888899999999988      58999999999999999999999999988766

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.67  E-value=0.0002  Score=80.45  Aligned_cols=136  Identities=10%  Similarity=0.062  Sum_probs=94.2

Q ss_pred             CccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh----hh-------hc
Q 007932          365 PAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRR----MH-------VI  433 (584)
Q Consensus       365 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~----~~-------~~  433 (584)
                      ..+.+.+...++..++.++..++.++..||+           .+.+|.++++++.++.++.....    .+       ..
T Consensus        69 ~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-----------~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~  137 (633)
T TIGR00805        69 SSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-----------VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNL  137 (633)
T ss_pred             cceeeeehhhHHHHHHHHHHHHhhcccCcce-----------EEEecHHHHHHHHHHHhChHHhcCCccccccccccccc
Confidence            3456667777788888777777766655442           36778888888887776543110    00       00


Q ss_pred             c--ccccC---------------CCCCcc--ceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHH
Q 007932          434 R--VQHIS---------------GPKQIV--PMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGI  494 (584)
Q Consensus       434 ~--~~~~~---------------~~~~~~--~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~  494 (584)
                      .  +...+               .+.+..  ...+..+++.-++.|+|.+...+....++.|.+|++.|+.+.|+.+...
T Consensus       138 ~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~  217 (633)
T TIGR00805       138 SSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIA  217 (633)
T ss_pred             cccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHH
Confidence            0  00000               001111  1234556678889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhhh
Q 007932          495 GVGNFLNSFLVTLVDKV  511 (584)
Q Consensus       495 ~lg~~lg~~l~~~i~~~  511 (584)
                      .+|..+|+.+.+.+...
T Consensus       218 ~iG~~lG~llgg~l~~~  234 (633)
T TIGR00805       218 VFGPAFGYLLGSFCLQI  234 (633)
T ss_pred             HhhhHHHHHHHHHHHhc
Confidence            99999999998887643

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.63  E-value=0.00074  Score=74.20  Aligned_cols=152  Identities=9%  Similarity=-0.060  Sum_probs=107.3

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh---hhhhHHHHHHHHHHHhhhHhHHHhhcccchhH-HHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTV---SSVRNVNNWSGVVWITPLLGAYIADTYIGRFW-TFT   99 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~-~~~   99 (584)
                      .+.+|.+...+.+.+...+.+|.+..+.|......++-|+.   +.++....+.++..++.++.|.+..++ +|-| .++
T Consensus       306 f~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~li  384 (599)
T PF06609_consen  306 FKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQLI  384 (599)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHHH
Confidence            34456777778888889999998888888777777776653   567888889999999999999999887 8755 445


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccc
Q 007932          100 LSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKV  179 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~  179 (584)
                      ++.+++.++...++...                +  .+....+...++.|++.|...........-..|++      ..+
T Consensus       385 ~~~~~~ta~~Gama~~~----------------~--~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~------~ig  440 (599)
T PF06609_consen  385 FGSVLMTAFCGAMAAVR----------------P--DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDE------DIG  440 (599)
T ss_pred             HHHHHHHHHHHHHHHcc----------------C--CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCch------HHH
Confidence            66666665555554431                1  12223455566788888887766666665566665      478


Q ss_pred             eeeeeehhHHhHhHHHHhhhh
Q 007932          180 SFFNWWMFSSFIGALCATLGL  200 (584)
Q Consensus       180 ~~~~~~~~~~~~g~~~g~~~~  200 (584)
                      .+.++....-.+|+.+|..+-
T Consensus       441 ~a~gL~~s~R~~GGsIg~aIy  461 (599)
T PF06609_consen  441 TATGLTGSIRSIGGSIGYAIY  461 (599)
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            888887777778777775533

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.54  E-value=0.021  Score=60.70  Aligned_cols=193  Identities=11%  Similarity=-0.087  Sum_probs=102.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |..+.+...-++...+--++....+.|+.+.+.-+..-.+..-..-.+...++.+.-|.+.||. .|.+++..+.+..-+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~   80 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNL   80 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHH
Confidence            3455666666777777777777777888766543433333333444566667778889999998 999988777653333


Q ss_pred             HH----HHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHH-HhcccccccccccccccCCCCChhhhcccceee
Q 007932          108 GM----ILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIA-IGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       108 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-i~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      +.    .++......+...       .+  +......+++...+.| +..=+......+.=-|+...=..++...+.+..
T Consensus        81 sv~~s~~~~~~l~~~~~~~-------~~--~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~N  151 (432)
T PF06963_consen   81 SVAASCALFLLLLSYPSSS-------SQ--SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMN  151 (432)
T ss_pred             HHHHHHHHHHHHHhCCccc-------cc--cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHH
Confidence            22    2222221111100       00  0011122222222222 222111222222223333211111111355555


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      +...=.-.+--.++|++.|.+....+......+.+...+++...-++.
T Consensus       152 A~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~  199 (432)
T PF06963_consen  152 ATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFL  199 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555566788999999999888888877777766666666654443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.53  E-value=0.00064  Score=74.70  Aligned_cols=187  Identities=15%  Similarity=0.140  Sum_probs=104.8

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      +..+|.....+....+.+..-+....+....+-+..|.+... ............++..++.++.||+ |||+.++.+..
T Consensus       290 ~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~  367 (513)
T KOG0254|consen  290 PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAA  367 (513)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHH
Confidence            345566666666666655544433333333334455665433 4555566777778888889999999 99999999999


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          104 IYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      .+.++.++++...........      ............+..+ ......+..|..+.+..|.+|.+      .|+.+.+
T Consensus       368 ~m~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-v~~f~~g~g~v~w~~~sEifp~~------~r~~~~s  434 (513)
T KOG0254|consen  368 GMSICLVILAVVGVFALYYPN------SSKGAGWLAIVFLCLF-IFSFAIGWGPVPWVIVSEIFPLR------LRSKGAS  434 (513)
T ss_pred             HHHHHHHHHHHHHHHhccCCC------cccchhHHHHHHHHHH-HHHHhcccccchhhhhhccCcHh------HHhhhHH
Confidence            999999888876432210000      0000011111222222 22223333466677889999988      5888877


Q ss_pred             eehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 007932          184 WWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLV  225 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~  225 (584)
                      +......+...+.......+.+..++...|.+.+....+...
T Consensus       435 ~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  435 LAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            765555554444333333333333334455544444444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.49  E-value=0.00031  Score=76.05  Aligned_cols=131  Identities=10%  Similarity=0.037  Sum_probs=83.9

Q ss_pred             chhhHHHHHhhccccchhhh-hhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeeh
Q 007932          372 FVTLSMLLSVPMYDRYFVPF-MRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIF  450 (584)
Q Consensus       372 ~~~l~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (584)
                      .......+..++.+++.||+ +||+           .+.+|.++++++.++.+...                    .+..
T Consensus        53 ~~~~~~~l~~ligG~LaDRilGrrr-----------~iliG~il~~lg~lll~~~~--------------------~~~~  101 (493)
T PRK15462         53 AYCSLVYVTPILGGFLADKVLGNRM-----------AVMLGALLMAIGHVVLGASE--------------------IHPS  101 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCcHH-----------HHHHHHHHHHHHHHHHHHhh--------------------cchh
Confidence            33344455555667777776 5552           36778887777765544220                    0112


Q ss_pred             hhHHHHHHHHHHHHHHhhhceeeeeccCCch--hHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCcc
Q 007932          451 WLLPQYVLLGVADVFNAIGLLEFFYDQSPED--MQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDC  528 (584)
Q Consensus       451 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~  528 (584)
                      .+.....+..+|.++..+...+++.+.+|++  .|.++.+++....++|+.+++.+.+.+.+..                
T Consensus       102 ~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~----------------  165 (493)
T PRK15462        102 FLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY----------------  165 (493)
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh----------------
Confidence            2333444555677777777778888999875  7999999999999999999999998875311                


Q ss_pred             chhHHHHHHHHHHHHHHHHHH
Q 007932          529 HLDYYYGFLMVISILNLGAFF  549 (584)
Q Consensus       529 ~~~~~f~~~~~~~~~~~l~~~  549 (584)
                      ++.+.|.+.++..+++++.++
T Consensus       166 Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        166 SWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             ChHHHHHHHHHHHHHHHHHHH
Confidence            334566666555555444443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.23  E-value=0.047  Score=58.78  Aligned_cols=168  Identities=7%  Similarity=-0.095  Sum_probs=101.9

Q ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc-----hhhhhhHHHHHHHHHHHh-hhHhHHHhhcccchhHHH
Q 007932           25 GKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED-----TVSSVRNVNNWSGVVWIT-PLLGAYIADTYIGRFWTF   98 (584)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~-----~~~~~~~~~~~~~~~~~~-~~~~G~laD~~~Grk~~~   98 (584)
                      ..+|+++...+..++..+.|+...+     +.+.+..+     .....++-....+.+.+. .++.+++++|+ +|++++
T Consensus         4 ~E~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf   77 (472)
T TIGR00769         4 HELKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALF   77 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhH
Confidence            3446666667777777777665544     45666553     245556655555554544 78889999999 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcc-c-cCC--CCCCC-CcCCCCcc------hHHHHHHHHHHHHHhcccccc-ccccccccc
Q 007932           99 TLSSLIYVLGMILLTMAASLK-F-MKP--TCTNG-ICSKTSTS------QIAFFYSSLYIIAIGAGGTKP-NISTFGADQ  166 (584)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~-~-~~~--~~~~~-~~~~~~~~------~~~~~~~~~~~~gi~~g~~~~-~~~~~~~~~  166 (584)
                      .+-...+....++.++....- . +.+  +|.+. ..+++.-.      +.|...+.-+...+-.....+ ..+++..|.
T Consensus        78 ~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi  157 (472)
T TIGR00769        78 YTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQI  157 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            887777777666666552100 0 000  00000 00000000      122222222223333334444 678899999


Q ss_pred             CCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhh
Q 007932          167 FDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQ  204 (584)
Q Consensus       167 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  204 (584)
                      +..+      +-.|.++....+.|+|..+++.+..++.
T Consensus       158 ~t~~------qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       158 TTID------EAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988      5899999999999999999998888876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.22  E-value=0.004  Score=66.43  Aligned_cols=157  Identities=14%  Similarity=0.099  Sum_probs=97.7

Q ss_pred             cccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccc
Q 007932          367 ASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVP  446 (584)
Q Consensus       367 ~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (584)
                      ++......++.++..|..+.+-.+..+-  ++|        ++.|.+++.++.++...++..                 +
T Consensus        74 G~viaa~slg~~i~~liF~~Ws~k~~~~--k~P--------li~s~ii~~~g~llY~~l~~~-----------------~  126 (488)
T KOG2325|consen   74 GLVIAASSLGHAIFSLIFGIWSNKTGSV--KKP--------LIVSFLIAIIGNLLYLALAYV-----------------P  126 (488)
T ss_pred             hHHHHHHHHHHHhcchhhcccccccCCc--ccC--------HHHHHHHHHHHHHHHHHHHhc-----------------c
Confidence            3455557778888888887775443321  223        788999999999888665321                 2


Q ss_pred             e-eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCC-
Q 007932          447 M-SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDN-  524 (584)
Q Consensus       447 ~-~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~-  524 (584)
                      . .-++++...++.|+|.+-.... -.|+.+..-.+.|.++++.......+|.++||.+.+.+....+    .|+.... 
T Consensus       127 ~~~~y~mL~~R~l~Gvg~~n~a~l-R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~----~G~~i~~~  201 (488)
T KOG2325|consen  127 NGVKYLMLVARILTGVGVGNFAVL-RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGE----KGFMILPG  201 (488)
T ss_pred             cchHHHHHHHHHHcCcCcccHHHH-HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcC----CceEEcCc
Confidence            2 4567788888888886544333 4556565555667777776666667777777777666554332    2443222 


Q ss_pred             CCccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007932          525 LNDCHLDYYYGFLMVISILNLGAFFWASSRY  555 (584)
Q Consensus       525 ~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~  555 (584)
                      ...+.|...=|+.+++.++..++..++.++.
T Consensus       202 ~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~  232 (488)
T KOG2325|consen  202 LIFNMYTAPAWLMAILWIIYIVIILFFFKEV  232 (488)
T ss_pred             ceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence            3344455556677777777766666666554

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.21  E-value=0.00039  Score=72.36  Aligned_cols=179  Identities=15%  Similarity=0.138  Sum_probs=120.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhh----HHHH-HHHHHHH----hhhHhHHHhhcccchhHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVR----NVNN-WSGVVWI----TPLLGAYIADTYIGRFWTF   98 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~----~~~~-~~~~~~~----~~~~~G~laD~~~Grk~~~   98 (584)
                      +.+...+..++...+++|+...+...-++ .+|+.+.....    -+.. ..+....    +-.++..+.|++ |||++-
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq  381 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ  381 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence            56667778888888999987776655544 44554443332    1111 1122222    444557779998 999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHH-HHHhcccccccccccccccCCCCChhhhcc
Q 007932           99 TLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYI-IAIGAGGTKPNISTFGADQFDDFNPYERNL  177 (584)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (584)
                      +.+.+++.+..+.++..-+-                ..+...+++.-.+ +-++.-+.....-.+-+|.||.+      .
T Consensus       382 ~~GF~~~~i~~~~~~~~y~~----------------~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar------v  439 (538)
T KOG0252|consen  382 LMGFFIMTIFFFVIAGPYNQ----------------LENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR------V  439 (538)
T ss_pred             HhhHHHHHHHHHHHcCCccc----------------ccccCceeehHHHHHHHHhcCCCceeEEeehhhchHH------H
Confidence            99999888877766654220                0111222222222 33444455566667789999998      5


Q ss_pred             cceeeeeehhHHhHhHHHHhhhhhhhhc-----ccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          178 KVSFFNWWMFSSFIGALCATLGLVYIQE-----NLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       178 r~~~~~~~~~~~~~g~~~g~~~~~~l~~-----~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      |+...++.....-.|+++|...-.++.+     ..+.+..|++.+...++..++-++.
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            9999999999999999999999999988     6788999998888777776654443

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.07  E-value=0.0052  Score=65.39  Aligned_cols=108  Identities=13%  Similarity=0.080  Sum_probs=83.2

Q ss_pred             ccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccce
Q 007932          368 SLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPM  447 (584)
Q Consensus       368 ~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (584)
                      .+......+..+.....+.+.|+++-|           +.+.++++..++..++.++.                     .
T Consensus        66 ~I~s~F~ysYal~qIp~GlLaDrlG~K-----------~vL~l~~l~Wsl~t~L~~fa---------------------~  113 (511)
T TIGR00806        66 EIIPVLPYSHLAVLVPVFLLTDYLRYK-----------PVLVLQALSFVCVWLLLLLG---------------------T  113 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCch-----------HHHHHHHHHHHHHHHHHHHH---------------------H
Confidence            333444445555555555555554544           34777777777777777776                     2


Q ss_pred             eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 007932          448 SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLV  508 (584)
Q Consensus       448 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i  508 (584)
                      +...+.+.-++.|++++... ....++++.+|++.|++++|+.+....+|.++++.+.+.+
T Consensus       114 Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888899999999999 9999999999999999999999999999999999999884

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PTZ00207 hypothetical protein; Provisional

Probab=96.95  E-value=0.0046  Score=68.35  Aligned_cols=126  Identities=10%  Similarity=0.044  Sum_probs=83.5

Q ss_pred             ccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHH
Q 007932          383 MYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVA  462 (584)
Q Consensus       383 ~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~  462 (584)
                      ..+++.|++++|           ..+.++.++.+++.++.+.....               ....+.+.+.+..++.|+|
T Consensus        80 p~G~L~Dr~G~R-----------~vllig~ll~~iG~ll~ala~~~---------------~i~~s~~~l~l~r~l~G~G  133 (591)
T PTZ00207         80 PYSFIYDYLGPR-----------PIFVLSMTVFCLGTLLFALTFQE---------------VIEGSVVRLSVYNGLMTLG  133 (591)
T ss_pred             HHHHHHHHhCcH-----------HHHHHHHHHHHHHHHHHHHHhcc---------------cccCcHHHHHHHHHHHHHH
Confidence            345555555555           34788888888888877765110               0012455566777788999


Q ss_pred             HHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHH
Q 007932          463 DVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISI  542 (584)
Q Consensus       463 ~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~  542 (584)
                      .+..++.....+.+.+| +.||.+.|+......+|+.+.+.+...+..                 .+...+|++++++.+
T Consensus       134 ~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----------------~~~~~~fl~l~vl~~  195 (591)
T PTZ00207        134 CMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----------------DNTSAYFFFLMSFAL  195 (591)
T ss_pred             HHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhHHHHHHHHHHHHH
Confidence            88888877777778787 779999999999999999764444433321                 122356777777777


Q ss_pred             HHHHHHHhhh
Q 007932          543 LNLGAFFWAS  552 (584)
Q Consensus       543 ~~~l~~~~~~  552 (584)
                      +..++.+.+.
T Consensus       196 vv~ll~~~~v  205 (591)
T PTZ00207        196 VVGILAIVFM  205 (591)
T ss_pred             HHHHHHHhhe
Confidence            6655555443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.90  E-value=0.015  Score=60.77  Aligned_cols=185  Identities=15%  Similarity=0.063  Sum_probs=114.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhH-HHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFW-TFTLSSLIYV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~-~~~~~~~~~~  106 (584)
                      +++.++.++.......+|+..+.+..-+ ..-|.+...+|++.....++..++....|.++||. ...| +.++......
T Consensus       266 ~~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt-k~fk~~~~v~~~~~~  343 (480)
T KOG2563|consen  266 RQFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKT-KKFKLTTLVLYLFAL  343 (480)
T ss_pred             ccHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHH
Confidence            4456666666666666666655554333 24577778889999999999999999999999997 5443 4444444444


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      ++. ++....+..               ....+.++..-.+.|.......|+..-+..|..-|..      =+.-.|..+
T Consensus       344 v~~-~~l~~~t~~---------------~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~------E~tSsGll~  401 (480)
T KOG2563|consen  344 VGT-LMLLTCTLF---------------LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVA------EGTSSGLLN  401 (480)
T ss_pred             HHH-HHHHHhhcc---------------CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccC------CcccceeEE
Confidence            442 222111100               1223345555667788888888888888888775543      255556666


Q ss_pred             hHHhHhHHHHhhhhhhhhcccc----hhHHHHHHHHHHHHHHHHHHHhCCceee
Q 007932          187 FSSFIGALCATLGLVYIQENLG----WGLGYGIPTAGLLFSLVIFYIGSPIYRH  236 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~----~~~~f~~~~~~~~~~~~~~~~~~~~~~~  236 (584)
                      ...++-+.+-..+-+...+.++    |...-+.......+..++..+.++++++
T Consensus       402 ~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R  455 (480)
T KOG2563|consen  402 LSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR  455 (480)
T ss_pred             eehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence            6667766666677777776665    4433344444455555555666665544

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.85  E-value=0.011  Score=47.33  Aligned_cols=73  Identities=8%  Similarity=-0.018  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhh
Q 007932           42 MAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAA  116 (584)
Q Consensus        42 ~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~  116 (584)
                      ++.+.+++.+| .+.++.++|..+.+++-+...+++.++.+...++.++. .+++.+..+++...+..+.+++..
T Consensus         6 igRFayTplLP-~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~   78 (85)
T PF06779_consen    6 IGRFAYTPLLP-LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTH   78 (85)
T ss_pred             hHHHHHHhHhH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555666555 56789999999999999999999999999999999997 889999999999999988888864

Note that many members are hypothetical proteins.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.83  E-value=0.013  Score=53.22  Aligned_cols=103  Identities=15%  Similarity=0.095  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHH
Q 007932           69 NVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYII  148 (584)
Q Consensus        69 ~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (584)
                      -.++......+.+++.+.+.+++ |.|+.++++.+.+.+-......                     ++.+.++.+-.+.
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~---------------------~~~~~l~~~s~l~   99 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFY---------------------PNSYTLYPASALL   99 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHh---------------------hhHHHHHHHHHHH
Confidence            34455666777888888899998 9999999998877754433322                     4567789999999


Q ss_pred             HHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhh
Q 007932          149 AIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLG  199 (584)
Q Consensus       149 gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~  199 (584)
                      |++.+..+.....++.+..+++      .+++..+++-...+.+.+.|.++
T Consensus       100 G~~~a~lW~aqg~ylt~~s~~~------~~~~~~~ifw~i~~~s~i~G~~~  144 (156)
T PF05978_consen  100 GFGAALLWTAQGTYLTSYSTEE------TIGRNTGIFWAIFQSSLIFGNLF  144 (156)
T ss_pred             hhhhHHhhHhhhHHHHHcCCHH------HHhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999887766      46766666555555555555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=96.80  E-value=0.0064  Score=66.94  Aligned_cols=129  Identities=14%  Similarity=0.097  Sum_probs=97.2

Q ss_pred             ccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccce
Q 007932          368 SLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPM  447 (584)
Q Consensus       368 ~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (584)
                      ..+.+..++.+++..+.+.+.|+++||.           .+..++++..++-+..++.                     .
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~-----------~~~~~~~~~~i~~~~~a~a---------------------~  169 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKP-----------VLLVSLLLFIIFGILTAFA---------------------P  169 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHH-----------HHHHHHHHHHHHHHHHHHh---------------------C
Confidence            4455666777777777777777767773           3666777776666555555                     4


Q ss_pred             eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCc
Q 007932          448 SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLND  527 (584)
Q Consensus       448 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~  527 (584)
                      +++.+++.-++.|++..........++.|..+++.|+.+..+ ......++.+++....++..        +|       
T Consensus       170 ~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W-------  233 (521)
T KOG0255|consen  170 NYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW-------  233 (521)
T ss_pred             cHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH-------
Confidence            677788888999999999999999999999999999999999 77778888888888877652        33       


Q ss_pred             cchhHHHHHHHHHHHHHHHH
Q 007932          528 CHLDYYYGFLMVISILNLGA  547 (584)
Q Consensus       528 ~~~~~~f~~~~~~~~~~~l~  547 (584)
                         .+.+++..+..++..+.
T Consensus       234 ---r~~~~~~~~~~~~~~~~  250 (521)
T KOG0255|consen  234 ---RWLFWIISIPSGLFLLL  250 (521)
T ss_pred             ---HHHHHHHHHHHHHHHHH
Confidence               45566666666665444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.50  E-value=0.23  Score=51.07  Aligned_cols=159  Identities=11%  Similarity=0.062  Sum_probs=86.1

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhh-----cccchhHH
Q 007932           23 KTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIAD-----TYIGRFWT   97 (584)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD-----~~~Grk~~   97 (584)
                      .+...+.+..+++......+ -++.....|..+ +..|.|-++.+.....+  -=+-.-+++..+.|     |+ ||||.
T Consensus        26 ~~~d~~~illLl~LYllQGi-P~GL~~~iP~lL-~ak~vSyt~~a~fS~ay--~P~sLKllWaPiVDs~y~k~~-Grrks  100 (510)
T KOG3574|consen   26 LKGDRSSILLLLFLYLLQGI-PLGLIGAIPLLL-QAKGVSYTSQAIFSFAY--WPFSLKLLWAPIVDSVYSKRF-GRRKS  100 (510)
T ss_pred             hhhhhhhHHHHHHHHHHcCC-chhHhhhhHHHh-cCCCcchhhhhhhhhhh--hHHHHHHHHHhhhHHHHHHhh-ccccc
Confidence            34555666666666655554 466666555444 46677776665333222  12234567788888     88 99997


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcc
Q 007932           98 FTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNL  177 (584)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (584)
                      -++-+ -+.+|.++..++...+.   --   +.|+.+ ++........++.-+.++.-.-+.-...-....++      .
T Consensus       101 Wvvp~-q~llG~~mllLs~~v~~---~~---g~ng~~-p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e------~  166 (510)
T KOG3574|consen  101 WVVPC-QYLLGLFMLLLSYLVDR---GL---GGNGGL-PNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRE------N  166 (510)
T ss_pred             eeeeh-HHHHHHHHHHHhhCCCc---cc---ccCCCC-cchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHh------h
Confidence            65543 22334444444422221   00   112222 33333333334444454444444444444555555      3


Q ss_pred             cceeeeeehhHHhHhHHHHhhhh
Q 007932          178 KVSFFNWWMFSSFIGALCATLGL  200 (584)
Q Consensus       178 r~~~~~~~~~~~~~g~~~g~~~~  200 (584)
                      .+-+...+..+.+.|.+++..+-
T Consensus       167 lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  167 LGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             cCchhHHHHHHHhhhHHhhccee
Confidence            78888888888899988885543

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.47  E-value=0.012  Score=60.14  Aligned_cols=135  Identities=12%  Similarity=0.074  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHh-hhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccc-hhHHHHHHHHHHHHHHHHHHHhhhccccC
Q 007932           45 YGIQSNLVNYL-TSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIG-RFWTFTLSSLIYVLGMILLTMAASLKFMK  122 (584)
Q Consensus        45 ~~~~~~~~~yl-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~G-rk~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (584)
                      |....+...++ ...+|+++.+.|-+.+...+.+.+.+..-....||..| -+-.+..++..+.-..+++..+       
T Consensus       277 ~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~-------  349 (451)
T KOG2615|consen  277 FSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA-------  349 (451)
T ss_pred             HHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc-------
Confidence            33333344444 46799999999999999999999999998999999833 3444444444444444444544       


Q ss_pred             CCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhh
Q 007932          123 PTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVY  202 (584)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~  202 (584)
                                   ...-.++.+..+-.+..+...++...++....|.+      +||.+.|+......++-++||.++|.
T Consensus       350 -------------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~------qrG~~~Gi~~Sl~alaRaiGPlv~g~  410 (451)
T KOG2615|consen  350 -------------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS------QRGTLNGIFRSLGALARAIGPLVSGV  410 (451)
T ss_pred             -------------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc------cchHHHHHHHHHHHHHHHhhhhhhhe
Confidence                         23455788888888888888899999999999988      69999999999999999999999988


Q ss_pred             hhc
Q 007932          203 IQE  205 (584)
Q Consensus       203 l~~  205 (584)
                      +..
T Consensus       411 i~~  413 (451)
T KOG2615|consen  411 IFS  413 (451)
T ss_pred             eEE
Confidence            765

>PRK03612 spermidine synthase; Provisional

Probab=96.41  E-value=0.099  Score=57.36  Aligned_cols=169  Identities=14%  Similarity=0.048  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHH-HHHHHH-HHHHHH
Q 007932           35 GYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTL-SSLIYV-LGMILL  112 (584)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~-~~~~~~-~~~~~~  112 (584)
                      ...+...++..++-....-.++..+|-+....+.+++.+..+..+++.++|+++++. -|+...+- +..+.. ++..++
T Consensus        21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll   99 (521)
T PRK03612         21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALIL   99 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            333444454444555555666777899999999999999999999999999987554 33322211 111111 111111


Q ss_pred             HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHh
Q 007932          113 TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIG  192 (584)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  192 (584)
                      ...... +              ......++...++.++..|+..|....+..+....+       -++..+..+....+|
T Consensus       100 ~~~~~~-~--------------~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~~~-------~g~~~g~ly~~ntlG  157 (521)
T PRK03612        100 YAAFAF-Q--------------GLSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRDQH-------LGHNVATVLAADYLG  157 (521)
T ss_pred             HHHHHH-H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------hhhhhhhhHhHHhHH
Confidence            111100 0              011122334445567888888787776665433211       355567777788888


Q ss_pred             HHHHhhhhhhhhc-ccchhHHHHHHHHH-HHHHHHH
Q 007932          193 ALCATLGLVYIQE-NLGWGLGYGIPTAG-LLFSLVI  226 (584)
Q Consensus       193 ~~~g~~~~~~l~~-~~~~~~~f~~~~~~-~~~~~~~  226 (584)
                      +++|.++.+++.- ..|-....++.+.+ .++++++
T Consensus       158 a~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~  193 (521)
T PRK03612        158 ALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF  193 (521)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            8888888887654 56644333333333 3444333

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.37  E-value=0.00055  Score=75.16  Aligned_cols=149  Identities=11%  Similarity=0.082  Sum_probs=2.9

Q ss_pred             ccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH----H
Q 007932          352 TTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVE----V  427 (584)
Q Consensus       352 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~----~  427 (584)
                      ...++.++ --+...+.+....=++.++...+..++    ++|.       ++.+.+..|.++++++.+++.+-+    .
T Consensus        27 ttiErRF~-l~S~~~G~i~s~~di~~~~~~~~vsy~----g~~~-------hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   27 TTIERRFG-LSSSQSGLISSSYDIGSLVVVLFVSYF----GGRG-------HRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHH----hhhc-------CCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            34455432 112344455555666666666666655    4442       334557888888888887765421    0


Q ss_pred             hhhhhc--------cccccC---------------CCC--CccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchh
Q 007932          428 RRMHVI--------RVQHIS---------------GPK--QIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDM  482 (584)
Q Consensus       428 ~~~~~~--------~~~~~~---------------~~~--~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~  482 (584)
                      +.....        .+...+               .++  .........+++..++.|+|.....+...+|+.|-++++.
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence            000000        000111               001  1122345667778889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Q 007932          483 QSLGTTFFTSGIGVGNFLNSFLVTLVDKVT  512 (584)
Q Consensus       483 rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~  512 (584)
                      -+.+.|+.+....+|..+|..+.+...+.+
T Consensus       175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~y  204 (539)
T PF03137_consen  175 SPLYIGILYAMSILGPALGFLLGSFCLRIY  204 (539)
T ss_dssp             ------------------------------
T ss_pred             CccchhhhhHHhhccHHHHHHHHHHHHhce
Confidence            999999999999999999988887765433

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.26  E-value=0.011  Score=63.68  Aligned_cols=128  Identities=16%  Similarity=0.116  Sum_probs=106.8

Q ss_pred             HHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhH-HHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007932           50 NLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGA-YIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNG  128 (584)
Q Consensus        50 ~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G-~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (584)
                      .++.|+...++++..+.+...+..++...++..+.. .+.-.+ |-|+++.+|++...+...+.+++             
T Consensus       263 ~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~~~~~~~~~~af~-------------  328 (463)
T KOG2816|consen  263 VLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLLSEFLQLLLFAFA-------------  328 (463)
T ss_pred             EEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHHHHHHHHHHHHHh-------------
Confidence            345678889999999999999999999999999988 566666 99999999999999999999998             


Q ss_pred             CcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhc
Q 007932          129 ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE  205 (584)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  205 (584)
                             ++.|+++....+.++ .+...|...++++.+.+++      ++++++++......+...++|.+-+.+..
T Consensus       329 -------~~~w~~~~~~v~~~~-~~~~~pa~~s~~s~~v~~~------e~g~v~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  329 -------TETWMMFAAGVVVAL-AGIVFPAIRAFASILVSPE------EQGKVFGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             -------ccchhhhHHHHHHHh-hcchhHHHHhHHHhhcccc------cccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence                   456667777665554 4666788999999999888      49999999999999999999887777643

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.25  E-value=0.017  Score=64.89  Aligned_cols=65  Identities=29%  Similarity=0.625  Sum_probs=59.8

Q ss_pred             CccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007932          443 QIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTL  507 (584)
Q Consensus       443 ~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~  507 (584)
                      .+++++.+|.++.+++.+.||.+...+..++.++++|+++|+...+++.+...+|+.+...+...
T Consensus       559 ~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~  623 (654)
T TIGR00926       559 SVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPPNMKSVLQALWLLTVAIGNLIVVVIAEF  623 (654)
T ss_pred             CCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46779999999999999999999999999999999999999999999999999999998777533

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.12  E-value=0.029  Score=62.69  Aligned_cols=106  Identities=11%  Similarity=0.000  Sum_probs=74.3

Q ss_pred             ehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCcc
Q 007932          449 IFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDC  528 (584)
Q Consensus       449 ~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~  528 (584)
                      +..++...++.|+|....++...+|+.|-+-++.-+.+.|+.+++..+|-++|..+.......+-+.+...-.. +.++.
T Consensus       237 ~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i-t~~DP  315 (735)
T KOG3626|consen  237 FLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI-TPTDP  315 (735)
T ss_pred             HHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC-CCCCc
Confidence            34566677888999999999999999999999999999999999999999999999888776554331111111 11122


Q ss_pred             chhH----HHHHHHHHHHHHHHHHHhhhhcc
Q 007932          529 HLDY----YYGFLMVISILNLGAFFWASSRY  555 (584)
Q Consensus       529 ~~~~----~f~~~~~~~~~~~l~~~~~~~~~  555 (584)
                      .+..    -|.+.+.+.++..+.++++-++.
T Consensus       316 rWIGAWWlGFLi~g~~~~~~a~p~f~fPk~l  346 (735)
T KOG3626|consen  316 RWIGAWWLGFLICGALLLFSAVPLFFFPKEL  346 (735)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhCcccC
Confidence            2222    25566777777766666554433

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=95.67  E-value=0.007  Score=64.15  Aligned_cols=117  Identities=15%  Similarity=0.165  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCch--hH
Q 007932          406 QRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPED--MQ  483 (584)
Q Consensus       406 ~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~--~r  483 (584)
                      +.+..|.++++++.++.+...                   ..+...+.+.+++.++|.++.-+....++.+++|++  .|
T Consensus        93 ~tI~lGail~~iGh~~L~~~~-------------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dprr  153 (498)
T COG3104          93 RTIVLGAILMAIGHLVLAISS-------------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRR  153 (498)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-------------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCccc
Confidence            458889999999998877541                   023446777888888999999999999999998854  46


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 007932          484 SLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVY  557 (584)
Q Consensus       484 g~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~  557 (584)
                      -.+.+++....++|+++++.+.+++....                ++...|...++-+.++++.++...++.+.
T Consensus       154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~~----------------g~~~gF~~aavGm~~gl~~f~~~~r~~~~  211 (498)
T COG3104         154 DGGFTLFYMGINIGSLIAPIITGLLAINY----------------GWHVGFGLAAVGMIIGLVIFLLGRRHVKG  211 (498)
T ss_pred             CCCccEEEEEeehHHHHHHHHHHHHHHhh----------------CHHHHHHHHHHHHHHHHHHHHHccchhcC
Confidence            66777888888899999999998876322                34556777777777776666665444443

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.91  E-value=0.077  Score=55.65  Aligned_cols=124  Identities=16%  Similarity=0.163  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCch---h
Q 007932          406 QRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPED---M  482 (584)
Q Consensus       406 ~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~---~  482 (584)
                      +.+.+|.++..++.+++.........            ....+...+...+.+.++|.++.-|+...+..|+++++   .
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~   69 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSL------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSR   69 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchh------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhh
Confidence            34778888888888875554211000            11234566778888999999999999999999998865   5


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 007932          483 QSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRYVY  557 (584)
Q Consensus       483 rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~  557 (584)
                      |..+...+....++|..++..+.+++.+.                -++...|.+.++..+++.+.++.-.++++.
T Consensus        70 ~~~~F~~fY~~in~G~~~~~~~~~~i~~~----------------~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~  128 (372)
T PF00854_consen   70 RDSFFNWFYWGINIGSLFSPTLVPYIQQN----------------YGWFLGFGIPAIGMLLALIVFLSGRKRYRK  128 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHC----------------S-HHHHHHHHHHHHHHHHHHHHCCCCTT--
T ss_pred             hhhhHHHHHHHHhhhhHhhcccchhhccc----------------cchhhhhhHHHHHHHHHHHHHHhCCcCCcC
Confidence            66667777888889999988887777521                244556777777777776666654444433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.77  E-value=0.081  Score=51.99  Aligned_cols=91  Identities=11%  Similarity=0.091  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhH
Q 007932          404 MLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQ  483 (584)
Q Consensus       404 ~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r  483 (584)
                      +...+.+|.+...++..........+              ..+.+.|.+....++.+.+....+........+.+| +.|
T Consensus        65 p~~~l~iG~~~~~~GY~~~~l~~~~~--------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~R  129 (250)
T PF06813_consen   65 PWVVLLIGAVLGFVGYGLLWLAVSGR--------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSR  129 (250)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCc--------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-ccc
Confidence            33457888888888887766553211              111344445555556666666655555555557888 579


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhh
Q 007932          484 SLGTTFFTSGIGVGNFLNSFLVTLVD  509 (584)
Q Consensus       484 g~~~gi~~~~~~lg~~lg~~l~~~i~  509 (584)
                      |++.|+.....++++.+-..+...+.
T Consensus       130 G~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  130 GTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             CceehhhhHHHHhHHHHHHHHHHHHc
Confidence            99999999998888888777665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.43  E-value=0.35  Score=51.56  Aligned_cols=137  Identities=9%  Similarity=-0.085  Sum_probs=104.5

Q ss_pred             HHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 007932           47 IQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCT  126 (584)
Q Consensus        47 ~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (584)
                      .-..+..|+..+ |+++...|..-+...+....+.....++-+|+ |..|.=+++.....++..++..+...+.      
T Consensus       277 f~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~------  348 (432)
T PF06963_consen  277 FGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPG------  348 (432)
T ss_pred             CcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCC------
Confidence            345566788767 99999999999999999999999999999999 9999999998888777766665532221      


Q ss_pred             CCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhh
Q 007932          127 NGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLV  201 (584)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  201 (584)
                          ++....+...++.+..+.=+|.=++.-+...++.|..|++      +|+...+..+...++.-.+-..++-
T Consensus       349 ----~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~------~Rg~v~gvq~sl~~lf~ll~~~~~i  413 (432)
T PF06963_consen  349 ----SPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPES------ERGAVSGVQNSLQSLFELLSFVLTI  413 (432)
T ss_pred             ----CCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH------HhhHHHHHHHHHHHHHHHHHHHHHh
Confidence                0001234455555555555777677788899999999987      5999999999999998887755443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=93.74  E-value=2.1  Score=42.96  Aligned_cols=49  Identities=12%  Similarity=0.236  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHH
Q 007932          457 VLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLV  505 (584)
Q Consensus       457 ~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~  505 (584)
                      ++-|+-.+......+--+.++.+++.|..+++.....-.+|-.+...+.
T Consensus       350 ~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la  398 (409)
T KOG3880|consen  350 LFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA  398 (409)
T ss_pred             HHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence            3345544444555555566778889999999987776666666666554

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=93.41  E-value=4.2  Score=39.90  Aligned_cols=56  Identities=13%  Similarity=0.137  Sum_probs=39.4

Q ss_pred             ccceeeeeehhHHhHhHHHH--hhhhh-hhh--cccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          177 LKVSFFNWWMFSSFIGALCA--TLGLV-YIQ--ENLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       177 ~r~~~~~~~~~~~~~g~~~g--~~~~~-~l~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      +|+....+..++.|+|+++.  |.+.+ -..  ....|++.+.+.+++.++-++++.+.-+
T Consensus         3 ~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~ifGk   63 (267)
T PF07672_consen    3 KKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIFGK   63 (267)
T ss_pred             ccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            68899999999999999987  33332 111  1235999988888777777766666544

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.23  E-value=0.65  Score=49.70  Aligned_cols=143  Identities=15%  Similarity=0.073  Sum_probs=90.0

Q ss_pred             HHHHHHHHh--hhhcCCchhhhhhH-HHHHHHHHHHhhhHhHHHhhcc--cchhHHHHHHHHHHHHHHHHHHHhhhccc-
Q 007932           47 IQSNLVNYL--TSQLHEDTVSSVRN-VNNWSGVVWITPLLGAYIADTY--IGRFWTFTLSSLIYVLGMILLTMAASLKF-  120 (584)
Q Consensus        47 ~~~~~~~yl--~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~G~laD~~--~Grk~~~~~~~~~~~~~~~~~~~~~~~~~-  120 (584)
                      +....|..+  +..++.+....-.+ ......+..++.++.+.+.+|.  +||++++.++..+..++.++.-+..  |. 
T Consensus       259 ~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~--p~d  336 (461)
T KOG3098|consen  259 WISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSF--PND  336 (461)
T ss_pred             HHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccc--ccc
Confidence            344444333  33455444432222 2223444555566667776552  3899999999998888876666542  22 


Q ss_pred             --cCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhh
Q 007932          121 --MKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATL  198 (584)
Q Consensus       121 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~  198 (584)
                        +.+|-   +-.....++.....+.-++.|++........+.++++.+|++       |..+++++.+...++..++..
T Consensus       337 ap~~~t~---~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~-------~~~~fsi~kfyq~~~s~v~~f  406 (461)
T KOG3098|consen  337 APLRPTD---SPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD-------RAQAFSLFKFYQSVASCVAFF  406 (461)
T ss_pred             CCCCCCc---ccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHHHHHHHHHhh
Confidence              12211   111122345556677778899999999999999999999644       889999988888888877644


Q ss_pred             hhh
Q 007932          199 GLV  201 (584)
Q Consensus       199 ~~~  201 (584)
                      ...
T Consensus       407 ~~~  409 (461)
T KOG3098|consen  407 FSP  409 (461)
T ss_pred             hhh
Confidence            443

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=92.97  E-value=16  Score=39.53  Aligned_cols=60  Identities=13%  Similarity=0.117  Sum_probs=48.6

Q ss_pred             hhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 007932          451 WLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDK  510 (584)
Q Consensus       451 ~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~  510 (584)
                      .++...++..+.....+....++-.+++.|..-|++|.+.|+..++|+.--..+.-...+
T Consensus       407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD  466 (544)
T PF13000_consen  407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVD  466 (544)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhh
Confidence            345566777778888899999999999999999999999999999998766655544443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=92.90  E-value=15  Score=39.32  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=50.8

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 007932          448 SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTL  507 (584)
Q Consensus       448 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~  507 (584)
                      +-++.++..+++|+..+........+..+.++++.|..+..+..+.-.+|-.+|..+.-.
T Consensus       371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~  430 (437)
T TIGR00939       371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFL  430 (437)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666778899999999999999999999999999999999998888888888777533

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=92.69  E-value=0.53  Score=49.68  Aligned_cols=182  Identities=12%  Similarity=-0.018  Sum_probs=100.4

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCch----------------hhhhhHHHHHHHHHHHhhhHh
Q 007932           22 SKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-LHEDT----------------VSSVRNVNNWSGVVWITPLLG   84 (584)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~~~----------------~~~~~~~~~~~~~~~~~~~~~   84 (584)
                      ..+.+++..+.++.+.++.+++.+....+.+-++-++ ++=|+                ..-.|-..++++...+.+...
T Consensus       273 ~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins~~lgi~S~~~  352 (498)
T KOG0637|consen  273 ALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNSIVLGIYSLLV  352 (498)
T ss_pred             hHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence            4467889999999999999999888877777666432 22221                111244556777888899999


Q ss_pred             HHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC-CcCCCCcchHHHHHHHHHHHHHhcccccccccccc
Q 007932           85 AYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNG-ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFG  163 (584)
Q Consensus        85 G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~  163 (584)
                      -++.||+ |-|+.++.+...+.++..+.+...+......++.+. ...++...-.+....-.-..++-......+..+..
T Consensus       353 ~~l~~~~-g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~  431 (498)
T KOG0637|consen  353 EKLSRKF-GTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAITFSIPFALA  431 (498)
T ss_pred             HHHHHhc-CcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCccccccccccccc
Confidence            9999999 966666666655555555555443222211111111 11111111111121112222332322222222222


Q ss_pred             cccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcccc
Q 007932          164 ADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENLG  208 (584)
Q Consensus       164 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~  208 (584)
                      +......    +..+|.-.++.+....+-.++.....|.+.+..|
T Consensus       432 s~~~~~s----g~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G  472 (498)
T KOG0637|consen  432 SIEIGNS----GLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFG  472 (498)
T ss_pred             cccccCc----cCCCCceeeeeeeeeeehhheeeccccchhhhcC
Confidence            2111111    1145777778888888888887777777766655

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=91.32  E-value=0.59  Score=49.11  Aligned_cols=63  Identities=13%  Similarity=0.006  Sum_probs=53.4

Q ss_pred             chHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhh
Q 007932          136 SQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQ  204 (584)
Q Consensus       136 ~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  204 (584)
                      ++.+..++.-+..|+..|+.+.+....+.|..|++      +|..+++....+-.+|..++..++-++.
T Consensus       333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~------~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPE------DREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            45777777888889999999999999999988877      5999999999999999998877776553

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=90.71  E-value=2  Score=43.48  Aligned_cols=120  Identities=17%  Similarity=0.198  Sum_probs=74.9

Q ss_pred             ccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHH
Q 007932           22 SKTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLS  101 (584)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~  101 (584)
                      .++..-|+++.+-...++...++-+... +......++|    +.++  +.........+++.+.+..++ |-|+++.++
T Consensus        23 ~~~~~~knv~i~s~~fl~~f~a~~gl~n-lq~~vn~~lg----~~sl--~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~la   94 (390)
T KOG3097|consen   23 KRLGILKNVLILSIAFLLTFTAYLGLQN-LQTSVNYDLG----TVSL--GALYLSLIDSSMFMPLLIRFL-GTKWTMVLA   94 (390)
T ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHH-HHHHHhcCcc----cchh--hhhhHHHHHHHHHHHHHHHHH-hhHHHHHHH
Confidence            3445557778877777777766665533 3333222222    2221  223344445566666788887 999999887


Q ss_pred             HHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCC
Q 007932          102 SLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDF  170 (584)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~  170 (584)
                      ...+....     ++++                .+....++.+-...|++.+..+..--+++++.-...
T Consensus        95 v~~Y~lyi-----A~Nl----------------~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen   95 VFPYALYI-----AANL----------------EPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             HHHHHHHH-----Hhhc----------------chhHHhhccHHHhhccccccccccCcceecHHHHHH
Confidence            65544332     2221                245666788888999999999999888888876543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=90.06  E-value=1.5  Score=39.66  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=52.6

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 007932          448 SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLV  508 (584)
Q Consensus       448 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i  508 (584)
                      +.+.+++.-++.|++.....+..-.++.+...++.+++..+++....+.+.++|..+.-.+
T Consensus        88 ~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen   88 NSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788889999999999999888998999999999999999999998888887776444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=89.32  E-value=0.38  Score=48.90  Aligned_cols=149  Identities=12%  Similarity=0.087  Sum_probs=81.4

Q ss_pred             HHHHHHhh-hhcCCchhhhh---hHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCC
Q 007932           49 SNLVNYLT-SQLHEDTVSSV---RNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPT  124 (584)
Q Consensus        49 ~~~~~yl~-~~l~~~~~~~~---~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (584)
                      +++.+|+. .+.|++..+..   .-+..|+....+.+.+  .+.|.. -=|+++++-.+.......++.+.         
T Consensus        25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvF--lLTD~l-rYKPvivlq~ls~v~~w~~lv~g---------   92 (433)
T KOG3810|consen   25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVF--LLTDYL-RYKPVVVLQALSGVPVWIMLVFG---------   92 (433)
T ss_pred             CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHH--HHhhhh-hcceeeeeeccchhHHHHHHHhc---------
Confidence            45556665 45667666543   1233344444444444  488987 44555555555555555566655         


Q ss_pred             CCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhh
Q 007932          125 CTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQ  204 (584)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  204 (584)
                                 ++.+.+-+.-++.|...+. .-+-++++=+..+++      .+.++.+......-.|...|...+-.+.
T Consensus        93 -----------~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~------~Yqrvt~y~RaA~L~g~~~g~vlaQlLv  154 (433)
T KOG3810|consen   93 -----------PSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPE------MYKRVTGYCRAAFLVGKFVGSVLAQLLV  154 (433)
T ss_pred             -----------CCchheeeehhhcChHHHH-HHhhhheeeeecCHH------HHHHHHHHhHHHHHHHhHHHhHHHHHHh
Confidence                       3344444444455544333 233455555666665      4777788888787778877766665554


Q ss_pred             cc--cchhHHHHHHHHHHHHHHHHH
Q 007932          205 EN--LGWGLGYGIPTAGLLFSLVIF  227 (584)
Q Consensus       205 ~~--~~~~~~f~~~~~~~~~~~~~~  227 (584)
                      ..  .++...-.+......++.+..
T Consensus       155 s~~~~sy~~LN~ISL~~~~ia~~~A  179 (433)
T KOG3810|consen  155 SLETLSYTTLNYISLAEVTIAVLLA  179 (433)
T ss_pred             hhcccchhhhchhhHHHHHHHHHHH
Confidence            32  334444445554444444443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=89.27  E-value=32  Score=36.25  Aligned_cols=58  Identities=17%  Similarity=0.154  Sum_probs=49.5

Q ss_pred             eehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHH
Q 007932          448 SIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLV  505 (584)
Q Consensus       448 ~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~  505 (584)
                      +-+|.+....++|+..+-.......++.+.+|++++..+..+.......|-+.|..+.
T Consensus       342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s  399 (406)
T KOG1479|consen  342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS  399 (406)
T ss_pred             CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            4567788888999999999999999999999999999998888888777777776664

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=88.93  E-value=2.8  Score=44.97  Aligned_cols=113  Identities=12%  Similarity=0.108  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccC---CchhHH
Q 007932          408 LGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS---PEDMQS  484 (584)
Q Consensus       408 i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~---P~~~rg  484 (584)
                      +.++.++.+++...++.....                 ..+.......+++..+|..+.....-+.+.|..   |.+ ||
T Consensus        62 ~~i~~~~~~~~~~~~~~~~~~-----------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g  123 (433)
T PF03092_consen   62 MIIGWLLGAVSALVLALLPAS-----------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RG  123 (433)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-----------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hH
Confidence            566666665555555544210                 122334445556677788877777777776664   444 88


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932          485 LGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSR  554 (584)
Q Consensus       485 ~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~  554 (584)
                      ..++.......+|+.++..+.+...+..                +....|.+.+.+..+..+..+++.++
T Consensus       124 ~lqS~~~~~~~~G~lv~~~l~G~l~~~~----------------~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  124 DLQSFVWGVRSVGSLVGSLLSGPLLDSF----------------GPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhcC----------------CCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            8888888889999999988876654211                22233566666555555545555554

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.34  E-value=1.6  Score=42.94  Aligned_cols=176  Identities=11%  Similarity=0.013  Sum_probs=98.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchh--HHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRF--WTFTLSSLIY  105 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk--~~~~~~~~~~  105 (584)
                      |...+-.+-..+|...+-.+..|.|.--.++   ...--|.+.+.+.....+++-+..++..|- ..|  ..+.+..+..
T Consensus       249 ki~LLG~iqsLFE~smytFVFLWTPaLspn~---e~iPhGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs  324 (454)
T KOG4332|consen  249 KIALLGAIQSLFEGSMYTFVFLWTPALSPND---EEIPHGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVS  324 (454)
T ss_pred             HHHHHHHHHHHHhhhhheeeeeecccCCCCc---ccCCchhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHH
Confidence            4445555667777766555555544221111   112235666666666666655555554443 111  2333333332


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .+. +++.+.++.            .+|+..++..-+.+.++.-...|..+|.+.-+=.+..|++      .|+..++++
T Consensus       325 ~a~-l~Lpilt~~------------vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEe------arstimNfF  385 (454)
T KOG4332|consen  325 IAA-LLLPILTSS------------VSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEE------ARSTIMNFF  385 (454)
T ss_pred             HHH-HHHHHHHhc------------cCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHH------HHhhhhhhe
Confidence            222 233332211            1122233444566777788889999999999999999988      499999999


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVI  226 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~  226 (584)
                      ..-.|+-..++-...-.=....+-|.+|.++.+...++.+.
T Consensus       386 RvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  386 RVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             echhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHH
Confidence            98888877765322111112244567787777665555443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=87.63  E-value=45  Score=35.99  Aligned_cols=168  Identities=8%  Similarity=-0.102  Sum_probs=96.6

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCc---hhhhhhHHHHHHH-HHHHhhhHhHHHhhcccchhHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHED---TVSSVRNVNNWSG-VVWITPLLGAYIADTYIGRFWTFT   99 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~---~~~~~~~~~~~~~-~~~~~~~~~G~laD~~~Grk~~~~   99 (584)
                      +..++...-+.+..++..+.++..-.     +.+.+.++   +.....+-...-. ++.+..++.+++.+++ -|.+++.
T Consensus        23 r~E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~   96 (509)
T COG3202          23 RYELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFY   96 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHH
Confidence            34556666666666666555443322     35555544   3334444444444 5667788889999998 9999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccc-cCCCCCCC------CcCCCCc-------chHHHHHHHHHHHHHhcccccc-ccccccc
Q 007932          100 LSSLIYVLGMILLTMAASLKF-MKPTCTNG------ICSKTST-------SQIAFFYSSLYIIAIGAGGTKP-NISTFGA  164 (584)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~-------~~~~~~~~~~~~~gi~~g~~~~-~~~~~~~  164 (584)
                      +.+..+....+++++...+.. ..|.  ++      ....++.       -+.|...+.-+..-+=.....+ ..+....
T Consensus        97 ~~~~~F~~fF~LFa~Vi~P~~~~~hp--~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faN  174 (509)
T COG3202          97 IILGFFLGFFALFAFVIYPYKDILHP--DPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFAN  174 (509)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCC--CHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888887643110 0000  00      0000100       0112111111111111111111 3456677


Q ss_pred             ccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhc
Q 007932          165 DQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQE  205 (584)
Q Consensus       165 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  205 (584)
                      |.+..+      +-.|+++.++...|++..++..+..++.+
T Consensus       175 eitt~~------eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         175 EITTIE------EAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HhhhHH------HhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888777      47999999999999999999888888865

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=85.31  E-value=22  Score=38.55  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHh-hhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 007932          454 PQYVLLGVADVFNA-IGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDK  510 (584)
Q Consensus       454 ~~~~l~g~~~~~~~-~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~  510 (584)
                      ..|+...+-...+. -.-|.++.|....++..+..++....+++|..+++.+...+.+
T Consensus       133 ~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       133 LFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444333443 3778899999999999999999999999999999988877653

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=82.74  E-value=30  Score=35.78  Aligned_cols=92  Identities=14%  Similarity=-0.012  Sum_probs=52.8

Q ss_pred             cccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccc
Q 007932          367 ASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVP  446 (584)
Q Consensus       367 ~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (584)
                      +.+........++.+++.+.+.|+++||+           ...+..++.+++.+.    +                  ..
T Consensus        72 a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-----------~cl~~cily~~scl~----k------------------~~  118 (354)
T PF05631_consen   72 AILFVAGFASSAIFGTFVGSLADRYGRKK-----------ACLLFCILYSLSCLT----K------------------HS  118 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchH-----------HHHHHHHHHHHHHHH----H------------------hc
Confidence            34445556677888888888888877774           123333333333321    1                  12


Q ss_pred             eeehhhHHHHHHHHHHHHHHhhhceeee-----eccCCchhHHHHHHHHH
Q 007932          447 MSIFWLLPQYVLLGVADVFNAIGLLEFF-----YDQSPEDMQSLGTTFFT  491 (584)
Q Consensus       447 ~~~~~li~~~~l~g~~~~~~~~~~~~~~-----~~~~P~~~rg~~~gi~~  491 (584)
                      .+...++..=++.|++..+.+..--++.     .+-.|++..+...+...
T Consensus       119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~t  168 (354)
T PF05631_consen  119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLAT  168 (354)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            3456677777888888887766533322     24466665555544433

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=82.74  E-value=1.9  Score=46.17  Aligned_cols=155  Identities=11%  Similarity=0.004  Sum_probs=83.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchh-hhhhHHHHHHHHHHHhhhHhHHHhhcccchh-HHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-LHEDTV-SSVRNVNNWSGVVWITPLLGAYIADTYIGRF-WTFTLSSLI  104 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-l~~~~~-~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk-~~~~~~~~~  104 (584)
                      |++|...+..++..+....+.+......+.. .+.++. -.-.+...|.++-.++..+..+.- .- ++| +.+.+..+.
T Consensus       269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p-~~~~~~l~i~s~~  346 (437)
T TIGR00939       269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WP-DEDSRWLPILSFL  346 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-ee-CCCccchHHHHHH
Confidence            5666666655555544443333322222211 112222 334556666777777776554431 11 222 133333333


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCC-CcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKT-STSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFN  183 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~  183 (584)
                      -.+...+..+.+.-+.         ...+ --++.+..++.-++.|+..|...+....+..+..+++      +|..+..
T Consensus       347 R~iFIPlf~lcn~~~~---------~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~------e~e~aG~  411 (437)
T TIGR00939       347 RVLFIPLFLLCNYPQR---------SRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPH------EREVAGA  411 (437)
T ss_pred             HHHHHHHHHHhcCCcc---------ccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHH------HHHHHHH
Confidence            3333322222211000         0000 0135666777788899999999988888888888766      4788888


Q ss_pred             eehhHHhHhHHHHhhh
Q 007932          184 WWMFSSFIGALCATLG  199 (584)
Q Consensus       184 ~~~~~~~~g~~~g~~~  199 (584)
                      +..++.++|-.+|..+
T Consensus       412 ~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       412 LMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            8888888888877554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	584
2xut_A	524	Crystal Structure Of A Proton Dependent Oligopeptid		1e-22
4aps_A	491	Crystal Structure Of A Pot Family Peptide Transport		2e-08

>pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 115/491 (23%), Positives = 212/491 (43%), Gaps = 63/491 (12%)
Query: 26  KW-KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNV------NNWSGVVW 78
           KW +   +++  EA ER +FYG+++ L  +L + L       +R        +++   V+
Sbjct: 9   KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVY 68
Query: 79  ITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQI 138
             PLLG +IAD + G++ T    SLIY +G   L +                       +
Sbjct: 69  FFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI-------------------FEHSV 109
Query: 139 AFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATL 198
             FY+ L++IA+G+GG KP +S+F  DQFD  N   ++L    F+ + F+   G+  A+L
Sbjct: 110 QGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASL 166
Query: 199 GLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSP------ARDLIRVP 252
            +  + +N G  + +GIP   +  + V F++G   Y H   + K P       R  +   
Sbjct: 167 SMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTK 226
Query: 253 IAAFRNRKIQLP-----DNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGD 307
           +    N  + L           L    T   +      +V    F     A+++      
Sbjct: 227 VEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG-AGASLQLERARK 285
Query: 308 SKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAA 367
           S P      V+G + VL + +++ +     +++ Q  + ++ Q    N  + P +  PA 
Sbjct: 286 SHPDAA---VDGVRSVLRILVLFALVTPFWSLFDQKASTWILQA---NDMVKPQWFEPAM 339
Query: 368 SLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEV 427
            + +   L ++L +P  +    P + R       +T L+++G G  I  ++  +   +++
Sbjct: 340 -MQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQL 395
Query: 428 RRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGT 487
                     + G      +SIFW +  Y LL   +V  +   LEF Y Q+P+ M+    
Sbjct: 396 M---------MDGGSA---LSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIM 443
Query: 488 TFFTSGIGVGN 498
           +F+T  + VGN
Sbjct: 444 SFWTLSVTVGN 454

>pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 104/225 (46%), Gaps = 39/225 (17%)
Query: 37  EAFERMAFYGIQSNLVNYL-----TSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTY 91
           E +ER ++YG+++ L+ Y+     T  LH    ++   +  ++ +V+++  +G ++AD  
Sbjct: 22  EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRI 81
Query: 92  IGR----FWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYI 147
           IG     FW      ++ +LG I+L +        P   + +            + S+ +
Sbjct: 82  IGARPAVFW----GGVLIMLGHIVLAL--------PFGASAL------------FGSIIL 117
Query: 148 IAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL 207
           I IG G  KPN+ST     +D+ +   R+   S F   +F   +GA  A L +   QE  
Sbjct: 118 IIIGTGFLKPNVSTLVGTLYDEHD-RRRDAGFSIF---VFGINLGAFIAPLIVGAAQEAA 173
Query: 208 GWGLGYGIPTAGLLFSLVIFYIGSP--IYRHKIRKTKSPARDLIR 250
           G+ + + +   G+   L+++Y G    +  H +R T   A + ++
Sbjct: 174 GYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVK 218

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	584
2xut_A	524	Proton/peptide symporter family protein; transport	1e-146
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	1e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524

 Score =  430 bits (1109), Expect = e-146
 Identities = 112/563 (19%), Positives = 216/563 (38%), Gaps = 64/563 (11%)

Query: 21  SSKTGKW-KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE------DTVSSVRNVNNW 73
                KW +   +++  EA ER +FYG+++ L  +L + L            +    +++
Sbjct: 4   PVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSF 63

Query: 74  SGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKT 133
              V+  PLLG +IAD + G++ T    SLIY +G   L +                   
Sbjct: 64  VIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI------------------- 104

Query: 134 STSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGA 193
               +  FY+ L++IA+G+GG KP +S+F  DQFD  N          F+ + F+   G+
Sbjct: 105 FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQ---KAFDMFYFTINFGS 161

Query: 194 LCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPI 253
             A+L +  + +N G  + +GIP   +  + V F++G   Y H   + K P    + V  
Sbjct: 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHG-FLPVIR 220

Query: 254 AAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAI---------KHGN 304
           +A    K++   N   +               +        L  A +             
Sbjct: 221 SALLT-KVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQ 279

Query: 305 GGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRI 364
              ++       V+G + VL + +++ +     +++ Q  + ++ Q   + +        
Sbjct: 280 LERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVK----PQWF 335

Query: 365 PAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYA 424
             A + +   L ++L +P  +    P + R        T L+++G G  I  ++  +   
Sbjct: 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIVVGT 392

Query: 425 VEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQS 484
           +++                   +SIFW +  Y LL   +V  +   LEF Y Q+P+ M+ 
Sbjct: 393 IQLMMDGG------------SALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG 440

Query: 485 LGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILN 544
              +F+T  + VGN         V   T     +  +   ++      +  F    +IL 
Sbjct: 441 TIMSFWTLSVTVGNLWVLLANVSVKSPT---VTEQIVQTGMSVTAFQMF--FFAGFAILA 495

Query: 545 LGAFFWASSRYVYKRETKEVNEG 567
              F   +  Y  +   ++    
Sbjct: 496 AIVFALYARSYQMQDHYRQATGS 518

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 91.3 bits (227), Expect = 1e-19
 Identities = 44/216 (20%), Positives = 93/216 (43%), Gaps = 29/216 (13%)

Query: 28  KACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-----LHEDTVSSVRNVNNWSGVVWITPL 82
              + L   E +ER ++YG+++ L+ Y+        LH    ++   +  ++ +V+++  
Sbjct: 13  LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72

Query: 83  LGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFY 142
           +G ++AD  IG         ++ +LG I+L +                        +  +
Sbjct: 73  IGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG--------------------ASALF 112

Query: 143 SSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVY 202
            S+ +I IG G  KPN+ST     +D+ +      + + F+ ++F   +GA  A L +  
Sbjct: 113 GSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----RDAGFSIFVFGINLGAFIAPLIVGA 168

Query: 203 IQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKI 238
            QE  G+ + + +   G+   L+++Y G        
Sbjct: 169 AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPH 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 5e-06
 Identities = 57/427 (13%), Positives = 117/427 (27%), Gaps = 162/427 (37%)

Query: 256 FRNRKIQLPDN-PSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTV 314
           ++ + I L     + +  FD +D ++   + +        L K  I H            
Sbjct: 16  YQYKDI-LSVFEDAFVDNFDCKD-VQDMPKSI--------LSKEEIDH----IIMSK--- 58

Query: 315 TQVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLN-----RSLSPSFRIPAASL 369
             V GT       L W +      +  +    FV++   +N       +    R P+   
Sbjct: 59  DAVSGTLR-----LFWTLLSKQEEMVQK----FVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 370 GSFVTLSMLL--SVPMYDRYFV----PFMRRRTG----NP-RGIT---MLQRLGVGFVIQ 415
             ++     L     ++ +Y V    P+++ R       P + +    +L   G G    
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSG--KT 164

Query: 416 VMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWL----------------------- 452
            +A+ +  + +V+                    IFWL                       
Sbjct: 165 WVALDVCLSYKVQCKM--------------DFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 453 -----------------------------LPQYV--LLGVADVFNAIGLLEFFYDQSPED 481
                                           Y   LL + +V NA      F      +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAF------N 263

Query: 482 MQS--LGTTFFTSGIGVGNFLNS---FLVTLVDKVTGRNGEKG------WIGDNLND--- 527
           +    L TT F     V +FL++     ++L         ++       ++     D   
Sbjct: 264 LSCKILLTTRFKQ---VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 528 --CHLDYYYGFLMVISILNLGAFF------WASSRYVYKRETKEVNEGCVEM----ETKA 575
                         +SI  +          W + ++V   +   + E  + +    E + 
Sbjct: 321 EVLT-----TNPRRLSI--IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373

Query: 576 LDTSLGL 582
           +   L +
Sbjct: 374 MFDRLSV 380

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	584
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.94
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.93
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.92
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.35
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.35
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.26
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.12
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.83
2xut_A	524	Proton/peptide symporter family protein; transport	98.01

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.97  E-value=1.8e-30  Score=280.60  Aligned_cols=444  Identities=17%  Similarity=0.257  Sum_probs=289.6

Q ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----cCCchhhhhhHHHHHHHHHHHhhhHhHHHhhc-ccchhH
Q 007932           23 KTGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQ-----LHEDTVSSVRNVNNWSGVVWITPLLGAYIADT-YIGRFW   96 (584)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~-~~Grk~   96 (584)
                      .++++|.++.+....++..+++|++.++++.|++++     +|.+..+.+++.+.+.++..++++++|+++|| + |||+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~   86 (491)
T 4aps_A            8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP   86 (491)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence            345678899999999999999999999999999988     99999999999999999999999999999999 8 9999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhc
Q 007932           97 TFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERN  176 (584)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~  176 (584)
                      +++++.++.+++.++++++                    ++.+.++++|++.|++.+...++..++++|.+|++++    
T Consensus        87 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----  142 (491)
T 4aps_A           87 AVFWGGVLIMLGHIVLALP--------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----  142 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHSC--------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----
T ss_pred             HHHHHHHHHHHHHHHHHHh--------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----
Confidence            9999999999999888775                    4577799999999999999999999999999998742    


Q ss_pred             ccceeeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeec---CCCCCChhhhhHHHHH
Q 007932          177 LKVSFFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHK---IRKTKSPARDLIRVPI  253 (584)
Q Consensus       177 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  253 (584)
                      +|+.++++++...++|..++|.+++++.+..||++.|++.++..+++.+..+...++...+   .++++.+..+..+...
T Consensus       143 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (491)
T 4aps_A          143 RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV  222 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred             cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence            3778888899999999999999999999999999999998777666665554433222111   1111011111111000


Q ss_pred             H--------------HHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchh
Q 007932          254 A--------------AFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEG  319 (584)
Q Consensus       254 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  319 (584)
                      .              ....+.    .+.+...      ...... ...  ....+...          .++.... ...+
T Consensus       223 ~~g~~l~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~-~~~--~~~~~~~~----------~~~~~~~-~~~~  278 (491)
T 4aps_A          223 KVSLAVAGFIAIIVVMNLVGW----NSLPAYI------NLLTIV-AIA--IPVFYFAW----------MISSVKV-TSTE  278 (491)
T ss_dssp             HCCCCCHHHHHHHHHHHHHSS----CCTTHHH------HHHHHH-HHH--HHHHHHHH----------HC----------
T ss_pred             HHHHHHHHHHHHHHHHHhccC----cccccch------hhhhHH-HHH--HHHHHHHH----------Hhhcccc-cHHH
Confidence            0              000000    0000000      000000 000  00000000          0000000 0011


Q ss_pred             hHHHHHHHHHHHHhhhhhhhhccccceEEEecc-cccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhccCC
Q 007932          320 TKLVLGMALIWLVTLIPSTIWAQINTLFVKQGT-TLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGN  398 (584)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~  398 (584)
                      +++......++.....++..+.+....+..... ..+..     ....+.+.....+..++..++.+++.+++.||.   
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~---  350 (491)
T 4aps_A          279 HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQ---  350 (491)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHHHHHHhccC---
Confidence            222222233333344444444444332111110 01111     134566777778888888888888877766653   


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccC
Q 007932          399 PRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQS  478 (584)
Q Consensus       399 ~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~  478 (584)
                         ......+.++.++.++++++..........            ..+.+.++.++.+++.+++.+...+..+.++.+.+
T Consensus       351 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  415 (491)
T 4aps_A          351 ---PSSPTKFAVGLMFAGLSFLLMAIPGALYGT------------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA  415 (491)
T ss_dssp             -----CHHHHHHHHHHHHHHHTTTHHHHHHCCC------------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred             ---CCchHHHHHHHHHHHHHHHHHHHHHHhcCC------------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence               134566778888888888766654311000            11245667778888999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007932          479 PEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSRY  555 (584)
Q Consensus       479 P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~~  555 (584)
                      |++.||+++|+.++...+|+.+++.+.+.+.+                 .++...|.+.+++++++.++++++.++.
T Consensus       416 p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          416 PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-----------------SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888765532                 1334567777777777766666655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=8.8e-30  Score=277.69  Aligned_cols=472  Identities=23%  Similarity=0.380  Sum_probs=286.2

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------CchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLH------EDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWT   97 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~------~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~   97 (584)
                      +.++|.++.+.+..++.++++|++.++++.|+++++|      ++..+.+++.+.+.++..++.+++|+++||++|||++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~   87 (524)
T 2xut_A            8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT   87 (524)
T ss_dssp             -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3455778889999999999999999999999999999      9999999999999999999999999999995599999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcc
Q 007932           98 FTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNL  177 (584)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~  177 (584)
                      ++++.++.+++.+++.++.                   .+.+.++++|++.|++.+...+...+++.|.+|+++      
T Consensus        88 ~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------  142 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------  142 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------
T ss_pred             HHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------
Confidence            9999999999988888762                   157789999999999999999999999999999884      


Q ss_pred             cce---eeeeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHH
Q 007932          178 KVS---FFNWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIA  254 (584)
Q Consensus       178 r~~---~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (584)
                      |++   .+++++.+.++|..++|.+++++.+..||++.|++.++..++..+..+...++.++++|++ ++..+..+.+..
T Consensus       143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  221 (524)
T 2xut_A          143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP-KDPHGFLPVIRS  221 (524)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC-ccchhHHHHHHH
Confidence            654   4555899999999999999999998899999999888876666555544444332222222 111111111111


Q ss_pred             HHhhccccCCCCCCCccccccccc---cccccccc--------------cCCCcchh--hhHHHHhcCCCCCCCCCcccc
Q 007932          255 AFRNRKIQLPDNPSELHEFDTQDY---IRSGKRQV--------------VHSPAFRC--LDKAAIKHGNGGDSKPPCTVT  315 (584)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~  315 (584)
                      ..+++... +++.....+......   ........              +.....+|  ++..          .+.+...
T Consensus       222 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~  290 (524)
T 2xut_A          222 ALLTKVEG-KGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERA----------RKSHPDA  290 (524)
T ss_dssp             -----CTT-HHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHS----------CCSCCSS
T ss_pred             HHhhhhcc-cCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhh----------hccccHh
Confidence            11111000 000000000000000   00000000              00000001  0000          0001111


Q ss_pred             cchhhHHHHHHHHHHHHhhhhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhhhc
Q 007932          316 QVEGTKLVLGMALIWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRR  395 (584)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~  395 (584)
                      +..++++.+.....+.....++..+.+..+.+..+....+..   .+ .+.+.+...+.+..++..++.+++..+..+|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (524)
T 2xut_A          291 AVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERM  366 (524)
T ss_dssp             SSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhc
Confidence            223344555555555555555555555544333332222211   11 24556667777788888888887754444443


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeee
Q 007932          396 TGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFY  475 (584)
Q Consensus       396 ~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~  475 (584)
                      .+   +.+..+.+.+|+++.++++++.+......            +.....+.+++++.+++.+++++...+..++++.
T Consensus       367 ~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~  431 (524)
T 2xut_A          367 GV---KLTALRKMGAGIAITGLSWIVVGTIQLMM------------DGGSALSIFWQILPYALLTFGEVLVSATGLEFAY  431 (524)
T ss_dssp             -------CCHHHHHTHHHHHHHHHHTTTTTTTTT------------TTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHH
T ss_pred             CC---CCChHHHHHHHHHHHHHHHHHHHHHHHHh------------cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21   12445567778887777776654431100            0011245667788889999999999999999999


Q ss_pred             ccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCC-CCCccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932          476 DQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGD-NLNDCHLDYYYGFLMVISILNLGAFFWASSR  554 (584)
Q Consensus       476 ~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~  554 (584)
                      +.+|++.||+++|+.++..++|+.+++.+.+.+.+..+    .+|..+ +.+  ...+.|++.++++++++++++++.++
T Consensus       432 ~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  505 (524)
T 2xut_A          432 SQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYARS  505 (524)
T ss_dssp             HHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988753211    123211 011  11223677777777776666655554


Q ss_pred             ccc
Q 007932          555 YVY  557 (584)
Q Consensus       555 ~~~  557 (584)
                      ++.
T Consensus       506 ~~~  508 (524)
T 2xut_A          506 YQM  508 (524)
T ss_dssp             ---
T ss_pred             hcc
Confidence            433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.94  E-value=1e-26  Score=247.80  Aligned_cols=400  Identities=11%  Similarity=0.002  Sum_probs=256.0

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           26 KWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      +++.++.+.+..+...+..+.+.+.++.+ .+++ .+..+.+++.+.+.++..++.+++|+++||+ |||++++++.++.
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~  102 (451)
T 1pw4_A           26 RWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILA  102 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHH
Confidence            34556666666777777766666666655 5567 9999999999999999999999999999999 9999999999999


Q ss_pred             HHHHHHHHH----hhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhccccee
Q 007932          106 VLGMILLTM----AASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSF  181 (584)
Q Consensus       106 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~  181 (584)
                      +++.+++++    +                    .+.+.++++|++.|++.+...+...+++.|.+|++      +|+++
T Consensus       103 ~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~  156 (451)
T 1pw4_A          103 AAVMLFMGFVPWAT--------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGI  156 (451)
T ss_dssp             HHHHHHHHHCHHHH--------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHH
T ss_pred             HHHHHHHHhhhhcc--------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHH
Confidence            999999988    5                    45677999999999999999999999999999987      69999


Q ss_pred             eeeehhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhcc
Q 007932          182 FNWWMFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRK  260 (584)
Q Consensus       182 ~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (584)
                      +++.+.+.++|..++|.+++++.+..| ||+.|++.++..++..++.++..++.++.....  +                
T Consensus       157 ~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------------  218 (451)
T 1pw4_A          157 VSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP--P----------------  218 (451)
T ss_dssp             HHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC--S----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC--C----------------
Confidence            999999999999999999999888888 999999988776665555444333211111000  0                


Q ss_pred             ccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHH-HHHhhhhhhh
Q 007932          261 IQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALI-WLVTLIPSTI  339 (584)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  339 (584)
                         .++.....+.+  .+  ..  +   .+...+.+.. .              ......+.++..... ++....+...
T Consensus       219 ---~~~~~~~~~~~--~~--~~--~---~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (451)
T 1pw4_A          219 ---IEEYKNDYPDD--YN--EK--A---EQELTAKQIF-M--------------QYVLPNKLLWYIAIANVFVYLLRYGI  271 (451)
T ss_dssp             ---CTTTCCC----------------------CCTHHH-H--------------HHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---hhhhccccccc--ch--hh--h---hcccccccch-H--------------HHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence               00000000000  00  00  0   0000000000 0              000011222222211 1222222222


Q ss_pred             hccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhh--hhhccCCCCCCChhHHHHHHHHHHH-
Q 007932          340 WAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPF--MRRRTGNPRGITMLQRLGVGFVIQV-  416 (584)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~i~ig~~l~~-  416 (584)
                      ....+.++ .+.    ....   ....+.+.....++.+++.++..++.+++  .+|           +.+.++..+.. 
T Consensus       272 ~~~~~~~~-~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-----------~~~~~~~~~~~~  332 (451)
T 1pw4_A          272 LDWSPTYL-KEV----KHFA---LDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR-----------GATGVFFMTLVT  332 (451)
T ss_dssp             HHHHHHHB-TTB----SCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH-----------HHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHh----cCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hhHHHHHHHHHH
Confidence            22222211 110    1111   11233455555666777777777776665  333           22334443333 


Q ss_pred             HHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhH
Q 007932          417 MAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGV  496 (584)
Q Consensus       417 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l  496 (584)
                      ++++.....                   ...+.+......++.+++.....+..+.++.+.+|++.||++.|+.+....+
T Consensus       333 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  393 (451)
T 1pw4_A          333 IATIVYWMN-------------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYL  393 (451)
T ss_dssp             HHHHHTTSC-------------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-------------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHH
Confidence            444333221                   0013445566667778888888888889999999999999999999999999


Q ss_pred             -HHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhh
Q 007932          497 -GNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASS  553 (584)
Q Consensus       497 -g~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~  553 (584)
                       |..+++.+.+.+.+.                .++...|++.+++.+++.+..++..+
T Consensus       394 ~g~~~~~~~~g~l~~~----------------~g~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          394 GGSVAASAIVGYTVDF----------------FGWDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHHHHHHHS----------------SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence             999999999887632                13456677777777777665555433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.93  E-value=9.9e-25  Score=231.65  Aligned_cols=356  Identities=13%  Similarity=0.032  Sum_probs=235.7

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHH
Q 007932           24 TGKWKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSL  103 (584)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~  103 (584)
                      +++++.++.+....+...+..+.+.+.++ ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHH
Confidence            44555666666666667666665555544 56789999999999999999999999999999999999 99999999999


Q ss_pred             HHHHHHHHH---HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccce
Q 007932          104 IYVLGMILL---TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVS  180 (584)
Q Consensus       104 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~  180 (584)
                      +.+++.+++   ..+                    ++.+.++++|++.|++.|...+...++++|.+|++      +|++
T Consensus       100 ~~~~~~~~~~~~~~~--------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~  153 (438)
T 3o7q_A          100 LYALGAALFWPAAEI--------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES------SGHF  153 (438)
T ss_dssp             HHHHHHHHHHHHHHT--------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCST------THHH
T ss_pred             HHHHHHHHHHhcccc--------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCch------hHHH
Confidence            999999888   443                    56888999999999999999999999999999988      5999


Q ss_pred             eeeeehhHHhHhHHHHhhhhhhhh-cccc-------------------------hhHHHHHHHHHHHHHHHHHHHhCCce
Q 007932          181 FFNWWMFSSFIGALCATLGLVYIQ-ENLG-------------------------WGLGYGIPTAGLLFSLVIFYIGSPIY  234 (584)
Q Consensus       181 ~~~~~~~~~~~g~~~g~~~~~~l~-~~~~-------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~  234 (584)
                      ++++.+...++|..++|.+++++. +..+                         |++.|++.++..++..+..+....  
T Consensus       154 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--  231 (438)
T 3o7q_A          154 RLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKF--  231 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence            999999999999999999999988 5544                         999998777665555444333211  


Q ss_pred             eecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCccc
Q 007932          235 RHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTV  314 (584)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  314 (584)
                          |+. .+              +  . ++++    +   ++           ....++.+                  
T Consensus       232 ----p~~-~~--------------~--~-~~~~----~---~~-----------~~~~~~~~------------------  253 (438)
T 3o7q_A          232 ----PAL-QS--------------D--N-HSDA----K---QG-----------SFSASLSR------------------  253 (438)
T ss_dssp             ----CCC-TT--------------T--C-CCCS----S---TT-----------SHHHHHHH------------------
T ss_pred             ----Ccc-cc--------------c--c-cccc----c---cc-----------chhhhHHH------------------
Confidence                111 00              0  0 0000    0   00           00000000                  


Q ss_pred             ccchhhHHHHHHHH-HHHHhhhhhhhhccccceEEEecccccCCCCCCcccCccccccchhhHHHHHhhccccchhhhhh
Q 007932          315 TQVEGTKLVLGMAL-IWLVTLIPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSFVTLSMLLSVPMYDRYFVPFMR  393 (584)
Q Consensus       315 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~  393 (584)
                        ..+.+.++.... .+.............+.++..+..    ...   ....+.+.....++.+++.++..++.+|+.+
T Consensus       254 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~  324 (438)
T 3o7q_A          254 --LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIP----GMT---AGFAANYLTGTMVCFFIGRFTGTWLISRFAP  324 (438)
T ss_dssp             --HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST----TCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred             --HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC----Ccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              000112222211 112222222222222222111110    110   1123344455566667777777777666555


Q ss_pred             hccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceee
Q 007932          394 RRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEF  473 (584)
Q Consensus       394 r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~  473 (584)
                      |           +.+.++.++.+++++.....                      +..+.+..+++.+++.....+..+.+
T Consensus       325 ~-----------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~g~~~~~~~~~~~~~  371 (438)
T 3o7q_A          325 H-----------KVLAAYALIAMALCLISAFA----------------------GGHVGLIALTLCSAFMSIQYPTIFSL  371 (438)
T ss_dssp             H-----------HHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             h-----------HHHHHHHHHHHHHHHHHHHc----------------------CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5           33566666666666554443                      11133444567778888888888999


Q ss_pred             eeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Q 007932          474 FYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKV  511 (584)
Q Consensus       474 ~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~  511 (584)
                      ..+..|++ ++.+.++.. .+.+|+.+++.+.+.+.+.
T Consensus       372 ~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          372 GIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             HHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred             HHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence            88999977 899998877 6779999999999887653

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.92  E-value=7.7e-26  Score=244.18  Aligned_cols=418  Identities=11%  Similarity=0.006  Sum_probs=232.1

Q ss_pred             hhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHH
Q 007932           63 TVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFY  142 (584)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (584)
                      ..+.+++++.+.++..++++++|+++||+ |||++++++.+++.++.++++++..........  ..-...-.++.+.++
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~--~~~~~~~a~~~~~l~  130 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPD--NTVPVYLAGYVPEFV  130 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSS--SSCCGGGGGCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcch--hHHHHHHhhhHHHHH
Confidence            45678899999999999999999999999 999999999999999999988642100000000  000000125788999


Q ss_pred             HHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc--------cchhHHHH
Q 007932          143 SSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN--------LGWGLGYG  214 (584)
Q Consensus       143 ~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~--------~~~~~~f~  214 (584)
                      ++|+++|++.|...+..+++++|..|++      +|++..++.+.+..+|..+++.++..+...        .+|++.+.
T Consensus       131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (491)
T 4gc0_A          131 IYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA  204 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence            9999999999999999999999999988      699999999999999999988777665432        34676666


Q ss_pred             HHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCCCCccccccccccccccccccCCCcchh
Q 007932          215 IPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNPSELHEFDTQDYIRSGKRQVVHSPAFRC  294 (584)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (584)
                      +..+..++..+..+..++..+....++  +..+..+.+.....+....        .+..+.++..... +.    ....
T Consensus       205 ~~~~~~~~~~~~~~~~peSp~~L~~~~--~~~~a~~~l~~~~~~~~~~--------~~~~~~~~~~~~~-~~----~~~~  269 (491)
T 4gc0_A          205 SECIPALLFLMLLYTVPESPRWLMSRG--KQEQAEGILRKIMGNTLAT--------QAVQEIKHSLDHG-RK----TGGR  269 (491)
T ss_dssp             TTHHHHHHHHHHGGGSCCCHHHHHHTT--CHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-HH----HTTH
T ss_pred             hhhhhhhhhhhhhhcCCCChHHHHHcC--chhHHHHhHHHhcCCchhH--------HHHHHHHHHHHhh-hh----hhhH
Confidence            555544444333333222111110011  0000001100000000000        0000000000000 00    0000


Q ss_pred             hhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhh--hhhhhhccccceEEEecccccCCCCCCcccCccccccc
Q 007932          295 LDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTL--IPSTIWAQINTLFVKQGTTLNRSLSPSFRIPAASLGSF  372 (584)
Q Consensus       295 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  372 (584)
                      +.                    ....++............  ......... +.. .+    ...   ...........+
T Consensus       270 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~----~~~---~~~~~~~~~~~~  320 (491)
T 4gc0_A          270 LL--------------------MFGVGVIVIGVMLSIFQQFVGINVVLYYA-PEV-FK----TLG---ASTDIALLQTII  320 (491)
T ss_dssp             HH--------------------HSCCTHHHHHHHHHHHHHHTCHHHHHHHH-HHH-HH----HSS---CCHHHHHHHHHH
T ss_pred             HH--------------------HhcccHHHHHHHHHHHHHHhhhhHHHhcc-hHH-HH----hcC---CCccchhhHHHH
Confidence            00                    000111111111111111  001111110 100 10    000   001112223334


Q ss_pred             hhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCCccceeehhh
Q 007932          373 VTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVEVRRMHVIRVQHISGPKQIVPMSIFWL  452 (584)
Q Consensus       373 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  452 (584)
                      ..+..++...+..++.||++||.           .+..+...++++++..+.....                 .......
T Consensus       321 ~~~~~~~~~~~~~~l~dr~Grr~-----------~~~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~  372 (491)
T 4gc0_A          321 VGVINLTFTVLAIMTVDKFGRKP-----------LQIIGALGMAIGMFSLGTAFYT-----------------QAPGIVA  372 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSHH-----------HHHHHHHHHHHHHHHHHHHHHT-----------------TCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcc-----------hhccchHHHHHHHHHHHHHHhc-----------------ccchHHH
Confidence            44556666666667777777663           3566666677766665554211                 0111122


Q ss_pred             HHHHHHHHH-HHHHHhhhceeeeeccCCchhHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhcCCCCCcccCCCCCccchh
Q 007932          453 LPQYVLLGV-ADVFNAIGLLEFFYDQSPEDMQSLGTTFFTSGIGVGNFLNSFLVTLVDKVTGRNGEKGWIGDNLNDCHLD  531 (584)
Q Consensus       453 i~~~~l~g~-~~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~  531 (584)
                      +....+... ......+..+.+..|.+|.+.|++++|+.+..+++++++++.+.|.+.+..       |...   ..+..
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~---~~~~~  442 (491)
T 4gc0_A          373 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNS-------WLVA---HFHNG  442 (491)
T ss_dssp             HHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH---HHTTC
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh---hhhhh
Confidence            222222222 223345667788999999999999999999999999999999988764311       1000   01223


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccccccccccccccccc
Q 007932          532 YYYGFLMVISILNLGAFFWASSRYVYKRETKEVNEGCVEM  571 (584)
Q Consensus       532 ~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  571 (584)
                      ..|++++++++++.++.+++.||+|+++.||.++..+++.
T Consensus       443 ~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          443 FSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             HHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            4578888999999888888899999988877666555443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.88  E-value=4.3e-23  Score=214.75  Aligned_cols=167  Identities=14%  Similarity=0.076  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHH
Q 007932           31 AFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMI  110 (584)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~  110 (584)
                      +.++...+...+....+.+.++.+ .+++|.++.+.+++.+.+.++..++.++.|+++||+ ||||+++++.++..++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence            455666777777777777766654 678999999999999999999999999999999999 999999999999999998


Q ss_pred             HHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHh
Q 007932          111 LLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSF  190 (584)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  190 (584)
                      ++..+                    ++.+.+++.|++.|++.+...+...+++.|.+|++      +|++++++.+...+
T Consensus        81 ~~~~~--------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  134 (375)
T 2gfp_A           81 VAVTT--------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT------QLRHANSLLNMGIL  134 (375)
T ss_dssp             HHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS------SCCSHHHHHHHHHH
T ss_pred             HHHHh--------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH------HHHHHHHHHHHHHH
Confidence            88887                    45788999999999999999999999999999987      59999999999999


Q ss_pred             HhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH
Q 007932          191 IGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLV  225 (584)
Q Consensus       191 ~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~  225 (584)
                      +|..++|.+++++.+..+|++.|++.++..++..+
T Consensus       135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            99999999999999988999999987765544443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.85  E-value=1.2e-22  Score=215.04  Aligned_cols=389  Identities=8%  Similarity=-0.081  Sum_probs=217.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |..+.+....++..+++..+.++++.|+++++|+++.+.+++.+.+.++..++++++|+++||+ ||||+++++.++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~   85 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence            5667777777777777778889999999999999999999999999999999999999999999 999999998877654


Q ss_pred             HHHHH---HHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          108 GMILL---TMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       108 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      +...+   ......                   ...+..++++.+++.|...+.......+..++..+    +++..++.
T Consensus        86 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~  142 (417)
T 2cfq_A           86 MFAPFFIFIFGPLL-------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR  142 (417)
T ss_dssp             CHHHHHHHTHHHHH-------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred             HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence            32211   111100                   00123344454554444433333334343332111    35666777


Q ss_pred             ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCC
Q 007932          185 WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLP  264 (584)
Q Consensus       185 ~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (584)
                      .+...++|..++|.+++++.+ .+|++.|++.++..++..+..+...++    +++. .                  +.+
T Consensus       143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~-~------------------~~~  198 (417)
T 2cfq_A          143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSS-A------------------TVA  198 (417)
T ss_dssp             HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCS-S------------------CSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccc-c------------------ccc
Confidence            777789999999999999887 589999887665433332221111111    1100 0                  000


Q ss_pred             CCCCCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHH-Hhhhhhhhhccc
Q 007932          265 DNPSELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWL-VTLIPSTIWAQI  343 (584)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  343 (584)
                      +..    +   ++  +      ...+..++.+                    .-..++.+....... ....++...++.
T Consensus       199 ~~~----~---~~--~------~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (417)
T 2cfq_A          199 NAV----G---AN--H------SAFSLKLALE--------------------LFRQPKLWFLSLYVIGVSCTYDVFDQQF  243 (417)
T ss_dssp             SSS----S---SC--C------CCCCHHHHHH--------------------HTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc----c---cc--c------ccccHHHHHH--------------------HhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            000    0   00  0      0000000000                    001122222221111 111222221222


Q ss_pred             cceEEEecccccCCCCCCcc-cCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 007932          344 NTLFVKQGTTLNRSLSPSFR-IPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIA  422 (584)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~  422 (584)
                      +.++ .+.  .+..   +.. ...+.+..++.+...++..+..++.||+.+|+           .+.++..+.+++++..
T Consensus       244 ~~~~-~~~--~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----------~l~~~~~~~~~~~~~~  306 (417)
T 2cfq_A          244 ANFF-TSF--FATG---EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----------ALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             HHHH-HHT--SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----------HHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHH--Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----------HHHHHHHHHHHHHHHH
Confidence            2211 110  0000   000 01123333444455556666666666665552           3555666666554443


Q ss_pred             HHHHHhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHH-HHHHhHHHHHH
Q 007932          423 YAVEVRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFF-TSGIGVGNFLN  501 (584)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~lg  501 (584)
                      +..                     .+.+.++....+.+++.....+..+.++.|.+|++.||++.++. +..+.+|+.++
T Consensus       307 ~~~---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~g  365 (417)
T 2cfq_A          307 SFA---------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFM  365 (417)
T ss_dssp             TTC---------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHh---------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHh
Confidence            222                     12333444445566666666666778899999999999999984 77888999999


Q ss_pred             HHHHHHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhh
Q 007932          502 SFLVTLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASS  553 (584)
Q Consensus       502 ~~l~~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~  553 (584)
                      +.+.+.+.+.                .++...|.+.+++++++.+..+...+
T Consensus       366 p~l~G~l~~~----------------~g~~~~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          366 SVLAGNMYES----------------IGFQGAYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             THHHHTHHHH----------------SHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred             hhhHHHHHHh----------------cCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9998766531                13445677777777777665544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.35  E-value=1.1e-12  Score=138.91  Aligned_cols=180  Identities=14%  Similarity=0.135  Sum_probs=150.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhccc-chhHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYI-GRFWTFTLSSLIY  105 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~-Grk~~~~~~~~~~  105 (584)
                      .+.++...+..++..+..+++..+++.|+++.+|.+..+.+++.+...++..++.++.|+++||+. |||+.+.++.++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~  330 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL  330 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence            366788888888899999999999999999889999999999999999999999999999999932 7888888777665


Q ss_pred             H-HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          106 V-LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       106 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      . ++.+++.+..                  ..+.+.+.+..++.|++.+...+...+++.|.+|++      .|++++++
T Consensus       331 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~  386 (451)
T 1pw4_A          331 VTIATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGF  386 (451)
T ss_dssp             HHHHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHH
T ss_pred             HHHHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHHH
Confidence            5 5544443321                  124666777788889998888888899999999988      59999999


Q ss_pred             ehhHHhH-hHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHh
Q 007932          185 WMFSSFI-GALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       185 ~~~~~~~-g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~  230 (584)
                      ++...++ |..++|.+.+++.+..||+..|++.++..+++.++.+..
T Consensus       387 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 999999999999999999999998887766666555443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.35  E-value=4.2e-12  Score=134.10  Aligned_cols=168  Identities=12%  Similarity=0.053  Sum_probs=137.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH-hhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNY-LTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIY  105 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~  105 (584)
                      .+.++..++..++.....+++..+++.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+++.++.++.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~  335 (438)
T 3o7q_A          257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA  335 (438)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence            3567777777788888888889999999 8888899999999999999999999999999999998 9999999999888


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee
Q 007932          106 VLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW  185 (584)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  185 (584)
                      .++.+++...                    ++.+. .+..++.|++.+...|...++..|.+|++       ++.+.++.
T Consensus       336 ~~~~~~~~~~--------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  387 (438)
T 3o7q_A          336 MALCLISAFA--------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFI  387 (438)
T ss_dssp             HHHHHHHHHC--------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHH
T ss_pred             HHHHHHHHHc--------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHH
Confidence            8887777665                    22333 33447788999999999999999999855       45555555


Q ss_pred             hhHHhHhHHHHhhhhhhhhcccc-hhHHHHHHHHHHHHHH
Q 007932          186 MFSSFIGALCATLGLVYIQENLG-WGLGYGIPTAGLLFSL  224 (584)
Q Consensus       186 ~~~~~~g~~~g~~~~~~l~~~~~-~~~~f~~~~~~~~~~~  224 (584)
                      . ...+|+.++|.+.|++.+..| ++..|++.++..++..
T Consensus       388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            5 567999999999999999888 9999887665544433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.26  E-value=1e-11  Score=131.01  Aligned_cols=175  Identities=12%  Similarity=0.006  Sum_probs=128.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---chhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHE---DTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI  104 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~  104 (584)
                      +..+......+.....++....+++.|+++.++.   +....+...+...++..++.++.|+++||+ |||+++.++.++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~  298 (417)
T 2cfq_A          220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI  298 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence            3444444444444555555666788888766653   234456666777778888999999999999 999999988887


Q ss_pred             HHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeee
Q 007932          105 YVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNW  184 (584)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  184 (584)
                      .+++.+++.+.                    .+.+.+.+..++.+++.+...+....++.|.+|++      .|+++.++
T Consensus       299 ~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~  352 (417)
T 2cfq_A          299 MSVRIIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLV  352 (417)
T ss_dssp             HHHHHHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHH
T ss_pred             HHHHHHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHH
Confidence            77765555433                    23455666666677776666667788999999987      58998888


Q ss_pred             -ehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          185 -WMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       185 -~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                       ++...++|+.++|.++|++.+..|+...|.+.++..+++.++.+.
T Consensus       353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  398 (417)
T 2cfq_A          353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF  398 (417)
T ss_dssp             HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHh
Confidence             478888999999999999998888888888877776666555444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.12  E-value=1.5e-10  Score=124.27  Aligned_cols=187  Identities=8%  Similarity=0.003  Sum_probs=139.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHH-----HHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFT-----LSS  102 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~-----~~~  102 (584)
                      ...+.+..........+......++.|.++.++.+..+.+.......++..++.++.|++.||+ |||+...     ++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~  361 (491)
T 4aps_A          283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGL  361 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHH
Confidence            3445555556666666666777888899888888877888888999999999999999999998 9986554     677


Q ss_pred             HHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceee
Q 007932          103 LIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFF  182 (584)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~  182 (584)
                      ++..++.+++........           .+...+.+.+.+..++.|++.+...+...+++.|.+|++      .|+++.
T Consensus       362 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~  424 (491)
T 4aps_A          362 MFAGLSFLLMAIPGALYG-----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKA------FNSQMM  424 (491)
T ss_dssp             HHHHHHHTTTHHHHHHCC-----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT------CSSSST
T ss_pred             HHHHHHHHHHHHHHHhcC-----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH------HHHHHH
Confidence            777777666655421100           001134566777788899999999999999999999988      599999


Q ss_pred             eeehhHHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCc
Q 007932          183 NWWMFSSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPI  233 (584)
Q Consensus       183 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  233 (584)
                      ++.+...++|..+++.+.+++.+ .++...|.+.+...++..++.+...++
T Consensus       425 g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (491)
T 4aps_A          425 SMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR  474 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998876 466777777777666666555554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.93  E-value=1.2e-09  Score=116.97  Aligned_cols=182  Identities=12%  Similarity=0.105  Sum_probs=123.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      +..........+.+...+........++.+..+.+............+...++.++++++.||+ |||+.++.+.....+
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAI  354 (491)
T ss_dssp             THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHH
Confidence            4444444444444444333334444555667788887777777788889999999999999999 999999999888888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHH-HHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIA-FFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      +.+.++......               ..... ......+..+.+. ...|....+.+|.+|.+      .|+++.++.+
T Consensus       355 ~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~------~R~~~~g~~~  412 (491)
T 4gc0_A          355 GMFSLGTAFYTQ---------------APGIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNA------IRGKALAIAV  412 (491)
T ss_dssp             HHHHHHHHHHTT---------------CCHHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTT------THHHHHHHHH
T ss_pred             HHHHHHHHHhcc---------------cchHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHh------HHHHHHHHHH
Confidence            877666543211               11222 2222222222332 23467778999999998      5999999999


Q ss_pred             hHHhHhHHHHhhhhhhhhc------ccchhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          187 FSSFIGALCATLGLVYIQE------NLGWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~------~~~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      ....+|+.+++.+.+.+.+      ..++...|++.++..+++.++.++..|
T Consensus       413 ~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P  464 (491)
T 4gc0_A          413 AAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP  464 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence            9999999999887766643      234566777777776666666665554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.83  E-value=4.7e-10  Score=115.92  Aligned_cols=165  Identities=8%  Similarity=-0.049  Sum_probs=128.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHH-HH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLI-YV  106 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~-~~  106 (584)
                      |.++...+..++.....+++..+.+.|+++.+|.++.+.+.+.+...++..++.++.|++.||+ ||+  +..+... ..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~  275 (375)
T 2gfp_A          199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL  275 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence            5567777778888888888889999999888999999999999999999999999999999998 873  2333322 22


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      .+..+...... +               ..+.+.+.+..++.|++.+...+...++..|.+| +      +|+++.++.+
T Consensus       276 ~~~~~~~~~~~-~---------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~------~~g~~~g~~~  332 (375)
T 2gfp_A          276 AGLLMWIPDWF-G---------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F------LAGTAGALVG  332 (375)
T ss_dssp             TSSSSSHHHHH-H---------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H------HHHHHHHHHH
T ss_pred             HHHHHHHHhhh-c---------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c------ccchHHHHHH
Confidence            22221111100 0               0245667777888899999999999999999998 5      5999999999


Q ss_pred             hHHhHhHHHHhhhhhhhhcccchhHHHHHHHH
Q 007932          187 FSSFIGALCATLGLVYIQENLGWGLGYGIPTA  218 (584)
Q Consensus       187 ~~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~  218 (584)
                      ...++|..++|.+.+.+.+..++...+.+.++
T Consensus       333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~  364 (375)
T 2gfp_A          333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM  364 (375)
T ss_dssp             HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            99999999999999999887778777765443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.01  E-value=1.7e-06  Score=93.31  Aligned_cols=147  Identities=12%  Similarity=0.110  Sum_probs=94.1

Q ss_pred             hhhHHHHHHHHHHHhhhHhHHHh----hcccch----hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcch
Q 007932           66 SVRNVNNWSGVVWITPLLGAYIA----DTYIGR----FWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTSQ  137 (584)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~G~la----D~~~Gr----k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (584)
                      .+.+.....++..+..++.+++.    ||. ||    ++.+.++.++.+++.+++.......           ..+...+
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----------~~~~~~~  404 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERM-GVKLTALRKMGAGIAITGLSWIVVGTIQLMM-----------DGGSALS  404 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----------TTTCCCC
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCCcC
Confidence            45555555556666667777664    444 43    2456677777666665554431000           0000134


Q ss_pred             HHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhccc--ch------
Q 007932          138 IAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQENL--GW------  209 (584)
Q Consensus       138 ~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~--~~------  209 (584)
                      .+.+.+..++.|++.+...+...+++.|.+|++      .|++++++++...++|..++|.+.+.+.+..  +|      
T Consensus       405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~  478 (524)
T 2xut_A          405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKA------MKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM  478 (524)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTT------CCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            556777788899999999999999999999988      5999999999999999999999999987642  23      


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHh
Q 007932          210 ---GLGYGIPTAGLLFSLVIFYIG  230 (584)
Q Consensus       210 ---~~~f~~~~~~~~~~~~~~~~~  230 (584)
                         +..|++.+...+++.++.+..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~  502 (524)
T 2xut_A          479 SVTAFQMFFFAGFAILAAIVFALY  502 (524)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cccccHHHHHHHHHHHHHHHHHHH
Confidence               223555555555554444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	584
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.94
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.89
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.28
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.16

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.4e-26  Score=241.29  Aligned_cols=160  Identities=10%  Similarity=0.054  Sum_probs=136.1

Q ss_pred             HHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 007932           49 SNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNG  128 (584)
Q Consensus        49 ~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (584)
                      +...++++ ++|+|..+.+++.+.+.++..++++++|+++||+ |||+++.++.++.+++.++++.+....         
T Consensus        45 ~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~---------  113 (447)
T d1pw4a_          45 ALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWAT---------  113 (447)
T ss_dssp             HHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred             HHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhh---------
Confidence            44556776 5899999999999999999999999999999999 999999999999999988887763211         


Q ss_pred             CcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehhHHhHhHHHHhhhhhhhhcc-c
Q 007932          129 ICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMFSSFIGALCATLGLVYIQEN-L  207 (584)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~  207 (584)
                             .+.+.+++.|++.|++.|...+...++++|.+|++      +|++++++.+.+.++|..+++.+++.+... .
T Consensus       114 -------~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~  180 (447)
T d1pw4a_         114 -------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN  180 (447)
T ss_dssp             -------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred             -------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhh------cccccccccccccchhhhhhhhhhhhHhhhhh
Confidence                   34677999999999999999999999999999988      699999999999999999999988876654 4


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhCC
Q 007932          208 GWGLGYGIPTAGLLFSLVIFYIGSP  232 (584)
Q Consensus       208 ~~~~~f~~~~~~~~~~~~~~~~~~~  232 (584)
                      +|++.|++.++..++..++.+...+
T Consensus       181 ~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         181 DWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccchhhhhhHHHHHHHHHHhcc
Confidence            7999999888776666555555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3.4e-23  Score=212.79  Aligned_cols=394  Identities=8%  Similarity=-0.121  Sum_probs=230.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHH
Q 007932           28 KACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVL  107 (584)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~  107 (584)
                      |+.|.+....++..++...+.++++.|+++++|+|+.+.|++.+.+.++..+++++.|+++||+ ||||+++++.+...+
T Consensus         7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~~   85 (417)
T d1pv7a_           7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV   85 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHH
Confidence            6788888888888888888889999999999999999999999999999999999999999999 999999999988888


Q ss_pred             HHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeehh
Q 007932          108 GMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWMF  187 (584)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  187 (584)
                      +..++....+.+                .......+.+.+.+.+.+...........+..+++.    .++....+....
T Consensus        86 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  145 (417)
T d1pv7a_          86 MFAPFFIFIFGP----------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS----RRSNFEFGRARM  145 (417)
T ss_dssp             THHHHHHHTHHH----------------HHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH----HHHSCCHHHHHH
T ss_pred             HHHHHHHhhhhh----------------hHHHHHHHHHHHhhhcccccccchhhcccccccchh----hhhHHHHHHHhh
Confidence            887777653211                111123334444444444443333333333333221    145666677777


Q ss_pred             HHhHhHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHhCCceeecCCCCCChhhhhHHHHHHHHhhccccCCCCC
Q 007932          188 SSFIGALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYIGSPIYRHKIRKTKSPARDLIRVPIAAFRNRKIQLPDNP  267 (584)
Q Consensus       188 ~~~~g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (584)
                      ....+..+++.+++.+.+. +|+..+........+..++.++..++.+...++. ++ .            +  . ..+ 
T Consensus       146 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~------------~--~-~~~-  206 (417)
T d1pv7a_         146 FGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA-NA-V------------G--A-NHS-  206 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS-HH-H------------H--S-CCC-
T ss_pred             hhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhh-hh-h------------h--h-hcc-
Confidence            8888999999999988774 4555555554444444444333332211111111 00 0            0  0 000 


Q ss_pred             CCccccccccccccccccccCCCcchhhhHHHHhcCCCCCCCCCcccccchhhHHHHHHHHHHHHhhhhhhhhccccceE
Q 007932          268 SELHEFDTQDYIRSGKRQVVHSPAFRCLDKAAIKHGNGGDSKPPCTVTQVEGTKLVLGMALIWLVTLIPSTIWAQINTLF  347 (584)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (584)
                                           ........  ...             . ....+...  .....................
T Consensus       207 ---------------------~~~~~~~~--~~~-------------~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  247 (417)
T d1pv7a_         207 ---------------------AFSLKLAL--ELF-------------R-QPKLWFLS--LYVIGVSCTYDVFDQQFANFF  247 (417)
T ss_dssp             ---------------------CCCHHHHH--HHT-------------T-SSHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------cccccccc--ccc-------------c-cccccchh--hhhHHHHHHHHhhhccccccc
Confidence                                 00000000  000             0 00001111  111111111111111110000


Q ss_pred             EEecccccCCCCCCc-ccCccccccchhhHHHHHhhccccchhhhhhhccCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 007932          348 VKQGTTLNRSLSPSF-RIPAASLGSFVTLSMLLSVPMYDRYFVPFMRRRTGNPRGITMLQRLGVGFVIQVMAIAIAYAVE  426 (584)
Q Consensus       348 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~  426 (584)
                      ...    ....  .. ............++..++..+.+++.+|..+|           +.+.++.++.+++.+..... 
T Consensus       248 ~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~-----------~~~~~~~~~~~~~~~~~~~~-  309 (417)
T d1pv7a_         248 TSF----FATG--EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK-----------NALLLAGTIMSVRIIGSSFA-  309 (417)
T ss_dssp             TTS----SSCH--HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHH-----------HHHHHHHHHHHHHHHHHHTC-
T ss_pred             ccc----cccc--ccchhhhcccccccccccccchhhhhhhhcccccc-----------cchhhhHHHHHHhhhccccc-
Confidence            000    0000  00 00111222333444455555555554443333           44677777777766655543 


Q ss_pred             HhhhhhccccccCCCCCccceeehhhHHHHHHHHHHHHHHhhhceeeeeccCCchhHHHHHHHH-HHHHhHHHHHHHHHH
Q 007932          427 VRRMHVIRVQHISGPKQIVPMSIFWLLPQYVLLGVADVFNAIGLLEFFYDQSPEDMQSLGTTFF-TSGIGVGNFLNSFLV  505 (584)
Q Consensus       427 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~lg~~l~  505 (584)
                                          .+.+.++...++.+++.+...+....++.+.+|++.|+++.|+. ++...+|..+++.+.
T Consensus       310 --------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~  369 (417)
T d1pv7a_         310 --------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA  369 (417)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             --------------------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                34566777778889999999999999999999999999999985 456778999999998


Q ss_pred             HHhhhhhcCCCCCcccCCCCCccchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007932          506 TLVDKVTGRNGEKGWIGDNLNDCHLDYYYGFLMVISILNLGAFFWASSR  554 (584)
Q Consensus       506 ~~i~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~~~~  554 (584)
                      +.+.+..                ++...|++.+++.++..++..+..++
T Consensus       370 G~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         370 GNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHH----------------CHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8876432                34556778887777776665555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=3.8e-12  Score=131.67  Aligned_cols=181  Identities=14%  Similarity=0.086  Sum_probs=141.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHH
Q 007932           27 WKACAFLVGYEAFERMAFYGIQSNLVNYLTSQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYV  106 (584)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~  106 (584)
                      .+.++......++.....+++..+.+.|+.+.++.+..+.+.......++..++.+++|+++||+ +|++......+...
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~  326 (447)
T d1pw4a_         248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT  326 (447)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred             CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence            46677888888889999999999999999999999999999999999999999999999999998 88765554444333


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCcCCCCcchHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeeeh
Q 007932          107 LGMILLTMAASLKFMKPTCTNGICSKTSTSQIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWWM  186 (584)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  186 (584)
                      +...........               ...+.+...+..++.|++.+...+...++..|.+|++      .|+++.++.+
T Consensus       327 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~  385 (447)
T d1pw4a_         327 LVTIATIVYWMN---------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGFTG  385 (447)
T ss_dssp             HHHHHHHHTTSC---------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHH
Confidence            332222222110               1245666777777888888888889999999999988      6999999988


Q ss_pred             hHHhH-hHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHH
Q 007932          187 FSSFI-GALCATLGLVYIQENLGWGLGYGIPTAGLLFSLVIFYI  229 (584)
Q Consensus       187 ~~~~~-g~~~g~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~  229 (584)
                      ...++ |..++|.+.+++.+.+||+..|++.+...+++.++.+.
T Consensus       386 ~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         386 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            88777 55678999999999999999888777665555544443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.1e-11  Score=125.58  Aligned_cols=147  Identities=10%  Similarity=-0.043  Sum_probs=123.1

Q ss_pred             hhcCCchhhhhhHHHHHHHHHHHhhhHhHHHhhcccchhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcCCCCcc
Q 007932           57 SQLHEDTVSSVRNVNNWSGVVWITPLLGAYIADTYIGRFWTFTLSSLIYVLGMILLTMAASLKFMKPTCTNGICSKTSTS  136 (584)
Q Consensus        57 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~laD~~~Grk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (584)
                      +..+.+....+.......++..++..+.+++.||+ |||+.+.++.++..++.+++...                    +
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~--------------------~  310 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFA--------------------T  310 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTC--------------------C
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccc--------------------c
Confidence            34445566777778888889999999999999999 99999999999888887777765                    4


Q ss_pred             hHHHHHHHHHHHHHhcccccccccccccccCCCCChhhhcccceeeeee-hhHHhHhHHHHhhhhhhhhcccchhHHHHH
Q 007932          137 QIAFFYSSLYIIAIGAGGTKPNISTFGADQFDDFNPYERNLKVSFFNWW-MFSSFIGALCATLGLVYIQENLGWGLGYGI  215 (584)
Q Consensus       137 ~~~~~~~~~~~~gi~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~g~~~~~~l~~~~~~~~~f~~  215 (584)
                      +.+.+++..++.|++.+...+...+++.|.+|++      .|++..+.. +....+|..++|.+.|++.+..|++..|++
T Consensus       311 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~  384 (417)
T d1pv7a_         311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLV  384 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Confidence            5777888888999999999999999999999988      589999874 566779999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHh
Q 007932          216 PTAGLLFSLVIFYIG  230 (584)
Q Consensus       216 ~~~~~~~~~~~~~~~  230 (584)
                      .++..++..++..+.
T Consensus       385 ~~~~~~~~~~~~~~~  399 (417)
T d1pv7a_         385 LGLVALGFTLISVFT  399 (417)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            887766665555444