Citrus Sinensis ID: 007962

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
Protein Sequence
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEccccccccccHHHHHccccccccccccccccccEEEccccccccccHHccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHcccccccccccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccEEEccccccccccHHHcccccccEEEccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHcccccccccEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEccccccccccHHHHccccccEEEcccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccHHHHHcccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHccccccEEEccccccccccHHHHcccccccccHHHHccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEEcccccccccHHHcccccccEEEcccccccccccHHHHcHHcccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHccccccccEEEccccccccccHHHcccccHHHHHHHcccccccccccccccccccccHHHccccccEEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHcccccEEEEccccccccc
Coil and Loop (DISEMBL)
MDRILKAARtsgslnlsnrslrdvpnevyknfdeagegdkwwEAVDLQKLILAHNNIEKLKEDlrnlplltVLNVSHNKLSELPAAIGELHMlksldvsfnsimkipdeigSATALVkfdcssnqlkelpsslgrclnlsdfkasnncitslpedladcskmskldvegnkltVLSNNLIASWTMLTELIASKnllngmpetIGSLSRLIRLDLhqnrilsipssisgcCSLAefymgnnalsALPAElgklsklgtldlhSNQLKEYCVEACQLRLSVLDlsnnslsglppeigkMTTLRKLLLtgnplrtlrsslvngptpALLKYLRSrlpenedseasttkEDLITMATRLSVTSKELslegmnlsaipseiweageitkldlsrnsiqelppelsscASLQTLILSRnkikdwpdAILTSLsslsclkldnnplrqvpsdgfkdipmlqiLDLSyniaslpenppfsslphLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKnltslteldlsdnnisalppelgllepslqalrldgnplrsIRRTILDRGTKAVLKYLKDKIPEN
Flexible Loop (DISEMBL)
mdrilkaartsgslnlsnrslrdvpnEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRtlrsslvngptPALLKYLRsrlpenedseasttkedlitMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQAlrldgnplrsirrtildrgtkavlkylkdkipen
Low Complexity Region (SEG)
MDRILKAARTSGslnlsnrslrDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQlrlsvldlsnnslsglPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIltslsslsclklDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTdilrlqqlrildlSQNSLQSIPEGFKNLTSLTELDLSDNNISAlppelgllepslQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Disordered region (IsUnstruct)
***************************VYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL*************************************MNLSAIPSEIWEAGEITKLDL***********LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN*PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELD************LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL*******
Disordered Region (DISOPRED)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED*********LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKY*KDKI***
Disordered Region (DISEMBL)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL**********TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Disordered Region (DISPRO)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDxxxxxxxxxxxxxxxxxxxxxPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	583	2.2.26 [Sep-21-2011]
Q5ZLN0	603	Leucine-rich repeat-conta	yes	no	0.936	0.905	0.347	1e-74
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.939	0.905	0.349	3e-74
Q5M8G4	605	Leucine-rich repeat-conta	yes	no	0.941	0.907	0.349	3e-71
Q5RFE9	602	Leucine-rich repeat-conta	yes	no	0.939	0.910	0.346	1e-69
Q9H9A6	602	Leucine-rich repeat-conta	yes	no	0.939	0.910	0.346	2e-69
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.941	0.913	0.339	2e-69
Q4R3P6	602	Leucine-rich repeat-conta	N/A	no	0.939	0.910	0.346	5e-69
Q9CRC8	602	Leucine-rich repeat-conta	yes	no	0.938	0.908	0.342	2e-64
Q8AVI4	577	Leucine-rich repeat prote	N/A	no	0.648	0.655	0.300	7e-36
Q1L8Y7	561	Leucine-rich repeat prote	no	no	0.648	0.673	0.305	4e-35

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score =  281 bits (718), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 327/604 (54%), Gaps = 58/604 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +++AAR SG LNL+ R L +VP  V++ N D   EA      G  D+WWE  DL KLILA
Sbjct: 31  LIRAARKSGQLNLAGRGLGEVPQHVWRINLDTPEEAHQNLSFGAADRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N +  L ED+R LP LTVL+V  N+L+ LP+A+G+L  L+ LDVS N +  IP+E+   
Sbjct: 91  SNQLRCLSEDVRLLPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           + L       N+L  LP   G+ ++L +   SNN +T +P+  A    + +L++  N+L 
Sbjct: 151 SHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L  + I++   L +L  +KN L  +P  + S++ L +L L +N++ S+P  +  C  L 
Sbjct: 211 DLPAD-ISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLP-ELPSCKLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP 291
           E + G N +  L AE L  L+ L  L+L  N++K    E   L +L  LDL+NN +S LP
Sbjct: 269 ELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISRLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G ++ L+ L L GNPLRT+R  L+   T  LLKYLRSR+   +D +AS  +E  +T 
Sbjct: 329 YTLGNLSQLKFLALEGNPLRTIRRDLLQKGTQELLKYLRSRI---QDDKASPNEEPPVTA 385

Query: 352 AT-----RLSV----TSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPEL 399
            T     R+++    T K L      ++ IP +++ A     +T ++ S+N +  +PP +
Sbjct: 386 MTLPSESRINMHAITTLKLLDYSEKQVAVIPDDVFSAVRSNPVTSVNFSKNQLTAIPPRI 445

Query: 400 SSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                S+  +    NKI       L +L  L+ L + NN L  +P +  + +  LQ+++L
Sbjct: 446 VELKDSVCDVNFGFNKISSV-SLELCTLHKLTHLDIRNNVLTSLPEE-MEALTRLQVINL 503

Query: 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGF 517
           S+N                        + +  P+ + R+  L  + LS N + SI P   
Sbjct: 504 SFN------------------------RFKVFPSVLYRMLALETILLSNNQVGSIDPLQL 539

Query: 518 KNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 577
           K +  L  LDL +N++  +PPELG  E +L+ L L+GNP R+ R  IL +GT AVL+YL+
Sbjct: 540 KKMEQLGTLDLQNNDLLQVPPELGNCE-TLRTLLLEGNPFRTPRAAILAKGTAAVLEYLR 598

Query: 578 DKIP 581
            +IP
Sbjct: 599 SRIP 602

Gallus gallus (taxid: 9031)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score =  280 bits (715), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 211/604 (34%), Positives = 314/604 (51%), Gaps = 56/604 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L +VP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTEVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N+++ LP AI EL  L+ L++S N I ++P+E+   
Sbjct: 91  SNKLQALSEDISLLPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L  F    NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLRQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L+ L  LDLSNN +  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPKEISLLKGLERLDLSNNDIGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL--PENEDSEASTTKEDLI 349
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+  P+    EA+   +  +
Sbjct: 329 DTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQEAANPPDTAM 388

Query: 350 TMAT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELS 400
           T+ +         +T K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSDSVINAHAIMTLKTLEYCEKQASLIPEAVFNAAASSPITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI        +S+S   C+ L                  L  LD+ 
Sbjct: 449 EMKDSVYDVNLGFNKI--------SSISLNLCMLLK-----------------LTHLDMR 483

Query: 460 YN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGF 517
            N +ASLP  P   +L  LQ + L   + +  P  +  +  L  + +S N + SI P   
Sbjct: 484 NNALASLP--PEMEALTRLQSIILSFNRFKHFPDVLYTIPNLETILISSNQIGSIDPIQL 541

Query: 518 KNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 577
           K +T L+ LDL +N++  +PP LG  E SL+AL L+GNP R+ R TIL +GT A+L+YL+
Sbjct: 542 KKMTKLSTLDLQNNDLLQIPPALGNCE-SLRALHLEGNPFRNPRATILAKGTVAILEYLR 600

Query: 578 DKIP 581
            +IP
Sbjct: 601 SRIP 604

Xenopus laevis (taxid: 8355)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score =  270 bits (689), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 211/603 (34%), Positives = 307/603 (50%), Gaps = 54/603 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L DVP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTDVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N++  LP AI EL  L+ L++S N I ++P E+   
Sbjct: 91  SNKLQLLSEDISLLPALVVLDIHDNQIVSLPCAIKELTNLQKLNISHNKIKQLPKELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSISSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L  L  LDLSNN L  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSNNDLGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL-------PENEDSEAST- 343
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+        E+E+S A+  
Sbjct: 329 CTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKYLKGRVQVPDVKTQEDENSTATAM 388

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPELS 400
           T      + T   VT K L       S IP  ++ A     IT ++ S+N + E+P  + 
Sbjct: 389 TLPSESVVNTHAIVTLKTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVPARIV 448

Query: 401 SCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
               S+  + L  NKI       L  L  L+ + + NN L  +PS+  + +  LQ + LS
Sbjct: 449 EMKDSVCDVNLGFNKISSI-SLNLCMLLKLTHIDMRNNVLTSLPSE-MEAMTRLQSVILS 506

Query: 460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFK 518
           +N                        + +  P  + R+  L  + +S N + SI P    
Sbjct: 507 FN------------------------RFKHFPDVLYRIPTLETILISSNQIGSIDPTQLI 542

Query: 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 578
            +T L+ LDL +N++  +PP LG  E SL+AL L+GNP R+ R  IL +GT AVL+YL+ 
Sbjct: 543 KMTKLSTLDLQNNDLLQIPPALGNCE-SLRALHLEGNPFRNPRAAILAKGTVAVLEYLRS 601

Query: 579 KIP 581
           +IP
Sbjct: 602 RIP 604

Xenopus tropicalis (taxid: 8364)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score =  265 bits (676), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 322/601 (53%), Gaps = 53/601 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELQNLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQFSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 AT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +      R  +T K L       + IP E+++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIRAIITLKILDYSDKQATLIPDEVFDAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-VESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
                    F  LP +  LY              R+  L  + +S N + S+ P+  K +
Sbjct: 506 --------RFKMLPEV--LY--------------RIFTLETILISNNQVGSVDPQKMKMM 541

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 580
            +LT LDL +N++  +PPELG    +L+ L LDGNP R  R  IL +GT  +L+YL+D+I
Sbjct: 542 ENLTTLDLQNNDLLQIPPELGNC-VNLRTLLLDGNPFRVPRAAILMKGTAGILEYLRDRI 600

Query: 581 P 581
           P
Sbjct: 601 P 601

Pongo abelii (taxid: 9601)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score =  263 bits (673), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 322/601 (53%), Gaps = 53/601 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   LR L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  +++  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E+++A +   +T ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVDLSFNKL-SFISLELCVLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
                    F  LP +  LY              R+  L  + +S N + S+ P+  K +
Sbjct: 506 --------RFKMLPEV--LY--------------RIFTLETILISNNQVGSVDPQKMKMM 541

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 580
            +LT LDL +N++  +PPELG    +L+ L LDGNP R  R  IL +GT A+L+YL+D+I
Sbjct: 542 ENLTTLDLQNNDLLQIPPELGNC-VNLRTLLLDGNPFRVPRAAILMKGTAAILEYLRDRI 600

Query: 581 P 581
           P
Sbjct: 601 P 601

Homo sapiens (taxid: 9606)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score =  263 bits (673), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 204/601 (33%), Positives = 314/601 (52%), Gaps = 52/601 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R L +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct: 29  LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct: 89  SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct: 149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct: 209 SLP-PAISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLP-ELPCCKTLK 266

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E + GNN +  L AE L  L+ L  L+L  N++K    E   L+ L  LDL+NN +S LP
Sbjct: 267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct: 327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct: 387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
                     ++I D  D       SL+ + L  N L  +P+D F  +  L  +DL  N 
Sbjct: 441 ----------HRIVDLKD-------SLADINLGFNKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNL 520
           + SLP       L  L+ + L   + +  P  + R+  L  + +S N +  I     K L
Sbjct: 483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 580
           + L+ LDLS+N+I  +PPELG    SL+AL LDGNP R+ R  IL +GT AVL+YL+ +I
Sbjct: 541 SRLSTLDLSNNDIMQVPPELGNCT-SLRALMLDGNPFRNPRAAILIKGTDAVLEYLRSRI 599

Query: 581 P 581
           P
Sbjct: 600 P 600

Danio rerio (taxid: 7955)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score =  262 bits (670), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 320/601 (53%), Gaps = 53/601 (8%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+A+ EL  L+ L+VS N +   P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAMRELENLQKLNVSHNKLKIFPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESAAETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E++ A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFNAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             + + + LS NK+  +    L  L  L+ L L NN L  +P +  + +  LQ ++LS+N
Sbjct: 448 KEMVSDVNLSFNKL-SFISLELCMLQKLTFLDLRNNFLNSLPEE-MESLVRLQTINLSFN 505

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
                    F  LP +  LY              R+  L  + +S N + S+ P+  K +
Sbjct: 506 --------RFKMLPEV--LY--------------RIFTLETILISNNQVGSVDPQKMKMM 541

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 580
            +LT LDL +N++  +PPELG    +L+ L LDGNP R  R  IL +GT A+L+YL+D+I
Sbjct: 542 ENLTTLDLQNNDLLQIPPELGNC-VNLRTLLLDGNPFRVPRAAILIKGTAAILEYLRDRI 600

Query: 581 P 581
           P
Sbjct: 601 P 601

Macaca fascicularis (taxid: 9541)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score =  247 bits (630), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 315/602 (52%), Gaps = 55/602 (9%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
           +LKAAR+SG LNL+ R+L +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct: 31  LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct: 91  SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct: 151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P     C  L 
Sbjct: 211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLP-EFPSCRQLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++  N +  L AE L  L  +  LDL  N+L+    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct: 329 CSLGNL-HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query: 403 ASLQTLI-LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +   I LS NK        L+ +S   CL                 +  L  LDL  N
Sbjct: 448 KEMVLDINLSFNK--------LSFISHELCL-----------------LQKLTFLDLRNN 482

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKN 519
            ++SLPE    SSL  LQ + L   + +  P  + R+  L  + +S N + S+ P+  K 
Sbjct: 483 FLSSLPEE--MSSLTKLQTINLSFNRFKVFPEVLYRISTLEAVLISNNQVGSVDPQKMKL 540

Query: 520 LTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK 579
           + +L  LDL +N++  +PPELG     L+ L LDGNP R  R  IL +GT AVL+YL+D+
Sbjct: 541 MENLNTLDLQNNDLLQIPPELGNC-VQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDR 599

Query: 580 IP 581
           IP
Sbjct: 600 IP 601

Mus musculus (taxid: 10090)

>sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1

 Score =  152 bits (384), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 131/436 (30%), Positives = 210/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++DL+ LP LT+L
Sbjct: 169 LDLRHNKLREIPPVVYR-------------LSSLTTLFLRFNRITAVEKDLKMLPKLTML 215

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+  LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N+L +LP ++
Sbjct: 216 SIRENKIKHLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI 275

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P  L+ CS++ +L++E N ++ L   L++S   +  L  ++
Sbjct: 276 GNLSSLSRLGLRYNRLSAVPRSLSKCSELDELNLENNNISTLPEGLLSSLVKVNSLTLAR 335

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 336 NCFQSYP--VGGPSQFSSIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 393

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  + VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 394 GTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 453

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 454 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 477

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +  LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 478 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFE-LALCS 536

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 537 KLSIMSIENCPLSHLP 552

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Xenopus laevis (taxid: 8355)

>sp|Q1L8Y7|SHOC2_DANRE Leucine-rich repeat protein SHOC-2 OS=Danio rerio GN=shoc2 PE=2 SV=1

 Score =  149 bits (377), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 133/436 (30%), Positives = 213/436 (48%), Gaps = 58/436 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++D++NL  LT+L
Sbjct: 153 LDLRHNKLREIPAVVYR-------------VSSLTTLYLRFNRITTVEKDIKNLSKLTML 199

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+ +LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N L +LP ++
Sbjct: 200 SIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNDLLDLPETI 259

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +++      N ++++P  LA C ++ +L++E N ++VL   L++S   LT L  ++
Sbjct: 260 GNLASINRLGLRYNRLSAIPRSLAKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLAR 319

Query: 194 NLLNGMPETIGS---LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 320 NCFQSYP--VGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 377

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   + C L  L +L LSNN L  LP  IG +  LR+L L  N
Sbjct: 378 GTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLSNNLLKKLPYGIGNLRKLRELDLEEN 437

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 438 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 461

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLS 427
           L+ +P  I     +T L L  N +Q LP E+ +  +L+ L L+ N  +   P   L   S
Sbjct: 462 LTTLPRGIGHLTNLTYLGLGENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFE-LALCS 520

Query: 428 SLSCLKLDNNPLRQVP 443
            LS + ++N PL  +P
Sbjct: 521 KLSIMSIENCPLSHLP 536

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
224114980	580	predicted protein [Populus trichocarpa]	0.993	0.998	0.791	0.0
359493861	584	PREDICTED: leucine-rich repeat-containin	1.0	0.998	0.785	0.0
225461397	588	PREDICTED: leucine-rich repeat-containin	1.0	0.991	0.773	0.0
356549743	583	PREDICTED: leucine-rich repeat-containin	0.922	0.922	0.773	0.0
449431828	583	PREDICTED: leucine-rich repeat-containin	0.998	0.998	0.754	0.0
356544024	586	PREDICTED: leucine-rich repeat-containin	0.998	0.993	0.773	0.0
255575336	571	leucine-rich repeat-containing protein,	0.955	0.975	0.767	0.0
1946300	581	hypothetical protein [Silene latifolia]	0.994	0.998	0.733	0.0
30683597	584	leucine-rich repeat-containing protein [	0.998	0.996	0.725	0.0
297830120	584	leucine-rich repeat family protein [Arab	0.998	0.996	0.725	0.0

>gi|224114980|ref|XP_002316909.1| predicted protein [Populus trichocarpa] gi|222859974|gb|EEE97521.1| predicted protein [Populus trichocarpa]

 Score =  895 bits (2312), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/584 (79%), Positives = 512/584 (87%), Gaps = 5/584 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAAR+SGSLNLSNRSL +VP+EVYK  D  GEG+KWWE V+LQKLILAHNNIE +
Sbjct: 1   MDRVLKAARSSGSLNLSNRSLSEVPDEVYKILDAVGEGEKWWENVELQKLILAHNNIEAI 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NL  LTVLNVSHNKLS LPAAIGEL MLK LDVSFN I K+PDEIGSAT+LVKFD
Sbjct: 61  KEDLKNLSQLTVLNVSHNKLSALPAAIGELPMLKLLDVSFNLIQKVPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQL+ELPSSLG CL LSD KASNN ITSLPEDLA CSK++K+DVEGNKL VLS NL+
Sbjct: 121 CSSNQLRELPSSLGGCLALSDLKASNNSITSLPEDLARCSKLTKVDVEGNKLKVLSGNLM 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTE  ASKNLL+ +P+  GSLSRLIRLDLHQNRI +IP SI GCCSLAEFYMGNN
Sbjct: 181 ASWTMLTEFNASKNLLSDIPDNFGSLSRLIRLDLHQNRISTIPPSIMGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ALS LPAE+G LS+LGTLDLHSNQLKE   EAC+L+LS+LDLSNNSL+GLPPE+GKMTTL
Sbjct: 241 ALSTLPAEIGALSRLGTLDLHSNQLKEIPAEACKLQLSMLDLSNNSLTGLPPELGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLL GNPLRTLRSSLV+GPT  LL YLRSRL E EDS+A+T  K+DLI+M  RLSV+S
Sbjct: 301 RKLLLNGNPLRTLRSSLVSGPTATLLNYLRSRLSEGEDSKATTPAKKDLISMTARLSVSS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSL+G+ LSA+PSE+WE+ EI K+DLSRNSIQELP ELS C     LILSRNKI DWP
Sbjct: 361 KELSLQGLGLSAVPSEVWESNEIVKVDLSRNSIQELPLELSLCC----LILSRNKISDWP 416

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNN L Q+PSDGF+ +PMLQILDLS N ASL  +P FSSLPHL+E
Sbjct: 417 CAILKSLPNLICLKLDNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKE 476

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLR++QLRE P+DIL LQQL+IL+LSQNSL SIPEG KNLTSLTELDLSDNNISALPPE
Sbjct: 477 LYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPEGLKNLTSLTELDLSDNNISALPPE 536

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 583
           LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL DKIPE+
Sbjct: 537 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLMDKIPEH 580

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493861|ref|XP_003634682.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 2 [Vitis vinifera] gi|302143032|emb|CBI20327.3| unnamed protein product [Vitis vinifera]

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/584 (78%), Positives = 523/584 (89%), Gaps = 1/584 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT-KEDLITMATRLSVTS 359
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +EDSEA+TT KE+++TMA R+S+TS
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI++WP
Sbjct: 361 KELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKIQEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
             IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP LQE
Sbjct: 421 GVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLPQLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLRRMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ LPPE
Sbjct: 481 LYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIATLPPE 540

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 583
           LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE+
Sbjct: 541 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEH 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461397|ref|XP_002284846.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 1 [Vitis vinifera]

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/588 (77%), Positives = 520/588 (88%), Gaps = 5/588 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-----SEASTTKEDLITMATRL 355
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +E      + A+T KE+++TMA R+
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEGVFLFFTSATTAKENVVTMAARI 360

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           S+TSKELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ LILSRNKI
Sbjct: 361 SITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQALILSRNKI 420

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           ++WP  IL SL +LSCLKLDNNPLRQ+P+DGF+ +  LQILDLS N ASLP+NP FSSLP
Sbjct: 421 QEWPGVILKSLPNLSCLKLDNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLP 480

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
            LQELYLRRMQL E P+DIL LQQL+ILDLSQNSLQ IPEGFKNLTSLTEL+LSDN+I+ 
Sbjct: 481 QLQELYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPEGFKNLTSLTELNLSDNSIAT 540

Query: 536 LPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 583
           LPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE+
Sbjct: 541 LPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEH 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549743|ref|XP_003543250.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/582 (77%), Positives = 517/582 (88%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL ++P+EVY+N +  G  DKWWEA +LQKLILAHN+I  L
Sbjct: 1   MDRILKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGDDKWWEAAELQKLILAHNSIASL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLRNLP L+VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+KIP+EIGSA +LVK D
Sbjct: 61  KEDLRNLPFLSVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVKIPEEIGSAVSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+L ELPSSLGRCL LSD K SNN IT+LPEDLA+CSK+SKLD+EGN+LTV+S NLI
Sbjct: 121 CSNNRLTELPSSLGRCLELSDLKGSNNLITNLPEDLANCSKLSKLDMEGNRLTVMSENLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           +SWTMLTE  +SKNLLNG+P +IG LSRLIRLDLHQNRI +IPSSI GC SL E Y+GNN
Sbjct: 181 SSWTMLTEFNSSKNLLNGIPTSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTTL
Sbjct: 241 NISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
           RKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++ITMATRLS++SK
Sbjct: 301 RKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVITMATRLSISSK 360

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
           ELS+E + LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IKDWP 
Sbjct: 361 ELSMEELGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPG 420

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL 480
           +IL SLSSLSCLKLDNNPLRQ+PSDGF+ +P LQILDLS N ASL + P FSSLP+LQEL
Sbjct: 421 SILKSLSSLSCLKLDNNPLRQIPSDGFEMVPKLQILDLSGNAASLLDGPAFSSLPYLQEL 480

Query: 481 YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
           YLRRM+L E P+DI+ L QLRILDLSQNSLQSIP G K LTSL ELDLS+NNI+ LPPEL
Sbjct: 481 YLRRMRLSEVPSDIVGLHQLRILDLSQNSLQSIPVGLKALTSLQELDLSNNNIAVLPPEL 540

Query: 541 GLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 582
           GLLEPSLQALRLDGNPLRSIRRT+LD+GTKAVL+YLKDK+PE
Sbjct: 541 GLLEPSLQALRLDGNPLRSIRRTVLDKGTKAVLQYLKDKLPE 582

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431828|ref|XP_004133702.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus] gi|449478165|ref|XP_004155239.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/583 (75%), Positives = 504/583 (86%), Gaps = 1/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL DVP+EVY++ D     +KWWEAV+LQKLILAHNNI+ L
Sbjct: 1   MDRILKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
            E+LRNL  L VLNVSHNKLSELPAAIGEL  LK LDVSFNS+M+IPDEIGSAT+LVKFD
Sbjct: 61  SEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN L+ELP  LGRC +LSD KASNN I+SLP +LA+CSK++KLD+EGNKL V+S NLI
Sbjct: 121 CSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWT+LTEL ASKNLLN +PE IGSL RLIRL++ QN+I SIP SI  CC+LAE YMGNN
Sbjct: 181 ASWTLLTELNASKNLLNELPENIGSLLRLIRLNVFQNKISSIPPSIKDCCALAELYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ++S LP E+G LS LGTLDLHSNQLKEY VEAC+L L VLDLSNNSLSGLPPEIGKMTTL
Sbjct: 241 SVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE-DLITMATRLSVTS 359
           RKLLLTGNP+RTLRSSLV+GPTPALL++LRSRLPENE  EAS+T+  D+ITMA R+S+TS
Sbjct: 301 RKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG  LSA+PSE+WE+ E+ KLDLS+NS QELP ELSSC SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGQGLSAVPSEVWESSELMKLDLSKNSFQELPVELSSCTSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL +L +L+CLKLDNNPL+Q+PSDGF+ +  LQ+LDLS NIA LPE+P FSSLP LQE
Sbjct: 421 GAILKTLPNLTCLKLDNNPLKQIPSDGFQAVSKLQVLDLSGNIACLPEHPTFSSLPLLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLRRM+L E P+ IL L+ +RILDLSQNS+Q +PE  KNL +LTELDLSDNNIS LPP+
Sbjct: 481 LYLRRMRLHEVPSSILGLKHMRILDLSQNSIQLVPEELKNLAALTELDLSDNNISLLPPQ 540

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 582
           L LLEPSLQ LRLDGNPLRSIRR IL++GTKA+L YLKDK+ E
Sbjct: 541 LSLLEPSLQVLRLDGNPLRSIRRAILEKGTKAILAYLKDKLAE 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544024|ref|XP_003540456.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/583 (77%), Positives = 516/583 (88%), Gaps = 1/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGD-KWWEAVDLQKLILAHNNIEK 59
           MDR+LKAAR SGSLNLSNRSL ++P+EVY+N +  G GD KWWEAV+LQKLILAHN+I  
Sbjct: 1   MDRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGDDKWWEAVELQKLILAHNSIAS 60

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119
           LKEDLRNLP L VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+ IP+EIGSA +LVK 
Sbjct: 61  LKEDLRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVNIPEEIGSAMSLVKL 120

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+NQL ELPSSLGRCL LSD K SNN ITSLPEDLA+CSK+SKLD+EGNKLTV+S NL
Sbjct: 121 DCSNNQLTELPSSLGRCLELSDLKGSNNLITSLPEDLANCSKLSKLDMEGNKLTVISENL 180

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
           I+SWTMLTE  ASKNLLNG+P +IG LSRLIR+ +HQNRI +IPSSI GC SL E Y+GN
Sbjct: 181 ISSWTMLTEFNASKNLLNGIPTSIGGLSRLIRVYVHQNRISAIPSSIIGCHSLTELYLGN 240

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTT
Sbjct: 241 NNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTT 300

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           LRKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++I MATRLS+TS
Sbjct: 301 LRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVIAMATRLSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELS+EG+ LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQTLILS+N+IK+WP
Sbjct: 361 KELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKEWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            +IL SLSSLSCLKLDNNPL+Q+P DGF+ +P LQILDLS N ASL + P FSSLP+LQE
Sbjct: 421 GSILKSLSSLSCLKLDNNPLKQIPLDGFEVVPKLQILDLSGNAASLLDVPAFSSLPYLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLRRM+L E P+DI+ LQQLRILDLSQNSLQSIP G K+LTSL ELDLS+NNIS L PE
Sbjct: 481 LYLRRMRLSEVPSDIVGLQQLRILDLSQNSLQSIPVGLKDLTSLKELDLSNNNISVLLPE 540

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 582
           LGLLEPSLQALRLDGNPLRSIRRT+LDRGTKAVL+YLKDK+PE
Sbjct: 541 LGLLEPSLQALRLDGNPLRSIRRTVLDRGTKAVLQYLKDKLPE 583

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575336|ref|XP_002528571.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223532015|gb|EEF33826.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  846 bits (2185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/559 (76%), Positives = 492/559 (88%), Gaps = 2/559 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLR + +EVY++ D AGEG+KWWE V+LQKLILAHN+IE L
Sbjct: 1   MDRVLKAARTSGSLNLSNRSLRQL-HEVYRSSDAAGEGEKWWETVELQKLILAHNSIESL 59

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLR LP LTVLNVS+NKL+ LPAAIGEL +LKSLDVSFN I  +PDEIGSAT+LVKFD
Sbjct: 60  KEDLRLLPQLTVLNVSNNKLTALPAAIGELSLLKSLDVSFNMIQTVPDEIGSATSLVKFD 119

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQLKELP S+GRCL+LS+ K SNN ITS PEDLA C K++K+DVEGNKL   S NL+
Sbjct: 120 CSSNQLKELPGSVGRCLDLSELKVSNNLITSFPEDLAKCLKLTKVDVEGNKLQTFSENLM 179

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKNLL  +P+ +GSLSRLIRLD HQN+I SIP SI GCCSL EFYMGNN
Sbjct: 180 ASWTMLTELNASKNLLTCIPDNVGSLSRLIRLDFHQNKISSIPPSIKGCCSLLEFYMGNN 239

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS LPAE+G++S+L TLDLHSNQLKE+ VE C+L LSVLDLSNNSLSGLP EIG+MTTL
Sbjct: 240 LLSTLPAEIGEVSRLATLDLHSNQLKEFPVEGCKLHLSVLDLSNNSLSGLPLEIGRMTTL 299

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLLTGNPLRT+RSSLV+GPTPALL+YLRSRL E EDSEA+T  ++D+I MA+RLS+++
Sbjct: 300 RKLLLTGNPLRTIRSSLVSGPTPALLRYLRSRLSEGEDSEANTPPRKDVIAMASRLSIST 359

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KEL L G+ LSA+PSE+WE+GEI K+DLS+NSIQ+LP ELSSC SLQTLILS+NKI++WP
Sbjct: 360 KELFLVGLGLSAVPSEVWESGEIVKVDLSKNSIQKLPVELSSCVSLQTLILSKNKIQEWP 419

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SLS+LSCLKLDNNPLRQ+P DGF+ + MLQILDLS N AS+ E PPFS LPHLQE
Sbjct: 420 GAILKSLSNLSCLKLDNNPLRQIPLDGFQAVSMLQILDLSGNPASVCELPPFSKLPHLQE 479

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLR +QL E P+DIL L QLRILDLS+NSLQSIPEGFK+LTSLTELDLSDN+I+ALPPE
Sbjct: 480 LYLRHVQLHEVPSDILSLLQLRILDLSRNSLQSIPEGFKSLTSLTELDLSDNSIAALPPE 539

Query: 540 LGLLEPSLQALRLDGNPLR 558
           LG LEPSLQALRLDGNPLR
Sbjct: 540 LGFLEPSLQALRLDGNPLR 558

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1946300|emb|CAA73132.1| hypothetical protein [Silene latifolia]

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/581 (73%), Positives = 504/581 (86%), Gaps = 1/581 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLRDVP EVYKNFD A EG+ WWE VDLQKLILAHNNIE L
Sbjct: 1   MDRLLKAARTSGSLNLSNRSLRDVPIEVYKNFDGAPEGENWWETVDLQKLILAHNNIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NLPLLTVLNVSHNKL++LPAAIGEL  LKSLDVSFN +  IP EIGSAT+LVK D
Sbjct: 61  KEDLKNLPLLTVLNVSHNKLTQLPAAIGELPSLKSLDVSFNLLTNIPAEIGSATSLVKMD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+NQLKELPSSLG+CL+L++ KASNN I SLP+DLA C+K+ K+D+EGNKLT L + ++
Sbjct: 121 CSNNQLKELPSSLGQCLDLAELKASNNLIGSLPDDLAYCTKLLKVDIEGNKLTTLLDPVV 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
            SW+ML+EL ASKNLL G+PETIG+L RLIRLDLHQNRI SIPSSI GC SL EF++G+N
Sbjct: 181 GSWSMLSELNASKNLLTGLPETIGTLVRLIRLDLHQNRIKSIPSSIKGCSSLVEFFIGSN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+LP+ELG+LS+L  LDL SNQL EY  EAC+LRLSVLDLSNNSLSGLP EIG MT+L
Sbjct: 241 LLSSLPSELGELSQLSVLDLRSNQLTEYPAEACKLRLSVLDLSNNSLSGLPAEIGLMTSL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNP+RT+RS+LV GPT ALLKYLR RLP  E+++  T +K++++ MA+RLS+T+
Sbjct: 301 RKLVLIGNPMRTIRSTLVTGPTAALLKYLRGRLPSAEEAQVMTPSKDNMVAMASRLSITT 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSL GM L A+P E+ E+ EITK+DLS+NSIQELP  LS+C+SL+ LILSRNKIKDWP
Sbjct: 361 KELSLVGMGLIAVPPEVCESNEITKVDLSKNSIQELPVTLSACSSLEVLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
           +  L SL +L+CL+LDNNPL +VP +GF  +P LQILDLS  ++SL +NP F+SL HL E
Sbjct: 421 EDALKSLPNLTCLRLDNNPLNKVPLNGFDAVPRLQILDLSGCVSSLVDNPAFASLQHLVE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYLRR++L+E P+DIL L++L+ILDLSQNSL SIP+GF+NLTSLTELDLSDN+I  LPPE
Sbjct: 481 LYLRRVKLQEVPSDILMLRKLQILDLSQNSLHSIPQGFQNLTSLTELDLSDNSIGTLPPE 540

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 580
           LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVL+YLKDKI
Sbjct: 541 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLQYLKDKI 581

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683597|ref|NP_188160.2| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|21703129|gb|AAM74505.1| AT3g15410/MJK13_7 [Arabidopsis thaliana] gi|24111377|gb|AAN46812.1| At3g15410/MJK13_7 [Arabidopsis thaliana] gi|332642149|gb|AEE75670.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/583 (72%), Positives = 496/583 (85%), Gaps = 1/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  LQILDLS N  S  E+P F  LP L+E
Sbjct: 421 GAILKSLPNLMCLKLDNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+G KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKGIKNMTSLKHLDISNNNISSLPPE 540

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 582
           LGLLEP+L+ LRLDGNPLRSIRR IL+RGTKAVL YLKD++P+
Sbjct: 541 LGLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLNYLKDRLPD 583

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830120|ref|XP_002882942.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328782|gb|EFH59201.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  837 bits (2162), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/583 (72%), Positives = 497/583 (85%), Gaps = 1/583 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+I  L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPIEVYQCLETTGEGENWWEAVDLQKLILAHNDIAVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHN LS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNNLSQLPAAIGELTAMKSLDVSFNSITELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+ KELP S+GRCL+LSD KASNN I+SLPED+ +CSK+SKLDVEGN+LT LS N I
Sbjct: 121 CSSNRFKELPESIGRCLDLSDLKASNNQISSLPEDMVNCSKLSKLDVEGNRLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKN+L+G+P+ IGSLSRLIRLDLHQN+ILS+P SI  C SL EFY+G N
Sbjct: 181 ASWTMLTELNASKNMLSGLPQNIGSLSRLIRLDLHQNKILSVPPSIGDCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           KELSLEG+NLSA+PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQTLILSRNKIKDWP
Sbjct: 361 KELSLEGLNLSAVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQTLILSRNKIKDWP 420

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
            AIL SL +L CLKLDNNPL Q+P DGF+ +  L+ILDLS N  S  E+P F  LP LQE
Sbjct: 421 GAILKSLPNLVCLKLDNNPLTQIPLDGFQAVSGLRILDLSGNAVSFREHPKFCHLPQLQE 480

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYL R+QL E P DIL L  L ILDL+QNSLQSIP+  KN+TSL  LD+S+NNIS+LPPE
Sbjct: 481 LYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIPKSIKNMTSLKHLDISNNNISSLPPE 540

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPE 582
           LGLLEP+L+ LRLDGNPLRSIRR IL+RGTKAVL YLKD++P+
Sbjct: 541 LGLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLNYLKDRLPD 583

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.941	0.913	0.294	5.3e-56
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.948	0.918	0.307	2.1e-54
FB|FBgn0028487	693	f-cup "flyers-cup" [Drosophila	0.917	0.772	0.268	2.4e-39
WB|WBGene00004929	559	soc-2 [Caenorhabditis elegans	0.802	0.837	0.274	2.1e-36
UNIPROTKB|Q22875	559	soc-2 "Leucine-rich repeat pro	0.802	0.837	0.274	2.1e-36
UNIPROTKB|E1BU15	582	SHOC2 "Leucine-rich repeat pro	0.629	0.630	0.303	7.2e-36
DICTYBASE|DDB_G0294094	510	lrrA "leucine-rich repeat-cont	0.689	0.788	0.303	5.1e-35
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.620	0.645	0.301	9.7e-34
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.605	0.505	0.296	3.7e-33
UNIPROTKB|O61967	699	let-413 "Protein lap1" [Caenor	0.605	0.505	0.296	3.7e-33

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 177/601 (29%), Positives = 279/601 (46%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
             +LKAAR SG          +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct:    29 LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct:    89 SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct:   149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct:   209 SLPP-AISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPE-LPCCKTLK 266

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E + GNN +  L AE L  L+ L  L+L  N++K    E                    P
Sbjct:   267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct:   327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query:   352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P      
Sbjct:   387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVP------ 440

Query:   403 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
                       ++I D  D++              N L  +P+D F  +  L  +DL  N+
Sbjct:   441 ----------HRIVDLKDSLADINLGF-------NKLTTIPAD-FCHLKQLMHIDLRNNL 482

Query:   463 A-SLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNL 520
               SLP       L  L+ + L   + +  P              S N +  I     K L
Sbjct:   483 LISLPME--LEGLIKLRSVILSFNRFKSFPEVLYRIPSLETILISSNQVGGIDAVQMKTL 540

Query:   521 TSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 580
             + L+ LDLS+N+I              +AL LDGNP R+ R  IL +GT AVL+YL+ +I
Sbjct:   541 SRLSTLDLSNNDIMQVPPELGNCTSL-RALMLDGNPFRNPRAAILIKGTDAVLEYLRSRI 599

Query:   581 P 581
             P
Sbjct:   600 P 600

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 183/596 (30%), Positives = 279/596 (46%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
             +LKAAR+SG          +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct:    31 LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct:    91 SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
               L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct:   151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P   S C  L 
Sbjct:   211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPS-CRQLK 268

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E ++  N +  L AE L  L  +  LDL  N+L+    E A                  P
Sbjct:   269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct:   329 CSLGNLH-LKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI-- 409
              +   V          N+ AI +       +  LD S      +P +L   A+  TLI  
Sbjct:   388 PSEARV----------NIHAIAT-------LKLLDYSDKQATLIPDDLFD-ATKTTLITS 429

Query:   410 --LSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLP 466
                S+N++ + P  I              N L  + S     +  L  LDL  N ++SLP
Sbjct:   430 INFSKNQLCEIPQRIVELKEMVLDINLSFNKLSFI-SHELCLLQKLTFLDLRNNFLSSLP 488

Query:   467 ENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTE 525
             E    SSL  LQ + L   + +  P              S N + S+ P+  K + +L  
Sbjct:   489 EE--MSSLTKLQTINLSFNRFKVFPEVLYRISTLEAVLISNNQVGSVDPQKMKLMENLNT 546

Query:   526 LDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 581
             LDL +N++              + L LDGNP R  R  IL +GT AVL+YL+D+IP
Sbjct:   547 LDLQNNDL-LQIPPELGNCVQLRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIP 601

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0028487 f-cup "flyers-cup" [Drosophila melanogaster (taxid:7227)]

 Score = 425 (154.7 bits), Expect = 2.4e-39, P = 2.4e-39
 Identities = 149/555 (26%), Positives = 236/555 (42%)

Query:    37 EGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSL 96
             E D WW  V L  L L+ N +  +   + NL  LTVL +  N L ELP  IG+L  L  L
Sbjct:   148 EEDAWWNQVPLNNLDLSSNTLTHISPKIENLQSLTVLTLHDNALVELPPEIGKLEKLVRL 207

Query:    97 DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL 156
             +VS N + ++P  + S   L   + S N+  EL   +     L      +N I SLP  +
Sbjct:   208 NVSHNKLSQLPRAMYSLPELRHLNISYNEFVELNPDISDLHMLEFLDGGHNNIQSLPGGI 267

Query:   157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
                 +++ L +  N +  L  +L+ +   L ++    N L  +PE +G L +L  L L  
Sbjct:   268 GFLVRLTALLLPYNHIKELPPDLV-NMRSLQKIDLMHNDLTSLPEDMGLLRKLDCLYLQH 326

Query:   217 NRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQX 275
             N IL +P    G  +L E +  NN +  +P A    L  L  LDL  N++ E   E C  
Sbjct:   327 NDILELPE-FEGNEALNELHASNNFIKIIPKAMCSNLPHLKILDLRDNKITELPDELCLL 385

Query:   276 XXXXXXXXXXXXXXX-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
                             P  +  +  L  L + GNP++T+R  ++   T  +LK L  R  
Sbjct:   386 RNLNRLDVSNNTISVLPVTLSSLAHLISLQVEGNPIKTIRRDILQCGTTRILKTLHDRAV 445

Query:   335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI--TK-LDLSRNS 391
                  E     +D  T A  +SVT   L    M+   IP    +  ++  T+ L ++   
Sbjct:   446 AKAKEEGGGV-DDASTSAG-ISVT--RLRGGQMDDGDIPGNFPDRYKLRHTRTLAVNLEE 501

Query:   392 IQELPPELSSCA---SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFK 448
             +  +P ++   A    +  +  +RN++   P+ +             NN +  VP     
Sbjct:   502 LTSVPDQVFQIARDEGVHVVDFARNQLSTLPNGLQHMKDLVTELVLSNNVIGYVPQF-IS 560

Query:   449 DIPMLQILDLSYNIAS-LPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQ 507
                 +  L+LS N+ + LP    F  L  L+EL +   +    P              S+
Sbjct:   561 QFTRISFLNLSNNLLNDLPTE--FGVLNTLRELNIANNRFPCIPNCVYELQGLEILIASE 618

Query:   508 NSLQSIP-EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 566
             N ++ +   G +N+  L+ LDL +N+I                L L GNP R  R  IL 
Sbjct:   619 NHIKMLNVSGLQNMRRLSTLDLRNNDIETVPPILGNLTNITH-LELVGNPFRQPRHQILM 677

Query:   567 RGTKAVLKYLKDKIP 581
             +GT A++ YL+D+IP
Sbjct:   678 KGTDAIMSYLRDRIP 692

GO:0007265 "Ras protein signal transduction" evidence=ISS

WB|WBGene00004929 soc-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 135/491 (27%), Positives = 220/491 (44%)

Query:    96 LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
             LD+S   I  IP  I   T L +     N+L  LP+ +G+ +NL     S N +TSLP+ 
Sbjct:    78 LDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNLKKLGLSENALTSLPDS 137

Query:   156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             LA    +  LD+  NKLT + + +I     L  L    N +  + E IG+LS+L  LD+ 
Sbjct:   138 LASLESLETLDLRHNKLTEVPS-VIYKIGSLETLWLRYNRIVAVDEQIGNLSKLKMLDVR 196

Query:   216 QNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE--YCVEAC 273
             +N+I  +PS+I    SL    +  N L+ +P E+G    L  LDL  N L E  Y +   
Sbjct:   197 ENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSLTQLDLQHNDLSELPYSIGKL 256

Query:   274 QXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
                              P E+     L + ++  N L+ L  +L+      L K     L
Sbjct:   257 -VNLVRIGIRYNKIRCIPSELESCQQLEEFIVESNHLQLLPPNLLT----MLPKIHTVNL 311

Query:   334 PENE-DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNS 391
               NE  +  +   +  ++  T        +++E   +S IP  I+ +A  +TKL+L  N 
Sbjct:   312 SRNELTAFPAGGPQQFVSTVT--------INMEHNQISKIPIGIFSKATRLTKLNLKENE 363

Query:   392 IQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
             +  LP ++ S  S+  L LS N++K  P+ I             NN L+++P+    ++ 
Sbjct:   364 LVSLPLDMGSWTSITELNLSTNQLKVLPEDIEKLVNLEILVLS-NNQLKKLPNQ-IGNLN 421

Query:   452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSL 510
              L+ LDL  N + ++P    F  L HL +L+++  ++   P               +N+L
Sbjct:   422 KLRELDLEENELETVPTEIGF--LQHLTKLWVQSNKILTLPRSIGNLCSLQDLRLGENNL 479

Query:   511 QSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTK 570
              +IPE   +L SL  L L+DN+               + + ++ +PL  I   I   G  
Sbjct:   480 TAIPEEIGHLDSLKSLYLNDNSSLHNLPFELALCQSLEIMSIENSPLSQIPPEITAGGPS 539

Query:   571 AVLKYLKDKIP 581
              V++YLK + P
Sbjct:   540 LVIQYLKMQGP 550

GO:0002119 "nematode larval development" evidence=IMP

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI

GO:0007517 "muscle organ development" evidence=IMP

GO:0031344 "regulation of cell projection organization" evidence=IMP

UNIPROTKB|Q22875 soc-2 "Leucine-rich repeat protein soc-2" [Caenorhabditis elegans (taxid:6239)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 135/491 (27%), Positives = 220/491 (44%)

Query:    96 LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
             LD+S   I  IP  I   T L +     N+L  LP+ +G+ +NL     S N +TSLP+ 
Sbjct:    78 LDLSSIEITSIPSPIKELTQLTELFLYKNKLTCLPTEIGQLVNLKKLGLSENALTSLPDS 137

Query:   156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             LA    +  LD+  NKLT + + +I     L  L    N +  + E IG+LS+L  LD+ 
Sbjct:   138 LASLESLETLDLRHNKLTEVPS-VIYKIGSLETLWLRYNRIVAVDEQIGNLSKLKMLDVR 196

Query:   216 QNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE--YCVEAC 273
             +N+I  +PS+I    SL    +  N L+ +P E+G    L  LDL  N L E  Y +   
Sbjct:   197 ENKIRELPSAIGKLTSLVVCLVSYNHLTRVPEEIGDCHSLTQLDLQHNDLSELPYSIGKL 256

Query:   274 QXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
                              P E+     L + ++  N L+ L  +L+      L K     L
Sbjct:   257 -VNLVRIGIRYNKIRCIPSELESCQQLEEFIVESNHLQLLPPNLLT----MLPKIHTVNL 311

Query:   334 PENE-DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNS 391
               NE  +  +   +  ++  T        +++E   +S IP  I+ +A  +TKL+L  N 
Sbjct:   312 SRNELTAFPAGGPQQFVSTVT--------INMEHNQISKIPIGIFSKATRLTKLNLKENE 363

Query:   392 IQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
             +  LP ++ S  S+  L LS N++K  P+ I             NN L+++P+    ++ 
Sbjct:   364 LVSLPLDMGSWTSITELNLSTNQLKVLPEDIEKLVNLEILVLS-NNQLKKLPNQ-IGNLN 421

Query:   452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSL 510
              L+ LDL  N + ++P    F  L HL +L+++  ++   P               +N+L
Sbjct:   422 KLRELDLEENELETVPTEIGF--LQHLTKLWVQSNKILTLPRSIGNLCSLQDLRLGENNL 479

Query:   511 QSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTK 570
              +IPE   +L SL  L L+DN+               + + ++ +PL  I   I   G  
Sbjct:   480 TAIPEEIGHLDSLKSLYLNDNSSLHNLPFELALCQSLEIMSIENSPLSQIPPEITAGGPS 539

Query:   571 AVLKYLKDKIP 581
              V++YLK + P
Sbjct:   540 LVIQYLKMQGP 550

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IMP

GO:0040025 "vulval development" evidence=IMP

UNIPROTKB|E1BU15 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 389 (142.0 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 117/386 (30%), Positives = 190/386 (49%)

Query:    42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             +    L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N
Sbjct:   189 YRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHN 248

Query:   102 SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161
              +  +P+EIGS T +   D   N+L +LP ++G   +LS      N ++++P+ LA CS+
Sbjct:   249 QLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAKCSE 308

Query:   162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRIL 220
             + +L++E N ++ L   L++S   LT L  ++N     P    S  S +  L++  NRI 
Sbjct:   309 LDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRIN 368

Query:   221 SIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXX 279
              IP  I S    L++  M +N L++LP + G  + +  L+L +NQL +   +        
Sbjct:   369 KIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLE 428

Query:   280 XXXXXXXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                         P  IG +  LR+L L  N L +L + +      A LK L+  +  N  
Sbjct:   429 VLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQ 482

Query:   339 SEASTTKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELP 396
                 TT    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP
Sbjct:   483 L---TTLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLP 534

Query:   397 PELSSCASLQTLILSRNKIKDWPDAI 422
              EL+ C+ L  + +    +   P  I
Sbjct:   535 FELALCSKLSIMSIENCPLSHLPPQI 560

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 128/422 (30%), Positives = 190/422 (45%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA--IGELHMLKSLDVSFNSIMKIPDEI 110
             A N I  +  ++ +L  L  L +S+NKL   P    IG L  L  LD+S N +  +P EI
Sbjct:    68 AKNRINYIPPEIGSLATLKQLFLSNNKLFYTPITPNIGALKNLTRLDLSSNQLDDLPVEI 127

Query:   111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
              +  AL   D S NQL+  P   G+  NL  F  S N + SLP +++   K+ +L+V  N
Sbjct:   128 SNCEALEYLDISDNQLQSFPLEFGKLYNLQVFNCSKNSLKSLPSEISGWVKLEELNVSNN 187

Query:   171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
             +L  L N  I    +L+ L    N L  +PE + S+  L  LDL  N  L     +S   
Sbjct:   188 QLAFLPNQ-ICLLGLLSTLNVGFNKLQQLPEELSSMVSLTNLDLKVNPPLQYVPQLSNLR 246

Query:   231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSN-QLKEYCVE-ACQXXXXXXXXXXXXXX 288
              L    + N  ++ LP  LG LS+L  LD+  N QLKE   + A                
Sbjct:   247 QLKILSIRNLQITHLPLGLGLLSELIELDIRDNPQLKEIPYDIATLINLQKLDLFGNNMR 306

Query:   289 XXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP-ALLKYLRSRLPENEDSEASTTKED 347
               P E+G +  L+ L L  N L     ++ N P+    L  L+  L  N    A     +
Sbjct:   307 IVPREVGNLINLQTLDLRQNKL-----TIDNIPSEIGKLVNLKKLLLSNNLLIA--LPPE 359

Query:   348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
             + +M        KE       L AIP+EI E   +TK++LS N +  +P    + + LQ 
Sbjct:   360 IASMKAL-----KEFEASNNQLQAIPTEIGELSGLTKINLSGNKLTSIPASFGNLSELQI 414

Query:   408 LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
               L  N+I + P  +             +N L ++P + F D+  L ILD+ +N  ++P 
Sbjct:   415 CDLKSNEIAELPTTLDGLKSCTKIDLS-HNMLTELPWE-FGDLIGLTILDVGHNPLTIPP 472

Query:   468 NP 469
             NP
Sbjct:   473 NP 474

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0043326 "chemotaxis to folate" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 377 (137.8 bits), Expect = 9.7e-34, P = 9.7e-34
 Identities = 115/381 (30%), Positives = 185/381 (48%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   173 LTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 232

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N L +LP ++G   +++      N ++++P  LA C ++ +L+
Sbjct:   233 PKEIGNCTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELN 292

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++VL   L++S   LT L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   293 LENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFG 352

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   + C           
Sbjct:   353 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLS 412

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  IG +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   413 NNLLKKLPYGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 463

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL   +P EI     +  L L+ N ++  LP EL+ 
Sbjct:   464 TLPRGIGHLTNLTY----LGL-GENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELAL 518

Query:   402 CASLQTLILSRNKIKDWPDAI 422
             C+ L  + +    +   P  I
Sbjct:   519 CSKLSIMSIENCPLSHLPPQI 539

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 3.7e-33, P = 3.7e-33
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|O61967 let-413 "Protein lap1" [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 3.7e-33, P = 3.7e-33
 Identities = 109/368 (29%), Positives = 176/368 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L  L ++
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVLDVA 366

Query:   412 RNKIKDWP 419
              NK+   P
Sbjct:   367 SNKLPHLP 374

GO:0045108 "regulation of intermediate filament polymerization or depolymerization" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEP

GO:0015031 "protein transport" evidence=IEP

GO:0005912 "adherens junction" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CRC8	LRC40_MOUSE	No assigned EC number	0.3421	0.9382	0.9086	yes	no
Q9H9A6	LRC40_HUMAN	No assigned EC number	0.3460	0.9399	0.9102	yes	no
Q5M8G4	LRC40_XENTR	No assigned EC number	0.3499	0.9416	0.9074	yes	no
Q5ZLN0	LRC40_CHICK	No assigned EC number	0.3476	0.9365	0.9054	yes	no
Q5RFE9	LRC40_PONAB	No assigned EC number	0.3460	0.9399	0.9102	yes	no
Q7SXW3	LRC40_DANRE	No assigned EC number	0.3394	0.9416	0.9134	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110941	hypothetical protein (581 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.8595.1.1	hypothetical protein (375 aa)			•						0.490
	eugene3.00410223	hypothetical protein (478 aa)			•						0.488
	eugene3.00131095	annotation not avaliable (394 aa)			•						0.484
	eugene3.00190610	annotation not avaliable (370 aa)			•						0.483
	fgenesh4_pg.C_LG_XVIII001032	hypothetical protein (534 aa)			•						0.478
	eugene3.100750001	hypothetical protein (275 aa)			•						0.478
	fgenesh4_pg.C_scaffold_11988000001	hypothetical protein (315 aa)			•						0.455
	fgenesh4_pg.C_scaffold_13412000001	hypothetical protein (444 aa)			•						0.453
	eugene3.06320001	hypothetical protein (344 aa)			•						0.450
	gw1.XI.3221.1	hypothetical protein (380 aa)			•						0.445

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	583
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-27
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-19
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-16
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-15
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	5e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-11
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	3e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	7e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.004
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (299), Expect = 5e-28
 Identities = 137/489 (28%), Positives = 216/489 (44%), Gaps = 53/489 (10%)

Query: 66  NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSS 123
           N   +  +++S   +S ++ +AI  L  ++++++S N +   IPD+I + ++ +++   S
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           N         G   NL     SNN ++  +P D+   S +  LD+ GN   VL   +  S
Sbjct: 127 NNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN---VLVGKIPNS 183

Query: 183 WTMLTEL----IASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM 237
            T LT L    +AS  L+  +P  +G +  L  + L  N +   IP  I G  SL    +
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243

Query: 238 GNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE- 293
             N L+  +P+ LG L  L  L L+ N+L      +     +L  LDLS+NSLSG  PE 
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           + ++  L  L L  N           G  P  L    + LP                   
Sbjct: 304 VIQLQNLEILHLFSNNF--------TGKIPVAL----TSLP------------------- 332

Query: 354 RLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILS 411
           RL V    L L     S  IP  + +   +T LDLS N++  E+P  L S  +L  LIL 
Sbjct: 333 RLQV----LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
            N ++      L +  SL  ++L +N         F  +P++  LD+S N      N   
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 472 SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSD 530
             +P LQ L L R +      D    ++L  LDLS+N    ++P    +L+ L +L LS+
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508

Query: 531 NNISALPPE 539
           N +S   P+
Sbjct: 509 NKLSGEIPD 517

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  118 bits (296), Expect = 1e-27
 Identities = 144/465 (30%), Positives = 216/465 (46%), Gaps = 32/465 (6%)

Query: 67  LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN 124
           +P L  L++S+N LS E+P  IG    LK LD+  N ++ KIP+ + + T+L     +SN
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 125 QL-KELPSSLGRCLNLS-DFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           QL  ++P  LG+  +L   +   NN    +P ++   + ++ LD+  N LT    + + +
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYM-GN 239
              L  L   +N L+G +P +I SL +LI LDL  N +   IP  +    +L   ++  N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVE--ACQLRLSVLDLSNNSLSG-LPPEIGK 296
           N    +P  L  L +L  L L SN+      +       L+VLDLS N+L+G +P  +  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS----RLPENEDSEASTTKEDLITMA 352
              L KL+L  N L         G  P  L   RS    RL +N  S       +L +  
Sbjct: 379 SGNLFKLILFSNSL--------EGEIPKSLGACRSLRRVRLQDNSFSG------ELPSEF 424

Query: 353 TRLSVTSKELSLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILS 411
           T+L +    L +   NL   I S  W+   +  L L+RN      P+      L+ L LS
Sbjct: 425 TKLPLVYF-LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLS 483

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           RN+        L SLS L  LKL  N L     D       L  LDLS+N  S      F
Sbjct: 484 RNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASF 543

Query: 472 SSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIP 514
           S +P L +L L + QL  E P ++  ++ L  +++S N L  S+P
Sbjct: 544 SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.3 bits (224), Expect = 9e-19
 Identities = 92/282 (32%), Positives = 139/282 (49%), Gaps = 24/282 (8%)

Query: 46  DLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           +L+ L L  NN   K+   L +LP L VL +  NK S E+P  +G+ + L  LD+S N++
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 104 M-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS 160
             +IP+ + S+  L K    SN L+ E+P SLG C +L   +  +N  +  LP +     
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
            +  LD+  N L    N+       L  L +A      G+P++ GS  RL  LDL +N+ 
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQF 487

Query: 220 L-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLK--------EYC 269
             ++P  +     L +  +  N LS  +P EL    KL +LDL  NQL         E  
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 270 VEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310
           V      LS LDLS N LSG +P  +G + +L ++ ++ N L
Sbjct: 548 V------LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 79.2 bits (195), Expect = 9e-16
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 44  AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           AV+   L L+ N +  L   L  L  L +L+ S     +    +  L  L SLD++ N +
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGR-CLNLSDFKASNNCITSLPEDLADCSKM 162
                E+   T L   D  +N + ++P  +G    NL +   S+N I SLP  L +   +
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             LD+  N L+ L   L    + L  L  S N ++ +P  I  LS L  LDL  N I+ +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
            SS+S   +L+   + NN L  LP  +G LS L TLDL +NQ+           L  LDL
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 283 SNNSLSGLPPEIGKMTTLRKLLL 305
           S NSLS   P I  +  L +LLL
Sbjct: 285 SGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 77.7 bits (191), Expect = 3e-15
 Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 26/292 (8%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM-LKSLDVSFNSIM 104
            L  L L  N +     +L  L  LT L++ +N ++++P  IG L   LK LD+S N I 
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
            +P  + +   L   D S N L +LP  L    NL++   S N I+ LP ++   S    
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA--- 210

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
                                L EL  S N +  +  ++ +L  L  L+L  N++  +P 
Sbjct: 211 ---------------------LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
           SI    +L    + NN +S++ + LG L+ L  LDL  N L         L L +  L N
Sbjct: 250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
             L+    E+   + L    +  N   +   +L    +   L  L + L E+
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDES 360

Length = 394

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 71.7 bits (175), Expect = 5e-13
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAV------DLQKLILAHNNIEKLKEDLRN 66
           +L L N  L+ +P  +  N            ++       +Q++ L+ N I +L E L +
Sbjct: 203 TLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPS 262

Query: 67  LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
              L  L++ HNK+S LP  + E   L+ L V  NSI  +P  + S   +   +  SN L
Sbjct: 263 A--LQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP +L     L   +A  N +TSLP  L    ++  LDV  N++TVL   L  +   +
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPT---I 369

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           T L  S+N L  +PE + +  ++  +   +N ++ +P S+
Sbjct: 370 TTLDVSRNALTNLPENLPAALQI--MQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 66.6 bits (162), Expect = 2e-11
 Identities = 70/246 (28%), Positives = 113/246 (45%), Gaps = 21/246 (8%)

Query: 310 LRTLRSSLVNGPTPALLKYLR-SRLPENEDSEAST---TKEDLITMATRLSVTSKELSLE 365
           ++ +R  L N  T   LK L  + +P     + +T      +L ++   L    K L   
Sbjct: 169 VQRMRDCLKNNKTELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQGNIKTLYAN 228

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
              L++IP+ + +   I +++LS N I ELP  L S  +LQ+L L  NKI   P+ +   
Sbjct: 229 SNQLTSIPATLPDT--IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPEE 284

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485
           L  LS      N +R +P+     I  L +   S  + +LPE  P    P L+ L     
Sbjct: 285 LRYLSVYD---NSIRTLPAHLPSGITHLNVQSNS--LTALPETLP----PGLKTLEAGEN 335

Query: 486 QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEP 545
            L   P  +    +L++LD+S+N +  +PE      ++T LD+S N ++ LP  L     
Sbjct: 336 ALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPAALQ 391

Query: 546 SLQALR 551
            +QA R
Sbjct: 392 IMQASR 397

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 27/220 (12%)

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +N+LK LP +L    N+    A++N +TS+P  L D  +  +L +  N++T L   L ++
Sbjct: 208 NNELKSLPENLQG--NIKTLYANSNQLTSIPATLPDTIQEMELSI--NRITELPERLPSA 263

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
              L  L    N ++ +PE +     L  L ++ N I ++P+ +     +    + +N+L
Sbjct: 264 ---LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
           +ALP  L     L TL+   N L      +    L VLD+S N ++ LP  +    T+  
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSL-PASLPPELQVLDVSKNQITVLPETLPP--TITT 371

Query: 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRS------RLPEN 336
           L ++ N L  L  +L     PA L+ +++      RLPE+
Sbjct: 372 LDVSRNALTNLPENL-----PAALQIMQASRNNLVRLPES 406

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.6 bits (157), Expect = 5e-11
 Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 3/178 (1%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             L+LS N++  LP  LS   SL  L  S     D  +  L +L  L  L L+ N LR  
Sbjct: 50  LALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSEN-LLNLLPLPSLDLNLNRLRSN 108

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502
            S    ++  L  LDL  N  +           +L+EL L   ++   P+ +  L  L+ 
Sbjct: 109 IS-ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKN 167

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
           LDLS N L  +P+   NL++L  LDLS N IS LPPE+ LL  +L+ L L  N +  +
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLS-ALEELDLSNNSIIEL 224

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 96/372 (25%), Positives = 143/372 (38%), Gaps = 43/372 (11%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
             L    +NL +       L  S N L  +P ++  L  L  L       L    ++   
Sbjct: 33  INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSL 287
             L    +  N L +  +EL +L+ L +LDL +N + +    +   +  L  LDLS+N +
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
             LP  +  +  L+ L L+ N L  L   L N                            
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL------------------------ 188

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         L L G  +S +P EI     + +LDLS NSI EL   LS+  +L  
Sbjct: 189 ------------NNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236

Query: 408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
           L LS NK++D P+  + +LS+L  L L NN +  + S     +  L+ LDLS N  S   
Sbjct: 237 LELSNNKLEDLPE-SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA- 292

Query: 468 NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELD 527
             P  +L  L    L  + L     ++     L   ++  N   S PE    L SL  L 
Sbjct: 293 -LPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLW 351

Query: 528 LSDNNISALPPE 539
             DN +      
Sbjct: 352 TLDNALDESNLN 363

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 6e-10
 Identities = 84/271 (30%), Positives = 127/271 (46%), Gaps = 18/271 (6%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
            L+LS+N+L  LP  + ++ +L  L  +G        +L+N      L    +RL  N  
Sbjct: 51  ALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNIS 110

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPP 397
                T                 L L+  N++ IP  I      + +LDLS N I+ LP 
Sbjct: 111 ELLELTN-------------LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS 157

Query: 398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
            L +  +L+ L LS N + D P  +L++LS+L+ L L  N +  +P +       L+ LD
Sbjct: 158 PLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNKISDLPPEIELLSA-LEELD 215

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 517
           LS N + +      S+L +L  L L   +L + P  I  L  L  LDLS N + SI    
Sbjct: 216 LSNN-SIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS-SL 273

Query: 518 KNLTSLTELDLSDNNISALPPELGLLEPSLQ 548
            +LT+L ELDLS N++S   P + LL   L+
Sbjct: 274 GSLTNLRELDLSGNSLSNALPLIALLLLLLE 304

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+++ L  N+   +L  +   LPL+  L++S+N L   + +   ++  L+ L ++ N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 105 -KIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161
             +PD  GS   L   D S NQ    +P  LG    L   K S N ++  +P++L+ C K
Sbjct: 466 GGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
           +  LD+  N+L+       +   +L++L  S+N L+G +P+ +G++  L+++++  N + 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 221 -SIPSS 225
            S+PS+
Sbjct: 585 GSLPST 590

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 70/210 (33%), Positives = 105/210 (50%), Gaps = 8/210 (3%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELS-SCASLQTLILSRNKIK 416
               L L    L +  SE+ E   +T LDL  N+I ++PP +    ++L+ L LS NKI+
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP- 475
             P  +  +L +L  L L  N L  +P     ++  L  LDLS N   + + PP   L  
Sbjct: 154 SLPSPLR-NLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSGNK--ISDLPPEIELLS 209

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
            L+EL L    + E  + +  L+ L  L+LS N L+ +PE   NL++L  LDLS+N IS+
Sbjct: 210 ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269

Query: 536 LPPELGLLEPSLQALRLDGNPLRSIRRTIL 565
           +     L   +L+ L L GN L +    I 
Sbjct: 270 ISSLGSL--TNLRELDLSGNSLSNALPLIA 297

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 499 QLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557
            L+ LDLS N L  IP+G FK L +L  LDLS NN++++ PE     PSL++L L GN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 3/69 (4%)

Query: 491 PTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPE-LGLLEPSLQ 548
           P DI +L+ L+ ++LS NS++ +IP    ++TSL  LDLS N+ +   PE LG L  SL+
Sbjct: 435 PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-SLR 493

Query: 549 ALRLDGNPL 557
            L L+GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.6 bits (134), Expect = 6e-08
 Identities = 62/179 (34%), Positives = 90/179 (50%), Gaps = 9/179 (5%)

Query: 385 LDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR-QV 442
           LDLS N +  E+P ++ S +SL+ L L  N +       LT+L+SL  L L +N L  Q+
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 443 PSDGFKDIPMLQILDLSYNIAS--LP-ENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
           P +    +  L+ + L YN  S  +P E    +SL HL  +Y         P+ +  L+ 
Sbjct: 205 PRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY--NNLTGPIPSSLGNLKN 261

Query: 500 LRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557
           L+ L L QN L   IP    +L  L  LDLSDN++S   PEL +   +L+ L L  N  
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 48.3 bits (116), Expect = 1e-07
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 476 HLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533
           +L+ L L   +L   P    + L  L++LDLS N+L SI    F  L SL  LDLS NN+
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 53.6 bits (128), Expect = 2e-07
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L++  N L+ LPA    L  L        S+  +P        L +   S NQL 
Sbjct: 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP------PGLQELSVSDNQLA 315

Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   +   ++S  D +   L  L + L   W    
Sbjct: 316 SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 372

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLD----------LHQNRILSIPSSISGCCSLAEFYM 237
            L +   L +G+ E I S +RL  L           +  NR+ S+P   SG  SL+ +  
Sbjct: 373 RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY-- 430

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
             N L+ LP  L  LS   T++L  N L E  ++A
Sbjct: 431 -RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 52.1 bits (124), Expect = 6e-07
 Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           +T L +  N L+ LPA   E   L++L+VS N +  +P        L  F      L  L
Sbjct: 224 ITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 280

Query: 130 PSSLGRCL--------------NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           PS L +                 L +   S+N + SLP   A  S++ KL    N+LT  
Sbjct: 281 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT-- 335

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
             +L    + L EL  S N L  +P      S L +L  + NR+ S+P+  SG   L E 
Sbjct: 336 --SLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSG---LKEL 387

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEI 294
            +  N L++LP      S+L  L +  N+L     + +  L LSV     N L+ LP  +
Sbjct: 388 IVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESL 441

Query: 295 GKMTTLRKLLLTGNPL--RTLRS 315
             +++   + L GNPL  RTL++
Sbjct: 442 IHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 46.0 bits (110), Expect = 7e-07
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +L++L LS N++   PD     L +L  L L  N L  +  + F  +P L+ LDLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 76/264 (28%), Positives = 104/264 (39%), Gaps = 56/264 (21%)

Query: 360 KELSLEGMNL-----SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-------LQT 407
           + L LEG  L      A+ S +     + +L LS N    +P  L S          LQ 
Sbjct: 26  QVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85

Query: 408 LILSRNKIKDWPDAILTSL---SSLSCLKLDNNPLRQVP----SDGFKDIPM-LQILDLS 459
           L LS N +      +L SL   SSL  LKL+NN L        + G KD+P  L+ L L 
Sbjct: 86  LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145

Query: 460 YN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-----RLQQLRILDL 505
            N         +A         +   L+EL L    + +A    L         L +LDL
Sbjct: 146 RNRLEGASCEALAKA-----LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDL 200

Query: 506 SQNSL-----QSIPEGFKNLTSLTELDLSDNNI-----SALPPELGLLEPSLQALRLDGN 555
           + N L      ++ E   +L SL  L+L DNN+     +AL   L     SL  L L  N
Sbjct: 201 NNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN 260

Query: 556 PLRSIRRTILDRGTKAVLKYLKDK 579
                   I D G K + + L +K
Sbjct: 261 -------DITDDGAKDLAEVLAEK 277

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.3 bits (103), Expect = 7e-06
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           +  LDLS N +  +P        +L+ L LS N +        + L SL  L L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 245 LPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLR 301
           +P ++ KL  L +++L  N ++         +  L VLDLS NS +G  PE +G++T+LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 302 KLLLTGNPL 310
            L L GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 29/117 (24%)

Query: 429 LSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 487
           +  L LDN  LR  +P+D                          S L HLQ + L    +
Sbjct: 420 IDGLGLDNQGLRGFIPND-------------------------ISKLRHLQSINLSGNSI 454

Query: 488 R-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISA-LPPELG 541
           R   P  +  +  L +LDLS NS   SIPE    LTSL  L+L+ N++S  +P  LG
Sbjct: 455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 4e-05
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
           L+ L L++N +  + +   + LP L VL++S N L+ +   A   L  L+SLD+S N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 7e-05
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 60  LKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALV 117
           +  D+  L  L  +N+S N +   +P ++G +  L+ LD+S+NS    IP+ +G  T+L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 118 KFDCSSNQLK-ELPSSLG-RCLNLSDFKASNN 147
             + + N L   +P++LG R L+ + F  ++N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
             L  LDLS N +  +P    NL +L  LDLS N I+ L P
Sbjct: 1   TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 42.8 bits (100), Expect = 5e-04
 Identities = 84/291 (28%), Positives = 124/291 (42%), Gaps = 33/291 (11%)

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           L+V  + LT L + L A    +T L+   N L  +P     L  L   ++  N++ S+P 
Sbjct: 206 LNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPELRTL---EVSGNQLTSLPV 259

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLS 283
              G   L+ F      L ALP+ L KL   G      NQL    V    L+ LSV D  
Sbjct: 260 LPPGLLELSIFSNPLTHLPALPSGLCKLWIFG------NQLTSLPVLPPGLQELSVSDNQ 313

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL----VNGPTPALLKYLRSRLPENEDS 339
             SL  LP E+ K+      L +   L TL S L    V+    A L  L S L +    
Sbjct: 314 LASLPALPSELCKLWAYNNQLTS---LPTLPSGLQELSVSDNQLASLPTLPSELYK---- 366

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
                  + +T    L    KEL + G  L+++P       E+ +L +S N +  LP   
Sbjct: 367 --LWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLP 421

Query: 400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           S   SL    + RN++   P++ L  LSS + + L+ NPL +      ++I
Sbjct: 422 SGLLSLS---VYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALREI 468

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
           +L  L L NN L  +P   FK +P L++LDLS N + S+     FS LP L+ L L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA-FSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 208 RLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            L  LDL  NR+  IP  +  G  +L    +  N L+++  E    L  L +LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85
          L+ L L++N I  L   L NLP L  L++S NK+++L  
Sbjct: 3  LETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 53/202 (26%), Positives = 78/202 (38%), Gaps = 38/202 (18%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKI-----KDWPDAILTSLSSLSCLKLD 435
               L L    +++LPP L        L+L RN++     +    A L +   L  L L 
Sbjct: 121 GDRGLRLLAKGLKDLPPALEK------LVLGRNRLEGASCEALAKA-LRANRDLKELNLA 173

Query: 436 NNPLR----QVPSDGFKDIPMLQILDLSYN------IASLPENPPFSSLPHLQELYLRRM 485
           NN +     +  ++G K    L++LDL+ N       ++L E    +SL  L+ L L   
Sbjct: 174 NNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET--LASLKSLEVLNLGDN 231

Query: 486 QLREAPT----DILR--LQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS 534
            L +A        L      L  L LS N +     + + E      SL ELDL  N   
Sbjct: 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

Query: 535 ALPPEL---GLLEPSLQALRLD 553
               +L    LLEP  +   L 
Sbjct: 292 EEGAQLLAESLLEPGNELESLW 313

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
           IP++I +   +  ++LS NSI+  +PP L S  SL+ L LS N         L  L+SL 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 431 CLKLDNNPLR-QVPS 444
            L L+ N L  +VP+
Sbjct: 494 ILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +  LDLS N I +LPP LS+  +L+TL LS NKI D  
Sbjct: 3   LETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	583
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.82
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.79
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.61
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.43
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.3
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.27
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.26
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.23
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.11
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.7
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.61
PLN03150	623	hypothetical protein; Provisional	98.6
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.55
KOG4341	483	consensus F-box protein containing LRR [General fu	98.52
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.51
PLN03150	623	hypothetical protein; Provisional	98.51
KOG4341	483	consensus F-box protein containing LRR [General fu	98.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.39
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.26
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.24
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.21
PRK15386	426	type III secretion protein GogB; Provisional	98.18
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.07
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.06
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.02
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.51
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.13
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.07
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.75
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.12
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.67
KOG4308	478	consensus LRR-containing protein [Function unknown	95.46
KOG0473	326	consensus Leucine-rich repeat protein [Function un	95.2
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.13
KOG4308	478	consensus LRR-containing protein [Function unknown	95.08
smart00370	26	LRR Leucine-rich repeats, outliers.	94.43
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.44
smart00370	26	LRR Leucine-rich repeats, outliers.	92.44
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.25
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.97
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.12

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-56  Score=399.20  Aligned_cols=552  Identities=48%  Similarity=0.722  Sum_probs=454.1

Q ss_pred             ChHHHHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCC
Q 007962            1 MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL   80 (583)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l   80 (583)
                      ++++.+.|++.+.+++|++.+.++|..+++=..-..+.+.||+-..+..+++++|.++.+.+.+.++..|.+++++++.+
T Consensus         1 ~~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l   80 (565)
T KOG0472|consen    1 MQRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKL   80 (565)
T ss_pred             CchHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchh
Confidence            46789999999999999999999999998766666789999999999999999999999989999999999999999999


Q ss_pred             cccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCC
Q 007962           81 SELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS  160 (583)
Q Consensus        81 ~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~  160 (583)
                      ..+|++++.+..++.++.++|++..+|+.++.+.+|+++++++|.+..+++.++.+-.++.++..+|++.++|.++..+.
T Consensus        81 ~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~  160 (565)
T KOG0472|consen   81 SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS  160 (565)
T ss_pred             hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCC
Q 007962          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (583)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  240 (583)
                      +|..+++.++.+...++..+. ++.|++++...|.++.+|..++.+.+|..|++..|++..+| .|.+|..|++++++.|
T Consensus       161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N  238 (565)
T KOG0472|consen  161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN  238 (565)
T ss_pred             HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc
Confidence            999999999999999988555 99999999999999999999999999999999999999998 7999999999999999


Q ss_pred             CCccCchhhh-CCCCCCEEEccCCccccccccccccc-ccEEECcCCCCCCCChhhcccCCCcEEecCCCcccccccccc
Q 007962          241 ALSALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (583)
Q Consensus       241 ~~~~l~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  318 (583)
                      .+..+|.... .++.+..||+.+|+++++|.+.+..+ ++++|+++|.++.+|..++++ .|+.+-+.||++.++.....
T Consensus       239 ~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii  317 (565)
T KOG0472|consen  239 QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREII  317 (565)
T ss_pred             HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHH
Confidence            9999988765 89999999999999999999998887 999999999999999999999 99999999999999999999


Q ss_pred             CCCcHHHHHHHHhcCCCCCCcccccchhh------hhhhhhccccccceeecCCCCCccCChhhhccCC---ccEEEcCC
Q 007962          319 NGPTPALLKYLRSRLPENEDSEASTTKED------LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSR  389 (583)
Q Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~  389 (583)
                      .+.....+++++..+..............      ..........+.+.+.+++-..+.+|...|....   .+..+++.
T Consensus       318 ~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnfsk  397 (565)
T KOG0472|consen  318 SKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSK  397 (565)
T ss_pred             cccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEeccc
Confidence            99999999999885544322111000000      0000011112334444444444444444443322   44444444


Q ss_pred             CCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCC
Q 007962          390 NSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP  469 (583)
Q Consensus       390 ~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  469 (583)
                      |++.++|+.+..+..+.+                       .+.+++|.+.-++.. +..+++|+.|++++|.+.+. +.
T Consensus       398 NqL~elPk~L~~lkelvT-----------------------~l~lsnn~isfv~~~-l~~l~kLt~L~L~NN~Ln~L-P~  452 (565)
T KOG0472|consen  398 NQLCELPKRLVELKELVT-----------------------DLVLSNNKISFVPLE-LSQLQKLTFLDLSNNLLNDL-PE  452 (565)
T ss_pred             chHhhhhhhhHHHHHHHH-----------------------HHHhhcCccccchHH-HHhhhcceeeecccchhhhc-ch
Confidence            444444444333333322                       223333333323222 44455555555555544333 23


Q ss_pred             CCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCccccccccc
Q 007962          470 PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQ  548 (583)
Q Consensus       470 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~  548 (583)
                      .++.+..|+.|+++.|++..+|..+.....++.+-.++|++..++. ++.++.+|.+||+.+|.|..+|+.++.. .+|+
T Consensus       453 e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnm-tnL~  531 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNM-TNLR  531 (565)
T ss_pred             hhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccc-ccee
Confidence            3566677888888888888888888888889999999999998754 4999999999999999999999998876 9999


Q ss_pred             eeeccCCCCccchhHHhccchHHHHHHHhhcCC
Q 007962          549 ALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP  581 (583)
Q Consensus       549 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (583)
                      .|+++||+|+-.+.+++.-...+..+|++++||
T Consensus       532 hLeL~gNpfr~Pr~~iLmkgT~aiL~ylrdrIp  564 (565)
T KOG0472|consen  532 HLELDGNPFRQPRHQILMKGTAAILSYLRDRIP  564 (565)
T ss_pred             EEEecCCccCCCHHHHhccChHHHHHHhcccCC
Confidence            999999999988888999999999999999999

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.6e-46  Score=413.30  Aligned_cols=499  Identities=28%  Similarity=0.363  Sum_probs=356.6

Q ss_pred             hhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-hhhHh-hCCCCCCcEEEcCCCCCcc-cchh
Q 007962           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKED-LRNLPLLTVLNVSHNKLSE-LPAA   86 (583)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~l~~~-~~~~~~L~~L~L~~~~l~~-l~~~   86 (583)
                      .+..+|++++++.......            |..+++|++|++++|.+. .+|.. +.++++|++|++++|.+.. +|. 
T Consensus        70 ~v~~L~L~~~~i~~~~~~~------------~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-  136 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSA------------IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-  136 (968)
T ss_pred             cEEEEEecCCCccccCChH------------HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-
Confidence            4555666665554332222            223567777777777765 56543 4477777777777776652 332 


Q ss_pred             hhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCCcCC-cCCcccccCCCCCEEEccccccC-CCCcccccCCCCc
Q 007962           87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMS  163 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~  163 (583)
                       ..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|+
T Consensus       137 -~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        137 -GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             -cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence             34667777777777665 56666777777777777777764 55666777777777777777665 4566677777777


Q ss_pred             EEEecCCcceeechhhhcccccCcEEEcCCCcCC-ccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEEcCCCC
Q 007962          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNA  241 (583)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~  241 (583)
                      +|++++|.+....+..+..+++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.
T Consensus       216 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  295 (968)
T PLN00113        216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS  295 (968)
T ss_pred             EEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe
Confidence            7777777766544445677777777777777664 45666777777777777777665 456666777777777777777


Q ss_pred             Cc-cCchhhhCCCCCCEEEccCCcccccccc-c-ccccccEEECcCCCCCC-CChhhcccCCCcEEecCCCccccccccc
Q 007962          242 LS-ALPAELGKLSKLGTLDLHSNQLKEYCVE-A-CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL  317 (583)
Q Consensus       242 ~~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~-~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~  317 (583)
                      +. .+|..+..+++|+.|++++|.+...... . ...+|+.+++++|.+.+ +|..++.+++|+.+++++|.+.......
T Consensus       296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            66 5566677777777777777766532221 1 22347777777777664 5556677777777777776653221111


Q ss_pred             cCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCCCCCCc-C
Q 007962          318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-L  395 (583)
Q Consensus       318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l  395 (583)
                                                         ......++.+.+.+|.+. .++..+..+++|+.+++++|.++. +
T Consensus       376 -----------------------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~  420 (968)
T PLN00113        376 -----------------------------------LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL  420 (968)
T ss_pred             -----------------------------------HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC
Confidence                                               111246788888888876 567777788899999999998875 6


Q ss_pred             CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCC
Q 007962          396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP  475 (583)
Q Consensus       396 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  475 (583)
                      |..+..+++|+.|++++|.+.+.....+..+++|+.|++++|.+.+..+. ....++|+.|++++|.++...+..+..++
T Consensus       421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  499 (968)
T PLN00113        421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLGSLS  499 (968)
T ss_pred             ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc-ccccccceEEECcCCccCCccChhhhhhh
Confidence            77788899999999999988887776677889999999999988764444 23568899999999999888888888899


Q ss_pred             ccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCCCCCCC-cCCCCccccccccceeec
Q 007962          476 HLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRL  552 (583)
Q Consensus       476 ~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l  552 (583)
                      +|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|+++ .+|..+... ++|+.+++
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~l~l  578 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV-ESLVQVNI  578 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC-cccCEEec
Confidence            9999999999887 67888888999999999999988 56788889999999999999888 556555544 88999999


Q ss_pred             cCCCCcc
Q 007962          553 DGNPLRS  559 (583)
Q Consensus       553 ~~~~~~~  559 (583)
                      ++|++..
T Consensus       579 s~N~l~~  585 (968)
T PLN00113        579 SHNHLHG  585 (968)
T ss_pred             cCCccee
Confidence            9998753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.3e-45  Score=405.83  Aligned_cols=502  Identities=29%  Similarity=0.379  Sum_probs=421.8

Q ss_pred             HHHHHHhhhceeeccCCcCC-CCChhhhhcccccCCCCCcccccCccEEEcCCCcchh-hhHhhCCCCCCcEEEcCCCCC
Q 007962            3 RILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDLRNLPLLTVLNVSHNKL   80 (583)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-l~~~~~~~~~L~~L~L~~~~l   80 (583)
                      ..+...+.+++++++++++. .+|..++..            +++|++|++++|+++. +|.  ..+++|++|++++|.+
T Consensus        87 ~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~------------l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~  152 (968)
T PLN00113         87 SAIFRLPYIQTINLSNNQLSGPIPDDIFTT------------SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML  152 (968)
T ss_pred             hHHhCCCCCCEEECCCCccCCcCChHHhcc------------CCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc
Confidence            34566789999999999997 788877643            7899999999998873 442  5689999999999998


Q ss_pred             c-ccchhhhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCCcCC-cCCcccccCCCCCEEEccccccC-CCCccc
Q 007962           81 S-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDL  156 (583)
Q Consensus        81 ~-~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l  156 (583)
                      . .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+
T Consensus       153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l  232 (968)
T PLN00113        153 SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI  232 (968)
T ss_pred             cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence            7 67889999999999999999876 78888999999999999999987 67888999999999999999887 678889


Q ss_pred             ccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCC-ccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcE
Q 007962          157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAE  234 (583)
Q Consensus       157 ~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~  234 (583)
                      ..+++|++|++++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus       233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  312 (968)
T PLN00113        233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI  312 (968)
T ss_pred             hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence            99999999999999988666666999999999999999885 57788889999999999999887 56778899999999


Q ss_pred             EEcCCCCCc-cCchhhhCCCCCCEEEccCCcccc-cccccc-cccccEEECcCCCCCC-CChhhcccCCCcEEecCCCcc
Q 007962          235 FYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE-YCVEAC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL  310 (583)
Q Consensus       235 L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~~-~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  310 (583)
                      |++++|.+. .+|..+..+++|+.|++++|.+.. ++.... ..+|+.+++++|.+.+ +|..+..+++++.+++++|.+
T Consensus       313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l  392 (968)
T PLN00113        313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL  392 (968)
T ss_pred             EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence            999999888 667889999999999999998874 443322 3459999999998876 777788889999999999876


Q ss_pred             ccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCC
Q 007962          311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR  389 (583)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~  389 (583)
                      .......                                   .....+++.+++.+|.+. .++..+..++.|+.+++++
T Consensus       393 ~~~~p~~-----------------------------------~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        393 EGEIPKS-----------------------------------LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             cccCCHH-----------------------------------HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence            4322111                                   112247889999999887 5677788899999999999


Q ss_pred             CCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCC
Q 007962          390 NSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN  468 (583)
Q Consensus       390 ~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  468 (583)
                      |.+.. ++..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|++.+.....+..+++|+.|++++|.+....+
T Consensus       438 N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  516 (968)
T PLN00113        438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP  516 (968)
T ss_pred             CcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence            99887 55567789999999999998886555543 56899999999999998777778999999999999999998888


Q ss_pred             CCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCCCCCCC-cCCCCcccccc
Q 007962          469 PPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEP  545 (583)
Q Consensus       469 ~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~  545 (583)
                      ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|++. .+|... .. .
T Consensus       517 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~-~~-~  594 (968)
T PLN00113        517 DELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG-AF-L  594 (968)
T ss_pred             hHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcc-hh-c
Confidence            88999999999999999988 67788889999999999999998 78999999999999999999888 455432 11 3


Q ss_pred             ccceeeccCCC
Q 007962          546 SLQALRLDGNP  556 (583)
Q Consensus       546 ~L~~L~l~~~~  556 (583)
                      ++....+.||+
T Consensus       595 ~~~~~~~~~n~  605 (968)
T PLN00113        595 AINASAVAGNI  605 (968)
T ss_pred             ccChhhhcCCc
Confidence            44444455554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3.1e-42  Score=308.50  Aligned_cols=458  Identities=29%  Similarity=0.419  Sum_probs=317.5

Q ss_pred             HHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch
Q 007962            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (583)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~   85 (583)
                      ++...+++++...+++.++|+.+..             ...+..++.++|++..+|+.+..++.|+.++++++.+..+++
T Consensus        65 ~nL~~l~vl~~~~n~l~~lp~aig~-------------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~  131 (565)
T KOG0472|consen   65 KNLACLTVLNVHDNKLSQLPAAIGE-------------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPD  131 (565)
T ss_pred             hcccceeEEEeccchhhhCCHHHHH-------------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCc
Confidence            4445667777777777777776654             466777777777777777777777777777777777777777


Q ss_pred             hhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEE
Q 007962           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL  165 (583)
Q Consensus        86 ~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  165 (583)
                      .++.+..|..++..+|.+..+|.++..+.+|..+++.+|.++.+|+..-.++.|++|++..|.++.+|+.++.+.+|.-|
T Consensus       132 ~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L  211 (565)
T KOG0472|consen  132 SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL  211 (565)
T ss_pred             hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence            77777777777777777777777777777777888888877777766666778888888888777888888888888888


Q ss_pred             EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhc-CCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCcc
Q 007962          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG-SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA  244 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  244 (583)
                      ++..|++..++.  |.+|..|.+++++.|.+..+|+... .++++..|++.+|++..+|..+..+.+|+.+++++|.++.
T Consensus       212 yL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  212 YLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             HhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcccc
Confidence            888888877773  7788888888888888777776654 6777888888888888888877777888888888888888


Q ss_pred             CchhhhCCCCCCEEEccCCcccccccccccc--c--ccEEEC--cCCCCC--------------CCChhhcccCCCcEEe
Q 007962          245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQL--R--LSVLDL--SNNSLS--------------GLPPEIGKMTTLRKLL  304 (583)
Q Consensus       245 l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~--L~~L~l--~~~~~~--------------~~~~~~~~~~~L~~L~  304 (583)
                      +|..++++ .|+.|-+.||.+..+-......  .  ++++.-  .+..++              ...+......+.+.++
T Consensus       290 Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~  368 (565)
T KOG0472|consen  290 LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD  368 (565)
T ss_pred             CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence            88888887 7888888888766433322111  0  232211  000000              0111122334455666


Q ss_pred             cCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCcc-
Q 007962          305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT-  383 (583)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~-  383 (583)
                      +++-+++.++..+|....                                 ..-...++++.|.+.++|..+.....+. 
T Consensus       369 ~s~~qlt~VPdEVfea~~---------------------------------~~~Vt~VnfskNqL~elPk~L~~lkelvT  415 (565)
T KOG0472|consen  369 VSDKQLTLVPDEVFEAAK---------------------------------SEIVTSVNFSKNQLCELPKRLVELKELVT  415 (565)
T ss_pred             ccccccccCCHHHHHHhh---------------------------------hcceEEEecccchHhhhhhhhHHHHHHHH
Confidence            666555555544443211                                 1235778999999999999887765544 


Q ss_pred             EEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCcc
Q 007962          384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA  463 (583)
Q Consensus       384 ~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  463 (583)
                      .+.++++.+..+|..++.+++|..|++++|-+.+.+.+. +.+..|+.++++.|++..++..                  
T Consensus       416 ~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~------------------  476 (565)
T KOG0472|consen  416 DLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRMLPEC------------------  476 (565)
T ss_pred             HHHhhcCccccchHHHHhhhcceeeecccchhhhcchhh-hhhhhhheecccccccccchHH------------------
Confidence            466677777777778888899999999888887777664 6677788888888876655532                  


Q ss_pred             CCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCC
Q 007962          464 SLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  539 (583)
Q Consensus       464 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~  539 (583)
                             +..+..++.+..+++++++++.+ +.++..|.+||+.+|++..+|..++++++|++|+++||.++ .|..
T Consensus       477 -------~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr-~Pr~  545 (565)
T KOG0472|consen  477 -------LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR-QPRH  545 (565)
T ss_pred             -------HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-CCHH
Confidence                   22233444444445555555444 56677777777777777777777777777777777777776 4443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-37  Score=289.81  Aligned_cols=385  Identities=24%  Similarity=0.319  Sum_probs=235.4

Q ss_pred             CccEEEcCCCcchhhh-HhhCCC--CCCcEEEcCCCCCccc-chhhhCCCCccEEEccCCccccCCccccccCcccEEEc
Q 007962           46 DLQKLILAHNNIEKLK-EDLRNL--PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (583)
Q Consensus        46 ~L~~L~ls~~~i~~l~-~~~~~~--~~L~~L~L~~~~l~~l-~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l  121 (583)
                      .-+.||+++..+..+. ..+..+  +.-+.||+++|.+.++ +..|.++++|+.+++..|.++.+|.-.+...+|++|++
T Consensus        53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL  132 (873)
T ss_pred             CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence            3455888988888763 234333  3456699999998877 34788999999999999999999876666777999999


Q ss_pred             CCCcCCcCC-cccccCCCCCEEEccccccCCCCc-ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc
Q 007962          122 SSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (583)
Q Consensus       122 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (583)
                      .+|.+.++. +.+..++.|++|+++.|.+..++. .+..-.++++|++++|.|.++..+.|..+..|..|.++.|+++.+
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence            998888764 467777788888888887776653 355556777777777777777666555555555555555444444


Q ss_pred             chhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccccccccccc
Q 007962          200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS  278 (583)
Q Consensus       200 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~  278 (583)
                      |.                      ..|..+++|+.|++..|.|... .-.|..+++|+.|.+..|++..+.++       
T Consensus       213 p~----------------------r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG-------  263 (873)
T KOG4194|consen  213 PQ----------------------RSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG-------  263 (873)
T ss_pred             CH----------------------HHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc-------
Confidence            32                      1222233333333333333322 22344455555555544444332221       


Q ss_pred             EEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccc
Q 007962          279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT  358 (583)
Q Consensus       279 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (583)
                                    .|..+.+++++++..|.                                                 
T Consensus       264 --------------~Fy~l~kme~l~L~~N~-------------------------------------------------  280 (873)
T KOG4194|consen  264 --------------AFYGLEKMEHLNLETNR-------------------------------------------------  280 (873)
T ss_pred             --------------ceeeecccceeecccch-------------------------------------------------
Confidence                          23344455555555444                                                 


Q ss_pred             cceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCC
Q 007962          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (583)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  437 (583)
                                                       +..+.. ++.++++|+.|+++.|.|..+....+..+++|++|+|+.|
T Consensus       281 ---------------------------------l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  281 ---------------------------------LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN  327 (873)
T ss_pred             ---------------------------------hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc
Confidence                                             333322 3344555555555555555555445555555555555555


Q ss_pred             CCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc----ccchhccCcccEEeCCCCcCCcc
Q 007962          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA----PTDILRLQQLRILDLSQNSLQSI  513 (583)
Q Consensus       438 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~~~~~~~L~~L~l~~n~l~~l  513 (583)
                      +++.++..+|..+..|+.|.++.|.++.+...+|..+.+|++|+|++|.++..    ...+.++++|++|++.||+++++
T Consensus       328 ~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I  407 (873)
T KOG4194|consen  328 RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI  407 (873)
T ss_pred             ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence            55555555555555555555555555555555555556666666666655522    12234577777777777777777


Q ss_pred             ch-hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCC
Q 007962          514 PE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP  556 (583)
Q Consensus       514 ~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~  556 (583)
                      |. +|..++.|++|++.+|.|.++.++.|.- ..|++|.+..-.
T Consensus       408 ~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~-m~Lk~Lv~nSss  450 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDNAIASIQPNAFEP-MELKELVMNSSS  450 (873)
T ss_pred             chhhhccCcccceecCCCCcceeeccccccc-chhhhhhhcccc
Confidence            63 4777788888888888888877777765 477777665433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=5.2e-39  Score=316.91  Aligned_cols=491  Identities=29%  Similarity=0.337  Sum_probs=401.5

Q ss_pred             eeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhCCC
Q 007962           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH   91 (583)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~   91 (583)
                      .+|.|..+++=||..++..             ..+..|+++.|-+-..| +..+++.+|+.||+++|.+...|..+..++
T Consensus         2 ~vd~s~~~l~~ip~~i~~~-------------~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~   68 (1081)
T KOG0618|consen    2 HVDASDEQLELIPEQILNN-------------EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLS   68 (1081)
T ss_pred             CcccccccCcccchhhccH-------------HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHH
Confidence            4788888999999988753             34888899888777765 456677779999999999999999999999


Q ss_pred             CccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC-
Q 007962           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-  170 (583)
Q Consensus        92 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~-  170 (583)
                      +|+.|+++.|.+...|.+..++.+|+++++.+|.+..+|..+..+.+|++|+++.|.+..+|..+..++.+..+..++| 
T Consensus        69 ~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   69 HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcch
Confidence            9999999999999999889999999999999999999999999999999999999999999999999999999999988 


Q ss_pred             cceeechhhhcccccCcEEEcCCCcCC-ccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhh
Q 007962          171 KLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (583)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l  249 (583)
                      .+..+     +.. .++.+++..+.+. .++..+..+..  .+++.+|.+..  ..+..+.+|+.+....+.+..+..  
T Consensus       149 ~~~~l-----g~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls~l~~--  216 (1081)
T KOG0618|consen  149 KIQRL-----GQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--LDLSNLANLEVLHCERNQLSELEI--  216 (1081)
T ss_pred             hhhhh-----ccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--hhhhhccchhhhhhhhcccceEEe--
Confidence            22222     222 2777788877763 44444444444  59999998772  356778889999988888774422  


Q ss_pred             hCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHH
Q 007962          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (583)
Q Consensus       250 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l  329 (583)
                       .-++++.|+.++|.+........+.++++++++++.+..+|.+++.+.+++.++...|.+..++...+.          
T Consensus       217 -~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~----------  285 (1081)
T KOG0618|consen  217 -SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISR----------  285 (1081)
T ss_pred             -cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhh----------
Confidence             347899999999999877666677789999999999999999999999999999999988555433222          


Q ss_pred             HhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccc-cCC-CCCcE
Q 007962          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSC-ASLQT  407 (583)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l-~~~-~~L~~  407 (583)
                                                ...++.+....|.+..++.......+|++|++..|++.++|+.+ .-. .+|+.
T Consensus       286 --------------------------~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~  339 (1081)
T KOG0618|consen  286 --------------------------ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNT  339 (1081)
T ss_pred             --------------------------hhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHH
Confidence                                      13566677778888888888888899999999999999988732 222 23677


Q ss_pred             EEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccc
Q 007962          408 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL  487 (583)
Q Consensus       408 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  487 (583)
                      +..+.+.+...+...=...+.|+.|.+.+|.+++--...+.++++|+.|++++|.+..+....+.+++.|++|+|+||++
T Consensus       340 ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL  419 (1081)
T KOG0618|consen  340 LNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL  419 (1081)
T ss_pred             HhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh
Confidence            77777777665532224567899999999999986666689999999999999999988888899999999999999999


Q ss_pred             cccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCc--CCCCccccccccceeeccCCCCccchhHHh
Q 007962          488 REAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA--LPPELGLLEPSLQALRLDGNPLRSIRRTIL  565 (583)
Q Consensus       488 ~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  565 (583)
                      +.+|..+..++.|++|...+|.+..+| .+..++.|+.+|++.|+|+.  ++...-.  ++|+.||++||.-..++.+.|
T Consensus       420 ~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~~l~~d~~~l  496 (1081)
T KOG0618|consen  420 TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNTRLVFDHKTL  496 (1081)
T ss_pred             hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC--cccceeeccCCcccccchhhh
Confidence            999999999999999999999999999 57889999999999999983  3333221  899999999999777777766


Q ss_pred             ccc
Q 007962          566 DRG  568 (583)
Q Consensus       566 ~~~  568 (583)
                      ...
T Consensus       497 ~~l  499 (1081)
T KOG0618|consen  497 KVL  499 (1081)
T ss_pred             HHh
Confidence            543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-36  Score=282.46  Aligned_cols=381  Identities=25%  Similarity=0.351  Sum_probs=293.4

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhC
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGE   89 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~   89 (583)
                      -..+||+.+++..+.....+.+.          .+..+.||+++|++..+. ..|.++++|+.+++.+|.++.||.....
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~l----------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~  123 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFL----------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHE  123 (873)
T ss_pred             ceeeecCccccccccccccCCcC----------ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccccc
Confidence            45688888888876333322221          246788999999999884 5789999999999999999999988888


Q ss_pred             CCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCCCC-cccccCCCCcEEE
Q 007962           90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD  166 (583)
Q Consensus        90 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~  166 (583)
                      ..+|+.|+|.+|.++.+. +.+..++.|+.||++.|.++.++. .+..-.++++|++++|.|+.+. ..|..+.+|..|.
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence            889999999999998654 458889999999999999998874 6777789999999999999775 4588899999999


Q ss_pred             ecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCcccC-CCCcCCCCCcEEEcCCCCCcc
Q 007962          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA  244 (583)
Q Consensus       167 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~  244 (583)
                      +++|.++.++...|.++++|+.|++..|.+..+ -..|..+++|+.|.+..|.+..+. ..|..+.++++|++..|.+..
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            999999999999999999999999999999765 346788999999999999998774 457889999999999999986


Q ss_pred             Cc-hhhhCCCCCCEEEccCCcccc--cccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCC
Q 007962          245 LP-AELGKLSKLGTLDLHSNQLKE--YCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNG  320 (583)
Q Consensus       245 l~-~~l~~~~~L~~L~l~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~  320 (583)
                      +. .++.+++.|++|+++.|.+..  ...+.+..+|+.|+++.|++..+++. +..+..|++|+++.|.++.+...+|. 
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~-  362 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV-  362 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH-
Confidence            64 478889999999999998774  34455555677777777766665543 55566666666666655444333222 


Q ss_pred             CcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc----CC
Q 007962          321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE----LP  396 (583)
Q Consensus       321 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----l~  396 (583)
                                                                               ..++|++|+++.|.+..    -.
T Consensus       363 ---------------------------------------------------------~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  363 ---------------------------------------------------------GLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             ---------------------------------------------------------HhhhhhhhcCcCCeEEEEEecch
Confidence                                                                     24566677777665543    23


Q ss_pred             ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCC
Q 007962          397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (583)
Q Consensus       397 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  460 (583)
                      ..+.++++|++|++.||++..+....|.+++.|++|+|.+|.+-.+...+|..+ .|++|.+..
T Consensus       386 ~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  386 VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            345667777777777777777777777777777777777777777766667666 666666643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-35  Score=291.90  Aligned_cols=441  Identities=27%  Similarity=0.370  Sum_probs=287.2

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~   90 (583)
                      +..++++.|-+.+-|.....+            +.+|+.||+++|.+..+|..+..+++|+.|+++.|.+..+|.+..++
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~   90 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM   90 (1081)
T ss_pred             HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence            556666666666666444332            33466666666666666666666666666666666666666666666


Q ss_pred             CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccc-------------------ccC-
Q 007962           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-------------------CIT-  150 (583)
Q Consensus        91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-------------------~~~-  150 (583)
                      .+|+++.|..|.+..+|.++..+.+|+.|++++|.+..+|..+..+..+..+..++|                   .+. 
T Consensus        91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG  170 (1081)
T ss_pred             hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence            666666666666666666666666666666666666666655555555555555555                   222 


Q ss_pred             CCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCC
Q 007962          151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC  230 (583)
Q Consensus       151 ~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (583)
                      .++.++..+++  .|++.+|.+....   +..+.+|+.+....+.+..+..   .-++|+.|+.+.|.+... .......
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~ls~l~~---~g~~l~~L~a~~n~l~~~-~~~p~p~  241 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQLSELEI---SGPSLTALYADHNPLTTL-DVHPVPL  241 (1081)
T ss_pred             chhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcccceEEe---cCcchheeeeccCcceee-ccccccc
Confidence            22223333333  4666666655222   5555666666666665544321   235677777777766633 2233456


Q ss_pred             CCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccccccccccccc-ccEEECcCCCCCCCChhhcccCCCcEEecCCCc
Q 007962          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (583)
Q Consensus       231 ~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  309 (583)
                      +|+.++++.+.++.+|.++..+.+|+.++...|.+..++...+... |+++.+..|.+..+|+..+..++|++|++..|.
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            7888888888888888888888888888888888877766555443 888888888888888888888888888888887


Q ss_pred             cccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCC
Q 007962          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR  389 (583)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~  389 (583)
                      +...+...+...                                                         ..+++.+..+.
T Consensus       322 L~~lp~~~l~v~---------------------------------------------------------~~~l~~ln~s~  344 (1081)
T KOG0618|consen  322 LPSLPDNFLAVL---------------------------------------------------------NASLNTLNVSS  344 (1081)
T ss_pred             ccccchHHHhhh---------------------------------------------------------hHHHHHHhhhh
Confidence            755543211110                                                         01234444444


Q ss_pred             CCCCcCCcc-ccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCC
Q 007962          390 NSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN  468 (583)
Q Consensus       390 ~~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  468 (583)
                      +.+...|.. =..++.|+.|.+.+|.+++.....+.+.++|+.|+|++|++..+++..+.+++.|+.|++|+|.++.+. 
T Consensus       345 n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-  423 (1081)
T KOG0618|consen  345 NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-  423 (1081)
T ss_pred             ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-
Confidence            444444421 123456777777777777766666677777777777777777777777777777777777777776554 


Q ss_pred             CCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCC--ccchhhcCCCCCCEEeCCCCC
Q 007962          469 PPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNN  532 (583)
Q Consensus       469 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~~  532 (583)
                      .....++.|++|...+|++..+| .+..+++|+.+|++.|+++  .+|+.... ++|++||++||.
T Consensus       424 ~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  424 DTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             HHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            45667788888888888888887 6777888888888888887  34544443 788888888883

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=3.8e-33  Score=264.11  Aligned_cols=379  Identities=28%  Similarity=0.416  Sum_probs=311.3

Q ss_pred             hhhceeeccCCcCC--CCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchh
Q 007962            9 RTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~   86 (583)
                      +.++-+|.|+|.+.  .+|..+-+             ++.++-|.|..+++..+|+.++.+.+|+.|.+++|++.++-..
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE   73 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE   73 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh
Confidence            45677899999776  78887754             7899999999999999999999999999999999999988888


Q ss_pred             hhCCCCccEEEccCCccc--cCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcc-cccCCCCc
Q 007962           87 IGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMS  163 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~  163 (583)
                      ++.++.|+.+.+.+|++.  .+|..+..+..|..|++++|++..+|..+..-+++-+|++++|+|..||.. +.+++.|-
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLL  153 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLL  153 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHh
Confidence            999999999999999886  799999999999999999999999999999999999999999999999865 78899999


Q ss_pred             EEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEcCCC
Q 007962          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNN  240 (583)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~  240 (583)
                      +|+++.|.+..+++. ...+..|+.|.+++|.+..+. ..+..+++|+.|.+++.+-+  .+|..+..+.+|..++++.|
T Consensus       154 fLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  154 FLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             hhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            999999999999998 899999999999999875331 23445788999999998655  88999999999999999999


Q ss_pred             CCccCchhhhCCCCCCEEEccCCccccccccccc-ccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccC
Q 007962          241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN  319 (583)
Q Consensus       241 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  319 (583)
                      .+..+|+.+.++++|+.|++++|.++.+...... .++++|+++.|+++.+|..+..++.|+.|.+.+|.+.        
T Consensus       233 ~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~--------  304 (1255)
T KOG0444|consen  233 NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLT--------  304 (1255)
T ss_pred             CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccc--------
Confidence            9999999999999999999999999976554332 3589999999999999999999999999998888652        


Q ss_pred             CCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccc
Q 007962          320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL  399 (583)
Q Consensus       320 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l  399 (583)
                                                                       +..+|+.++.+..|+++...+|.+.-+|..+
T Consensus       305 -------------------------------------------------FeGiPSGIGKL~~Levf~aanN~LElVPEgl  335 (1255)
T KOG0444|consen  305 -------------------------------------------------FEGIPSGIGKLIQLEVFHAANNKLELVPEGL  335 (1255)
T ss_pred             -------------------------------------------------ccCCccchhhhhhhHHHHhhccccccCchhh
Confidence                                                             3346666666666777777777776677777


Q ss_pred             cCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCC
Q 007962          400 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (583)
Q Consensus       400 ~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  459 (583)
                      +.|.+|+.|.++.|++...+... .-++.|+.|++..|+-..+++..-..-++|+.-++.
T Consensus       336 cRC~kL~kL~L~~NrLiTLPeaI-HlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  336 CRCVKLQKLKLDHNRLITLPEAI-HLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             hhhHHHHHhcccccceeechhhh-hhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            77777777777777666655443 556777777777666554443322222344444443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.2e-33  Score=263.79  Aligned_cols=364  Identities=24%  Similarity=0.346  Sum_probs=270.1

Q ss_pred             cCccEEEcCCCcch--hhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962           45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (583)
Q Consensus        45 ~~L~~L~ls~~~i~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~  122 (583)
                      +-++-.|+++|.++  .+|.....++.++.|.|...++..+|+.++.+.+|++|++.+|.+..+...+..++.|+.+.+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR   86 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence            34677889999887  6788888899999999999999999999999999999999999988887788889999999999


Q ss_pred             CCcCC--cCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc
Q 007962          123 SNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (583)
Q Consensus       123 ~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (583)
                      .|+++  .+|..+.++..|..|+++.|++.+.|..+...+++-.|++++|+|.+|+...|.++.-|-.|+++.|.+..+|
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LP  166 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLP  166 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcC
Confidence            99876  7788888999999999999999999999999999999999999999888877777766666777776666666


Q ss_pred             hhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEE
Q 007962          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL  280 (583)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L  280 (583)
                      ..+..+..|+.|.+++|.+.-+.                      ...+..++.|+.|.+++.+-+              
T Consensus       167 PQ~RRL~~LqtL~Ls~NPL~hfQ----------------------LrQLPsmtsL~vLhms~TqRT--------------  210 (1255)
T KOG0444|consen  167 PQIRRLSMLQTLKLSNNPLNHFQ----------------------LRQLPSMTSLSVLHMSNTQRT--------------  210 (1255)
T ss_pred             HHHHHHhhhhhhhcCCChhhHHH----------------------HhcCccchhhhhhhcccccch--------------
Confidence            66555556666666655433110                      011112233333333332211              


Q ss_pred             ECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccc
Q 007962          281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK  360 (583)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  360 (583)
                            +.                                                                        
T Consensus       211 ------l~------------------------------------------------------------------------  212 (1255)
T KOG0444|consen  211 ------LD------------------------------------------------------------------------  212 (1255)
T ss_pred             ------hh------------------------------------------------------------------------
Confidence                  11                                                                        


Q ss_pred             eeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCc
Q 007962          361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (583)
Q Consensus       361 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  440 (583)
                                .+|.++..+.+|..++++.|++..+|.++..+++|+.|++++|+++...... +...+|+.|+++.|+++
T Consensus       213 ----------N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~-~~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  213 ----------NIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE-GEWENLETLNLSRNQLT  281 (1255)
T ss_pred             ----------cCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH-HHHhhhhhhccccchhc
Confidence                      2333333445566666666666667777777777777777777777654432 55667777777777777


Q ss_pred             cCCCCccCCCCcccEEeCCCCccCC-CCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcC
Q 007962          441 QVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKN  519 (583)
Q Consensus       441 ~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~  519 (583)
                      .++.. +.++++|+.|.+.+|+++- -.++.++.+.+|+.+...+|.+.-+|+++..|+.|+.|.++.|.+..+|+++.-
T Consensus       282 ~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHl  360 (1255)
T KOG0444|consen  282 VLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHL  360 (1255)
T ss_pred             cchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhh
Confidence            77654 6777777777777777653 335567788888888888888888888888888888888888888888888888


Q ss_pred             CCCCCEEeCCCC-CCC
Q 007962          520 LTSLTELDLSDN-NIS  534 (583)
Q Consensus       520 ~~~L~~L~l~~~-~l~  534 (583)
                      ++.|+.||++.| .+-
T Consensus       361 L~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  361 LPDLKVLDLRENPNLV  376 (1255)
T ss_pred             cCCcceeeccCCcCcc
Confidence            888999998888 443

>PLN03210 Resistant to P

Probab=99.91  E-value=3.3e-22  Score=221.48  Aligned_cols=336  Identities=23%  Similarity=0.272  Sum_probs=184.5

Q ss_pred             eechhhhcccccCcEEEcCCCcC-------CccchhhcCC-ccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC
Q 007962          174 VLSNNLIASWTMLTELIASKNLL-------NGMPETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (583)
Q Consensus       174 ~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l  245 (583)
                      .+...+|.++++|+.|.+..+..       ..+|..+..+ .+|+.|.+.++.+..+|..+ ...+|++|++.++.+..+
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence            34555577777777776654422       1234444443 35777777777777777666 356777777777777777


Q ss_pred             chhhhCCCCCCEEEccCC-cccccccccccccccEEECcCCC-CCCCChhhcccCCCcEEecCCCc-cccccccccCCCc
Q 007962          246 PAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPT  322 (583)
Q Consensus       246 ~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~  322 (583)
                      +..+..+++|+.++++++ .+..++......+|++|++++|. +..+|..+.++++|+.|++++|. +..++...     
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-----  701 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-----  701 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-----
Confidence            766777777777777765 34555554455567777777763 44566667777777777777763 22222110     


Q ss_pred             HHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCCCCCCcCCccccC
Q 007962          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQELPPELSS  401 (583)
Q Consensus       323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~  401 (583)
                                                      ...+|+.+.+++|... .++.   ...+|++|+++++.+..+|..+ .
T Consensus       702 --------------------------------~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~  745 (1153)
T PLN03210        702 --------------------------------NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-R  745 (1153)
T ss_pred             --------------------------------CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-c
Confidence                                            0124555555555322 2221   1245666666666665555433 3


Q ss_pred             CCCCcEEEccCCCCC-------CCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCC
Q 007962          402 CASLQTLILSRNKIK-------DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL  474 (583)
Q Consensus       402 ~~~L~~L~l~~~~l~-------~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  474 (583)
                      +++|++|.+.++...       ......+...++|+.|++++|+.....+..+.++++|+.|++++|......+... .+
T Consensus       746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L  824 (1153)
T PLN03210        746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL  824 (1153)
T ss_pred             ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence            455555555543211       1111112234556666666654332222235566666666666553222222222 45


Q ss_pred             CccceEecccc-cccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCC-CCCcCCCCccccccccceeec
Q 007962          475 PHLQELYLRRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN-NISALPPELGLLEPSLQALRL  552 (583)
Q Consensus       475 ~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~L~~L~l  552 (583)
                      ++|+.|++++| .+..+|..   .++|+.|++++|.++.+|..+..+++|++|++++| +++.++.....+ ++|+.+++
T Consensus       825 ~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l  900 (1153)
T PLN03210        825 ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDF  900 (1153)
T ss_pred             cccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeec
Confidence            66666666665 34444331   24566666666666666666666666666666665 555555554443 56666666


Q ss_pred             cCCC
Q 007962          553 DGNP  556 (583)
Q Consensus       553 ~~~~  556 (583)
                      ++|+
T Consensus       901 ~~C~  904 (1153)
T PLN03210        901 SDCG  904 (1153)
T ss_pred             CCCc
Confidence            6663

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.90  E-value=7.6e-22  Score=218.62  Aligned_cols=335  Identities=22%  Similarity=0.263  Sum_probs=199.0

Q ss_pred             ccccCCCCCEEEccccccC-------CCCcccccC-CCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          132 SLGRCLNLSDFKASNNCIT-------SLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       132 ~~~~~~~L~~L~l~~~~~~-------~l~~~l~~l-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      +|.++++|+.|.++.+...       .+|..+..+ .+|+.|.+.++.+..++.. + ...+|+.|++.++.+..++..+
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~~~~  630 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLWDGV  630 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCcccccccccc
Confidence            4555666666665443211       234444443 3466666666665555543 2 3456666666666666555555


Q ss_pred             cCCccccEEEccCCc-CcccCCCCcCCCCCcEEEcCCCC-CccCchhhhCCCCCCEEEccCC-cccccccccccccccEE
Q 007962          204 GSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVL  280 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~~L  280 (583)
                      ..+++|+.++++++. +..+| .+..+++|+.|++.+|. +..+|..++.+++|+.|++++| .+..++...        
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--------  701 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--------  701 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--------
Confidence            566666666666543 33443 35556666666666653 3355666666666666666654 333333322        


Q ss_pred             ECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccc
Q 007962          281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK  360 (583)
Q Consensus       281 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  360 (583)
                                     ++++|+.|++++|.....                                      ......+++
T Consensus       702 ---------------~l~sL~~L~Lsgc~~L~~--------------------------------------~p~~~~nL~  728 (1153)
T PLN03210        702 ---------------NLKSLYRLNLSGCSRLKS--------------------------------------FPDISTNIS  728 (1153)
T ss_pred             ---------------CCCCCCEEeCCCCCCccc--------------------------------------cccccCCcC
Confidence                           344444444444421000                                      000012344


Q ss_pred             eeecCCCCCccCChhhhccCCccEEEcCCCCCCcCC--------ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEE
Q 007962          361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--------PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL  432 (583)
Q Consensus       361 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--------~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L  432 (583)
                      .++++++.+..+|..+ .+++|++|.+.++....++        .....+++|+.|++++|......+..++++++|+.|
T Consensus       729 ~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L  807 (1153)
T PLN03210        729 WLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL  807 (1153)
T ss_pred             eeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence            4555555555454433 3556666666654322211        112234678888888886555445557888888888


Q ss_pred             ecCCCC-CccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCC-cC
Q 007962          433 KLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN-SL  510 (583)
Q Consensus       433 ~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n-~l  510 (583)
                      ++++|. +..++.. . .+++|+.|++++|......+   ...++|+.|++++|.++.+|..+..+++|+.|++++| .+
T Consensus       808 ~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L  882 (1153)
T PLN03210        808 EIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP---DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL  882 (1153)
T ss_pred             ECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc---ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence            888874 4445543 2 67888999998875432211   2246788999999999988888888999999999986 57


Q ss_pred             CccchhhcCCCCCCEEeCCCC-CCCcC
Q 007962          511 QSIPEGFKNLTSLTELDLSDN-NISAL  536 (583)
Q Consensus       511 ~~l~~~l~~~~~L~~L~l~~~-~l~~~  536 (583)
                      +.+|..+..+++|+.+++++| .++.+
T Consensus       883 ~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        883 QRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             CccCcccccccCCCeeecCCCcccccc
Confidence            778777788889999999998 66543

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=2e-25  Score=200.68  Aligned_cols=258  Identities=24%  Similarity=0.312  Sum_probs=182.6

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~~   89 (583)
                      ..+||++.++++||+.++               ..-+.++|..|.|+.||+ .|+.+++|++|||++|+|+.| |++|.+
T Consensus        49 ~~VdCr~~GL~eVP~~LP---------------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G  113 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLP---------------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG  113 (498)
T ss_pred             ceEEccCCCcccCcccCC---------------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh
Confidence            679999999999999996               468889999999999985 799999999999999999988 669999


Q ss_pred             CCCccEEEccC-CccccCCcc-ccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCCCc-ccccCCCCcEE
Q 007962           90 LHMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (583)
Q Consensus        90 ~~~L~~L~L~~-~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L  165 (583)
                      ++.|..|-+-+ |+|+.+|.. |+++..|+.|.+.-|.+.-++ +.+..++++..|.+++|.+..++. .+..+..++.+
T Consensus       114 L~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  114 LASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             hHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchH
Confidence            99999888877 899999865 889999999999999888554 578899999999999999998876 68888888888


Q ss_pred             EecCCcceee------------chhhhcccccCcEEEcCCCcC--------------------------Cccc-hhhcCC
Q 007962          166 DVEGNKLTVL------------SNNLIASWTMLTELIASKNLL--------------------------NGMP-ETIGSL  206 (583)
Q Consensus       166 ~l~~~~i~~~------------~~~~~~~~~~L~~L~l~~~~~--------------------------~~~~-~~l~~~  206 (583)
                      .+..+.+...            ....+++.....-..+...++                          ...| ..|..+
T Consensus       194 hlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L  273 (498)
T KOG4237|consen  194 HLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL  273 (498)
T ss_pred             hhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhc
Confidence            8776652210            000111111111111111111                          1111 235566


Q ss_pred             ccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCCccCc-hhhhCCCCCCEEEccCCcccccccccccc--cccEEEC
Q 007962          207 SRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDL  282 (583)
Q Consensus       207 ~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~L~~L~l  282 (583)
                      ++|++|++++|.++.+ +.+|.....+++|.+..|++..+. ..|.++..|+.|++++|+++.+....+..  +|.++.+
T Consensus       274 ~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  274 PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence            6677777777766655 345666666777777776666442 34566666777777777666555444432  2444444


Q ss_pred             cC
Q 007962          283 SN  284 (583)
Q Consensus       283 ~~  284 (583)
                      -.
T Consensus       354 ~~  355 (498)
T KOG4237|consen  354 LS  355 (498)
T ss_pred             cc
Confidence            33

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=1e-21  Score=201.42  Aligned_cols=256  Identities=30%  Similarity=0.373  Sum_probs=217.2

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~   90 (583)
                      -..+||++++++++|..++               .+|+.|++++|+++.+|..   .++|++|++++|+++.+|..   .
T Consensus       203 ~~~LdLs~~~LtsLP~~l~---------------~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p  261 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---P  261 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh---------------cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---c
Confidence            4579999999999999774               3799999999999999853   58999999999999988753   4


Q ss_pred             CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC
Q 007962           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (583)
Q Consensus        91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~  170 (583)
                      ++|+.|++++|.++.+|...   ++|+.|++++|+++.+|..   .++|++|++++|.+..+|..   ..+|+.|++++|
T Consensus       262 ~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N  332 (788)
T PRK15387        262 PGLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN  332 (788)
T ss_pred             cccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccC
Confidence            68999999999998877633   5788999999999988863   47899999999999988753   346888999999


Q ss_pred             cceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhh
Q 007962          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG  250 (583)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~  250 (583)
                      .+..++..    ..+|+.|++++|.+..+|..   ..+|+.|++++|.+..+|..   ..+|+.|++++|.+..+|..  
T Consensus       333 ~L~~LP~l----p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l--  400 (788)
T PRK15387        333 QLTSLPTL----PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL--  400 (788)
T ss_pred             cccccccc----ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--
Confidence            99877641    25799999999999988753   36788999999999988754   35799999999999988764  


Q ss_pred             CCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccc
Q 007962          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR  311 (583)
Q Consensus       251 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  311 (583)
                       .++|+.|++++|.++.++..  ..+|+.|++++|.+..+|..+.++++++.+++++|++.
T Consensus       401 -~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        401 -PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             -ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence             36899999999999988753  34689999999999999999999999999999999875

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.5e-20  Score=192.84  Aligned_cols=212  Identities=31%  Similarity=0.362  Sum_probs=104.4

Q ss_pred             CcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccccc
Q 007962           70 LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI  149 (583)
Q Consensus        70 L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  149 (583)
                      -..|+++++.++.+|..+.  ++|+.|++.+|.++.+|..   .++|++|++++|+++.+|..   .++|++|++++|.+
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L  274 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL  274 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence            4455666666555555443  2556666666655555532   34556666666655555432   24555555555555


Q ss_pred             CCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCC
Q 007962          150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC  229 (583)
Q Consensus       150 ~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  229 (583)
                      ..++..   .++|+.|++++|++..++.    ..++|+.|++++|.+..+|..   ..+|+.|++++|.+..+|..   .
T Consensus       275 ~~Lp~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p  341 (788)
T PRK15387        275 THLPAL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---P  341 (788)
T ss_pred             hhhhhc---hhhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---cccccccccccCcccccccc---c
Confidence            544432   1345555555555554432    124455555555555554431   13455555555555554431   1


Q ss_pred             CCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCc
Q 007962          230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (583)
Q Consensus       230 ~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  309 (583)
                      .+|+.|++++|.++.+|..   .++|+.|++++|.+..++..  ..+|+.|++++|.+..+|..   .++|+.|++++|.
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~  413 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR  413 (788)
T ss_pred             cccceEecCCCccCCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCc---ccCCCEEEccCCc
Confidence            3455555555555555432   23455555555555544321  12344555555544444332   1344445555544


Q ss_pred             c
Q 007962          310 L  310 (583)
Q Consensus       310 ~  310 (583)
                      +
T Consensus       414 L  414 (788)
T PRK15387        414 L  414 (788)
T ss_pred             C
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=2.2e-20  Score=193.03  Aligned_cols=245  Identities=26%  Similarity=0.433  Sum_probs=134.2

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~   90 (583)
                      ...+++++.+++++|..++               ++++.|++++|+++.+|..+.  ++|+.|++++|.++.+|..+.  
T Consensus       180 ~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--  240 (754)
T PRK15370        180 KTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--  240 (754)
T ss_pred             ceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--
Confidence            4556666666666665442               246666666666666654432  356666666666666555432  


Q ss_pred             CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC
Q 007962           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (583)
Q Consensus        91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~  170 (583)
                      ++|+.|++++|.+..+|..+.  .+|+.|++++|++..+|..+.  ++|++|++++|.+..+|..+.  ++|++      
T Consensus       241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~------  308 (754)
T PRK15370        241 DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITH------  308 (754)
T ss_pred             ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHH------
Confidence            356666666666655555443  356666666666555554332  355555555555554443322  23444      


Q ss_pred             cceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhh
Q 007962          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG  250 (583)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~  250 (583)
                                        |++++|.+..+|..+.  ++|+.|++++|.+..+|..+  +++|+.|++++|.+..+|..+.
T Consensus       309 ------------------L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp  366 (754)
T PRK15370        309 ------------------LNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP  366 (754)
T ss_pred             ------------------HHhcCCccccCCcccc--ccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc
Confidence                              4444444444443221  35555555555555554433  2456666666666555554432


Q ss_pred             CCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhc----ccCCCcEEecCCCccc
Q 007962          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG----KMTTLRKLLLTGNPLR  311 (583)
Q Consensus       251 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~  311 (583)
                        ++|++|++++|.++.++... ...|+.|++++|.+..+|..+.    .++.+..+++.+|++.
T Consensus       367 --~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        367 --PTITTLDVSRNALTNLPENL-PAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             --CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence              46666666666666555432 2346666666666666554433    3466777888777763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.82  E-value=1.2e-21  Score=176.59  Aligned_cols=188  Identities=27%  Similarity=0.371  Sum_probs=135.3

Q ss_pred             hhccCCccEEEcCCCCCCcCC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCccc
Q 007962          376 IWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (583)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  454 (583)
                      +..+++|+++++++|.++.+. .+|.+...++.|.+.+|++..+...+|.++..|+.|+|.+|+|+.+.+.+|....+|.
T Consensus       270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            455788999999999888865 4688888899999999998888888889999999999999999988888888888999


Q ss_pred             EEeCCCCccC----------------CCCCCCCCCCCccceEeccccccccc----ccc---------hhccCcccEE-e
Q 007962          455 ILDLSYNIAS----------------LPENPPFSSLPHLQELYLRRMQLREA----PTD---------ILRLQQLRIL-D  504 (583)
Q Consensus       455 ~L~l~~~~~~----------------~~~~~~~~~l~~L~~L~l~~~~l~~~----~~~---------~~~~~~L~~L-~  504 (583)
                      .|++-.|.+.                ..+.........++.+.+++..+...    |+.         -..++.+.++ .
T Consensus       350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR  429 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR  429 (498)
T ss_pred             eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence            9888765332                11112233344577777777655422    111         1134445443 3


Q ss_pred             CCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhccch
Q 007962          505 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGT  569 (583)
Q Consensus       505 l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  569 (583)
                      .++..++.+|.++.  ..-.+|++.||.++.+|.+.   ..+| .+++++|+++.+....|.+..
T Consensus       430 cSnk~lk~lp~~iP--~d~telyl~gn~~~~vp~~~---~~~l-~~dls~n~i~~Lsn~tf~n~t  488 (498)
T KOG4237|consen  430 CSNKLLKLLPRGIP--VDVTELYLDGNAITSVPDEL---LRSL-LLDLSNNRISSLSNYTFSNMT  488 (498)
T ss_pred             hcccchhhcCCCCC--chhHHHhcccchhcccCHHH---Hhhh-hcccccCceehhhcccccchh
Confidence            44445667776653  45678899999999999872   2678 999999999988888776543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.79  E-value=3.8e-19  Score=183.95  Aligned_cols=226  Identities=24%  Similarity=0.404  Sum_probs=190.3

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~   88 (583)
                      ..++.+++++|+++.+|..++               .+|++|++++|+++.+|..+.  ++|+.|+|++|.+..+|..+.
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~---------------~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ---------------GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP  261 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc---------------cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh
Confidence            468899999999999998764               479999999999999987664  479999999999999988764


Q ss_pred             CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  168 (583)
                        .+|+.|++++|.++.+|..+.  ++|++|++++|+++.+|..+.  ++|+.|++++|.+..+|..+.  ++|+.|+++
T Consensus       262 --s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls  333 (754)
T PRK15370        262 --SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAG  333 (754)
T ss_pred             --CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCcccc--ccceecccc
Confidence              589999999999998887664  589999999999998886543  579999999999998876543  789999999


Q ss_pred             CCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchh
Q 007962          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (583)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~  248 (583)
                      +|.+..++.. +  .+.|+.|++++|.+..+|..+.  ++|+.|++++|.+..+|..+.  ..|+.|++++|.+..+|..
T Consensus       334 ~N~Lt~LP~~-l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~s  406 (754)
T PRK15370        334 ENALTSLPAS-L--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPES  406 (754)
T ss_pred             CCccccCChh-h--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchh
Confidence            9999887754 2  3689999999999988887653  689999999999998887654  4689999999999987765


Q ss_pred             hh----CCCCCCEEEccCCccc
Q 007962          249 LG----KLSKLGTLDLHSNQLK  266 (583)
Q Consensus       249 l~----~~~~L~~L~l~~~~l~  266 (583)
                      +.    ..+.+..+++.+|.+.
T Consensus       407 l~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        407 LPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHHhhcCCCccEEEeeCCCcc
Confidence            43    4588899999999876

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=2.4e-20  Score=148.53  Aligned_cols=163  Identities=29%  Similarity=0.449  Sum_probs=127.7

Q ss_pred             cccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEE
Q 007962           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (583)
Q Consensus        41 ~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~  120 (583)
                      ++++.+++.|.||+|+++.+|..++.+.+|++|++++|++..+|..++.+++|+.|++.-|++..+|..|+.++.|+.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            45577888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCCcCC--cCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCc
Q 007962          121 CSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (583)
Q Consensus       121 l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~  198 (583)
                      +.+|.+.  .+|..|..+..|+.|++++|.+..+|.+.+++++|+.|.+..|++-.++.. ++.+.+|++|.+.+|.++.
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeee
Confidence            8888776  667777777788888888888887777777778777777777777666555 6666777777777777666


Q ss_pred             cchhhc
Q 007962          199 MPETIG  204 (583)
Q Consensus       199 ~~~~l~  204 (583)
                      +|..++
T Consensus       188 lppel~  193 (264)
T KOG0617|consen  188 LPPELA  193 (264)
T ss_pred             cChhhh
Confidence            665444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.75  E-value=4.8e-20  Score=146.88  Aligned_cols=201  Identities=33%  Similarity=0.550  Sum_probs=175.8

Q ss_pred             hhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCccc
Q 007962          375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (583)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  454 (583)
                      .++....++.|.+++|+++.+|+.+..+.+|+.|++++|++.+.+... +.+++|+.|++.-|++.-.+.. |+.+|.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprg-fgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRG-FGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccc-cCCCchhh
Confidence            445667899999999999999999999999999999999999988764 8999999999998887766654 99999999


Q ss_pred             EEeCCCCccCC-CCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCC
Q 007962          455 ILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI  533 (583)
Q Consensus       455 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l  533 (583)
                      .||+..|++.. ..+..|-.+..|+-|++++|.+..+|.+++.+++|+.|.+.+|++-++|..++.+++|++|++.||++
T Consensus       106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            99999998865 44666777899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCcccc--ccccceeeccCCCCccchhHHhccchHHHHHHHh
Q 007962          534 SALPPELGLL--EPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK  577 (583)
Q Consensus       534 ~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~  577 (583)
                      +.+|+++..+  ..+=++..+..|++-..-.+.|.......+.|++
T Consensus       186 ~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yir  231 (264)
T KOG0617|consen  186 TVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIR  231 (264)
T ss_pred             eecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHh
Confidence            9999987553  1234577788999888878888777777777765

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=2e-16  Score=152.97  Aligned_cols=224  Identities=25%  Similarity=0.258  Sum_probs=142.2

Q ss_pred             ccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCcc-------cchhhhCCCCccEEEccCCccc-cCCccc
Q 007962           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIM-KIPDEI  110 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~~-------l~~~~~~~~~L~~L~L~~~~l~-~l~~~~  110 (583)
                      ..+|++++++++.++     .++..+...+.++.++++++.+..       ++..+..+++|++|++++|.+. ..+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            466888888888873     455667778888888888876652       2345677888888888888775 333334


Q ss_pred             cccC---cccEEEcCCCcCCc-----CCcccccC-CCCCEEEccccccC-----CCCcccccCCCCcEEEecCCcceeec
Q 007962          111 GSAT---ALVKFDCSSNQLKE-----LPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS  176 (583)
Q Consensus       111 ~~l~---~L~~L~l~~~~~~~-----~~~~~~~~-~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~i~~~~  176 (583)
                      ..+.   +|++|++++|.+..     +...+..+ ++|++|++++|.+.     .+...+..+++|++|++++|.+....
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            3333   48888888887762     22344555 77888888888766     33445666777888888877766321


Q ss_pred             h----hhhcccccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcCcc--cC---CCC-cCCCCCcEEEcCCCC
Q 007962          177 N----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS--IP---SSI-SGCCSLAEFYMGNNA  241 (583)
Q Consensus       177 ~----~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~--~~---~~~-~~~~~L~~L~l~~~~  241 (583)
                      .    ..+...+.|++|++++|.+..     +...+..+++|++|++++|.+..  +.   ..+ ...+.|++|++.+|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            1    123444577777777776642     23345556777777777776652  11   111 123667777777776


Q ss_pred             Cc-----cCchhhhCCCCCCEEEccCCcccc
Q 007962          242 LS-----ALPAELGKLSKLGTLDLHSNQLKE  267 (583)
Q Consensus       242 ~~-----~l~~~l~~~~~L~~L~l~~~~l~~  267 (583)
                      ++     .+...+..+++|+++++++|.+..
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            64     223345555677777777776664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.61  E-value=7.1e-16  Score=149.09  Aligned_cols=254  Identities=22%  Similarity=0.235  Sum_probs=184.1

Q ss_pred             HHHHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-------hhhHhhCCCCCCcEEEc
Q 007962            3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------KLKEDLRNLPLLTVLNV   75 (583)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-------~l~~~~~~~~~L~~L~L   75 (583)
                      .++.....+++++++++.+++-+......        .+...++++.++++++.+.       .++..+.++++|+.|++
T Consensus        17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~--------~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l   88 (319)
T cd00116          17 ELLPKLLCLQVLRLEGNTLGEEAAKALAS--------ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL   88 (319)
T ss_pred             HHHHHHhhccEEeecCCCCcHHHHHHHHH--------HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence            34566677999999999986432211111        1122567999999988766       23456888999999999


Q ss_pred             CCCCCcc-cchhhhCC---CCccEEEccCCccc-----cCCcccccc-CcccEEEcCCCcCC-----cCCcccccCCCCC
Q 007962           76 SHNKLSE-LPAAIGEL---HMLKSLDVSFNSIM-----KIPDEIGSA-TALVKFDCSSNQLK-----ELPSSLGRCLNLS  140 (583)
Q Consensus        76 ~~~~l~~-l~~~~~~~---~~L~~L~L~~~~l~-----~l~~~~~~l-~~L~~L~l~~~~~~-----~~~~~~~~~~~L~  140 (583)
                      ++|.+.. .+..+..+   ++|++|++++|.++     .+...+..+ ++|+.|++++|.++     .++..+..+++|+
T Consensus        89 ~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~  168 (319)
T cd00116          89 SDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLK  168 (319)
T ss_pred             cCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcC
Confidence            9998873 33344444   45999999999876     233445667 89999999999987     3345677888999


Q ss_pred             EEEccccccC-----CCCcccccCCCCcEEEecCCcceeechh----hhcccccCcEEEcCCCcCCcc-----chhh-cC
Q 007962          141 DFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNGM-----PETI-GS  205 (583)
Q Consensus       141 ~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~~~~-----~~~l-~~  205 (583)
                      +|++++|.+.     .++..+..+++|++|++++|.+......    .+..+++|++|++++|.+...     ...+ ..
T Consensus       169 ~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~  248 (319)
T cd00116         169 ELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSP  248 (319)
T ss_pred             EEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence            9999999887     2444566778999999999988754332    355678899999999988641     1111 12


Q ss_pred             CccccEEEccCCcCc-----ccCCCCcCCCCCcEEEcCCCCCccC-----chhhhCC-CCCCEEEccCCc
Q 007962          206 LSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALSAL-----PAELGKL-SKLGTLDLHSNQ  264 (583)
Q Consensus       206 ~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~l-----~~~l~~~-~~L~~L~l~~~~  264 (583)
                      .+.|++|++++|.++     .+...+..+++|+.+++++|.+..-     ...+... +.|+++++.++.
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            479999999999885     3344566678999999999998833     3334444 688888887764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.43  E-value=2.4e-14  Score=128.14  Aligned_cols=222  Identities=21%  Similarity=0.208  Sum_probs=141.6

Q ss_pred             ccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCc----ccc-------hhhhCCCCccEEEccCCccc-cC
Q 007962           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI  106 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~----~l~-------~~~~~~~~L~~L~L~~~~l~-~l  106 (583)
                      ...+++++||+|.+.     .+...+.+.+.|+..++++--..    .+|       .++-.+++|++|+||+|.+. +.
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            457888899988776     34556788888888888865322    333       34566788999999998776 32


Q ss_pred             Cc----cccccCcccEEEcCCCcCCcC--------------CcccccCCCCCEEEccccccCC-----CCcccccCCCCc
Q 007962          107 PD----EIGSATALVKFDCSSNQLKEL--------------PSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMS  163 (583)
Q Consensus       107 ~~----~~~~l~~L~~L~l~~~~~~~~--------------~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~  163 (583)
                      ++    -+.+++.|++|.+.+|.+...              .+....-+.|+++.++.|.+..     +...+...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            22    255688888888888877521              1234456788888888887763     344566677888


Q ss_pred             EEEecCCccee----echhhhcccccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcCcc-----cCCCC-cC
Q 007962          164 KLDVEGNKLTV----LSNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSI-SG  228 (583)
Q Consensus       164 ~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~-~~  228 (583)
                      .+.+..|.|..    .-...+..+++|+.|++++|.++.     +...++.+++|+.+++++|.+..     +...+ ..
T Consensus       189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~  268 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES  268 (382)
T ss_pred             eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence            88888777662    233446677777777777777642     33455566677777777776551     11112 23


Q ss_pred             CCCCcEEEcCCCCCc-----cCchhhhCCCCCCEEEccCCcc
Q 007962          229 CCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQL  265 (583)
Q Consensus       229 ~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l  265 (583)
                      .|.|+.+.+.+|.|+     .+...+...+.|..|++++|.+
T Consensus       269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            556666666666555     1122334455555566655554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=2.3e-14  Score=136.13  Aligned_cols=205  Identities=29%  Similarity=0.375  Sum_probs=125.3

Q ss_pred             hHHHHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCc
Q 007962            2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS   81 (583)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~   81 (583)
                      .+++..|-+-+.+.+++..+..+|-+.+.  ++         +..-...|++.|+...+|..+..|..|+.+.|..|.+-
T Consensus        43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~--~~---------ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r  111 (722)
T KOG0532|consen   43 ERALEEAEYSGRLLLSGRRLKEFPRGAAS--YD---------LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR  111 (722)
T ss_pred             hHHHHHHhhhcccccccchhhcCCCcccc--cc---------ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence            45677777888888888888888876654  22         34455567777777777766666666777777777777


Q ss_pred             ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCC
Q 007962           82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK  161 (583)
Q Consensus        82 ~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~  161 (583)
                      .+|.++.++..|++++|+.|.+..+|..+..++ |+.|.+++|+++.+|..++....|..|+.+.|.+..++..+..+.+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s  190 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS  190 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence            777777777777777777777666666665553 5566666666666665555555555555555555555555555555


Q ss_pred             CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCc
Q 007962          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL  220 (583)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  220 (583)
                      |+.|.+..|++.+++.. +. .-.|..|+++.|.+..+|..|..+..|++|-+.+|.+.
T Consensus       191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence            55555555555544443 22 22344445555554444444444445555555444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.37  E-value=1.6e-13  Score=120.06  Aligned_cols=130  Identities=38%  Similarity=0.515  Sum_probs=78.8

Q ss_pred             CCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeC
Q 007962          426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL  505 (583)
Q Consensus       426 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  505 (583)
                      .+.|+++++++|.|+.+... ..-.|.++.|++|+|.+...+.  +..+++|+.|++++|.++.+..+-..+.++++|.+
T Consensus       283 Wq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             Hhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            34566666666666655432 4445666666666666655443  55666666666666666665444445666666666


Q ss_pred             CCCcCCccchhhcCCCCCCEEeCCCCCCCcCCC--CccccccccceeeccCCCCccc
Q 007962          506 SQNSLQSIPEGFKNLTSLTELDLSDNNISALPP--ELGLLEPSLQALRLDGNPLRSI  560 (583)
Q Consensus       506 ~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~  560 (583)
                      ++|.+.++ ++++.+.+|..||+++|+|..+.+  .++.+ |.|+.+.+.|||++.+
T Consensus       360 a~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCCcccc
Confidence            66666666 456666666777777766664332  34444 6666666777766544

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=6.5e-14  Score=133.14  Aligned_cols=191  Identities=33%  Similarity=0.468  Sum_probs=170.6

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCC
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~   90 (583)
                      -...|++.+.+..+|..+..             +..|+.+.|.+|.+..+|..+.++..|+++||+.|+++.+|..++.+
T Consensus        77 t~~aDlsrNR~~elp~~~~~-------------f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l  143 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACA-------------FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL  143 (722)
T ss_pred             hhhhhccccccccCchHHHH-------------HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC
Confidence            45678999999999997754             56799999999999999999999999999999999999999988877


Q ss_pred             CCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC
Q 007962           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (583)
Q Consensus        91 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~  170 (583)
                      + |+.|-+++|+++.+|+.++.+.+|.+|+.+.|.+.++|..++.+.+|+.|++..|....+|+.+. .-.|..||++.|
T Consensus       144 p-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN  221 (722)
T KOG0532|consen  144 P-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN  221 (722)
T ss_pred             c-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccC
Confidence            6 89999999999999999999999999999999999999999999999999999999999999888 556999999999


Q ss_pred             cceeechhhhcccccCcEEEcCCCcCCccchhhcCC---ccccEEEccCC
Q 007962          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL---SRLIRLDLHQN  217 (583)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~---~~L~~L~l~~~  217 (583)
                      ++..++.. |..+..|++|.|.+|.+..=|..++..   .=.++|+...|
T Consensus       222 kis~iPv~-fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  222 KISYLPVD-FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ceeecchh-hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            99999887 999999999999999998877655432   23466666666

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.32  E-value=2.9e-12  Score=127.37  Aligned_cols=176  Identities=35%  Similarity=0.513  Sum_probs=87.2

Q ss_pred             CCCCccEEEccCCccccCCccccccC-cccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEe
Q 007962           89 ELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  167 (583)
                      ..+.++.|++.++.++.++......+ +|+.|+++++.+..++..+..+++|+.|++++|++..++......+.|+.|++
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             cccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence            33445555555555554444444442 45555555555554444444555555555555555544444434455555555


Q ss_pred             cCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCch
Q 007962          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA  247 (583)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~  247 (583)
                      +++.+..++.. ......|+++.+++|.....+..+..+.++..+.+.++.+..++..++.++.++.+++++|.+..++.
T Consensus       194 s~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         194 SGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             cCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence            55555544442 12333355555555544333444444555555555555554444455555555555555555555544


Q ss_pred             hhhCCCCCCEEEccCCccc
Q 007962          248 ELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       248 ~l~~~~~L~~L~l~~~~l~  266 (583)
                       ++...+++.++++++.+.
T Consensus       273 -~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         273 -LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             -ccccCccCEEeccCcccc
Confidence             555555555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.30  E-value=2.7e-12  Score=127.54  Aligned_cols=177  Identities=31%  Similarity=0.463  Sum_probs=136.3

Q ss_pred             cCccEEEcCCCcchhhhHhhCCCC-CCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           45 VDLQKLILAHNNIEKLKEDLRNLP-LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~~~~~~~~-~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +.++.|++.++.+++++....... +|+.|+++++.+..++..+..+++|+.|++++|.+..++......+.|+.|++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            567888888888888877666664 8888888888888887778888888888888888888877766788888888888


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      |++..+|........|+++.+++|.+...+..+.++.++..+.+..+.+..+... +..++.++.|++++|.+..++. +
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~n~i~~i~~-~  273 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSISS-L  273 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-hccccccceecccccccccccc-c
Confidence            8888887766666678888888886666666777778888888777776664332 6777778888888888877765 7


Q ss_pred             cCCccccEEEccCCcCcccC
Q 007962          204 GSLSRLIRLDLHQNRILSIP  223 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~  223 (583)
                      +...+++.++++++.+...+
T Consensus       274 ~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         274 GSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             cccCccCEEeccCccccccc
Confidence            77788888888887766443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.30  E-value=1.3e-13  Score=123.42  Aligned_cols=238  Identities=25%  Similarity=0.322  Sum_probs=120.8

Q ss_pred             HhhCCCCCCcEEEcCCCCCc-----ccchhhhCCCCccEEEccCCccc----cCCcc-------ccccCcccEEEcCCCc
Q 007962           62 EDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM----KIPDE-------IGSATALVKFDCSSNQ  125 (583)
Q Consensus        62 ~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~~~~L~~L~L~~~~l~----~l~~~-------~~~l~~L~~L~l~~~~  125 (583)
                      +....+..++.|+||+|.+.     -+...+.+.++|+..++++--..    .+|+.       +..+++|++++||.|-
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            45677888999999999877     23446778889999998864222    34443       3445566666666665


Q ss_pred             CC-cCC----cccccCCCCCEEEccccccCCCCc-ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc
Q 007962          126 LK-ELP----SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (583)
Q Consensus       126 ~~-~~~----~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (583)
                      +. ..+    ..+..+..|++|.+.+|.+..... .+++  .|.+|.         ........+.|+.+....|++..-
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~  172 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENG  172 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence            54 111    233455566666666555541110 0000  000000         000012234455555555544322


Q ss_pred             -----chhhcCCccccEEEccCCcCc-----ccCCCCcCCCCCcEEEcCCCCCc-----cCchhhhCCCCCCEEEccCCc
Q 007962          200 -----PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQ  264 (583)
Q Consensus       200 -----~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~  264 (583)
                           ...+...+.|+.+.+..|.+.     .+...+..|++|+.|++++|.++     .+...+..+++|+.+++++|.
T Consensus       173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl  252 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL  252 (382)
T ss_pred             cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence                 223444455555555555443     11233455555555555555555     223344555555666665555


Q ss_pred             cccccccc-------ccccccEEECcCCCCCC-----CChhhcccCCCcEEecCCCcc
Q 007962          265 LKEYCVEA-------CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPL  310 (583)
Q Consensus       265 l~~~~~~~-------~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~  310 (583)
                      +..-....       ..++|+.+.+.+|.++.     +...+...+.|..|++++|.+
T Consensus       253 l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  253 LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            54322111       12235555555555444     222344567777777877766

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=3.2e-12  Score=107.71  Aligned_cols=105  Identities=29%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             ccCccEEEcCCCcchhhhHhhC-CCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCcccc-ccCcccEEEc
Q 007962           44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG-SATALVKFDC  121 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~l  121 (583)
                      +.++++|+|+++.|+.+. .++ .+.+|+.|++++|.++++ +.+..+++|+.|++++|.++.+...+. .+++|++|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            445666677666666663 333 456666666666666665 345556666666666666665544332 4566666666


Q ss_pred             CCCcCCcCC--cccccCCCCCEEEccccccC
Q 007962          122 SSNQLKELP--SSLGRCLNLSDFKASNNCIT  150 (583)
Q Consensus       122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  150 (583)
                      ++|++..+.  ..+..+++|++|++.+|.+.
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            666655432  23445555555555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=7.9e-13  Score=121.90  Aligned_cols=203  Identities=21%  Similarity=0.216  Sum_probs=129.5

Q ss_pred             hCCCCCCcEEEcCCCCCcccc--hhhhCCCCccEEEccCCcccc---CCccccccCcccEEEcCCCcCCcCCc--ccccC
Q 007962           64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPS--SLGRC  136 (583)
Q Consensus        64 ~~~~~~L~~L~L~~~~l~~l~--~~~~~~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~  136 (583)
                      =.++.+|+.+.|.++.+...+  .....|++++.|||++|-+..   +..-..++++|+.|+++.|.+.....  .-..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            356677777777777776554  366677788888887775552   22335677778888888777653321  12255


Q ss_pred             CCCCEEEccccccC--CCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc--hhhcCCccccEE
Q 007962          137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL  212 (583)
Q Consensus       137 ~~L~~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L  212 (583)
                      +.|+.|.++.|++.  ++...+..+++|+.|++.+|....+......-+..|+.|++++|.+...+  ...+.++.|..|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            67777777777776  44445666777777777777533333333445566777777777775544  345667777777


Q ss_pred             EccCCcCccc--CCC-----CcCCCCCcEEEcCCCCCccC--chhhhCCCCCCEEEccCCccc
Q 007962          213 DLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       213 ~l~~~~~~~~--~~~-----~~~~~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~l~  266 (583)
                      +++.+.+..+  |+.     ...+++|+.|++..|++...  ...+..+++|+.+.+..+.++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            7777777643  322     34566777777777777533  335566677777777666555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.27  E-value=5.1e-12  Score=106.52  Aligned_cols=139  Identities=29%  Similarity=0.358  Sum_probs=48.1

Q ss_pred             EcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh-CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcC
Q 007962           51 ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG-ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL  129 (583)
Q Consensus        51 ~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~  129 (583)
                      .+..+.|...+ .+.+..++++|+|+++.|+.+. .++ .+.+|+.|++++|.++.++ .+..+++|+.|++++|.++++
T Consensus         3 ~lt~~~i~~~~-~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i   79 (175)
T PF14580_consen    3 RLTANMIEQIA-QYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI   79 (175)
T ss_dssp             -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-
T ss_pred             ccccccccccc-cccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc
Confidence            34455566554 4556668899999999998774 454 5789999999999988774 577889999999999999888


Q ss_pred             Cccc-ccCCCCCEEEccccccCCCC--cccccCCCCcEEEecCCcceeec---hhhhcccccCcEEEcC
Q 007962          130 PSSL-GRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLS---NNLIASWTMLTELIAS  192 (583)
Q Consensus       130 ~~~~-~~~~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~i~~~~---~~~~~~~~~L~~L~l~  192 (583)
                      ...+ ..+|+|++|++++|++..+.  ..+..+++|+.|++.+|++....   ...+..+|+|+.|+-.
T Consensus        80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            6555 46889999999998887553  35677888888888888776332   2234455556555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.26  E-value=2.6e-12  Score=112.66  Aligned_cols=204  Identities=25%  Similarity=0.278  Sum_probs=132.4

Q ss_pred             hhCCCCCCcEEEcCCCC--Cc-------ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCC---
Q 007962           63 DLRNLPLLTVLNVSHNK--LS-------ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP---  130 (583)
Q Consensus        63 ~~~~~~~L~~L~L~~~~--l~-------~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~---  130 (583)
                      .+.-+..|++|.+++..  +.       .+|-.+..+++|+.+.+++|.-..+-.....=|.|+++.++.......+   
T Consensus       177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~  256 (490)
T KOG1259|consen  177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL  256 (490)
T ss_pred             HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc
Confidence            34445566666655431  11       1122344456666666666644433222223345666655544322111   


Q ss_pred             ---------------------cccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEE
Q 007962          131 ---------------------SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL  189 (583)
Q Consensus       131 ---------------------~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  189 (583)
                                           ..+.....|.++++++|.|..+.++..-.++++.|+++.|.+..+..  ++.+++|++|
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~L  334 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLL  334 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEe
Confidence                                 11223456778888888888877777778888888888888887776  7778888888


Q ss_pred             EcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCc--hhhhCCCCCCEEEccCCcccc
Q 007962          190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKE  267 (583)
Q Consensus       190 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~~  267 (583)
                      ++++|.++.+..|-..+-+++.|.+++|.+..+ +.+..+-+|+.|++++|.|..+.  ..++++|.|+++.+.+|.+..
T Consensus       335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            888888877766666677888888888877765 45667777888888888887553  357788888888888877664


Q ss_pred             cc
Q 007962          268 YC  269 (583)
Q Consensus       268 ~~  269 (583)
                      ++
T Consensus       414 ~v  415 (490)
T KOG1259|consen  414 SV  415 (490)
T ss_pred             cc
Confidence            43

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.5e-12  Score=120.13  Aligned_cols=205  Identities=27%  Similarity=0.265  Sum_probs=132.8

Q ss_pred             cccceeecCCCCCccCC--hhhhccCCccEEEcCCCCCCc---CCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCc
Q 007962          357 VTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLS  430 (583)
Q Consensus       357 ~~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~---l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~  430 (583)
                      .+|+++.+.++.+...+  .....++.++.|+++.|-+..   +.+....+|+|+.|+++.|++..... ..-..+++|+
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            46677777777766554  355567888888888876554   33345677888888888887665322 1123567788


Q ss_pred             EEecCCCCCccCCC-CccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccc--cchhccCcccEEeCCC
Q 007962          431 CLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQ  507 (583)
Q Consensus       431 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~  507 (583)
                      .|.+++|.++.-.. .....+|+|+.|++..|............+..|++|+|++|++...+  ...+.++.|+.|+++.
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            88888887763111 11456788888888777533333334555677888888888777554  3455678888888888


Q ss_pred             CcCCcc--chh-----hcCCCCCCEEeCCCCCCCcCCC--CccccccccceeeccCCCCccchh
Q 007962          508 NSLQSI--PEG-----FKNLTSLTELDLSDNNISALPP--ELGLLEPSLQALRLDGNPLRSIRR  562 (583)
Q Consensus       508 n~l~~l--~~~-----l~~~~~L~~L~l~~~~l~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~  562 (583)
                      |.+.++  |++     ...+++|++|++..|+|..++.  .+..+ ++|+.+.+.+|++..-..
T Consensus       281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l-~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL-ENLKHLRITLNYLNKETD  343 (505)
T ss_pred             cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc-chhhhhhccccccccccc
Confidence            877743  333     4566788888888887765543  23333 677777777777754443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.11  E-value=6.6e-11  Score=125.35  Aligned_cols=221  Identities=24%  Similarity=0.298  Sum_probs=127.4

Q ss_pred             ccCccEEEcCCCc--chhhhH-hhCCCCCCcEEEcCCC-CCcccchhhhCCCCccEEEccCCccccCCccccccCcccEE
Q 007962           44 AVDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHN-KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF  119 (583)
Q Consensus        44 ~~~L~~L~ls~~~--i~~l~~-~~~~~~~L~~L~L~~~-~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L  119 (583)
                      +++|++|-+..+.  +..++. .|..+|.|++|||++| .+..+|..++.+.+|++|+++++.+..+|..++++..|.+|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            4467777777775  555553 4777888888888866 45678888888888888888888888888888888888888


Q ss_pred             EcCCCcCC-cCCcccccCCCCCEEEccccccCC---CCcccccCCCCcEEEecCCcceeechhhhcccccCc----EEEc
Q 007962          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT----ELIA  191 (583)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~---l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~----~L~l  191 (583)
                      ++..+... .++.....+.+|++|.+.......   .-..+..+.+|+.+....... .+... +..+.+|+    .+.+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~-l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED-LLGMTRLRSLLQSLSI  701 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh-hhhhHHHHHHhHhhhh
Confidence            88876533 444555567888888877665221   112334444444444433222 11111 23333333    2233


Q ss_pred             CCCcCCccchhhcCCccccEEEccCCcCcccCC-CC-----cC-CCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCc
Q 007962          192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SI-----SG-CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ  264 (583)
Q Consensus       192 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~-----~~-~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~  264 (583)
                      .++.....+..+..+.+|+.|.+.++.+..... ..     .. ++++..+.+.++.....+.+....++|+.+.+..+.
T Consensus       702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR  781 (889)
T ss_pred             cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence            333334444556666777777777776652211 11     11 223333333344333333444455677777776665


Q ss_pred             cc
Q 007962          265 LK  266 (583)
Q Consensus       265 l~  266 (583)
                      ..
T Consensus       782 ~~  783 (889)
T KOG4658|consen  782 LL  783 (889)
T ss_pred             cc
Confidence            44

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.02  E-value=3.6e-11  Score=119.47  Aligned_cols=240  Identities=27%  Similarity=0.348  Sum_probs=108.4

Q ss_pred             CCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccc
Q 007962           68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN  147 (583)
Q Consensus        68 ~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~  147 (583)
                      ..++.+.+..+.+..+-..+..+.+|+.|++.+|.+..+...+..+++|++|++++|.++.+ ..+..++.|+.|++.+|
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N  150 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN  150 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC
Confidence            33334444444444332334444444444444444444433344444444444444444444 23333444555555555


Q ss_pred             ccCCCCcccccCCCCcEEEecCCcceeech-hhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCC
Q 007962          148 CITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI  226 (583)
Q Consensus       148 ~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  226 (583)
                      .+..+. .+..++.|+.+++++|.+..+.. . ...+..++.+.+.++.+..+. ++.....+..+++..+.+..+. .+
T Consensus       151 ~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~-~l  226 (414)
T KOG0531|consen  151 LISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE-GL  226 (414)
T ss_pred             cchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc-Cc
Confidence            444442 33334555555555555544443 1 234444555555555444331 1222233333344444444331 11


Q ss_pred             cCCC--CCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCC----CCh-hhcccCC
Q 007962          227 SGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPP-EIGKMTT  299 (583)
Q Consensus       227 ~~~~--~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~----~~~-~~~~~~~  299 (583)
                      ....  +|+.+++.++.+...+..+..+.++..+++.++.+...........+..+....+.+..    ... .....+.
T Consensus       227 ~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (414)
T KOG0531|consen  227 NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPT  306 (414)
T ss_pred             ccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccccc
Confidence            2222  25666666666655545555556666666666655544333333333333333333331    111 1344566


Q ss_pred             CcEEecCCCcccc
Q 007962          300 LRKLLLTGNPLRT  312 (583)
Q Consensus       300 L~~L~l~~~~~~~  312 (583)
                      ++.+.+.+++...
T Consensus       307 ~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  307 LVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccCcccc
Confidence            6777777665543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.00  E-value=3.9e-11  Score=119.20  Aligned_cols=218  Identities=27%  Similarity=0.375  Sum_probs=166.3

Q ss_pred             cccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962           43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (583)
Q Consensus        43 ~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~  122 (583)
                      .+..++.+++..+.|+.+-..+..+.+|+.+++.++.+..+...+..+++|++|++++|.++.+. .+..++.|+.|+++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence            35677778888888888656788899999999999999988666889999999999999998763 56777889999999


Q ss_pred             CCcCCcCCcccccCCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch
Q 007962          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (583)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (583)
                      +|.+..+. .+..++.|+.+++++|.+..+... +..+.+++.+.+.++.+..+..  +.....+..+++..+.+..+..
T Consensus       149 ~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~  225 (414)
T KOG0531|consen  149 GNLISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG  225 (414)
T ss_pred             cCcchhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC
Confidence            99998874 566689999999999999887553 5888999999999998887765  4444455555777887765532


Q ss_pred             hhcCCcc--ccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccc
Q 007962          202 TIGSLSR--LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       202 ~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~  266 (583)
                       +.....  |+.++++++.+..++..+..++++..+++.++.+..+ ..+...+.+..+....+.+.
T Consensus       226 -l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  226 -LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL-EGLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             -cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc-ccccccchHHHhccCcchhc
Confidence             222233  8899999998887767788888999999998887754 22333445555555555443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.90  E-value=1.4e-09  Score=115.54  Aligned_cols=262  Identities=22%  Similarity=0.276  Sum_probs=174.6

Q ss_pred             cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCC--Ccccch-hhhCCCCccEEEccCC-ccccCCccccccCcccEEE
Q 007962           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFD  120 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~--l~~l~~-~~~~~~~L~~L~L~~~-~l~~l~~~~~~l~~L~~L~  120 (583)
                      ...+.+.+-++.+..++... .+++|+.|-+.++.  +..++. .|..++.|++|||++| .+.++|..++.+-+|++|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            46788888888888776443 45689999888885  566655 5888999999999988 5679999999999999999


Q ss_pred             cCCCcCCcCCcccccCCCCCEEEccccccC-CCCcccccCCCCcEEEecCCcc--eeechhhhcccccCcEEEcCCCcCC
Q 007962          121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNLLN  197 (583)
Q Consensus       121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~i--~~~~~~~~~~~~~L~~L~l~~~~~~  197 (583)
                      ++++.+..+|..+.++.+|.+|++..+... .++.....+++|++|.+.....  .......+..+.+|+.+....... 
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-  680 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-  680 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence            999999999999999999999999987654 4455666799999999976542  222223345556666666544433 


Q ss_pred             ccchhhcCCccc----cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCch-h-----hhC-CCCCCEEEccCCcc-
Q 007962          198 GMPETIGSLSRL----IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-E-----LGK-LSKLGTLDLHSNQL-  265 (583)
Q Consensus       198 ~~~~~l~~~~~L----~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~-----l~~-~~~L~~L~l~~~~l-  265 (583)
                      .+...+..+..|    +.+.+.++.....+..+..+.+|+.|.+.++.+..... .     ... ++++..+.+.++.. 
T Consensus       681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~  760 (889)
T KOG4658|consen  681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML  760 (889)
T ss_pred             HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc
Confidence            111112222222    23443444555666778888999999999888763211 1     111 33444444445432 


Q ss_pred             cccccccccccccEEECcCCCCCC-CChhhcccCCCcEEecCCC
Q 007962          266 KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGN  308 (583)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~  308 (583)
                      .......++++|+.+.+..|.... +.+....+..+.++.+..+
T Consensus       761 r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~  804 (889)
T KOG4658|consen  761 RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN  804 (889)
T ss_pred             cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence            334445577788888888775444 3333444444554444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2.4e-09  Score=74.04  Aligned_cols=59  Identities=46%  Similarity=0.689  Sum_probs=33.7

Q ss_pred             cccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCC
Q 007962          499 QLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL  557 (583)
Q Consensus       499 ~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  557 (583)
                      +|++|++++|.++.+|. .|..+++|++|++++|+|+.+++..+..+++|+.|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            45555555555555543 355556666666666666655555555556666666666553

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=3.5e-09  Score=73.23  Aligned_cols=59  Identities=39%  Similarity=0.584  Sum_probs=32.6

Q ss_pred             CCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccc
Q 007962          428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ  486 (583)
Q Consensus       428 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  486 (583)
                      +|++|++++|++..++...|.++++|++|++++|.+..+.+.+|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555555555555555555555555555555555555555555555555554

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=4.8e-10  Score=98.61  Aligned_cols=175  Identities=26%  Similarity=0.248  Sum_probs=112.2

Q ss_pred             CccEEEcCCCCCCc--CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC-CccCC-CCccCCCCcccEE
Q 007962          381 EITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVP-SDGFKDIPMLQIL  456 (583)
Q Consensus       381 ~L~~L~l~~~~l~~--l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L  456 (583)
                      .++.+|++...++.  +--.+++|.+|+.|.+.|+++.+.....+..-.+|+.++++.|+ +++.. .-.+..|+.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            57778888776654  33346678888888888888887777777778888888888765 33211 1125778888888


Q ss_pred             eCCCCccCCCCCCCC-C-CCCccceEeccccc--cc--ccccchhccCcccEEeCCCCc-CC-ccchhhcCCCCCCEEeC
Q 007962          457 DLSYNIASLPENPPF-S-SLPHLQELYLRRMQ--LR--EAPTDILRLQQLRILDLSQNS-LQ-SIPEGFKNLTSLTELDL  528 (583)
Q Consensus       457 ~l~~~~~~~~~~~~~-~-~l~~L~~L~l~~~~--l~--~~~~~~~~~~~L~~L~l~~n~-l~-~l~~~l~~~~~L~~L~l  528 (583)
                      +++-|.......... . --++|+.|+++||.  +.  .+..-...|++|..||+++|. ++ +.-..+..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            888775543222111 1 23678888888883  22  222223468888888888884 44 33344677888888888


Q ss_pred             CCC-CCC-cCCCCccccccccceeeccCCC
Q 007962          529 SDN-NIS-ALPPELGLLEPSLQALRLDGNP  556 (583)
Q Consensus       529 ~~~-~l~-~~~~~~~~~~~~L~~L~l~~~~  556 (583)
                      +.| .|- .---++. ..|+|.+|++-||-
T Consensus       346 sRCY~i~p~~~~~l~-s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  346 SRCYDIIPETLLELN-SKPSLVYLDVFGCV  374 (419)
T ss_pred             hhhcCCChHHeeeec-cCcceEEEEecccc
Confidence            888 443 1111122 23788888888874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=1.9e-09  Score=94.92  Aligned_cols=173  Identities=17%  Similarity=0.174  Sum_probs=106.4

Q ss_pred             CCCcEEEcCCCCCc--ccchhhhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCCc-CCcC--CcccccCCCCCE
Q 007962           68 PLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQ-LKEL--PSSLGRCLNLSD  141 (583)
Q Consensus        68 ~~L~~L~L~~~~l~--~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~-~~~~--~~~~~~~~~L~~  141 (583)
                      ..|+++||++..++  ++-..++.|.+|+.|++.++.+. .+-..+.+..+|+.|+++.|. +++.  .-.+..|+.|+.
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35777777776665  34445667777777777777665 333446666777777777664 4322  224667778888


Q ss_pred             EEccccccCC-CCc-cc-ccCCCCcEEEecCCcce----eechhhhcccccCcEEEcCCCcCC--ccchhhcCCccccEE
Q 007962          142 FKASNNCITS-LPE-DL-ADCSKMSKLDVEGNKLT----VLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRL  212 (583)
Q Consensus       142 L~l~~~~~~~-l~~-~l-~~l~~L~~L~l~~~~i~----~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L  212 (583)
                      |++++|.... ... .. .--++|..|+++|+.-.    .+. ....++++|.+|+++++..-  .....+..++.|++|
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHH-HHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            8888775541 100 11 11256777777776321    121 22556788888888887552  334456677888888


Q ss_pred             EccCCcCc--ccCCCCcCCCCCcEEEcCCCC
Q 007962          213 DLHQNRIL--SIPSSISGCCSLAEFYMGNNA  241 (583)
Q Consensus       213 ~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~  241 (583)
                      .++.|..-  +..-.+...|.|.+|++.++-
T Consensus       344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             ehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            88887532  111235677888888887763

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=8.7e-08  Score=99.83  Aligned_cols=103  Identities=28%  Similarity=0.391  Sum_probs=55.3

Q ss_pred             CcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccc-ccccchhccCcccEEeCCC
Q 007962          429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQ  507 (583)
Q Consensus       429 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~  507 (583)
                      ++.|+|++|.+.+.....+..+++|+.|++++|.+.+..+..+..+++|+.|+|++|.++ .+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            455555555555433334555555555555555555554545555555555555555555 4555555555555555555


Q ss_pred             CcCC-ccchhhcCC-CCCCEEeCCCC
Q 007962          508 NSLQ-SIPEGFKNL-TSLTELDLSDN  531 (583)
Q Consensus       508 n~l~-~l~~~l~~~-~~L~~L~l~~~  531 (583)
                      |.++ .+|..+... .++..+++.+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCC
Confidence            5555 445444332 34455555555

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.55  E-value=4.1e-10  Score=110.80  Aligned_cols=180  Identities=27%  Similarity=0.331  Sum_probs=123.8

Q ss_pred             ChhhhccCCccEEEcCCCCCCcCCccccCC-CCCcEEEccCCCCCC---CChhh---hh---cCCCCcEEecCCCCCccC
Q 007962          373 PSEIWEAGEITKLDLSRNSIQELPPELSSC-ASLQTLILSRNKIKD---WPDAI---LT---SLSSLSCLKLDNNPLRQV  442 (583)
Q Consensus       373 ~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~-~~L~~L~l~~~~l~~---~~~~~---l~---~l~~L~~L~l~~~~~~~~  442 (583)
                      |-.++.+.+|+.|.+.+|.+...- .+..+ .+|++|...+ .+..   +....   +.   -...|...+.+.|+++.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence            445666788999999998876521 11111 2344443322 1111   10000   00   123566777788887766


Q ss_pred             CCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCC
Q 007962          443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTS  522 (583)
Q Consensus       443 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~  522 (583)
                      ... ++-++.|+.|+++.|++.+..  .+..|+.|++|+|+.|++..+|..-..-..|..|.+++|.++++ -++.++.+
T Consensus       180 D~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~Lks  255 (1096)
T KOG1859|consen  180 DES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKS  255 (1096)
T ss_pred             HHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhh
Confidence            543 777899999999999998876  58889999999999999998765433333499999999999988 46889999


Q ss_pred             CCEEeCCCCCCCcCCCC-ccccccccceeeccCCCCc
Q 007962          523 LTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       523 L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~~~~~  558 (583)
                      |+.||++.|-|..-... ....+..|++|++.|||+-
T Consensus       256 L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99999999966633221 1112378999999999974

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.52  E-value=2.7e-09  Score=98.47  Aligned_cols=134  Identities=22%  Similarity=0.245  Sum_probs=67.0

Q ss_pred             CCCCCcEEEccCCC-CCCCChhhh-hcCCCCcEEecCCCC-CccCCCCcc-CCCCcccEEeCCCCccCC-C-CCCCCCCC
Q 007962          401 SCASLQTLILSRNK-IKDWPDAIL-TSLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNIASL-P-ENPPFSSL  474 (583)
Q Consensus       401 ~~~~L~~L~l~~~~-l~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~-~~~~~~~l  474 (583)
                      .+.+|+.++.+++. +++.....+ .++.+|+.+.+.+|+ +++.....+ .+++.|+.+++..+.... . ....-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            45566666666652 222222222 345666666666655 222221111 345566666665553321 1 11122456


Q ss_pred             CccceEeccccc-cccc-----ccchhccCcccEEeCCCCcCC--ccchhhcCCCCCCEEeCCCC-CCC
Q 007962          475 PHLQELYLRRMQ-LREA-----PTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDN-NIS  534 (583)
Q Consensus       475 ~~L~~L~l~~~~-l~~~-----~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~-~l~  534 (583)
                      +.|+.+.+++|. +++.     ...-..+..|+.+.+++|...  ..-+.+..++.|+++++-+| .++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            666676666663 3321     112234556777777777554  22245666677777777776 444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.51  E-value=1.8e-08  Score=78.21  Aligned_cols=109  Identities=19%  Similarity=0.307  Sum_probs=62.2

Q ss_pred             CccEEEcCCCcchhhhHh---hCCCCCCcEEEcCCCCCcccchhhh-CCCCccEEEccCCccccCCccccccCcccEEEc
Q 007962           46 DLQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIG-ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (583)
Q Consensus        46 ~L~~L~ls~~~i~~l~~~---~~~~~~L~~L~L~~~~l~~l~~~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l  121 (583)
                      .+-.++|++|.+-.+++.   +.+..+|+.++|++|.+.+.|..|. .++..+.+++.+|.+..+|..+..++.|+.|++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            445556666655544432   3444555556666666665555443 344566666666666666666666666666666


Q ss_pred             CCCcCCcCCcccccCCCCCEEEccccccCCCCc
Q 007962          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPE  154 (583)
Q Consensus       122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~  154 (583)
                      +.|++...|..+..+.++-.|+..++.+..++.
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            666666555555555566666666665555543

>PLN03150 hypothetical protein; Provisional

Probab=98.51  E-value=2.6e-07  Score=96.28  Aligned_cols=105  Identities=31%  Similarity=0.390  Sum_probs=68.0

Q ss_pred             cccEEeCCCCccCCCCCCCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCC
Q 007962          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS  529 (583)
Q Consensus       452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~  529 (583)
                      .++.|++++|.+.+..+..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ .+|+.+.++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3566677777666666666666777777777777665 56666666777777777777766 566666677777777777


Q ss_pred             CCCCC-cCCCCccccccccceeeccCCC
Q 007962          530 DNNIS-ALPPELGLLEPSLQALRLDGNP  556 (583)
Q Consensus       530 ~~~l~-~~~~~~~~~~~~L~~L~l~~~~  556 (583)
                      +|+++ .+|..+.....++..+++.+|+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            77666 4555443333345566666654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.42  E-value=1.1e-08  Score=94.50  Aligned_cols=157  Identities=21%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             cCCCCCcEEEccCC-CCCCCChh-hhhcCCCCcEEecCCCCC-ccCCCCc-cCCCCcccEEeCCCCc-cCCCCCCCC-CC
Q 007962          400 SSCASLQTLILSRN-KIKDWPDA-ILTSLSSLSCLKLDNNPL-RQVPSDG-FKDIPMLQILDLSYNI-ASLPENPPF-SS  473 (583)
Q Consensus       400 ~~~~~L~~L~l~~~-~l~~~~~~-~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~-~~  473 (583)
                      ..+.-+.++++..| .+++.... .-..+..|+.+..+++.- ++....+ -.++++|+.+.+..|+ +++.....+ .+
T Consensus       265 ~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn  344 (483)
T KOG4341|consen  265 AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN  344 (483)
T ss_pred             ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence            34555666676665 44444322 224678999999998653 2211111 3568999999999885 566665555 35


Q ss_pred             CCccceEeccccccc---ccccchhccCcccEEeCCCCcCC-cc-----chhhcCCCCCCEEeCCCC-CCCcCCCCcccc
Q 007962          474 LPHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQ-SI-----PEGFKNLTSLTELDLSDN-NISALPPELGLL  543 (583)
Q Consensus       474 l~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~n~l~-~l-----~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~  543 (583)
                      ++.|+.+++.+|...   .+..-..+|+.|+++.+++|.+. +.     ..+-.....|+.+.+++| .++...-+....
T Consensus       345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~  424 (483)
T KOG4341|consen  345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI  424 (483)
T ss_pred             ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence            799999999999544   23333347999999999999644 21     223345678999999999 444444444455


Q ss_pred             ccccceeeccCCC
Q 007962          544 EPSLQALRLDGNP  556 (583)
Q Consensus       544 ~~~L~~L~l~~~~  556 (583)
                      +++|+.+++-+|+
T Consensus       425 c~~Leri~l~~~q  437 (483)
T KOG4341|consen  425 CRNLERIELIDCQ  437 (483)
T ss_pred             Ccccceeeeechh
Confidence            6899999999986

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.42  E-value=3e-09  Score=104.91  Aligned_cols=199  Identities=23%  Similarity=0.208  Sum_probs=126.1

Q ss_pred             hhCCCCCCcEEEcCCCCCc--ccchhhhCCCCccEEEccCCccccCCccccccC-cccEEEcCCCc--C----CcCCccc
Q 007962           63 DLRNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQ--L----KELPSSL  133 (583)
Q Consensus        63 ~~~~~~~L~~L~L~~~~l~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~l~~~~--~----~~~~~~~  133 (583)
                      .+.-+++++++.+-...-.  +-|-.+..++.|++|.+.+|.+... ..+..+. .|++|..+..-  +    ..-..++
T Consensus        79 i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~  157 (1096)
T KOG1859|consen   79 ILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDI  157 (1096)
T ss_pred             HHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhcccc
Confidence            3444455555555333211  1144666788888888888877642 2233332 46666554331  0    0111112


Q ss_pred             cc---CCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccc
Q 007962          134 GR---CLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRL  209 (583)
Q Consensus       134 ~~---~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L  209 (583)
                      ++   .-.|.+.+++.|.+..+...+.-++.|+.|++++|++.+..  ++..+++|++|+++.|.+..+|. ....+. |
T Consensus       158 ~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  158 SNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-L  234 (1096)
T ss_pred             ccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-h
Confidence            11   12566677777777777777777888888888888888766  37888888888888888877664 222333 8


Q ss_pred             cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC--chhhhCCCCCCEEEccCCccc
Q 007962          210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~l~  266 (583)
                      +.|.+++|.++++ ..+.++.+|+.|+++.|-+...  ...++.+..|+.|.+.||.+.
T Consensus       235 ~~L~lrnN~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  235 QLLNLRNNALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eeeeecccHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8888888887766 4577788888888888776633  234666777888888888664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.41  E-value=9.4e-09  Score=79.72  Aligned_cols=138  Identities=21%  Similarity=0.216  Sum_probs=95.2

Q ss_pred             CcEEecCCCCCccCCC--CccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCC
Q 007962          429 LSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLS  506 (583)
Q Consensus       429 L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  506 (583)
                      +..++++.|++..+..  ..+.+...|+..++++|.+.+..+.--..+|..+.|++++|.++.+|..+..++.|+.|+++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            4445555555543322  11344455666677777666554444455678888888899999888888889999999999


Q ss_pred             CCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhcc
Q 007962          507 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR  567 (583)
Q Consensus       507 ~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  567 (583)
                      .|.+...|..+..+.+|-.|+..+|.+..+|-..+.. .....+++.+++++.-.+...++
T Consensus       109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~klqa  168 (177)
T KOG4579|consen  109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKKKLQA  168 (177)
T ss_pred             cCccccchHHHHHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcccccc
Confidence            9998888888777888888999888888887775442 34445556666776665555544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.39  E-value=5e-07  Score=56.78  Aligned_cols=40  Identities=40%  Similarity=0.630  Sum_probs=29.1

Q ss_pred             cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccc
Q 007962           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~   84 (583)
                      ++|++|++++|+|+++|..++++++|++|++++|++++++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            3577888888888888777788888888888888777653

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=5.5e-07  Score=78.68  Aligned_cols=176  Identities=20%  Similarity=0.204  Sum_probs=104.5

Q ss_pred             ccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCc----ccc-------hhhhCCCCccEEEccCCccc-cC
Q 007962           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM-KI  106 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~----~l~-------~~~~~~~~L~~L~L~~~~l~-~l  106 (583)
                      +..++.++||+|.|.     .+...+++-.+|++.+++.-...    .++       .++-+||+|+.++|++|.++ ..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            567888888888886     34456777788888888765333    222       35667888888888888776 33


Q ss_pred             Ccc----ccccCcccEEEcCCCcCCcCC-----c---------ccccCCCCCEEEccccccCCCCcc-----cccCCCCc
Q 007962          107 PDE----IGSATALVKFDCSSNQLKELP-----S---------SLGRCLNLSDFKASNNCITSLPED-----LADCSKMS  163 (583)
Q Consensus       107 ~~~----~~~l~~L~~L~l~~~~~~~~~-----~---------~~~~~~~L~~L~l~~~~~~~l~~~-----l~~l~~L~  163 (583)
                      |+.    +.+-+.|+||.+++|.+.-+.     +         ....-|.|+++.+..|.+...+..     +..-..|+
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk  188 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK  188 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence            333    456777888888888765222     1         123456777777777766644322     22224677


Q ss_pred             EEEecCCcceeech-----hhhcccccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcC
Q 007962          164 KLDVEGNKLTVLSN-----NLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRI  219 (583)
Q Consensus       164 ~L~l~~~~i~~~~~-----~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~  219 (583)
                      ++.+..|.|..-..     .-+..+.+|+.|++++|.++.     +...++..+.|+.|.+.+|-+
T Consensus       189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            77777666652211     113344556666666665532     122333444455555555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=2.3e-07  Score=82.09  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=55.6

Q ss_pred             EEEcCCCcchhhhH--hh-CCCCCCcEEEcCCCCCcc---cchhhhCCCCccEEEccCCccccCCccc-cccCcccEEEc
Q 007962           49 KLILAHNNIEKLKE--DL-RNLPLLTVLNVSHNKLSE---LPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC  121 (583)
Q Consensus        49 ~L~ls~~~i~~l~~--~~-~~~~~L~~L~L~~~~l~~---l~~~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~l  121 (583)
                      .+.+.++.|....+  .| ..+++++.+||.+|.|++   +.+...++|+|+.|+++.|.+......+ ....+|+.|.+
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL  128 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL  128 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence            34444554543332  23 356677777777777663   3334566777777777777655222222 24456666666


Q ss_pred             CCCcCC--cCCcccccCCCCCEEEcccccc
Q 007962          122 SSNQLK--ELPSSLGRCLNLSDFKASNNCI  149 (583)
Q Consensus       122 ~~~~~~--~~~~~~~~~~~L~~L~l~~~~~  149 (583)
                      .++.+.  .....+..+|.+++|.++.|..
T Consensus       129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             cCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            666543  3334455666666666666633

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=7.5e-07  Score=55.96  Aligned_cols=37  Identities=43%  Similarity=0.653  Sum_probs=17.2

Q ss_pred             cccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCc
Q 007962          499 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA  535 (583)
Q Consensus       499 ~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~  535 (583)
                      +|++|++++|.++++|..+.++++|++|++++|+|+.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence            3444555555555444444455555555555554443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.26  E-value=3.2e-07  Score=81.18  Aligned_cols=200  Identities=20%  Similarity=0.198  Sum_probs=128.5

Q ss_pred             CCCcEEEcCCCCCcccch--hh-hCCCCccEEEccCCcccc---CCccccccCcccEEEcCCCcCCcCCccc-ccCCCCC
Q 007962           68 PLLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIMK---IPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLS  140 (583)
Q Consensus        68 ~~L~~L~L~~~~l~~l~~--~~-~~~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~  140 (583)
                      ..++.+-+.++.|....+  .| ..+.+++.+||.+|.++.   +...+.++|.|++|+++.|++......+ .-..+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            345566677777775533  33 467899999999998884   4445778999999999999887544444 3567899


Q ss_pred             EEEccccccC--CCCcccccCCCCcEEEecCCcce--eechhhhccc-ccCcEEEcCCCcCCcc---chhhcCCccccEE
Q 007962          141 DFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASW-TMLTELIASKNLLNGM---PETIGSLSRLIRL  212 (583)
Q Consensus       141 ~L~l~~~~~~--~l~~~l~~l~~L~~L~l~~~~i~--~~~~~~~~~~-~~L~~L~l~~~~~~~~---~~~l~~~~~L~~L  212 (583)
                      +|.+.++.+.  .....+..++.+++|.++.|...  .++....... +.++.+++..|.....   -.--.-++++..+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            9999888665  45556777888888888887543  2222222222 3566666666644211   1111235677777


Q ss_pred             EccCCcCccc--CCCCcCCCCCcEEEcCCCCCccC--chhhhCCCCCCEEEccCCcccc
Q 007962          213 DLHQNRILSI--PSSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKE  267 (583)
Q Consensus       213 ~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~l~~  267 (583)
                      -+..|.+...  ......++.+.-|+++.+.+...  .+.+..++.|..|.++++.+.+
T Consensus       205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            7777766533  23455566666777777776633  3456677777777777776653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.24  E-value=2.4e-06  Score=69.94  Aligned_cols=120  Identities=18%  Similarity=0.326  Sum_probs=47.5

Q ss_pred             hhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcc
Q 007962          422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQL  500 (583)
Q Consensus       422 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L  500 (583)
                      +|.++++|+.+.+.. .+..+...+|.++++|+.+++.++ +......+|..+++++.+.+.+ .+..++.. +..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            455555666666553 455555555666666666666553 4444455555655566666654 33333222 2235666


Q ss_pred             cEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCcccccccc
Q 007962          501 RILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSL  547 (583)
Q Consensus       501 ~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L  547 (583)
                      +.+++..+ ++.++. .+.++ .|+.+.+.+ .++.++...+..+++|
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            66666543 444432 24454 666666655 4555555555544444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.24  E-value=2.9e-07  Score=80.36  Aligned_cols=193  Identities=21%  Similarity=0.246  Sum_probs=98.6

Q ss_pred             hhCCCCCCcEEEcCCCCCcc-----cchhhhCCCCccEEEccCCccc----cCCc-------cccccCcccEEEcCCCcC
Q 007962           63 DLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM----KIPD-------EIGSATALVKFDCSSNQL  126 (583)
Q Consensus        63 ~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~~~L~~L~L~~~~l~----~l~~-------~~~~l~~L~~L~l~~~~~  126 (583)
                      .+.-+..+..++||+|.+.+     +...+.+-.+|+..++++-..+    .++.       .+-+||+|+..++|.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            34457888899999998772     3446667778888888764322    2222       234555555555555554


Q ss_pred             C-cCC----cccccCCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc
Q 007962          127 K-ELP----SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (583)
Q Consensus       127 ~-~~~----~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (583)
                      . +.|    +.+++.+.|.+|.+++|.+..+... +++  .|.+|-         ...-....|.|+.+....|++...+
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la---------~nKKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA---------YNKKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH---------HHhhhccCCCceEEEeccchhccCc
Confidence            4 222    1233444455555555444322100 000  000000         0000223455666666666665443


Q ss_pred             h-----hhcCCccccEEEccCCcCc--cc----CCCCcCCCCCcEEEcCCCCCcc-----CchhhhCCCCCCEEEccCCc
Q 007962          201 E-----TIGSLSRLIRLDLHQNRIL--SI----PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQ  264 (583)
Q Consensus       201 ~-----~l~~~~~L~~L~l~~~~~~--~~----~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~  264 (583)
                      .     .+..-.+|+.+.+..|.+.  ++    ...+..+.+|+.|++++|.++.     +...+...+.|+.|.+.+|-
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            2     1223346666666666655  11    1234556677777777766662     22334455566777776665


Q ss_pred             cc
Q 007962          265 LK  266 (583)
Q Consensus       265 l~  266 (583)
                      ++
T Consensus       254 ls  255 (388)
T COG5238         254 LS  255 (388)
T ss_pred             hc
Confidence            54

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.21  E-value=3.2e-06  Score=80.66  Aligned_cols=133  Identities=20%  Similarity=0.363  Sum_probs=79.7

Q ss_pred             HHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCC-CcchhhhHhhCCCCCCcEEEcCCC-CCcc
Q 007962            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIEKLKEDLRNLPLLTVLNVSHN-KLSE   82 (583)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~-~~i~~l~~~~~~~~~L~~L~L~~~-~l~~   82 (583)
                      ++.++.++.|+++++.++.+| .+               ..+|+.|++++ +.++.+|+.+.  ++|++|++++| .+..
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP-~L---------------P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~s  109 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP-VL---------------PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISG  109 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC-CC---------------CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccc
Confidence            445677777777777777777 23               23577777765 34555555442  46777777776 5555


Q ss_pred             cchhhhCCCCccEEEccCCccc---cCCccccccCcccEEEcCCCcCC---cCCcccccCCCCCEEEccccccCCCCccc
Q 007962           83 LPAAIGELHMLKSLDVSFNSIM---KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNNCITSLPEDL  156 (583)
Q Consensus        83 l~~~~~~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~l~~~l  156 (583)
                      +|.      .|+.|++..+...   .+|.      +|+.|.+.++...   .++.  .-.++|++|++++|....+|..+
T Consensus       110 LP~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~L  175 (426)
T PRK15386        110 LPE------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKL  175 (426)
T ss_pred             ccc------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCcccc
Confidence            543      4666666654432   3333      3556665432211   1111  12258999999998876666554


Q ss_pred             ccCCCCcEEEecCCc
Q 007962          157 ADCSKMSKLDVEGNK  171 (583)
Q Consensus       157 ~~l~~L~~L~l~~~~  171 (583)
                      .  .+|+.|.++.+.
T Consensus       176 P--~SLk~L~ls~n~  188 (426)
T PRK15386        176 P--ESLQSITLHIEQ  188 (426)
T ss_pred             c--ccCcEEEecccc
Confidence            4  689999987653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.21  E-value=2.8e-06  Score=71.13  Aligned_cols=102  Identities=21%  Similarity=0.289  Sum_probs=45.6

Q ss_pred             cEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccc-cCcccEEEcCCCcC
Q 007962           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQL  126 (583)
Q Consensus        48 ~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~-l~~L~~L~l~~~~~  126 (583)
                      +.++|++.++..+...=.-......+||++|.+..+ ..|..++.|..|.+.+|+++.+...+.. +++|+.|.+.+|.+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            445555554443322001122334455555554433 2344555555555555555544443332 34455555555544


Q ss_pred             CcCC--cccccCCCCCEEEccccccC
Q 007962          127 KELP--SSLGRCLNLSDFKASNNCIT  150 (583)
Q Consensus       127 ~~~~--~~~~~~~~L~~L~l~~~~~~  150 (583)
                      ..+.  .-+..||+|++|.+-+|.+.
T Consensus       101 ~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen  101 QELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             hhhhhcchhccCCccceeeecCCchh
Confidence            4332  22344455555555554444

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.18  E-value=9.4e-06  Score=77.55  Aligned_cols=154  Identities=18%  Similarity=0.234  Sum_probs=100.2

Q ss_pred             hhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCC-CCCCCChhhhhcCCCCcEEecCCC-CCccCCCCccCCCCcc
Q 007962          376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPML  453 (583)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L  453 (583)
                      +..+..++.|++++|.++.+|.   -..+|++|.+++| .++..+. .+  .++|++|++++| .+..++       ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP-------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP-------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc-------ccc
Confidence            3446789999999999998883   2347999999986 4444443 22  368999999998 444332       468


Q ss_pred             cEEeCCCCccCCCCCCCCCCC-CccceEeccccc-cc--ccccchhcc-CcccEEeCCCCcCCccchhhcCCCCCCEEeC
Q 007962          454 QILDLSYNIASLPENPPFSSL-PHLQELYLRRMQ-LR--EAPTDILRL-QQLRILDLSQNSLQSIPEGFKNLTSLTELDL  528 (583)
Q Consensus       454 ~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~-l~--~~~~~~~~~-~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l  528 (583)
                      +.|+++++....     +..+ ++|+.|.+.+++ ..  .++.   .+ ++|++|++++|....+|..+.  .+|+.|++
T Consensus       115 e~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCcc-----cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcccCccccc--ccCcEEEe
Confidence            888887654432     3334 478888886543 21  1111   12 589999999998777776554  69999999


Q ss_pred             CCCCCC--cCCCCccccccccceeeccCC
Q 007962          529 SDNNIS--ALPPELGLLEPSLQALRLDGN  555 (583)
Q Consensus       529 ~~~~l~--~~~~~~~~~~~~L~~L~l~~~  555 (583)
                      +.+...  .++...  .++++ .|++.+|
T Consensus       185 s~n~~~sLeI~~~s--LP~nl-~L~f~n~  210 (426)
T PRK15386        185 HIEQKTTWNISFEG--FPDGL-DIDLQNS  210 (426)
T ss_pred             cccccccccCcccc--ccccc-Eechhhh
Confidence            876322  223222  22445 6666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.07  E-value=1.1e-05  Score=66.09  Aligned_cols=121  Identities=18%  Similarity=0.354  Sum_probs=55.1

Q ss_pred             cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCcc
Q 007962          398 ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (583)
Q Consensus       398 ~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  477 (583)
                      .+..+.+|+.+.+.. .+..+....|.++++|+.+.+.++ +..++..+|.++++|+.+.+.+ .+......+|..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            455666666666653 455555566666767777777653 6666666677776677777754 4444444556667777


Q ss_pred             ceEecccccccccccch-hccCcccEEeCCCCcCCccc-hhhcCCCCCC
Q 007962          478 QELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIP-EGFKNLTSLT  524 (583)
Q Consensus       478 ~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~  524 (583)
                      +.+.+..+ +..++... .++ .|+.+.+.. .++.++ ..|.++++|+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            77777554 44443333 344 777777765 444443 3366666654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.06  E-value=1.5e-06  Score=90.36  Aligned_cols=108  Identities=29%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             cCCCCcEEecCCCCCccCC-CCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccc--cccchhccCccc
Q 007962          425 SLSSLSCLKLDNNPLRQVP-SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE--APTDILRLQQLR  501 (583)
Q Consensus       425 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~L~  501 (583)
                      .+|+|+.|.+++-.+..-. .....++|+|..||+|++.++..  ..++.+++|+.|.+.+-.+..  --.+++++++|+
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            3455555555543332111 01134455555555555555544  235556666666665555542  123456677777


Q ss_pred             EEeCCCCcCCcc-------chhhcCCCCCCEEeCCCCCCC
Q 007962          502 ILDLSQNSLQSI-------PEGFKNLTSLTELDLSDNNIS  534 (583)
Q Consensus       502 ~L~l~~n~l~~l-------~~~l~~~~~L~~L~l~~~~l~  534 (583)
                      .||+|.......       -++-..+|.|+.||.+|+.+.
T Consensus       224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            777776643311       122344677777777777665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.03  E-value=5.6e-06  Score=86.15  Aligned_cols=82  Identities=18%  Similarity=0.238  Sum_probs=42.6

Q ss_pred             ccCccEEEcCCCcch--hhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCcccc--CCccccccCcccEE
Q 007962           44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKF  119 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L  119 (583)
                      +|.|+.|.+++-.+.  ++...++++|+|+.||+|+++++.+ ..++++++|+.|.+.+=.+..  -...+..+++|++|
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL  225 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL  225 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence            455666665554333  2333455566666666666665555 455556666666555544431  11234455555666


Q ss_pred             EcCCCcC
Q 007962          120 DCSSNQL  126 (583)
Q Consensus       120 ~l~~~~~  126 (583)
                      |+|....
T Consensus       226 DIS~~~~  232 (699)
T KOG3665|consen  226 DISRDKN  232 (699)
T ss_pred             ecccccc
Confidence            5555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.02  E-value=9.9e-06  Score=67.90  Aligned_cols=127  Identities=24%  Similarity=0.273  Sum_probs=75.2

Q ss_pred             ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      =+++++.+.++..+...=.-..+...+|+++|.+.....  |..++.|..|.+.+|+|+.+...--.-+++|..|.+.+|
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            345666665544322211122456677777777665544  566777777777777777776654444567777777777


Q ss_pred             ccCCCC-CCCCCCCCccceEecccccccccc----cchhccCcccEEeCCCCcC
Q 007962          462 IASLPE-NPPFSSLPHLQELYLRRMQLREAP----TDILRLQQLRILDLSQNSL  510 (583)
Q Consensus       462 ~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~----~~~~~~~~L~~L~l~~n~l  510 (583)
                      ++..++ ...+..||+|++|.+-+|..+.-.    ..+..+|+|++||+.+-..
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            665432 223566677777777777665221    2344566777777666543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.51  E-value=4.3e-05  Score=67.13  Aligned_cols=105  Identities=28%  Similarity=0.301  Sum_probs=58.8

Q ss_pred             cCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC--ccCCCCCCCCCCCCccceEeccccccccc--ccchhccCcc
Q 007962          425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREA--PTDILRLQQL  500 (583)
Q Consensus       425 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~~~~L  500 (583)
                      ....|+.+.+.++.++.+..  |..+++|++|.+++|  ++..........+|+|+++++++|++..+  ...+..+.+|
T Consensus        41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            34455555555555554432  566677777777777  44333222334457777777777766632  1234456667


Q ss_pred             cEEeCCCCcCCccc----hhhcCCCCCCEEeCCCC
Q 007962          501 RILDLSQNSLQSIP----EGFKNLTSLTELDLSDN  531 (583)
Q Consensus       501 ~~L~l~~n~l~~l~----~~l~~~~~L~~L~l~~~  531 (583)
                      .+|++.+|..+.+.    ..|.-+++|++|+-...
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            77777777555331    22455666666654443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=1.6e-05  Score=70.08  Aligned_cols=97  Identities=25%  Similarity=0.256  Sum_probs=55.8

Q ss_pred             cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCc--cccccCcccEEEcC
Q 007962           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCS  122 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~l~  122 (583)
                      .++++|++-+|.+.+|. ...+|+.|++|.||-|.|+++ ..+..|.+|+.|.|..|.|..+.+  -+.++++|+.|.+.
T Consensus        19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            45566666666666552 455666666666666666655 445666666666666666654432  24566677777776


Q ss_pred             CCcCC-cCC-----cccccCCCCCEEE
Q 007962          123 SNQLK-ELP-----SSLGRCLNLSDFK  143 (583)
Q Consensus       123 ~~~~~-~~~-----~~~~~~~~L~~L~  143 (583)
                      .|+.. .-+     ..+..+|+|+.|+
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            66533 111     1344555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.13  E-value=0.00019  Score=63.23  Aligned_cols=84  Identities=25%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             CCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCC--ccc-cCCccccccCcccEEEcCCCcCCcCC--cccccCCCC
Q 007962           65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNL  139 (583)
Q Consensus        65 ~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~--~l~-~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L  139 (583)
                      ..+..|+.+.+.+..++++ ..+..+++|++|.++.|  +.. .++.....+++|+++++++|++..+.  .-+..+.+|
T Consensus        40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            3344455555555555444 34455566666666666  322 34334444566666666666554321  223344444


Q ss_pred             CEEEcccccc
Q 007962          140 SDFKASNNCI  149 (583)
Q Consensus       140 ~~L~l~~~~~  149 (583)
                      ..|++..|..
T Consensus       119 ~~Ldl~n~~~  128 (260)
T KOG2739|consen  119 KSLDLFNCSV  128 (260)
T ss_pred             hhhhcccCCc
Confidence            4555544433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=1.9e-05  Score=69.53  Aligned_cols=98  Identities=23%  Similarity=0.209  Sum_probs=60.6

Q ss_pred             CcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh--hcCCCCCCEEeC
Q 007962          451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--FKNLTSLTELDL  528 (583)
Q Consensus       451 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~--l~~~~~L~~L~l  528 (583)
                      .+.+.|++.+|.++++..  +..+|.|+.|.|+=|.|+++ ..+..|+.|+.|++..|.|.++.+.  +.++++|+.|-|
T Consensus        19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            455667777777666543  45667777777777777766 4566777777777777777665433  567777777777


Q ss_pred             CCCCCC-cCCCC----ccccccccceee
Q 007962          529 SDNNIS-ALPPE----LGLLEPSLQALR  551 (583)
Q Consensus       529 ~~~~l~-~~~~~----~~~~~~~L~~L~  551 (583)
                      ..|.=. ..+++    ....+|+|++||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            766333 22222    122236666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.77  E-value=8.2e-05  Score=76.57  Aligned_cols=183  Identities=27%  Similarity=0.198  Sum_probs=82.5

Q ss_pred             ccccceeecCCCCCcc---CChhhhccCCccEEEcCCC-C-CCcC----CccccCCCCCcEEEccCCC-CCCCChhhhhc
Q 007962          356 SVTSKELSLEGMNLSA---IPSEIWEAGEITKLDLSRN-S-IQEL----PPELSSCASLQTLILSRNK-IKDWPDAILTS  425 (583)
Q Consensus       356 ~~~l~~l~l~~~~~~~---~~~~~~~~~~L~~L~l~~~-~-l~~l----~~~l~~~~~L~~L~l~~~~-l~~~~~~~l~~  425 (583)
                      ...++.+.+.++....   +......++.|++++++++ . ....    ......+++|+.++++.+. +++.....+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            3445555555543221   3334445566666666652 1 1111    1123445666666666655 44444333332


Q ss_pred             -CCCCcEEecCCCC-CccCCCC-ccCCCCcccEEeCCCCccC-CCC-CCCCCCCCccceEecccccccccccchhccCcc
Q 007962          426 -LSSLSCLKLDNNP-LRQVPSD-GFKDIPMLQILDLSYNIAS-LPE-NPPFSSLPHLQELYLRRMQLREAPTDILRLQQL  500 (583)
Q Consensus       426 -l~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~~~-~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L  500 (583)
                       |++|+.|.+.+|. +++.... ...++++|++|+++.|... +.. ......+++++.|.+..+.         .++.+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------~c~~l  337 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------GCPSL  337 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------CCccH
Confidence             5666666655555 3332211 1244556666666655332 100 0001223444443322221         13344


Q ss_pred             cEEeCCCCcC---Ccc-chhhcCCCCCCEEeCCCCCCCcCC-CCcccccccc
Q 007962          501 RILDLSQNSL---QSI-PEGFKNLTSLTELDLSDNNISALP-PELGLLEPSL  547 (583)
Q Consensus       501 ~~L~l~~n~l---~~l-~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~L  547 (583)
                      +.+.+.++.-   ..+ ...+..++.++.+.+.++.+.... ......|+.|
T Consensus       338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            4444444322   111 123577888888888888644332 2333334444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.75  E-value=3.7e-05  Score=65.91  Aligned_cols=104  Identities=17%  Similarity=0.154  Sum_probs=77.6

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELH   91 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~   91 (583)
                      +++|++--.+..+|..-.            ...+..++||++.+++..+...|+.++.|..+|++.+.+..+|..+....
T Consensus        21 ~tc~~s~s~~s~~~v~ei------------~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~   88 (326)
T KOG0473|consen   21 ETCDLSLSELSEIPVREI------------ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQR   88 (326)
T ss_pred             cccCCCHHHhcccchhhh------------hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHH
Confidence            455555555556664322            22456788888888888877778888888888888888888888888888


Q ss_pred             CccEEEccCCccccCCccccccCcccEEEcCCCcCC
Q 007962           92 MLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK  127 (583)
Q Consensus        92 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~  127 (583)
                      .+..+++..|+.+..|.++.+.++++++++.++.+.
T Consensus        89 e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   89 ETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             HHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence            888888888888888888888888888888777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.74  E-value=0.00057  Score=70.36  Aligned_cols=191  Identities=19%  Similarity=0.169  Sum_probs=102.5

Q ss_pred             ccCccEEEcCCC--cchhh----hHhhCCCCCCcEEEcCCCC-Cccc--chhhhCCCCccEEEccCCc-cc--cCCcccc
Q 007962           44 AVDLQKLILAHN--NIEKL----KEDLRNLPLLTVLNVSHNK-LSEL--PAAIGELHMLKSLDVSFNS-IM--KIPDEIG  111 (583)
Q Consensus        44 ~~~L~~L~ls~~--~i~~l----~~~~~~~~~L~~L~L~~~~-l~~l--~~~~~~~~~L~~L~L~~~~-l~--~l~~~~~  111 (583)
                      +++|+.|+++++  .+...    ......+++|+.++++++. +++.  ......|++|++|.+.+|. ++  .+-....
T Consensus       213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~  292 (482)
T KOG1947|consen  213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE  292 (482)
T ss_pred             CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence            678888888763  22211    1245667888888888887 5532  2223348888888877775 55  3334456


Q ss_pred             ccCcccEEEcCCCcCC---cCCcccccCCCCCEEEcccccc----C--------------CCCcccccCCCCcEEEecCC
Q 007962          112 SATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNNCI----T--------------SLPEDLADCSKMSKLDVEGN  170 (583)
Q Consensus       112 ~l~~L~~L~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~~----~--------------~l~~~l~~l~~L~~L~l~~~  170 (583)
                      ++++|++|++++|...   .+.....++++++.|.+.....    +              ...-....+++++.+.+..+
T Consensus       293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~  372 (482)
T KOG1947|consen  293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYC  372 (482)
T ss_pred             hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhh
Confidence            6888888888877653   1222344566666655443321    1              00112455666666666665


Q ss_pred             cceeec-hhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccC--CCCcC-CCCCcEEEcCCCCCc
Q 007962          171 KLTVLS-NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISG-CCSLAEFYMGNNALS  243 (583)
Q Consensus       171 ~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~-~~~L~~L~l~~~~~~  243 (583)
                      ...... ...+.+++.|+ ..+...        ......++.|++..+......  ..... +..+..+.+.++...
T Consensus       373 ~~~~~~~~~~l~gc~~l~-~~l~~~--------~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  373 GISDLGLELSLRGCPNLT-ESLELR--------LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             hccCcchHHHhcCCcccc-hHHHHH--------hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            533333 23344455442 111111        111222778888887644221  11111 556666666665433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.12  E-value=0.0025  Score=33.06  Aligned_cols=19  Identities=26%  Similarity=0.398  Sum_probs=10.0

Q ss_pred             ccEEEcCCCcchhhhHhhC
Q 007962           47 LQKLILAHNNIEKLKEDLR   65 (583)
Q Consensus        47 L~~L~ls~~~i~~l~~~~~   65 (583)
                      |++||+++|+++.+|..|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.67  E-value=0.0056  Score=31.72  Aligned_cols=15  Identities=47%  Similarity=0.654  Sum_probs=5.9

Q ss_pred             ccEEEccCCccccCC
Q 007962           93 LKSLDVSFNSIMKIP  107 (583)
Q Consensus        93 L~~L~L~~~~l~~l~  107 (583)
                      |++|++++|.++.+|
T Consensus         2 L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIP   16 (22)
T ss_dssp             ESEEEETSSEESEEG
T ss_pred             ccEEECCCCcCEeCC
Confidence            334444444333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.46  E-value=0.00025  Score=70.83  Aligned_cols=180  Identities=24%  Similarity=0.254  Sum_probs=109.1

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchh-----hhHhhCCC-CCCcEEEcCCCCCc---
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLS---   81 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-----l~~~~~~~-~~L~~L~L~~~~l~---   81 (583)
                      +..+++.++.+++-+......        .+.....|..|++++|.+..     +.+.+... ..+++|++..|.++   
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence            566677777777555444322        23335667777777777762     22334443 55666777777666   


Q ss_pred             --ccchhhhCCCCccEEEccCCccc-----cCCcccc----ccCcccEEEcCCCcCCcC-----CcccccCCC-CCEEEc
Q 007962           82 --ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKEL-----PSSLGRCLN-LSDFKA  144 (583)
Q Consensus        82 --~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~-L~~L~l  144 (583)
                        .+.+.+....+++.++++.|.+.     .++..+.    ...++++|.+++|.++..     ...+...+. +..|++
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l  240 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL  240 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence              34456666777777777777653     1222333    356678888887776521     123444454 666777


Q ss_pred             cccccCC-----CCcccccC-CCCcEEEecCCcceeechh----hhcccccCcEEEcCCCcCCc
Q 007962          145 SNNCITS-----LPEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLNG  198 (583)
Q Consensus       145 ~~~~~~~-----l~~~l~~l-~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~~~  198 (583)
                      ..|.+.+     +.+.+..+ ..++++++..|.+..-...    .+..+++++.+.++.+.+..
T Consensus       241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            7776662     23344555 6778888888887743332    24556788888888887753

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.20  E-value=0.00046  Score=59.43  Aligned_cols=84  Identities=23%  Similarity=0.262  Sum_probs=40.0

Q ss_pred             hCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEE
Q 007962           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (583)
Q Consensus        64 ~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  143 (583)
                      +..+...+.||++.+++..+...|+-+..|..|+++.|.+..+|.++.+...+.+++.+.|..+..|.++...+.+++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            34444455555555544444444444444444555544444444444444444444444444444444444444444444


Q ss_pred             cccc
Q 007962          144 ASNN  147 (583)
Q Consensus       144 l~~~  147 (583)
                      ..++
T Consensus       118 ~k~~  121 (326)
T KOG0473|consen  118 QKKT  121 (326)
T ss_pred             hccC
Confidence            4444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.13  E-value=0.015  Score=27.85  Aligned_cols=9  Identities=56%  Similarity=0.774  Sum_probs=2.9

Q ss_pred             CEEeCCCCC
Q 007962          524 TELDLSDNN  532 (583)
Q Consensus       524 ~~L~l~~~~  532 (583)
                      +.|++++|+
T Consensus         4 ~~L~l~~n~   12 (17)
T PF13504_consen    4 RTLDLSNNR   12 (17)
T ss_dssp             SEEEETSS-
T ss_pred             CEEECCCCC
Confidence            333333333

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.08  E-value=0.0003  Score=70.25  Aligned_cols=175  Identities=28%  Similarity=0.340  Sum_probs=126.7

Q ss_pred             CccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCcc-----cchhhhCC-CCccEEEccCCccc-----cCCcc
Q 007962           46 DLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGEL-HMLKSLDVSFNSIM-----KIPDE  109 (583)
Q Consensus        46 ~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~-~~L~~L~L~~~~l~-----~l~~~  109 (583)
                      .+..+.|.+|.+.     .+...+...+.|+.|++++|.+..     +...+... ..|++|.+..|.++     .+...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3788889988887     344568899999999999999882     22234443 56788888888777     35556


Q ss_pred             ccccCcccEEEcCCCcCC-----cCCcccc----cCCCCCEEEccccccCC-----CCcccccCCC-CcEEEecCCccee
Q 007962          110 IGSATALVKFDCSSNQLK-----ELPSSLG----RCLNLSDFKASNNCITS-----LPEDLADCSK-MSKLDVEGNKLTV  174 (583)
Q Consensus       110 ~~~l~~L~~L~l~~~~~~-----~~~~~~~----~~~~L~~L~l~~~~~~~-----l~~~l~~l~~-L~~L~l~~~~i~~  174 (583)
                      +.....++.++++.|.+.     .++..+.    ...++++|++..|.++.     +...+...++ +.++++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            777889999999999875     2223333    47789999999998772     2234555566 7779998888775


Q ss_pred             echhh----hccc-ccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcCc
Q 007962          175 LSNNL----IASW-TMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRIL  220 (583)
Q Consensus       175 ~~~~~----~~~~-~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~  220 (583)
                      .....    +... ..+++++++.|.+..     +...+..++.++.+.+.++.+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            42221    3334 567899999998853     4456677889999999999876

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.43  E-value=0.033  Score=30.23  Aligned_cols=19  Identities=58%  Similarity=0.955  Sum_probs=8.9

Q ss_pred             CCCCEEeCCCCCCCcCCCC
Q 007962          521 TSLTELDLSDNNISALPPE  539 (583)
Q Consensus       521 ~~L~~L~l~~~~l~~~~~~  539 (583)
                      ++|++|++++|+|+.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3444444444444444443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.43  E-value=0.033  Score=30.23  Aligned_cols=19  Identities=58%  Similarity=0.955  Sum_probs=8.9

Q ss_pred             CCCCEEeCCCCCCCcCCCC
Q 007962          521 TSLTELDLSDNNISALPPE  539 (583)
Q Consensus       521 ~~L~~L~l~~~~l~~~~~~  539 (583)
                      ++|++|++++|+|+.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            3444444444444444443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.20  E-value=0.0052  Score=52.08  Aligned_cols=78  Identities=19%  Similarity=0.150  Sum_probs=35.8

Q ss_pred             ccEEeCCCCccCCCCCCCCCCCCccceEecccc-ccccc-ccch-hccCcccEEeCCCC-cCCc-cchhhcCCCCCCEEe
Q 007962          453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRM-QLREA-PTDI-LRLQQLRILDLSQN-SLQS-IPEGFKNLTSLTELD  527 (583)
Q Consensus       453 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~-~~~~~L~~L~l~~n-~l~~-l~~~l~~~~~L~~L~  527 (583)
                      ++.+|-+++.+...+.+.+..+++++.|.+.+| .+... ...+ .-.++|+.|++++| ++++ --.++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            444555555554444444555555555555555 22210 0000 12355555555555 3441 113455555555555


Q ss_pred             CCC
Q 007962          528 LSD  530 (583)
Q Consensus       528 l~~  530 (583)
                      +.+
T Consensus       183 l~~  185 (221)
T KOG3864|consen  183 LYD  185 (221)
T ss_pred             hcC
Confidence            554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.44  E-value=0.11  Score=28.13  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             cccceeeccCCCCccchhHHhc
Q 007962          545 PSLQALRLDGNPLRSIRRTILD  566 (583)
Q Consensus       545 ~~L~~L~l~~~~~~~~~~~~~~  566 (583)
                      ++|+.|++++|.++.++..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            6899999999999999998885

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.44  E-value=0.11  Score=28.13  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             cccceeeccCCCCccchhHHhc
Q 007962          545 PSLQALRLDGNPLRSIRRTILD  566 (583)
Q Consensus       545 ~~L~~L~l~~~~~~~~~~~~~~  566 (583)
                      ++|+.|++++|.++.++..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            6899999999999999998885

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.17  E-value=0.012  Score=50.05  Aligned_cols=82  Identities=23%  Similarity=0.089  Sum_probs=44.3

Q ss_pred             CCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC-Ccc-CCCCcccEEeCCCC-ccCCCCCCCCCCCCccce
Q 007962          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQE  479 (583)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~  479 (583)
                      ..++.+|-+++.+.......+.+++.++.+.+.+|.-.+.-. +.+ ...++|+.|++++| .|++.+...+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            346777777777777777777777778877777765332100 001 12345555555544 344444334444444444


Q ss_pred             Eeccc
Q 007962          480 LYLRR  484 (583)
Q Consensus       480 L~l~~  484 (583)
                      |.+.+
T Consensus       181 L~l~~  185 (221)
T KOG3864|consen  181 LHLYD  185 (221)
T ss_pred             HHhcC
Confidence            44433

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.25  E-value=0.28  Score=25.85  Aligned_cols=19  Identities=26%  Similarity=0.480  Sum_probs=11.1

Q ss_pred             cccceeeccCCCCccchhH
Q 007962          545 PSLQALRLDGNPLRSIRRT  563 (583)
Q Consensus       545 ~~L~~L~l~~~~~~~~~~~  563 (583)
                      ++|+.|++++|+|+.....
T Consensus         2 ~~L~~L~l~~n~i~~~g~~   20 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGAS   20 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHH
Confidence            5677777777776654443

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.97  E-value=0.81  Score=24.61  Aligned_cols=18  Identities=44%  Similarity=0.803  Sum_probs=12.2

Q ss_pred             CCCCEEeCCCCCCCcCCC
Q 007962          521 TSLTELDLSDNNISALPP  538 (583)
Q Consensus       521 ~~L~~L~l~~~~l~~~~~  538 (583)
                      ++|++|++++|+++.+|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            356677777777776665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.12  E-value=1.6  Score=23.61  Aligned_cols=16  Identities=56%  Similarity=0.787  Sum_probs=9.1

Q ss_pred             CCCCEEeCCCCCCCcC
Q 007962          521 TSLTELDLSDNNISAL  536 (583)
Q Consensus       521 ~~L~~L~l~~~~l~~~  536 (583)
                      ++|+.|++++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4556666666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	583
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-09
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-06
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		2e-08
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-06
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		1e-06
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		2e-06
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		4e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		9e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		2e-04
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		8e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-04
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		6e-04
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		2e-05
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		3e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		4e-05
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		4e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		4e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		4e-05
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		6e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-05
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		8e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		8e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		9e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-04
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-04
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		1e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-04
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		3e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		3e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		4e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		5e-04
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		5e-04
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		6e-04
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		6e-04
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		6e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		7e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           LD+   ++  +S N I  +  LT L  + N L  +P  I +LS L  LDL  NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  C  L  FY  +N ++ LP E G L  L  L +  N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 10/203 (4%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 392
           N  +    + + L  + + +   +K+L L+   LS++PS+ +    +TKL L   + N +
Sbjct: 16  NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 393 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 451
           Q LP  +     +L+TL ++ NK++  P  +            D N L+ +P   F  + 
Sbjct: 74  QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 452 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXX-XXXXXXXXSQNS 509
            L  L L YN + SLP+   F  L  L+EL L   QL+  P                 N 
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 510 LQSIPEG-FKNLTSLTELDLSDN 531
           L+ +PEG F +L  L  L L +N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAIXXXXX 427
           L+AIPS I    +  KLDL  N +  LP +       L+ L L+ NK++  P  I     
Sbjct: 28  LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI----- 80
Query: 428 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
                              FK++  L+ L ++ N + +LP    F  L +L EL L R Q
Sbjct: 81  -------------------FKELKNLETLWVTDNKLQALPIGV-FDQLVNLAELRLDRNQ 120
Query: 487 LRE-APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXX 544
           L+   P                N LQS+P+G F  LTSL EL L +N +           
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 545 XXXQALRLDGNPLRSIRRTILD 566
              + L+LD N L+ +     D
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFD 202

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 116/232 (50%), Gaps = 12/232 (5%)
Query: 46  DLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           D   L L +N+I +L K+D + L  L  L + +NK+S++   A   L  L+ L +S N +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCI--TSLPEDLADCS 160
           ++IP  + S+  LV+     N+++++P  +   L N++  +   N +  +       D  
Sbjct: 115 VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRI 219
           K++ L +   KLT +  +L  +   L EL    N +  +  E +   S+L RL L  N+I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 220 LSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             I   S+S   +L E ++ NN LS +PA L  L  L  + LH+N + +  V
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDLSYN + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           ++L L                        QN L+S+P+G F  LTSL  + L DN
Sbjct: 184 KDLRLY-----------------------QNQLKSVPDGVFDRLTSLQYIWLHDN 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXX 504
             K++  L  L L+ N + SLP N  F  L +L+EL L   QL+  P             
Sbjct: 80  ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 505 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 562
             + N LQS+P+G F  LT+LTELDLS N + +            + LRL  N L+S+  
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 563 TILDRGTKAVLKYLKD 578
            + DR T     +L D
Sbjct: 199 GVFDRLTSLQYIWLHD 214

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L++ +NN++ L  DL   PLL  L VS+N+L +LP  +     LK +DV  NS+ K+
Sbjct: 113 LKSLLVDNNNLKALS-DLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL 168
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
           PD   S   +      +NQL+ELP  L     L+   A NN +  LP DL        L 
Sbjct: 169 PDLPPSLEFIA---AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DLP-------LS 216
Query: 167 VEGNKLTVLSNNL------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220
           +E     V  NN+      + +   LT + A  NLL  +P+   SL  L   D +   + 
Sbjct: 217 LES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273
Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            +P S++        + G   LS LP        L  L+  SN+++  C
Sbjct: 274 ELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEIRSLC 313

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L+VS N+L+ LPA   EL  L + +    S+  +P      + L +   S NQL 
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA 194
Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   A  S + +L V GN+LT L            
Sbjct: 195 SLPTLPS---ELYKLWAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV---------- 238
Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
                      +P      S L  L +  NR+ S+P   SG  SL+ +    N L+ LP 
Sbjct: 239 -----------LP------SELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPE 278
Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQ 274
            L  LS   T++L  N L E  ++A +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           + P E      +V+  CS+  LK LP  + R  ++++     N  T +P++L++   ++ 
Sbjct: 3   RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           +D+  N+++ LSN   ++ T L  LI S N L  + P T   L  L  L LH N I  +P
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 224 -SSISGCCSLAEFYMGNNAL 242
             + +   +L+   +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 27/198 (13%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS--SN 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 125 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 175
Query: 125 QLKELPSS---------LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           +LK L  S         + RC+NL     S+N  ++    L DCS +  LD+ GNKL+  
Sbjct: 176 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 235
Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SLA 233
            +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L 
Sbjct: 236 FSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 234 EFYM-GNNALSALPAELG 250
              + GN+   A+P   G
Sbjct: 295 GLDLSGNHFYGAVPPFFG 312

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 92/199 (46%), Gaps = 29/199 (14%)
Query: 70  LTVLNVSHNKLSELPAAIG---ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS--SN 124
           L  LNVS N L + P  +    +L+ L+ LD+S NSI        S   +V +  S    
Sbjct: 128 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSI--------SGANVVGWVLSDGCG 178
Query: 125 QLKELPSS---------LGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           +LK L  S         + RC+NL     +SNN  T +P  L DCS +  LD+ GNKL+ 
Sbjct: 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC-SL 232
             +  I++ T L  L  S N   G P     L  L  L L +N+    IP  +SG C +L
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 233 AEFYM-GNNALSALPAELG 250
               + GN+   A+P   G
Sbjct: 297 TGLDLSGNHFYGAVPPFFG 315

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
           L + + ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L  L L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           + N++ S+P  +     +L    + NN L +LP     KL++L  L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 418
           + L+L G  L  I S + E   +T L L+ N +Q LP        +L+ L+L  N+++  
Sbjct: 66  RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 419 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +             +N L+ +P   F  +  L  LDL  N + SLPE   F  L  L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 478 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           ++L L                       + N L+S+P+G F  LTSLT + L +N
Sbjct: 184 KQLSL-----------------------NDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXX 504
             K++  L  L L+ N + SLP N  F  L +L+EL L   QL+  P             
Sbjct: 80  ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 505 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 562
               N LQS+P+G F  LT+LT LDL +N + +            + L L+ N L+S+  
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 563 TILDRGT 569
            + DR T
Sbjct: 199 GVFDRLT 205

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199
           ++ + ++  +TS+P  +   S  ++L++E NKL  L + +    T LT+L  S+N +  +
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 200 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 256
           P+ +   L++L  L LH+N++ S+P+ +      L E  +  N L ++P     +L+ L 
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 257 TLDLHSNQLKEYC 269
            + LH+N     C
Sbjct: 128 KIWLHTNPWDCSC 140

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
           +E     + L ++ T +  ++  L LE   L ++P  +++   ++TKL LS+N IQ LP 
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 398 E-LSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 456
                   L  L L  NK++  P+ +            D N L+ VP   F  +  LQ +
Sbjct: 70  GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 457 DLSYN 461
            L  N
Sbjct: 130 WLHTN 134

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 101/233 (43%), Gaps = 22/233 (9%)
Query: 41  WWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSL 96
           +  A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L
Sbjct: 95  FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTL 152
Query: 97  DVSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
            +S N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   
Sbjct: 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLST 206
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLD 213
           LA    + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +D
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVD 260
Query: 214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L  N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 208
           TS+P  +   ++ + LD+E N L  L N +    T LT+L    N L  +P  +   L+ 
Sbjct: 20  TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           L  L+L  N++ S+P+ +      L E  +  N L +LP     KL++L  L L+ NQLK
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXX-SQNSLQSI 513
           LDL  N + SLP N  F  L  L +LYL   +L+  P               S N LQS+
Sbjct: 33  LDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 514 PEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAV 572
           P G F  LT L EL L+ N + +            + LRL  N L+S+   + DR T   
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 573 LKYLKD 578
             +L D
Sbjct: 152 YIWLHD 157

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 429
           +A PS+   +G  T +D        +P  + + A  Q L L  N+I      +       
Sbjct: 11  AACPSQCSCSG--TTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINL 66
Query: 430 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489
                 +N L  +P   F  +  L +LDL  N  ++  +  F  L HL+EL++   +L E
Sbjct: 67  KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 490 APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            P               QN L+SIP G F  L+SLT   L  N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 147/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 149
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 203
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 217 NRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 403
           + L  + T L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      
Sbjct: 21  KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 404 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 463
           SL +L+L  NKI + P ++            + N +  +  D F+D+  L +L L  N  
Sbjct: 81  SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 464 SLPENPPFSSLPHLQELYL 482
                  FS L  +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  S NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 340

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 54/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLAN 171
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 172 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 229
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 230 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 260
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 261 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 307
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 308 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 28/185 (15%)
Query: 385 LDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 443
           L LSRN I+ +     +  A+L TL L  N++   P+               NNP+  +P
Sbjct: 93  LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 444 SDGFKDIPMLQILDLS--YNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXX 501
           S  F  IP L+ LDL     ++ + E   F  L +L+ L L    LRE P          
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIP---------- 201
Query: 502 XXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIR 561
                             L  L ELDLS N++SA            Q L +  + ++ I 
Sbjct: 202 --------------NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 562 RTILD 566
           R   D
Sbjct: 248 RNAFD 252

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 378 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 436
           EA  +   DLS++ I  L     S    L+ L L++N+I    D                
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
           N L  + S  F+++  L++LDLSYN      +  F  LP+L+EL L   QL+  P
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  L P  L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 33/275 (12%)
Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE 394
           N+ S+   T+  L  +   +   ++ L+L   N+  I ++ +     +  L L RNSI++
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 395 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 453
           +     +  ASL TL L  N +   P                NNP+  +PS  F  +P L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 454 QILDLS----------------YNI-------ASLPENPPFSSLPHLQELYLRRMQLREA 490
             LDL                 +N+        ++ + P  + L  L+EL +      E 
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 491 PTXXXXXXXXXXXXXSQNSLQSIPE--GFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQ 548
                            NS  S+ E   F  L SL EL+L+ NN+S+             
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Query: 549 ALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 583
            L L  NP         D     +  +L++ IP N
Sbjct: 294 ELHLHHNPWNC------DCDILWLAWWLREYIPTN 322

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 58  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 117 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 154
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 155 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 62  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 119
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 120 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 174
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 175 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 232
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 233 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 263
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 264 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 310
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L  + NK+ D
Sbjct: 311 TYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD 344

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 63  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 120
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 121 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 176 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 233
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 234 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 264
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 265 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 311
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 312 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 345

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 144/335 (42%), Gaps = 55/335 (16%)
Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
            +  L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     
Sbjct: 58  GVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLF 115
Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
           NN IT + + L + + +++L++  N ++ +S   ++  T L +L     + +  P  + +
Sbjct: 116 NNQITDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFGNQVTDLKP--LAN 170
Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L+ L RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQL
Sbjct: 171 LTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQL 228
Query: 266 KEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
           K+    A                        +T L  L L  N +  L       P   L
Sbjct: 229 KDIGTLAS-----------------------LTNLTDLDLANNQISNL------APLSGL 259
Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEAGEI 382
            K    +L  N+ S  S        +A   ++T+ EL+   LE +      S I     +
Sbjct: 260 TKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNLKNL 306
Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           T L L  N+I ++ P +SS   LQ L    NK+ D
Sbjct: 307 TYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 340

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 535
                                + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 130 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 17  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 535
                                + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 130 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 41  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 98
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL    
Sbjct: 99  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 153
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 535
                                + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 154 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 51/190 (26%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 94  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL------------------ 135
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 136 ------QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 184
Query: 488 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXX 546
                              QN +  + P  F++L  L  L L  NN+SA           
Sbjct: 185 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 547 XQALRLDGNP 556
            Q LRL+ NP
Sbjct: 226 LQYLRLNDNP 235

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 425
           +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D     
Sbjct: 19  LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 426 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                      NP++ +    F  +  LQ ++ L  N+ASL EN P   L  L+EL +  
Sbjct: 77  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 485 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 535
                                + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 134 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 30/175 (17%)
Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIX 423
           E +N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D   
Sbjct: 16  EELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 73
Query: 424 XXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYL 482
                        NP++ +    F  +  LQ ++ +  N+ASL EN P   L  L+EL +
Sbjct: 74  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV 132
Query: 483 RRMQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 535
                                  + N +QS  +PE F NLT+L  LDLS N I +
Sbjct: 133 -----------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 51/190 (26%)
Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 428
           S  P+     G +  L L R  +QEL P L    A+LQ L L                  
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 137
Query: 429 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
                  +N L+ +P D F+D+  L  L L  N I+S+PE   F  L  L  L L     
Sbjct: 138 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 185
Query: 488 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXX 546
                              QN +  + P  F++L  L  L L  NN+SA           
Sbjct: 186 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 547 XQALRLDGNP 556
            Q LRL+ NP
Sbjct: 227 LQYLRLNDNP 236

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	583
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-72
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-65
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-65
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-48
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-57
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-56
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-54
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-32
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-48
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-50
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-49
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-41
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-40
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-48
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-48
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-27
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-22
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-41
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-38
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-37
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-22
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-45
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-39
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-40
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-41
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-36
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-40
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-36
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-35
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-40
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-36
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-38
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-39
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-39
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-36
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-38
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-34
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-24
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-35
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-33
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-32
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-23
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-25
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-23
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-35
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-33
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-27
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-21
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-34
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-34
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-32
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-23
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-26
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-21
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-17
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-16
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-26
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-23
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-16
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-23
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-25
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-23
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-24
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-23
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-20
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-21
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-24
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-22
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-17
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-21
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-19
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-19
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-18
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-18
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-18
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-12
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-16
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-10
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	7e-04

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  240 bits (615), Expect = 7e-72
 Identities = 103/582 (17%), Positives = 194/582 (33%), Gaps = 64/582 (10%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +    ++ L  VP+++  +                + + L+ N ++ L      N  
Sbjct: 12  PNITYQCMDQKLSKVPDDIPSS---------------TKNIDLSFNPLKILKSYSFSNFS 56

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQL 126
            L  L++S  ++  +   A   LH L +L ++ N I           T+L        +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 127 KELPS-SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L S  +G+ + L     ++N I S   P   ++ + +  +D+  N +  ++ N +   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAE--- 234
                    L  S N ++ + +      +L  L L  N   S  + + +     L     
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 235 ---FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDLSNNS 286
               +     L       +  L  +   +       ++  +     C   +S + L+  S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +  L   + K    + L +    L+   +  L        LK L   + +   S      
Sbjct: 297 IKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPF------LKSLTLTMNKGSISFKKVAL 349

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK---LDLSRNSIQELPPELSSC 402
             L             L L    LS      +          LDLS N    +       
Sbjct: 350 PSL-----------SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 403 ASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             LQ L    + +K     +   SL  L  L +     +      F  +  L  L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 518
                  +  F++  +L  L L + QL +    +   L +L++L++S N+L  +    + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
            L SL+ LD S N I      L     SL    L  N +  I
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACI 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (490), Expect = 5e-54
 Identities = 102/516 (19%), Positives = 180/516 (34%), Gaps = 55/516 (10%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
                   KLS++P  I      K++D+SFN +  +                        
Sbjct: 14  ITYQCMDQKLSKVPDDIPSS--TKNIDLSFNPLKILK----------------------S 49

Query: 131 SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
            S      L     S   I ++ +        +S L + GN +   S    +  T L  L
Sbjct: 50  YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 190 IASKNLLNGMPE-TIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALP 246
           +A +  L  +    IG L  L +L++  N I    +P+  S   +L    +  N +  + 
Sbjct: 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169

Query: 247 AEL-----GKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE--IGKMT 298
                          +LD+  N +     +A Q ++L  L L  N  S    +  +  + 
Sbjct: 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 299 TLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
            L    L     +  R+  +        L  +         +   +           +  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV-- 287

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
               +SL G+++  +   + +  +   L + R  +++ P        L++L L+ NK   
Sbjct: 288 --SAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKGSI 342

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI--PMLQILDLSYN-IASLPENPPFSSL 474
                  +L SLS L L  N L       + D+    L+ LDLS+N    +  N  F  L
Sbjct: 343 SFK--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN--FMGL 398

Query: 475 PHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
             LQ L  +   L+     +  L L++L  LD+S  + +   +G F  LTSL  L ++ N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 532 NISA-LPPELGLLEPSLQALRLDGNPLRSIRRTILD 566
           +        +     +L  L L    L  I   + D
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  109 bits (274), Expect = 3e-25
 Identities = 56/312 (17%), Positives = 97/312 (31%), Gaps = 67/312 (21%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +        +  LS +P +I   ++ + + L+ NPL+ L+S   +         L+  
Sbjct: 9   EVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSN-----FSELQ-- 59

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 60  ----------------------------WLDLSRCEIETIE------------------- 72

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                       L  LIL+ N I+ +     + L+SL  L      L  + S     +  
Sbjct: 73  ---DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRL-----QQLRILDLS 506
           L+ L++++N I S      FS+L +L  + L    ++    + L+      Q    LD+S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 507 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRR-TI 564
            N +  I +       L EL L  N  S+   +  L     L   RL     +  R   I
Sbjct: 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 565 LDRGTKAVLKYL 576
            +      L  +
Sbjct: 250 FEPSIMEGLCDV 261

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  244 bits (623), Expect = 5e-71
 Identities = 94/577 (16%), Positives = 181/577 (31%), Gaps = 90/577 (15%)

Query: 47  LQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  L LA    +    + +  L  L VL+   +  +      G+  +   +       ++
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 106 I---PDEIGSATALVKFDCSSNQLKELP------SSLGRCLNLSDFKASNNCITSLPEDL 156
           +      +     L   D   + +   P            L  +      N IT + + +
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+  +    +  T  +  +                      +  +L  L  ++L+ 
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA----KQYENEELSWSNLKDLTDVELYN 500

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALS----------ALPAELGKLSKLGTLDLHSNQL 265
              +  +P  +     L    +  N              L  +     K+    +  N L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 266 KEYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +E+   A   ++  L +LD  +N +  L    G    L  L L  N +  +         
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCA--- 616

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-- 380
                 +                                L      L  IP+        
Sbjct: 617 --FTDQVE------------------------------GLGFSHNKLKYIPNIFNAKSVY 644

Query: 381 EITKLDLSRNSIQELPPELSS------CASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            +  +D S N I      +S         +  T+ LS N+I+ +P  +  + S +S + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 435 DNNPLRQVPSDGFKDIP-------MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
            NN +  +P +  K          +L  +DL +N + SL ++   ++LP+L  + +    
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 487 LREAPTDILRLQQLRILDLSQNS-------LQSIPEGFKNLTSLTELDLSDNNISALPPE 539
               PT  L   QL+   +           L+  P G     SL +L +  N+I  +  +
Sbjct: 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEK 824

Query: 540 LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
           L    P L  L +  NP  SI  T +    +A +  L
Sbjct: 825 LT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  184 bits (469), Expect = 6e-50
 Identities = 71/458 (15%), Positives = 145/458 (31%), Gaps = 81/458 (17%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSH-NKLSELPAAIGELHMLKSLDVSFNSI-- 103
                      E  +    NL  LT + + +   +++LP  + +L  L+SL+++ N    
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

Query: 104 --------MKIPDEIGSATALVKFDCSSNQLKELPSS--LGRCLNLSDFKASNNCITSLP 153
                    ++ D+  +   +  F    N L+E P+S  L + + L      +N +  L 
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE 589

Query: 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLIR 211
                  K++ L ++ N++  +  +  A    +  L  S N L  +P      S+  +  
Sbjct: 590 A-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGS 648

Query: 212 LDLHQNRILSIPSSISG------CCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQ 264
           +D   N+I S   +IS         + +   +  N +   P E     S + T+ L +N 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           +                +  NSL            L  + L  N L +L         P 
Sbjct: 709 MTS--------------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L                                    + +     S+ P++   + ++  
Sbjct: 755 L----------------------------------SNMDVSYNCFSSFPTQPLNSSQLKA 780

Query: 385 LDLSRNSI-------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
             +            ++ P  +++C SL  L +  N I+   + +   L  L    + +N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILD---IADN 837

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
           P   +            +  L Y+            + 
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  149 bits (377), Expect = 4e-38
 Identities = 55/316 (17%), Positives = 109/316 (34%), Gaps = 36/316 (11%)

Query: 276 RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           R++ L L+     G +P  IG++T L+ L    +          +      +   R    
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 394
                +     +  +     LS   ++       +  I  +   + + T++    N I  
Sbjct: 384 RMHYKKMFLDYDQRLN----LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 395 LPPELSSCASLQTLILSRNKIKDWPDAI-------------------LTSLSSLSCLKLD 435
           +   +     LQ +  + +       A+                    ++L  L+ ++L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN--------PPFSSLPHLQELYLRRMQ 486
           N P      D   D+P LQ L+++ N   S  +             + P +Q  Y+    
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 487 LRE--APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE 544
           L E  A   + ++ +L +LD   N ++ +   F     LT+L L  N I  +P +     
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 545 PSLQALRLDGNPLRSI 560
             ++ L    N L+ I
Sbjct: 619 DQVEGLGFSHNKLKYI 634

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 20/191 (10%)

Query: 372 IPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
              ++   G +T L L+    +  +P  +     L+ L    +              +  
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 431 CLKLDNNPLRQVPSDGFKDIP-MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489
             +   + +R      F D    L + DL  +  ++  NP    +     + L+  Q+  
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD--AINRNPEMKPIKKDSRISLKDTQI-- 430

Query: 490 APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQA 549
                             N +  I +  + LT L  +  +++  +     +   + +   
Sbjct: 431 --------------GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476

Query: 550 LRLDGNPLRSI 560
            +   N   S 
Sbjct: 477 AKQYENEELSW 487

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  234 bits (598), Expect = 1e-68
 Identities = 127/561 (22%), Positives = 223/561 (39%), Gaps = 56/561 (9%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           V  +    +H  + ++ +DL     +TVLN++HN+L  L  A       L SLDV FN+I
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 104 MKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCS 160
            K+ P+       L   +   N+L +L   +   C NL++    +N I  +  +      
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE---TIGSLSRLIRLDLHQN 217
            +  LD+  N L+            L EL+ S N +  +      I + S L +L+L  N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 218 RILSI-PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCVEA 272
           +I    P        L   ++ N  L     E        + +  L L ++QL       
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 273 ----CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
                   L++LDLS N+L+ +  +    +  L    L  N ++ L S  ++G     ++
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF--NVR 299

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLD 386
           YL                         L  +  + S+   +L  I          +  L+
Sbjct: 300 YLN------------------------LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335

Query: 387 LSRNSIQELPPE-LSSCASLQTLILSRN--KIKDWPDAILTSL--SSLSCLKLDNNPLRQ 441
           +  N I  +     +   +L+ L LS +   ++   +    SL  S L  L L  N + +
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQ 499
           + SD F  +  L++LDL  N I        +  L ++ E+YL   +  +   +    +  
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455

Query: 500 LRILDLSQNSLQSIPEG---FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
           L+ L L + +L+++      F+ L +LT LDLS+NNI+ +  ++      L+ L L  N 
Sbjct: 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 515

Query: 557 LRSIRRTILDRGTKAVLKYLK 577
           L  + +     G    LK L 
Sbjct: 516 LARLWKHANPGGPIYFLKGLS 536

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  225 bits (576), Expect = 1e-65
 Identities = 123/556 (22%), Positives = 215/556 (38%), Gaps = 54/556 (9%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM 104
           L+ L L HN + +L +        LT L++  N + ++      +   L +LD+S N + 
Sbjct: 75  LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

Query: 105 KIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA---SNNCITSL-PEDLADC 159
                       L +   S+N+++ L S        S  K    S+N I    P      
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 160 SKMSKLDVEGNKLTVLSNNLIA---SWTMLTELIASKNLLNGMPETIGS---LSRLIRLD 213
            ++  L +   +L       +    + T +  L  S + L+    T       + L  LD
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 214 LHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 271
           L  N +  +   S +    L  F++  N +  L    L  L  +  L+L  +  K+    
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 272 -----------ACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL--RTLRSSL 317
                           L  L++ +N + G+   +   +  L+ L L+ +    RTL +  
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNET 374

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSE 375
                 + L  L   L +N+ S     + D  +    L    + L L    +       E
Sbjct: 375 FVSLAHSPLHILN--LTKNKIS---KIESDAFSWLGHL----EVLDLGLNEIGQELTGQE 425

Query: 376 IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSLSSLSCL 432
                 I ++ LS N   +L     +   SLQ L+L R  +K+   +      L +L+ L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN-------PPFSSLPHLQELYLRR 484
            L NN +  +  D  + +  L+ILDL +N +A L ++            L HL  L L  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 485 MQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE-LG 541
               E P ++ + L +L+I+DL  N+L ++P   F N  SL  L+L  N I+++  +  G
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

Query: 542 LLEPSLQALRLDGNPL 557
               +L  L +  NP 
Sbjct: 606 PAFRNLTELDMRFNPF 621

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  218 bits (557), Expect = 7e-63
 Identities = 129/612 (21%), Positives = 231/612 (37%), Gaps = 99/612 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            LNL++  LR +P   +  +              L  L +  N I KL+ +  + LP+L 
Sbjct: 29  VLNLTHNQLRRLPAANFTRY------------SQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL 129
           VLN+ HN+LS+L          L  L +  NSI KI  +       L+  D S N L   
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 130 -PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL---DVEGNKLTVLSNNLIASWTM 185
              +  +  NL +   SNN I +L  +  D    S L   ++  N++   S     +   
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 186 LTELIASKNLLNG-MPETIG---SLSRLIRLDLHQNRILSIPSSISGCC---SLAEFYMG 238
           L  L  +   L   + E +    + + +  L L  +++ +  ++        +L    + 
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 239 NNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN-------- 285
            N L+ +       L +L    L  N ++   + +  L     +  L+L  +        
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 286 -SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
            SL  +       +  L  L +  N +  ++S++  G     L  L+             
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----LINLK------------- 356

Query: 344 TKEDLITMATRLSVTSKELSLEG--MNLSAIPSEIWEAGEITK---LDLSRNSIQELPPE 398
                             LSL     +L  + +E + +   +    L+L++N I ++  +
Sbjct: 357 -----------------YLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

Query: 399 -LSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             S    L+ L L  N+I           L ++  + L  N   Q+  + F  +P LQ L
Sbjct: 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 457 DLSYN-IASLPENP-PFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSI 513
            L    + ++  +P PF  L +L  L L    +     D+L  L++L ILDL  N+L  +
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 514 PEG---------FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTI 564
            +           K L+ L  L+L  N    +P E+      L+ + L  N L ++  ++
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579

Query: 565 LDRGTKAVLKYL 576
            +      LK L
Sbjct: 580 FNNQVS--LKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (442), Expect = 6e-47
 Identities = 104/538 (19%), Positives = 190/538 (35%), Gaps = 59/538 (10%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPL--LTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS 102
           LQ+L+L++N I+ L  E+L       L  L +S N++ E  P     +  L  L ++   
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 103 IMK-IPDEIGSA---TALVKFDCSSNQLKELPSSLGRCL---NLSDFKASNNCITSLPED 155
           +   + +++      T++     S++QL    ++    L   NL+    S N +  +  D
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266

Query: 156 -LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM----------PETIG 204
             A   ++    +E N +  L ++ +     +  L   ++                 +  
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 205 SLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLG-----TL 258
            L  L  L++  N I  I  +  +G  +L    + N+  S           L       L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR 314
           +L  N++ +   +A      L VLDL  N +       E   +  + ++ L+ N    L 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
            +         L+ L   L          +          L      L L   N++ I  
Sbjct: 447 RNSFALVP--SLQRLM--LRRVALKN-VDSSPSPFQPLRNL----TILDLSNNNIANIND 497

Query: 375 EIWEA-GEITKLDLSRNSIQELPPE---------LSSCASLQTLILSRNKIKDWPDAILT 424
           ++ E   ++  LDL  N++  L            L   + L  L L  N   + P  +  
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L  L  + L  N L  +P+  F +   L+ L+L  N I S+ +     +  +L EL +R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 484 RMQLREAPTDI------LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
                     I      +      I +LS + L + P  +     +   D S    SA
Sbjct: 618 FNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTSSCKDSA 674

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  129 bits (326), Expect = 1e-31
 Identities = 66/304 (21%), Positives = 109/304 (35%), Gaps = 48/304 (15%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C +   V D S+  L+ +P ++   T +  L LT N LR L ++            L   
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTR-----YSQLT-- 52

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
                                        L +    +S +  E+ +    +  L+L  N 
Sbjct: 53  ----------------------------SLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
           + +L  +  + C +L  L L  N I+   +       +L  L L +N L          +
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 451 PMLQILDLSYN-IASLPENP-PFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQ 507
             LQ L LS N I +L        +   L++L L   Q++E +P     + +L  L L+ 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 508 NSLQ-SIPEGFK---NLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIR 561
             L  S+ E        TS+  L LS++ +S        GL   +L  L L  N L  + 
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264

Query: 562 RTIL 565
               
Sbjct: 265 NDSF 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  231 bits (590), Expect = 3e-68
 Identities = 108/574 (18%), Positives = 200/574 (34%), Gaps = 51/574 (8%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNL 67
             + + N  N  L ++P  +  +                + L  + N +  +       L
Sbjct: 12  EVNKTYNCENLGLNEIPGTLPNS---------------TECLEFSFNVLPTIQNTTFSRL 56

Query: 68  PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             LT L+++  ++  +        H L +L ++ N ++ + +       AL         
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 126 LKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
           +  +    L     L      +N I+S+         K+  LD + N +  LS   ++S 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 184 TMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCC--SLAEFYMG 238
              T   L  + N + G+       +    L+    + L  I   +      SL      
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 239 NNALSALPAEL---GKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPE 293
           +     +   +        + +++L  +           C   L  LDL+   LS LP  
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +  ++TL+KL+L+ N    L     +      L +L  +         +   E+L  +  
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTKRLELGTGCLENLENL-- 352

Query: 354 RLSVTSKELSLEGMNLSAIPS---EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLI 409
                 +EL L   ++        ++     +  L+LS N    L  E    C  L+ L 
Sbjct: 353 ------RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406

Query: 410 LSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
           L+  ++K     +   +L  L  L L ++ L       F  +P LQ L+L  N       
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 468 NPP--FSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSL 523
                  +L  L+ L L    L          L+ +  +DLS N L S       +L  +
Sbjct: 467 QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526

Query: 524 TELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557
             L+L+ N+IS + P L  +    + + L  NPL
Sbjct: 527 Y-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  173 bits (441), Expect = 3e-47
 Identities = 94/513 (18%), Positives = 171/513 (33%), Gaps = 64/513 (12%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLK--SLDVSFNS 102
           L+ L L  N+I  +K         L VL+  +N +  L    +  L      SL+++ N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 103 IMKIPDEIGSATALVKFDCSSNQLKELP---SSLGRCLNLSDFKASNNCITSLPED-LAD 158
           I  I      +      +    Q   +           +L      +     +       
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
             +MS   ++++ +    +S+N    ++ L EL  +   L+ +P  +  LS L +L L  
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 217 NRILSIPS-SISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEAC 273
           N+  ++   S S   SL    +  N          L  L  L  LDL  + ++       
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 274 QLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           QLR    L  L+LS N    L  E   +   L  L L    L+   +         L   
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL--- 427

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDL 387
                                          K L+L    L     ++++    +  L+L
Sbjct: 428 -------------------------------KVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 388 SRNSIQELPPE----LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
             N   +   +    L +   L+ L+LS   +        TSL  ++ + L +N L    
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516

Query: 444 SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502
            +    +  +  L+L+ N I+ +  +     L   + + LR+  L       +    L  
Sbjct: 517 IEALSHLKGIY-LNLASNHISIILPS-LLPILSQQRTINLRQNPLDCTC-SNIYF--LEW 571

Query: 503 LDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534
              +   L+   +   +N   L  + LSD  +S
Sbjct: 572 YKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  163 bits (414), Expect = 2e-43
 Identities = 80/442 (18%), Positives = 137/442 (30%), Gaps = 67/442 (15%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PET 202
           +   CI        +C            L  +   L  S      L  S N+L  +   T
Sbjct: 4   SDQKCIEKEVNKTYNCE--------NLGLNEIPGTLPNS---TECLEFSFNVLPTIQNTT 52

Query: 203 IGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL 260
              L  L  LDL + +I  I   +      L    +  N L  +    L     L  L  
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 261 HSNQLKEYCVEACQL----RLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRS 315
               +    ++   L     L  L L +N +S +  P+      L+ L    N +  L  
Sbjct: 113 IQTGISS--IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
             ++                                      T+  L+L G +++ I   
Sbjct: 171 EDMSSLQ---------------------------------QATNLSLNLNGNDIAGIEPG 197

Query: 376 IWEAGEITKLDLSRNSIQELPPE---LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            +++     L+        +  +    S+  SL          +D   A+   L  +S  
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 433 KLD--NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
            ++   +    + S+ F     LQ LDL+   ++ LP       L  L++L L   +   
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG--LVGLSTLKKLVLSANKFEN 315

Query: 490 APTDILR-LQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISALPPELGLLE-- 544
                      L  L +  N+ +        +NL +L ELDLS ++I         L   
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 545 PSLQALRLDGNPLRSIRRTILD 566
             LQ+L L  N   S++     
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFK 397

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (300), Expect = 1e-28
 Identities = 38/224 (16%), Positives = 74/224 (33%), Gaps = 7/224 (3%)

Query: 360 KELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD 417
           + L      L  I +        +T LDL+R  I  +  +   S   L TL+L+ N +  
Sbjct: 36  ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF 95

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 477
             +  L+   +L  L      +  +      +   L+ L L  N  S  + P       L
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 478 QELYLRRMQLREAPTDILR-LQQLRI--LDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
           + L  +   +     + +  LQQ     L+L+ N +  I  G  +      L+       
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 535 ALPPE--LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
            +  +        SL     +      I   + +   +  ++ +
Sbjct: 216 LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  222 bits (569), Expect = 7e-65
 Identities = 92/562 (16%), Positives = 192/562 (34%), Gaps = 64/562 (11%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSF 100
           +  L L       ++ + +  L  L VL +  +          P  I      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 101 NSIMK-IPDEIG--SATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDL 156
               K   D       + L+K   +S+   K +  S    L  +     +N IT + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+ +  +  +     +                            +L  L  ++++ 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYN 258

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALSALP---------AELGKLSKLGTLDLHSNQLK 266
              L  +P+ +     +    +  N   +           A+     K+  + +  N LK
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 267 EYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            + VE    +++ L +L+   N L G  P  G    L  L L  N +  + ++       
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE- 377

Query: 324 ALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELS-LEGMNLSAIPSEI 376
             ++ L         +P   D++        +++ + +  +  E+  ++G N   +    
Sbjct: 378 -QVENLSFAHNKLKYIPNIFDAK-------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTS-------LSS 428
           ++   ++ ++LS N I + P E  S+ + L ++ L  N + + P   L            
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYL 489

Query: 429 LSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
           L+ + L  N L ++  D     +P L  +DLSYN  +  P      +   L+   +R  +
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ--PLNSSTLKGFGIRNQR 547

Query: 487 -------LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
                  LRE P  I     L  L +  N ++ + E      +++ LD+ DN   ++   
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLS 605

Query: 540 LGLLEPSLQALRLDGNPLRSIR 561
                       L  +  + IR
Sbjct: 606 YVCPYIEAGMYMLFYDKTQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  198 bits (506), Expect = 6e-56
 Identities = 75/521 (14%), Positives = 164/521 (31%), Gaps = 93/521 (17%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L +   +T L++     S  +P AIG+L  L+ L +  +                     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE------------------K 118

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED---LADCSKMSKLDVEGNKLTVLSNNL 179
            N+    P  +   ++    +           D     D S + K  +  +         
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
                  T++    N +  + + +  L++L +  +  +  ++     +     +E+    
Sbjct: 179 SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY---A 235

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
                   +   L  L  +++                      +  +L+ LP  +  +  
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEV---------------------YNCPNLTKLPTFLKALPE 274

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           ++ + +  N   +      +    A                                   
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEK---------------------------I 307

Query: 360 KELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           + + +   NL    + + + +  ++  L+   N ++   P   S   L +L L+ N+I +
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYN-IASLPEN------P 469
            P         +  L   +N L+ +P+    K + ++  +D SYN I S+         P
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG--------FKNL 520
                 ++  + L   Q+ + P ++      L  ++L  N L  IP+         FKN 
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 521 TSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSI 560
             LT +DL  N ++ L  +      P L  + L  N     
Sbjct: 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF 528

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  144 bits (364), Expect = 1e-36
 Identities = 66/424 (15%), Positives = 141/424 (33%), Gaps = 77/424 (18%)

Query: 186 LTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAEFYMGN 239
           +T L       +G +P+ IG L+ L  L L  +       L  P  IS   S  +     
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 240 NALS-ALPAELGKL--SKLGTLDLHSNQLKEYC--VEACQLRLSVLDLSNNSLSGLPPEI 294
                       +   S L    ++S+  ++         L+ + +   +N+++ +   +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354
            ++T LR+  +  +P      ++         +Y +                        
Sbjct: 203 MRLTKLRQFYMGNSPFVA--ENICEAWENENSEYAQ------------------------ 236

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS-IQELPPELSSCASLQTLILSRN 413
                               +     ++T +++     + +LP  L +   +Q + ++ N
Sbjct: 237 -------------QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 414 KIKDWPD-----AILTSLSSLSCLK---LDNNPLRQVP-SDGFKDIPMLQILDLSYN-IA 463
           +             L        ++   +  N L+  P     + +  L +L+  YN + 
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 464 SLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEGF--KNL 520
                P F S   L  L L   Q+ E P +     +Q+  L  + N L+ IP  F  K++
Sbjct: 344 GKL--PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 521 TSLTELDLSDNNIS--------ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAV 572
           + ++ +D S N I          L P       ++ ++ L  N +    + +   G+   
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSP-- 458

Query: 573 LKYL 576
           L  +
Sbjct: 459 LSSI 462

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.9 bits (226), Expect = 2e-19
 Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 33/228 (14%)

Query: 380 GEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIK-DWPDAILTSLSSLSCLKLDNN 437
           G +T L L        +P  +     L+ L L  +  K +        +S+    +    
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH-------LQELYLRRMQLREA 490
                        P     DL  +   +  +P   S+           ++      +   
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKD--CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 491 PTDILRLQQLRILDLSQNSL--------------------QSIPEGFKNLTSLTELDLSD 530
              ++RL +LR   +  +                      ++    + NL  LT++++ +
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258

Query: 531 NNIS-ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 577
                 LP  L  L P +Q + +  N   S  +   D    A     +
Sbjct: 259 CPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  220 bits (563), Expect = 2e-64
 Identities = 106/577 (18%), Positives = 195/577 (33%), Gaps = 58/577 (10%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +      +   +P+ +  +                + L L+ N +  L      + P
Sbjct: 8   PNITYQCMELNFYKIPDNLPFS---------------TKNLDLSFNPLRHLGSYSFFSFP 52

Query: 69  LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQL 126
            L VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 127 KEL-PSSLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L    +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +   
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM 237
             +      L  S N +N +        RL +L L  N      + + I G   L    +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 238 GNNALSALPA----ELGKLSKLGTLDLHSNQLKEYCVEACQL--------RLSVLDLSNN 285
                         +   L  L  L +   +L         +         +S   L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           ++  +          + L L               PT  L    R     N+   A +  
Sbjct: 293 TIERVKD-FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           +  +     L ++   LS +G          +    +  LDLS N +  +         L
Sbjct: 345 D--LPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IA 463
           + L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 464 SLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLT 521
                  F+ L +L  L L + QL +        L  L++L++S N+  S+    +K L 
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 522 SLTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPL 557
           SL  LD S N+I     + L     SL  L L  N  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  177 bits (451), Expect = 1e-48
 Identities = 90/465 (19%), Positives = 154/465 (33%), Gaps = 47/465 (10%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S     I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            ++ + P   K   L KL L  N   +L          A L+  R  L E  +       
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFD-SLNVMKTCIQGLAGLEVHRLVLGEFRNE------ 240

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
                              +   L  + +   E   +  LD   + I       +   ++
Sbjct: 241 -------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI---IDLFNCLTNV 284

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465
            +  L    I+   D   +       L+L N    Q P+   K +  L         A  
Sbjct: 285 SSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA-- 340

Query: 466 PENPPFSSLPHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTS 522
                   LP L+ L L R  L               L+ LDLS N + ++   F  L  
Sbjct: 341 ---FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 523 LTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRRTILD 566
           L  LD   +N+  +      L   +L  L +     R     I +
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  162 bits (411), Expect = 4e-43
 Identities = 105/538 (19%), Positives = 185/538 (34%), Gaps = 70/538 (13%)

Query: 47  LQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI- 103
           L  LIL  N I+ L       L  L  L      L+ L    IG L  LK L+V+ N I 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 104 -MKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKA----SNNCITSLPEDLA 157
             K+P+   + T L   D SSN+++ +  + L     +         S N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 158 DCSKMSKLDVEGNKLTV-----------------LSNNLIASWTMLTELIASK------- 193
              ++ KL +  N  ++                 L      +   L +   S        
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 194 -----------NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
                        L+ + +    L+ +    L    I  +    S         + N   
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKF 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL---PPEIGKMTT 299
              P     L  L  L   SN+      E     L  LDLS N LS            T+
Sbjct: 317 GQFPTLK--LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L+ L L+ N + T+ S+ +       L++L      +       ++  +      L    
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQ---LEHLD--FQHSNLK--QMSEFSVFLSLRNL---- 423

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIK 416
             L +   +     + I+     +  L ++ NS QE  LP   +   +L  L LS+ +++
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                   SLSSL  L + +N    + +  +K +  LQ+LD S N I +  +        
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543

Query: 476 HLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS 529
            L  L L +       E  + +  ++  R L +    ++ + P   + +  +  L+++
Sbjct: 544 SLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM-PVLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.3 bits (240), Expect = 5e-21
 Identities = 58/295 (19%), Positives = 94/295 (31%), Gaps = 66/295 (22%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDG----------------- 70

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                   S + L TLIL+ N I+       + LSSL  L      L  + +     +  
Sbjct: 71  -----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI----LDLS 506
           L+ L++++N I S      FS+L +L+ L L   +++    TD+  L Q+ +    LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 507 QNSLQSIPEGFKNLTSLTELDLSDNNISA-LPPELGLLEPSLQALRLDGNPLRSI 560
            N +  I  G      L +L L +N  S  +          L+  RL     R+ 
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  204 bits (522), Expect = 2e-57
 Identities = 132/555 (23%), Positives = 204/555 (36%), Gaps = 84/555 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM- 104
           L+ L ++ NN       L +   L  L++S NKLS +   AI     LK L++S N  + 
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261

Query: 105 KIPDEIGSATALVKFDCSSNQLK-ELPSSL-GRCLNLSDFKASNNCIT-SLPEDLADCSK 161
            IP       +L     + N+   E+P  L G C  L+    S N    ++P     CS 
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319

Query: 162 MSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGM-PETIGSLS-RLIRLDLHQNR 218
           +  L +  N  +  L  + +     L  L  S N  +G  PE++ +LS  L+ LDL  N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 219 IL-SIPSSISGCC--SLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCVE 271
               I  ++      +L E Y+ NN  +  +P  L   S+L +L L  N L       + 
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439

Query: 272 ACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +   +L  L L  N L G +P E+  + TL  L+L  N L         G  P+ L    
Sbjct: 440 SLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--------TGEIPSGLSNCT 490

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389
           +                       L+     +SL    L+  IP  I     +  L LS 
Sbjct: 491 N-----------------------LNW----ISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKI--------------------KDWPDAILTSLSS 428
           NS    +P EL  C SL  L L+ N                             + +   
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 429 LSCLKLDNNPLR---QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 485
                   N L           + +      +++  +     +P F +   +  L +   
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNR-LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642

Query: 486 QLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGL 542
            L    P +I  +  L IL+L  N +  SIP+   +L  L  LDLS N +   +P  +  
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702

Query: 543 LEPSLQALRLDGNPL 557
           L   L  + L  N L
Sbjct: 703 L-TMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  198 bits (507), Expect = 2e-55
 Identities = 128/529 (24%), Positives = 208/529 (39%), Gaps = 80/529 (15%)

Query: 47  LQKLILAHNNIE-KLKEDLR-NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           LQ L LA N    ++ + L      LT L++S N     +P   G   +L+SL +S N+ 
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 104 M-KIPDE-IGSATALVKFDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD 158
             ++P + +     L   D S N+   ELP SL     +L     S+N  +  +  +L  
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 215
             K +  +L ++ N  T      +++ + L  L  S N L+G  P ++GSLS+L  L L 
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK---EYCV 270
            N +   IP  +    +L    +  N L+  +P+ L   + L  + L +N+L       +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 271 EACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
              +  L++L LSNNS SG +P E+G   +L  L L  N          NG  PA +   
Sbjct: 511 GRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF--------NGTIPAAMFKQ 561

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR 389
             ++  N  +           M          L  +G+       ++         +++ 
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI----RSEQLNRLSTRNPCNITS 617

Query: 390 NSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
                   P   +  S+  L +S N +      I   + S+                   
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSG---YIPKEIGSMP------------------ 656

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508
               L IL+L +N               +             P ++  L+ L ILDLS N
Sbjct: 657 ---YLFILNLGHN--------------DIS---------GSIPDEVGDLRGLNILDLSSN 690

Query: 509 SLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
            L   IP+    LT LTE+DLS+NN+S   PE+G  E +    +   NP
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFE-TFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  192 bits (489), Expect = 7e-53
 Identities = 145/584 (24%), Positives = 225/584 (38%), Gaps = 93/584 (15%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           S++LS++ L    + V  +               L+ L L++++I       +    LT 
Sbjct: 54  SIDLSSKPLNVGFSAVSSSL---------LSLTGLESLFLSNSHINGSVSGFKCSASLTS 104

Query: 73  LNVSHNKLS-ELPAA--IGELHMLKSLDVSFNSI-MKIPDEIGSA-TALVKFDCSSNQL- 126
           L++S N LS  +     +G    LK L+VS N++        G    +L   D S+N + 
Sbjct: 105 LDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164

Query: 127 KELPSSL---GRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
                       C  L     S N I+  +   ++ C  +  LDV  N  +      +  
Sbjct: 165 GANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFST-GIPFLGD 221

Query: 183 WTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN 240
            + L  L  S N L+G     I + + L  L++  N+ +  IP       SL    +  N
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAEN 279

Query: 241 ALS-ALPAEL-GKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNSLSG-LPP 292
             +  +P  L G    L  LDL  N         +   +C   L  L LS+N+ SG LP 
Sbjct: 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG--SCS-LLESLALSSNNFSGELPM 336

Query: 293 E-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           + + KM  L+ L L+ N          +G  P  L  L + L                  
Sbjct: 337 DTLLKMRGLKVLDLSFNEF--------SGELPESLTNLSASL------------------ 370

Query: 352 ATRLSVTSKELSLEGMNLS-AIPSEIWEAG--EITKLDLSRNSIQ-ELPPELSSCASLQT 407
                     L L   N S  I   + +     + +L L  N    ++PP LS+C+ L +
Sbjct: 371 --------LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 408 LILSRNK----IKDWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN- 461
           L LS N     I       L SLS L  LKL  N L  ++P +    +  L+ L L +N 
Sbjct: 423 LHLSFNYLSGTIPSS----LGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFND 477

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFK 518
               +P     S+  +L  + L   +L  E P  I RL+ L IL LS NS   +IP    
Sbjct: 478 LTGEIPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535

Query: 519 NLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSIR 561
           +  SL  LDL+ N  +  +P  +      + A  + G     I+
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 6e-08
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 476 HLQELYLRRMQLREA----PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
            +  + L    L        + +L L  L  L LS + +     GFK   SLT LDLS N
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 532 NIS-ALPPELGLLE-PSLQALRLDGNPL 557
           ++S  +     L     L+ L +  N L
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTL 138

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  199 bits (507), Expect = 1e-56
 Identities = 119/511 (23%), Positives = 187/511 (36%), Gaps = 41/511 (8%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +    +    D S N L+ L S S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLI 210
            +      S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKL----GTLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++    L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE--IGKMTTLRKLLLTG------NPLRTLR 314
            +      A + +RL  L L NN  S    +  I  +  L    L          L    
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL------------ITMATRLSVTSKEL 362
            S + G     ++  R    +    +       L            I      S      
Sbjct: 248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ 307

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI--KDWPD 420
            LE +N         +   + +L  + N       E+    SL+ L LSRN +  K    
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCS 366

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
                 +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F SL +L  
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 480 LYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSI--PEGFKNLTSLTELDLSDNNISAL 536
           L +     R A   I   L  L +L ++ NS Q    P+ F  L +LT LDLS   +  L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 537 PPELGLLEPSLQALRLDGNPLRSIRRTILDR 567
            P       SLQ L +  N L+S+   I DR
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  197 bits (503), Expect = 4e-56
 Identities = 111/577 (19%), Positives = 189/577 (32%), Gaps = 89/577 (15%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           +      +   +P+ +                   + L L+ N +  L      + P L 
Sbjct: 11  TYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L  L
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 130 PS-SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            +  +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +     +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 187 T----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSL------AE 234
                 L  S N +N +        RL +L L  N      + + I G   L        
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-----RLSVLDLSNNSLS 288
            +     L       L  L  L   +     L  Y  +   L      +S   L + ++ 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348
            +          + L L                    LK L                   
Sbjct: 296 RVKDFSY-NFGWQHLELVNCKF--------GQFPTLKLKSL------------------- 327

Query: 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL---PPELSSCASL 405
                      K L+          SE+     +  LDLSRN +              SL
Sbjct: 328 -----------KRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IA 463
           + L LS N +       L  L  L  L   ++ L+Q+     F  +  L  LD+S+    
Sbjct: 376 KYLDLSFNGVITMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 464 SLPENPPFSSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQSIPEG-FKNL 520
                  F+ L  L+ L +     +E   P     L+ L  LDLSQ  L+ +    F +L
Sbjct: 435 VAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557
           +SL  L+++ N + ++P  +     SLQ + L  NP 
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  188 bits (479), Expect = 1e-52
 Identities = 108/552 (19%), Positives = 194/552 (35%), Gaps = 82/552 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L+LS   LR + +  + +F             +LQ L L+   I+ +++   ++L  L+
Sbjct: 32  NLDLSFNPLRHLGSYSFFSF------------PELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL 129
            L ++ N +  L   A   L  L+ L     ++  + +  IG    L + + + N ++  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 130 --PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMS----KLDVEGNKLTVLSNNLIAS 182
             P       NL     S+N I S+   DL    +M      LD+  N +  +       
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 183 WTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIP-------SSISGCCSLA 233
              L +L    N  +   M   I  L+ L    L      +         S++ G C+L 
Sbjct: 200 -IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 234 EFYMGNNAL----SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
                   L      +      L+ + +  L S  ++     +       L+L N     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
            P    K+ +L++L  T N      S +        L  L                    
Sbjct: 319 FPT--LKLKSLKRLTFTSNKGGNAFSEVD-------LPSLE------------------- 350

Query: 350 TMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                       L L    LS         +    +  LDLS N +  +         L+
Sbjct: 351 -----------FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 399

Query: 407 TLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IAS 464
            L    + +K     ++  SL +L  L + +   R   +  F  +  L++L ++ N    
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTS 522
                 F+ L +L  L L + QL +        L  L++L+++ N L+S+P+G F  LTS
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 523 LTELDLSDNNIS 534
           L ++ L  N   
Sbjct: 520 LQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  176 bits (449), Expect = 2e-48
 Identities = 91/479 (18%), Positives = 162/479 (33%), Gaps = 55/479 (11%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +  I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRLPENEDSEAST 343
            ++ + P   K   L KL L  N       +++      L  L+  R  L E  +     
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 344 TK-EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
              +  +     L++    L+     L  I         ++   L   +I+ +       
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD----- 299

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
                                +       L+L N    Q P+   K    L+ L  + N 
Sbjct: 300 --------------------FSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSN- 335

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLRE---APTDILRLQQLRILDLSQNSLQSIPEGFKN 519
                      LP L+ L L R  L               L+ LDLS N + ++   F  
Sbjct: 336 -KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 520 LTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 577
           L  L  LD   +N+  +      L   +L  L +     R     I +  +   L+ LK
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS--LEVLK 451

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  120 bits (302), Expect = 7e-29
 Identities = 63/210 (30%), Positives = 85/210 (40%), Gaps = 13/210 (6%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKI 415
           V +       +N   IP  +        LDLS N ++ L      S   LQ L LSR +I
Sbjct: 7   VPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
           +   D    SLS LS L L  NP++ +    F  +  LQ L      +ASL    P   L
Sbjct: 65  QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHL 123

Query: 475 PHLQELYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLT----ELD 527
             L+EL +    ++    P     L  L  LDLS N +QSI     + L  +      LD
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 528 LSDNNISALPPELGLLEPSLQALRLDGNPL 557
           LS N ++ + P     E  L  L L  N  
Sbjct: 184 LSLNPMNFIQPGA-FKEIRLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (252), Expect = 1e-22
 Identities = 58/297 (19%), Positives = 95/297 (31%), Gaps = 66/297 (22%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
             +          +   +P  +    + + L L+ NPLR L S             L+  
Sbjct: 5   EVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFS-----FPELQ-- 55

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        L L    +  I                    
Sbjct: 56  ----------------------------VLDLSRCEIQTIEDGA---------------- 71

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
                   S + L TLIL+ N I+       + LSSL  L      L  + +     +  
Sbjct: 72  ------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI----LDLS 506
           L+ L++++N I S      FS+L +L+ L L   +++    TD+  L Q+ +    LDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 507 QNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLRSIRR 562
            N +  I  G      L +L L +N  S    +  +     L+  RL     R+   
Sbjct: 186 LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.2 bits (237), Expect = 9e-21
 Identities = 54/261 (20%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++    L    IE++ +D         L + + K  + P    +L  LK L  + N    
Sbjct: 283 NVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339

Query: 106 IPDEIGSATALVKFDCSSNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
              E+    +L   D S N L        S     +L     S N + ++  +     ++
Sbjct: 340 AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL 220
             LD + + L  +S  ++  S   L  L  S              LS L  L +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 221 SI--PSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR- 276
               P   +   +L    +    L  L       LS L  L++ SNQLK   V       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDR 516

Query: 277 ---LSVLDLSNNSLSGLPPEI 294
              L  + L  N      P I
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIM 104
           L+ L L+ N +  +  +   L  L  L+  H+ L ++        L  L  LD+S     
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 105 KIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPED-LADCS 160
              + I    ++L     + N  +E  LP       NL+    S   +  L        S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            +  L++  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  193 bits (491), Expect = 2e-54
 Identities = 102/526 (19%), Positives = 192/526 (36%), Gaps = 57/526 (10%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
           +     V +      + +P+ +     +KSLD+SFN I  I                   
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG------------------ 42

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
                  L  C NL      ++ I ++  D       +  LD+  N L+ LS++     +
Sbjct: 43  ----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 185 MLTELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNN 240
            L  L    N    +  T    +L+ L  L +      S       +G  SL E  +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKM 297
           +L    ++ L  +  +  L LH ++          +   +  L+L + +L+        +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-------RLPENEDSEASTTKEDLIT 350
             +   +       ++ +         LL+Y+             N   + + ++ D+++
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 351 MATRLSVTS-KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQT 407
              ++   + + L +    L    S ++    ++ ++ +  + +  +P        SL+ 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 408 LILSRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQVPSDG--FKDIPMLQILDLSYN- 461
           L LS N + +      A   +  SL  L L  N LR +   G     +  L  LD+S N 
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLT 521
              +P++        ++ L L    +R   T I   Q L +LD+S N+L S       L 
Sbjct: 399 FHPMPDS--CQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDSFSL---FLP 451

Query: 522 SLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 567
            L EL +S N +  LP       P L  +++  N L+S+   I DR
Sbjct: 452 RLQELYISRNKLKTLPDASLF--PVLLVMKISRNQLKSVPDGIFDR 495

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  132 bits (335), Expect = 3e-33
 Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 7/213 (3%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPD 420
                 + ++IPS +     +  LDLS N I  +    L +CA+LQ LIL  ++I     
Sbjct: 10  CDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
               SL SL  L L +N L  + S  F  +  L+ L+L  N   +L     F +L +LQ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 480 LYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 536
           L +  ++        D   L  L  L++   SL++      K++  +  L L  +  + L
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 537 PPELGLLEPSLQALRLDGNPLRSIRRTILDRGT 569
                 +  S++ L L    L   + + L    
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  130 bits (328), Expect = 2e-32
 Identities = 78/473 (16%), Positives = 150/473 (31%), Gaps = 89/473 (18%)

Query: 14  LNLSNRSLRDVPNEVYKN-------------FDEAGEGDKWWEAVDLQKLILAHNNI--E 58
           L+LS+  L  + +  +               +   G    +    +LQ L + +     E
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 59  KLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSA-TAL 116
             + D   L  L  L +    L    + ++  +  +  L +  +    + +      +++
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 117 VKFDCSSNQLKELPSSLGRCL------------NLSDFKASNNCITSLPEDLADCSKMSK 164
              +     L     S                        S N +  L   + + S++  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 165 LDVEGNKLTVLSNNLIASWTMLTEL---------IASKNLLNGMPETIGSLSRLIRLDLH 215
            D   N L   + +     + L ++         I    L   +      L ++ R+ + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 216 QNRILSIPSSI-SGCCSLAEFYMGNNALSAL----PAELGKLSKLGTLDLHSNQLKEYCV 270
            +++  +P S      SL    +  N +        A  G    L TL L  N L+    
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 271 EACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
               L     L+ LD+S N+   +P        +R L L+   +R +           + 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVV--------KTCIP 430

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
           + L                              + L +   NL +    +     + +L 
Sbjct: 431 QTL------------------------------EVLDVSNNNLDSFSLFL---PRLQELY 457

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           +SRN ++ LP   S    L  + +SRN++K  PD I   L+SL  + L  NP 
Sbjct: 458 ISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 47  LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           LQ L+L+ N++  +++    L  L  LT L++S N    +P +      ++ L++S   I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
             +   I     L   D S+N L      L     L +   S N + +LP+  +    + 
Sbjct: 423 RVVKTCI--PQTLEVLDVSNNNLDSFSLFLP---RLQELYISRNKLKTLPDA-SLFPVLL 476

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            + +  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  187 bits (476), Expect = 3e-53
 Identities = 108/529 (20%), Positives = 182/529 (34%), Gaps = 107/529 (20%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIMK 105
           LQ+ +   +N+ ++  +  N+   T    + ++     P   GE   +    +       
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-- 70

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                       + + ++  L  LP       +L    AS N +T LPE       +   
Sbjct: 71  --------RQAHELELNNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +     L+ L   L         L  S N L  +PE + + S L  +D+  N +  +P  
Sbjct: 120 NNNLKALSDLPPLL-------EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL 171

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
                SL     GNN L  LP EL  L  L  +   +N LK+       L    +   NN
Sbjct: 172 PP---SLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLE--SIVAGNN 225

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L  LP E+  +  L  +    N L+TL         P L   L                
Sbjct: 226 ILEELP-ELQNLPFLTTIYADNNLLKTL---------PDLPPSL---------------- 259

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
                         + L++    L+ +P        +T LD+S N    L     +   L
Sbjct: 260 --------------EALNVRDNYLTDLPELP---QSLTFLDVSENIFSGLSELPPN---L 299

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IAS 464
             L  S N+I+   D       SL  L + NN L ++P+      P L+ L  S+N +A 
Sbjct: 300 YYLNASSNEIRSLCD----LPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAE 351

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI----------------LDLSQN 508
           +PE        +L++L++    LRE P     ++ LR+                L +  N
Sbjct: 352 VPE-----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406

Query: 509 SLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557
            L+  P+      S+ +L ++   +             L+    + +  
Sbjct: 407 PLREFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  172 bits (439), Expect = 6e-48
 Identities = 94/449 (20%), Positives = 175/449 (38%), Gaps = 73/449 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L L+N  L  +P                     L+ L+ + N++ +L E  ++L  L V
Sbjct: 75  ELELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQSLKSLLV 118

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
            N +   LS+LP       +L+ L VS N + K+P E+ +++ L   D  +N LK+LP  
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL 171

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                +L    A NN +  LPE L +   ++ +  + N L  L +        L  ++A 
Sbjct: 172 PP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAG 223

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N+L  +PE + +L  L  +    N + ++P       SL    + +N L+ LP     L
Sbjct: 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQSL 279

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
           + L   +   + L E         L  L+ S+N +  L        +L +L ++ N L  
Sbjct: 280 TFLDVSENIFSGLSELPPN-----LYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE 331

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
           L +          L+ L      N            +     L    K+L +E   L   
Sbjct: 332 LPALPPR------LERL--IASFNH-----------LAEVPELPQNLKQLHVEYNPLREF 372

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
           P        +  L ++ + + E+P       +L+ L +  N ++++PD       S+  L
Sbjct: 373 PDIP---ESVEDLRMN-SHLAEVPELPQ---NLKQLHVETNPLREFPD----IPESVEDL 421

Query: 433 KLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++++  +        +    L+     ++
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  172 bits (438), Expect = 8e-48
 Identities = 110/499 (22%), Positives = 189/499 (37%), Gaps = 68/499 (13%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPL--LT 71
               + +L ++P E  +N     E    W   +           E     LR+       
Sbjct: 16  PLRHSSNLTEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAH 74

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +++  LS LP     L   +SL  S NS+ ++P+   S  +L+  + +   L +LP 
Sbjct: 75  ELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 131

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            L   L +S     NN +  LPE L + S +  +DV+ N L  L +        L  + A
Sbjct: 132 LL-EYLGVS-----NNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAA 180

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
             N L  +PE + +L  L  +    N +  +P       SL     GNN L  LP EL  
Sbjct: 181 GNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQN 235

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L  L T+   +N LK        L    L++ +N L+ LP        L  L ++ N   
Sbjct: 236 LPFLTTIYADNNLLKTLPDLPPSLE--ALNVRDNYLTDLPELPQS---LTFLDVSENIFS 290

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L     N      L YL      NE          L  +   L    +EL++    L  
Sbjct: 291 GLSELPPN------LYYLN--ASSNEIRS-------LCDLPPSL----EELNVSNNKLIE 331

Query: 372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC 431
           +P+       + +L  S N + E+P    +   L+ L +  N ++++PD       S+  
Sbjct: 332 LPALP---PRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLREFPD----IPESVED 381

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L+++++ L +VP         L+ L +  N +   P+         +++L +   ++ + 
Sbjct: 382 LRMNSH-LAEVPEL----PQNLKQLHVETNPLREFPD-----IPESVEDLRMNSERVVDP 431

Query: 491 PTDIL-RLQQLRILDLSQN 508
                    +L       +
Sbjct: 432 YEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  168 bits (428), Expect = 2e-46
 Identities = 92/502 (18%), Positives = 172/502 (34%), Gaps = 97/502 (19%)

Query: 83  LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSD 141
           +         L+      +++ ++P E  +  +  ++  + ++  +  P   G    ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
            +  +       E          L++    L+ L          L  L+AS N L  +PE
Sbjct: 63  SRLRDCLDRQAHE----------LELNNLGLSSLPELP----PHLESLVASCNSLTELPE 108

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
              SL  L+  + +   +  +P        L    + NN L  LP EL   S L  +D+ 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161

Query: 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
           +N LK+       L    +   NN L  L PE+  +  L  +    N L+ L    ++  
Sbjct: 162 NNSLKKLPDLPPSLE--FIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLS-- 216

Query: 322 TPALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
               L+ +         LPE             +     L      +  +   L  +P  
Sbjct: 217 ----LESIVAGNNILEELPE-------------LQNLPFL----TTIYADNNLLKTLPDL 255

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 +  L++  N + +LP       SL  L +S N      +       +L  L   
Sbjct: 256 P---PSLEALNVRDNYLTDLPELPQ---SLTFLDVSENIFSGLSE----LPPNLYYLNAS 305

Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
           +N +R +        P L+ L++S N +  LP     +  P L+ L      L E P   
Sbjct: 306 SNEIRSLCD----LPPSLEELNVSNNKLIELP-----ALPPRLERLIASFNHLAEVPELP 356

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLT----------------SLTELDLSDNNISALPP 538
              Q L+ L +  N L+  P+  +++                 +L +L +  N +   P 
Sbjct: 357 ---QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD 413

Query: 539 ELGLLEPSLQALRLDGNPLRSI 560
                  S++ LR++   +   
Sbjct: 414 IPE----SVEDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (315), Expect = 4e-31
 Identities = 65/291 (22%), Positives = 104/291 (35%), Gaps = 33/291 (11%)

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
           + P     T L++ L   + L  +     N  +        S    N        +E  +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 350 TMATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408
           +           EL L  + LS++P        +  L  S NS+ ELP    S  SL   
Sbjct: 63  SRLRDCLDRQAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 409 ILSRNKIKDWPDAI---------------LTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
             +   + D P  +               L + S L  + +DNN L+++P       P L
Sbjct: 120 NNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSL 175

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI 513
           + +    N   L E P   +LP L  +Y     L++ P        L  +    N L+ +
Sbjct: 176 EFIAAGNN--QLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEEL 230

Query: 514 PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTI 564
           PE  +NL  LT +   +N +  LP        SL+AL +  N L  +    
Sbjct: 231 PE-LQNLPFLTTIYADNNLLKTLPDLPP----SLEALNVRDNYLTDLPELP 276

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  187 bits (477), Expect = 4e-51
 Identities = 89/488 (18%), Positives = 167/488 (34%), Gaps = 44/488 (9%)

Query: 120 DCSSNQLKELPSSLG--RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTV-L 175
                 L ++P  L     L LS      N I ++         ++  L++      + +
Sbjct: 10  FYRFCNLTQVPQVLNTTERLLLS-----FNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI---PSSISGCCS 231
                 +   L  L    + +  +       L  L  L L+   +              +
Sbjct: 65  DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124

Query: 232 LAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQ----LRLSVLDLSNN 285
           L    +  N + +L      GKL+ L ++D  SNQ+   C    +      LS   L+ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 286 SLSGLPP-------EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           SL               +   L  L ++GN      +   +        +          
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244

Query: 339 SEASTTKEDLITMATRLSVTS---KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQE 394
           +             T   +     + L L    + ++ S ++E   ++  L+L+ N I +
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304

Query: 395 LPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
           +  E      +LQ L LS N + +   +    L  ++ + L  N +  +    FK +  L
Sbjct: 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS 512
           Q LDL  N + ++        +P + +++L   +L   P   L    +    LS+N L++
Sbjct: 365 QTLDLRDNALTTIH------FIPSIPDIFLSGNKLVTLPKINLTANLI---HLSENRLEN 415

Query: 513 IPEG--FKNLTSLTELDLSDNNISALPPELGL-LEPSLQALRLDGNPLRSIRRTILDRGT 569
           +        +  L  L L+ N  S+   +      PSL+ L L  N L+    T L    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 570 KAVLKYLK 577
              L +L+
Sbjct: 476 FEGLSHLQ 483

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  185 bits (471), Expect = 3e-50
 Identities = 121/578 (20%), Positives = 207/578 (35%), Gaps = 84/578 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED--LRNLPLL 70
            L LS   +R V    +                 LQ L L         +    RNLP L
Sbjct: 28  RLLLSFNYIRTVTASSFPFL------------EQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQL 126
            +L++  +K+  L   A   L  L  L + F  +           +  AL + D S NQ+
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 127 KELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + L    S G+  +L     S+N I  + E       +  L  +      L+ N + S  
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-----LEPLQGKTLSFFSLAANSLYSRV 190

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
            +          N           L  LD+  N      +              +NA+S 
Sbjct: 191 SVDWGKCMNPFRN---------MVLEILDVSGNGWTVDITGNF-----------SNAISK 230

Query: 245 LPA-ELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLPPEI-GKMT 298
             A  L     +       + +K+          +  +  LDLS+  +  L   +   + 
Sbjct: 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSV 357
            L+ L L  N +  +      G     L+ L   L  N   E  S+    L  +      
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDN--LQVL--NLSYNLLGELYSSNFYGLPKV------ 340

Query: 358 TSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK 416
               + L+  +++ I  + ++   ++  LDL  N++  +        S+  + LS NK+ 
Sbjct: 341 --AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFLSGNKLV 394

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSL 474
                +     + + + L  N L  +    F   +P LQIL L+ N  +S   +   S  
Sbjct: 395 T----LPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450

Query: 475 PHLQELYLRRMQLREAPTDILR------LQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 527
           P L++L+L    L+ A    L       L  L++L L+ N L S+P G F +LT+L  L 
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510

Query: 528 LSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 565
           L+ N ++ L      L  +L+ L +  N L +    + 
Sbjct: 511 LNSNRLTVLSH--NDLPANLEILDISRNQLLAPNPDVF 546

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (377), Expect = 5e-38
 Identities = 105/569 (18%), Positives = 191/569 (33%), Gaps = 66/569 (11%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL---KEDLRNLPLL 70
           L+L +  +  +  + ++                L +L L    +          RNL  L
Sbjct: 78  LDLGSSKIYFLHPDAFQGLF------------HLFELRLYFCGLSDAVLKDGYFRNLKAL 125

Query: 71  TVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKIPDEI---GSATALVKFDCSSNQ 125
           T L++S N++  L    + G+L+ LKS+D S N I  + +          L  F  ++N 
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           L    S       +  R + L     S N  T                   N ++     
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFS-----------NAISKSQAF 234

Query: 179 LIASWTMLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
            +     +       + +    +      + S +  LDL    + S+ S +      L  
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLP 291
             +  N ++ +  E    L  L  L+L  N L E          +++ +DL  N ++ + 
Sbjct: 295 LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ 354

Query: 292 PEI-GKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +    +  L+ L L  N L T      +    ++G     L  +         SE    
Sbjct: 355 DQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE---- 398
             D++    R+    + L L     S+   +   +    + +L L  N +Q         
Sbjct: 415 NLDILYFLLRVP-HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473

Query: 399 --LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
                 + LQ L L+ N +   P  + + L++L  L L++N L  +  +       L+IL
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEIL 531

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLRILDLSQNSLQSIP 514
           D+S N    P    F SL  L   + + +   E  T  + L    + I     +     P
Sbjct: 532 DISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP 591

Query: 515 EGFKNLTSLTELDLSDNNISALPPELGLL 543
           + F    SL  L     +   +   L   
Sbjct: 592 DSFSG-VSLFSLSTEGCDEEEVLKSLKFS 619

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (256), Expect = 6e-23
 Identities = 59/331 (17%), Positives = 105/331 (31%), Gaps = 86/331 (25%)

Query: 272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 331
           +C     +      +L+ +P  +    T  +LLL+ N +RT+ +S         L+ L+ 
Sbjct: 1   SCSFDGRIAFYRFCNLTQVPQVL---NTTERLLLSFNYIRTVTASSFPF-----LEQLQ- 51

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 391
                                         L L                    L + + +
Sbjct: 52  -----------------------------LLELGSQYTP--------------LTIDKEA 68

Query: 392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ--VPSDGFKD 449
            + LP       +L+ L L  +KI          L  L  L+L    L    +    F++
Sbjct: 69  FRNLP-------NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI---LRLQQLRILDL 505
           +  L  LDLS N I SL  +P F  L  L+ +     Q+          L+ + L    L
Sbjct: 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181

Query: 506 SQNSLQSIPEG--------FKNLTSLTELDLSDNNISALPPELGL------------LEP 545
           + NSL S            F+N+  L  LD+S N  +                    L  
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNM-VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 546 SLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
            +       + ++   +       ++ +++L
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  175 bits (447), Expect = 5e-49
 Identities = 95/488 (19%), Positives = 181/488 (37%), Gaps = 57/488 (11%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
            I     I ++      L       +    +++  +   +L  + +L      I  I   
Sbjct: 7   TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSID-G 63

Query: 110 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169
           +     L + + S+NQL ++   L     L D   +NN I  +   LA+ + ++ L +  
Sbjct: 64  VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
           N++T +    + + T L  L  S N ++     +  L+ L +L    N++  +   ++  
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDL-KPLANL 176

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
            +L    + +N +S +   L KL+ L +L   +NQ+ +         L  L L+ N L  
Sbjct: 177 TTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
           +   +  +T L  L L  N +  L          + L  L                    
Sbjct: 236 IGT-LASLTNLTDLDLANNQISNL-------APLSGLTKL-------------------- 267

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLI 409
                      EL L    +S I   +     +T L+L+ N ++++ P +S+  +L  L 
Sbjct: 268 ----------TELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLT 315

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP 469
           L  N I D     ++SL+ L  L   NN +  V S    ++  +  L   +N   + +  
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHN--QISDLT 369

Query: 470 PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 529
           P ++L  + +L L       AP +      +     +       P    +  S TE D++
Sbjct: 370 PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429

Query: 530 DNNISALP 537
            N  S   
Sbjct: 430 WNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (388), Expect = 8e-41
 Identities = 90/426 (21%), Positives = 175/426 (41%), Gaps = 53/426 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L ++  ++N +  +   L+NL  L  + +++N+++++   +  L  L  L +  N I  I
Sbjct: 70  LTQINFSNNQLTDI-TPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDI 127

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + + SSN + ++ + L    +L      N      P  LA+ + + +LD
Sbjct: 128 D-PLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKP--LANLTTLERLD 183

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK++ +S   +A  T L  LIA+ N ++ +   +G L+ L  L L+ N++  I + +
Sbjct: 184 ISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGT-L 239

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +   +L +  + NN +S L   L  L+KL  L L +NQ+      A    L+ L+L+ N 
Sbjct: 240 ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L  + P I  +  L  L L  N +  + S + +      L  L                 
Sbjct: 299 LEDISP-ISNLKNLTYLTLYFNNISDI-SPVSS------LTKL----------------- 333

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L      +S +   +     I  L    N I +L P L++   + 
Sbjct: 334 -------------QRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRIT 378

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 466
            L L+     + P     ++S  + +K     L  +      D       D+++N+ S  
Sbjct: 379 QLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPSYT 436

Query: 467 ENPPFS 472
               ++
Sbjct: 437 NEVSYT 442

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  152 bits (386), Expect = 2e-40
 Identities = 82/439 (18%), Positives = 164/439 (37%), Gaps = 58/439 (13%)

Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
               + ++  +                +T       D  +++ L  +   +  +    + 
Sbjct: 10  QDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG--VE 65

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
               LT++  S N L  +   + +L++L+ + ++ N+I  I   ++   +L    + NN 
Sbjct: 66  YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123

Query: 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301
           ++ +   L  L+ L  L+L SN + +    +    L  L   N         +  +TTL 
Sbjct: 124 ITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD--LKPLANLTTLE 180

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
           +L ++ N +  + S L        L  L                              + 
Sbjct: 181 RLDISSNKVSDI-SVLAK------LTNL------------------------------ES 203

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           L      +S I   +     + +L L+ N ++++   L+S  +L  L L+ N+I +    
Sbjct: 204 LIATNNQISDIT-PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP- 260

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
            L+ L+ L+ LKL  N +  +       +  L  L+L+ N   L +  P S+L +L  L 
Sbjct: 261 -LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNEN--QLEDISPISNLKNLTYLT 315

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELG 541
           L    + +  + +  L +L+ L    N +  +     NLT++  L    N IS L P   
Sbjct: 316 LYFNNISD-ISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLAN 373

Query: 542 LLEPSLQALRLDGNPLRSI 560
           L    +  L L+     + 
Sbjct: 374 L--TRITQLGLNDQAWTNA 390

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  132 bits (335), Expect = 1e-33
 Identities = 78/370 (21%), Positives = 151/370 (40%), Gaps = 30/370 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L +N I  + + L+NL  L  L +S N +S++ A +  L  L+ L    N +  +
Sbjct: 114 LTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDL 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T L + D SSN++ ++   L +  NL    A+NN I+ +   L   + + +L 
Sbjct: 171 K-PLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELS 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           + GN+L  +    +AS T LT+L  + N ++ +   +  L++L  L L  N+I +I   +
Sbjct: 228 LNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-L 283

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +G  +L    +  N L  +   +  L  L  L L+ N + +    +   +L  L   NN 
Sbjct: 284 AGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK 342

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           +S +   +  +T +  L    N +  L   ++L        +  L            +  
Sbjct: 343 VSDVSS-LANLTNINWLSAGHNQISDLTPLANLTR------ITQL----------GLNDQ 385

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                 +  + +V+              P+ I + G  T+ D++ N          + + 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 405 LQTLILSRNK 414
             T+      
Sbjct: 446 PVTIGKGTTT 455

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 24/152 (15%), Positives = 58/152 (38%), Gaps = 4/152 (2%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  NNI  +   + +L  L  L   +NK+S++ + +  L  +  L    N I  +
Sbjct: 311 LTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDL 368

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + T + +   +       P +    +++ +   +       P  ++D    ++ D
Sbjct: 369 T-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPD 427

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNG 198
           +  N  +   N +  +++    +       +G
Sbjct: 428 ITWNLPSYT-NEVSYTFSQPVTIGKGTTTFSG 458

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  170 bits (433), Expect = 2e-48
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 25/289 (8%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNL-----PLLTVLNVSHNKLSELPAAIGELHML 93
              W   +     +       LK     L     P    L +    L + P     L  L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS-NNCITSL 152
           + + +    +M++PD +     L     + N L+ LP+S+     L +        +T L
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
           PE LA                  ++        L  L      +  +P +I +L  L  L
Sbjct: 167 PEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 213 DLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAELGKLSKLGTLDL-HSNQLKEYCV 270
            +  + + ++  +I     L E  + G  AL   P   G  + L  L L   + L    +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 271 EACQLR-LSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           +  +L  L  LDL     LS LP  I ++     +L+  +    L    
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  138 bits (349), Expect = 1e-36
 Identities = 66/370 (17%), Positives = 114/370 (30%), Gaps = 61/370 (16%)

Query: 196 LNGMPETIGSLSRLIRLDLH-QNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK 254
           +          S    L       +      +S        Y  +             + 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNN 57

Query: 255 LGTLDLHSNQLKEYCVEACQLR---LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                     LK                L+L +  L   P +  +++ L+ + +    L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
            L  ++           L                              + L+L    L A
Sbjct: 118 ELPDTMQQ------FAGL------------------------------ETLTLARNPLRA 141

Query: 372 IPSEIWEAGEITKLDLSR-NSIQELPPELSSCA---------SLQTLILSRNKIKDWPDA 421
           +P+ I     + +L +     + ELP  L+S           +LQ+L L    I+  P +
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS 201

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQE 479
           I  +L +L  LK+ N+PL  +       +P L+ LDL     + + P    F     L+ 
Sbjct: 202 I-ANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKR 257

Query: 480 LYLRRM-QLREAPTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALP 537
           L L+    L   P DI RL QL  LDL     L  +P     L +   + +  +  + L 
Sbjct: 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 538 PELGLLEPSL 547
               +  P+ 
Sbjct: 318 QHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  129 bits (327), Expect = 1e-33
 Identities = 62/323 (19%), Positives = 104/323 (32%), Gaps = 58/323 (17%)

Query: 242 LSALPAELGKLSKLGTLDLH-SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           + +        S    L    S  L+ Y     Q +      ++ +              
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQR--HYNADRNRWHSAWRQANSNNP 58

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
           +    TG  L+     L +   P                                     
Sbjct: 59  QIETRTGRALKATADLLEDATQPGR----------------------------------V 84

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
            L L  + L   P + +    +  + +    + ELP  +   A L+TL L+RN ++  P 
Sbjct: 85  ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA 144

Query: 421 AILTSLSSLSCLKL-DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
           +I  SL+ L  L +     L ++P                  +AS   +     L +LQ 
Sbjct: 145 SI-ASLNRLRELSIRACPELTELPE----------------PLASTDASGEHQGLVNLQS 187

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNN-ISALPP 538
           L L    +R  P  I  LQ L+ L +  + L ++     +L  L ELDL     +   PP
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247

Query: 539 ELGLLEPSLQALRL-DGNPLRSI 560
             G     L+ L L D + L ++
Sbjct: 248 IFGGR-APLKRLILKDCSNLLTL 269

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 1e-21
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 8/173 (4%)

Query: 14  LNLS-NRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           L++     L ++P  +                V+LQ L L    I  L   + NL  L  
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQ----GLVNLQSLRLEWTGIRSLPASIANLQNLKS 210

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVS-FNSIMKIPDEIGSATALVKFDCSS-NQLKELP 130
           L + ++ LS L  AI  L  L+ LD+    ++   P   G    L +      + L  LP
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 131 SSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
             + R   L          ++ LP  +A       + V  +    L  +   +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  173 bits (441), Expect = 3e-48
 Identities = 83/453 (18%), Positives = 145/453 (32%), Gaps = 74/453 (16%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            C +  L ++P                     LP  +      + +D+  N +  L+   
Sbjct: 16  ICINRGLHQVPE--------------------LPAHV------NYVDLSLNSIAELNETS 49

Query: 180 IASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
            +    L  L   +          T   LS LI L L  N+ L + +             
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA----------- 98

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPE 293
                         L+ L  L L    L    +     +    L +L L +N++  + P 
Sbjct: 99  -----------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147

Query: 294 I--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                M     L LT N ++++    +          LR  L      + +         
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR--LSSITLQDMNEYWLGWEKC 205

Query: 352 ATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLIL 410
                 TS   L L G       ++               +  ++   + S +       
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKR---------FFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 411 SRNKIKDWPDAILTSL--SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
                KD  +     L  S +    L  + +  +    F     L+ L L+ N I  + +
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 468 NPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTE 525
           N  F  L HL +L L +  L    + +   L +L +LDLS N ++++ +  F  L +L E
Sbjct: 317 NA-FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375

Query: 526 LDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558
           L L  N + ++P  +     SLQ + L  NP  
Sbjct: 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (285), Expect = 4e-27
 Identities = 73/433 (16%), Positives = 138/433 (31%), Gaps = 73/433 (16%)

Query: 45  VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFN 101
             +  + L+ N+I +L E     L  L  L V       +        L  L  L + +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCL-NLSDFKASNNCITSLPEDLA 157
             +++          L     +   L    L  +  + L +L      +N I  +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 158 DCS--KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             +  +   LD+  NK+  +    + +               G   T+  LS +   D++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-------------FQGKHFTLLRLSSITLQDMN 196

Query: 216 QNRILSIPS-SISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCV 270
           +  +      +     S+    +  N      A+        +K+ +L L ++       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                +    D  N +  GL       + ++   L+ + +  L  S       +    L 
Sbjct: 257 GHTNFK----DPDNFTFKGLEA-----SGVKTCDLSKSKIFALLKS-----VFSHFTDLE 302

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSR 389
                                         +L+L    ++ I     W    + KL+LS+
Sbjct: 303 ------------------------------QLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
           N +  +   +  +   L+ L LS N I+   D     L +L  L LD N L+ VP   F 
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 449 DIPMLQILDLSYN 461
            +  LQ + L  N
Sbjct: 393 RLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (257), Expect = 1e-23
 Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 10/184 (5%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN 461
           A +  + LS N I +  +   + L  L  LK++      V  +  F+ +  L IL L YN
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 462 -IASLPENPPFSSLPHLQELYLRRMQLREA--PTDILR-LQQLRILDLSQNSLQSIPEG- 516
               L     F+ L +L+ L L +  L  A    +  + L  L +L L  N+++ I    
Sbjct: 90  QFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 517 -FKNLTSLTELDLSDNNISALPPE--LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVL 573
            F N+     LDL+ N + ++  E  L         LRL    L+ +    L        
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 574 KYLK 577
               
Sbjct: 209 FKNT 212

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.7 bits (246), Expect = 4e-22
 Identities = 48/340 (14%), Positives = 99/340 (29%), Gaps = 47/340 (13%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               C +        N  L  +P        +  + L+ N +  L  +  +      L++
Sbjct: 4   GTSECSVIGYNAICINRGLHQVPELP---AHVNYVDLSLNSIAELNETSFSRLQ--DLQF 58

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
           L+  + +         + +     + L      L L+      + +  +     +  L L
Sbjct: 59  LK--VEQQTPG--LVIRNNTFRGLSSL----IILKLDYNQFLQLETGAFNGLANLEVLTL 110

Query: 388 SRNSIQE--LPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ ++    L         SL+ L+L  N IK   P +   ++     L L  N ++ + 
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 444 SDGFK----------DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD 493
            +              +  + + D++       +         +  L L     +E+   
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230

Query: 494 I--------------LRLQQLRILDLSQNSLQSIPEG-FKNL--TSLTELDLSDNNISAL 536
                          L             + +      FK L  + +   DLS + I AL
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290

Query: 537 PPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
              +      L+ L L  N +  I        T   L  L
Sbjct: 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH--LLKL 328

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  172 bits (438), Expect = 9e-47
 Identities = 76/314 (24%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+    L  +P+ +  +               +  L++  NN+  L         L  
Sbjct: 44  VLNVGESGLTTLPDCLPAH---------------ITTLVIPDNNLTSLPALPPE---LRT 85

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           L VS N+L+ LP     L  L         +  +P      + L K     NQL  LP  
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVL 139

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                 L +   S+N + SLP      S++ KL    N+LT L        + L EL  S
Sbjct: 140 PP---GLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPMLP----SGLQELSVS 189

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N L  +P     L    +L  + NR+ S+P+  S    L E  +  N L++LP    +L
Sbjct: 190 DNQLASLPTLPSELY---KLWAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSEL 243

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
            +   L +  N+L    +    L    L +  N L+ LP  +  +++   + L GNPL  
Sbjct: 244 KE---LMVSGNRLTSLPMLPSGLL--SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298

Query: 313 LRSSLVNGPTPALL 326
                +   T A  
Sbjct: 299 RTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  158 bits (400), Expect = 1e-41
 Identities = 95/460 (20%), Positives = 156/460 (33%), Gaps = 100/460 (21%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
             W  A   ++       ++K++  L N     VLNV  + L+ LP  +     + +L +
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNG--NAVLNVGESGLTTLPDCLPAH--ITTLVI 68

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N++  +P        L   + S NQL  LP      L LS F      + +LP  L  
Sbjct: 69  PDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL-- 123

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
                KL + GN+LT L          L EL  S N L  +P     L +L     + N+
Sbjct: 124 ----CKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPALPSELCKL---WAYNNQ 172

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278
           + S+P   S    L E  + +N L++LP    +L KL                       
Sbjct: 173 LTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKL----------------------- 206

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                NN L+ LP        L++L+++GN L +L         P L   L+        
Sbjct: 207 --WAYNNRLTSLPALPSG---LKELIVSGNRLTSL---------PVLPSELK-------- 244

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL + G  L+++P        +  L + RN +  LP  
Sbjct: 245 ----------------------ELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPES 279

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
           L   +S  T+ L  N + +     L  ++S               +   ++   L +   
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

Query: 459 SYNIASLPENPP-------FSSLPHLQELYLRRMQLREAP 491
            + + +    P        F    +     L   +L E  
Sbjct: 340 DWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  151 bits (384), Expect = 2e-39
 Identities = 80/363 (22%), Positives = 132/363 (36%), Gaps = 77/363 (21%)

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
            +    L++ ++ + ++P  +     +    + +N L++LPA   +L    TL++  NQL
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELR---TLEVSGNQL 93

Query: 266 KEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
               V    L  LS+       L  LP      + L KL + GN L +L         P 
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSL---------PV 138

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           L   L+                              ELS+    L+++P+      E+ K
Sbjct: 139 LPPGLQ------------------------------ELSVSDNQLASLPALP---SELCK 165

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L    N +  LP   S    LQ L +S N++   P       S L  L   NN L  +P+
Sbjct: 166 LWAYNNQLTSLPMLPSG---LQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA 218

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503
                   L+ L +S N + SLP          L+EL +   +L   P        L  L
Sbjct: 219 L----PSGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPMLP---SGLLSL 266

Query: 504 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRT 563
            + +N L  +PE   +L+S T ++L  N +S    +       + +      P+      
Sbjct: 267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ---ALREITSAPGYSGPIIRFDMA 323

Query: 564 ILD 566
              
Sbjct: 324 GAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  149 bits (378), Expect = 1e-38
 Identities = 77/346 (22%), Positives = 116/346 (33%), Gaps = 73/346 (21%)

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
               A   +G + L+ LP  L     + TL +  N L        +LR   L++S N L+
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPALPPELR--TLEVSGNQLT 94

Query: 289 GLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL 348
            LP     +  L         L  L S L                               
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLPALPSGL------------------------------- 123

Query: 349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL 408
                       +L + G  L+++P        + +L +S N +  LP   S    L  L
Sbjct: 124 -----------CKLWIFGNQLTSLPVLP---PGLQELSVSDNQLASLPALPSE---LCKL 166

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPE 467
               N++   P       S L  L + +N L  +P+        L  L    N + SLP 
Sbjct: 167 WAYNNQLTSLPM----LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPA 218

Query: 468 NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELD 527
                    L+EL +   +L   P       +L+ L +S N L S+P      + L  L 
Sbjct: 219 -----LPSGLKELIVSGNRLTSLPVLP---SELKELMVSGNRLTSLPM---LPSGLLSLS 267

Query: 528 LSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVL 573
           +  N ++ LP  L  L  S   + L+GNPL       L   T A  
Sbjct: 268 VYRNQLTRLPESLIHL-SSETTVNLEGNPLSERTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  145 bits (367), Expect = 3e-37
 Identities = 86/412 (20%), Positives = 133/412 (32%), Gaps = 75/412 (18%)

Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
                         +  + L+V  + LT L + L A    +T L+   N L  +P     
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAH---ITTLVIPDNNLTSLPALPPE 82

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           L  L   ++  N++ S+P    G   L+ F      L ALP      S L  L +  NQL
Sbjct: 83  LRTL---EVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQL 133

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               V    L+   L +S+N L+ LP    +   L KL    N L +L         P L
Sbjct: 134 TSLPVLPPGLQ--ELSVSDNQLASLPALPSE---LCKLWAYNNQLTSL---------PML 179

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
              L+                              ELS+    L+++P+      E+ KL
Sbjct: 180 PSGLQ------------------------------ELSVSDNQLASLPTLP---SELYKL 206

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
               N +  LP   S    L+ LI+S N++   P       S L  L +  N L  +P  
Sbjct: 207 WAYNNRLTSLPALPSG---LKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPML 259

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
                  L  L +  N +  LPE+     L     + L    L E     L  +++    
Sbjct: 260 ----PSGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEGNPLSERTLQAL--REITSAP 311

Query: 505 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
                +        +    T           +P   G   P+ +        
Sbjct: 312 GYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQED 363

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  167 bits (424), Expect = 2e-45
 Identities = 92/483 (19%), Positives = 177/483 (36%), Gaps = 26/483 (5%)

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP 153
            +D S N ++ +P ++   T     + S N + EL +S +     L     S+N I  L 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 154 ED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLI 210
                   ++  LD+  NKL  +S         L  L  S N  + +P     G++S+L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK---- 266
            L L    +           ++++  +          +   L    T  LH         
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            + ++     ++ L+LSN        +     ++   L T   L  L  + +     + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 327 KYL----RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN---LSAIPSEIWEA 379
           + L     + +     S      +           + K LS+  +         S I+E 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 380 -GEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
              +   + + +  + +     S  +    L  S N + D        L+ L  L L  N
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358

Query: 438 PLRQVP--SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
            L+++   ++    +  LQ LD+S N ++   +    S    L  L +    L +     
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 554
           L   ++++LDL  N ++SIP+    L +L EL+++ N + ++P  +     SLQ + L  
Sbjct: 419 L-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT 477

Query: 555 NPL 557
           NP 
Sbjct: 478 NPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  146 bits (369), Expect = 5e-38
 Identities = 90/460 (19%), Positives = 156/460 (33%), Gaps = 48/460 (10%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           D S N L  +P  L +   + +   S N I+ L   D+   SK+  L +  N++  L  +
Sbjct: 6   DRSKNGLIHVPKDLSQKTTILNI--SQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
           +      L  L  S N L  +         L  LDL  N   ++P               
Sbjct: 64  VFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP--------------- 106

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLRLSVLDLSNNSLSGLPPEIG-- 295
                 +  E G +S+L  L L +  L++  V     L +S + L      G   +    
Sbjct: 107 ------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 296 ---KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
                 +L  +  T      +    V       L  ++  L +N+ S   +    L T  
Sbjct: 161 QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP 220

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE------LSSCASLQ 406
              ++T   +     +   I   +W    +    +S   +Q            +S  +L 
Sbjct: 221 KLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASL 465
              +  +        I    S+++      +  R V       I     LD S N +   
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 466 PENPPFSSLPHLQELYLRRMQLREAPTDI---LRLQQLRILDLSQNSLQSI--PEGFKNL 520
                   L  L+ L L+  QL+E         +++ L+ LD+SQNS+            
Sbjct: 340 VFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
            SL  L++S N ++        L P ++ L L  N ++SI
Sbjct: 399 KSLLSLNMSSNILTDTIF--RCLPPRIKVLDLHSNKIKSI 436

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  134 bits (340), Expect = 4e-34
 Identities = 100/527 (18%), Positives = 185/527 (35%), Gaps = 81/527 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
           LN+S   + ++      +               L+ LI++HN I+ L     +    L  
Sbjct: 26  LNISQNYISELWTSDILSL------------SKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKELP 130
           L++SHNKL ++         LK LD+SFN+   +P   E G+ + L     S+  L++  
Sbjct: 74  LDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                 LN+S             ED      +   + E   +   +N             
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEG---LQDFNTESLHIVFPTNKE----------- 177

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
               +L+       S+  +  L+L   + +   +  S   S+      N  LS L     
Sbjct: 178 -FHFILD------VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           + +    + +                +    +SN  L G           R    +G  L
Sbjct: 231 ETTWNSFIRILQLVW--------HTTVWYFSISNVKLQGQLD-------FRDFDYSGTSL 275

Query: 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370
           + L                  ++  +      +   ++ +     + T     +  M   
Sbjct: 276 KALS---------------IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320

Query: 371 AIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA--ILTSLS 427
           +  S          LD S N + +   E       L+TLIL  N++K+      + T + 
Sbjct: 321 SKIS------PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486
           SL  L +  N +      G       L  L++S N   L +       P ++ L L   +
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN--ILTDTIFRCLPPRIKVLDLHSNK 432

Query: 487 LREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 532
           ++  P  +++L+ L+ L+++ N L+S+P+G F  LTSL ++ L  N 
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.6 bits (248), Expect = 3e-22
 Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 12/212 (5%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPD 420
           +      L  +P ++  + + T L++S+N I EL    + S + L+ LI+S N+I+    
Sbjct: 5   VDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
           ++      L  L L +N L ++      +   L+ LDLS+N   +LP    F ++  L+ 
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNMSQLKF 119

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDL-----SDNNIS 534
           L L    L ++    +    +  + L         E  + L       L     ++    
Sbjct: 120 LGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFH 179

Query: 535 ALPPELGLLEPSLQALRLDGNPLRSIRRTILD 566
            +         +L+   +      +     L 
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.6 bits (204), Expect = 7e-17
 Identities = 55/389 (14%), Positives = 110/389 (28%), Gaps = 64/389 (16%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +D  +N ++ +P  +S         +  N +S L    +  LSKL  L +  N+++   +
Sbjct: 5   VDRSKNGLIHVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI 62

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +    L  LDLS+N L  +         L+ L L+ N    L       P       
Sbjct: 63  SVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDAL-------PICKEFGN 113

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           +                       ++L    K L L   +L            I+K+ L 
Sbjct: 114 M-----------------------SQL----KFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD---------NNPL 439
                    +        T  L      +     +  +S  +   L+         +N  
Sbjct: 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKC 206

Query: 440 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFS-----SLPHLQELYLRRMQL------R 488
               S   K     ++ +L+ N      N             +    +  ++L      R
Sbjct: 207 SYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR 266

Query: 489 EAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSL 547
           +       L+ L I  +  +         ++  +++   + + +    +           
Sbjct: 267 DFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326

Query: 548 QALRLDGNPLRSIRRTILDRGTKAVLKYL 576
             L    N L           T+  L+ L
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTE--LETL 353

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELHMLKS---LDVSF 100
                L  ++N +     +   +L  L  L +  N+L EL         +KS   LD+S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 101 NSIMKIPDEIG--SATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITSLPEDL 156
           NS+     +       +L+  + SSN L +      RCL   +      +N I S+P+ +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---RCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
                + +L+V  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 502 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 561
           ++D S+N L  +P+        T L++S N IS L     L    L+ L +  N ++ + 
Sbjct: 4   LVDRSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 562 RTILDRGTKAVLKYL 576
            ++     +  L+YL
Sbjct: 62  ISVFKFNQE--LEYL 74

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  162 bits (413), Expect = 5e-45
 Identities = 66/371 (17%), Positives = 122/371 (32%), Gaps = 60/371 (16%)

Query: 205 SLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
           +L+    +    + +  +P+++      +    + +  +  +          +  L +  
Sbjct: 43  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF 102

Query: 263 NQLKEYCVEACQLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSL 317
           N ++   +     +    L+VL L  N LS LP  I      L  L ++ N L  +    
Sbjct: 103 NAIRY--LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                      L+                               L L    L+ +   + 
Sbjct: 161 FQA-----TTSLQ------------------------------NLQLSSNRLTHVDLSLI 185

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
            +  +   ++S N +  L   ++    ++ L  S N I      +   L+ L    L +N
Sbjct: 186 PS--LFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK---LQHN 236

Query: 438 PLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR 496
            L         + P L  +DLSYN +  +  +P F  +  L+ LY+   +L         
Sbjct: 237 NLTDTAW--LLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALNLYGQP 293

Query: 497 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
           +  L++LDLS N L  +         L  L L  N+I  L         +L+ L L  N 
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL--STH-HTLKNLTLSHND 350

Query: 557 LRSIRRTILDR 567
                   L R
Sbjct: 351 WDCNSLRALFR 361

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  140 bits (356), Expect = 5e-37
 Identities = 81/304 (26%), Positives = 121/304 (39%), Gaps = 29/304 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            LNL++  + ++    +              A  +QKL +  N I  L     +N+PLLT
Sbjct: 73  LLNLNDLQIEEIDTYAFAY------------AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQLKEL 129
           VL +  N LS LP  I      L +L +S N++ +I D+   A T+L     SSN+L  +
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              L    +L     S N +++L         + +LD   N + V+   +      LT L
Sbjct: 181 D--LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVE---LTIL 231

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE 248
               N L      + +   L+ +DL  N +  I          L   Y+ NN L AL   
Sbjct: 232 KLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 290

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307
              +  L  LDL  N L        Q  RL  L L +NS+  L        TL+ L L+ 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLST--HHTLKNLTLSH 348

Query: 308 NPLR 311
           N   
Sbjct: 349 NDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  138 bits (349), Expect = 4e-36
 Identities = 71/430 (16%), Positives = 146/430 (33%), Gaps = 81/430 (18%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
             +                        +  K++ L +  N L  + ++   + T L  L 
Sbjct: 134 RGI----------------------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
            S N L  +   +  +  L   ++  N + ++   I    ++ E    +N+++ +   + 
Sbjct: 172 LSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRGPV- 224

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
              +L  L L  N L +         L  +DLS N L  +      KM  L +L ++ N 
Sbjct: 225 -NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           L  L            +  L+                               L L   +L
Sbjct: 284 LVALNLYGQP------IPTLK------------------------------VLDLSHNHL 307

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
             +     +   +  L L  NSI  L    S+  +L+ L LS N      +++     ++
Sbjct: 308 LHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSHNDWD--CNSLRALFRNV 363

Query: 430 SCLKLDNNPL 439
           +   +D+   
Sbjct: 364 ARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  119 bits (301), Expect = 1e-29
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 24/277 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L L    L  +P  ++ N               L  L +++NN+E++++D  +    L 
Sbjct: 121 VLVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +S N+L+ +   +  +  L   +VS+N +  +   I    A+ + D S N +  +  
Sbjct: 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRG 222

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            +   + L+  K  +N +T     L +   + ++D+  N+L  +  +       L  L  
Sbjct: 223 PV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           S N L  +      +  L  LDL  N +L +  +      L   Y+ +N++  L   L  
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 337

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L  L L  N      + A    ++   + +    
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 4/150 (2%)

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
           D+ L        + +D              +   +I+    + +  LP      S   ++
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA-LLDSFRQVE 72

Query: 479 ELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 536
            L L  +Q+ E  T        ++ L +  N+++ +P   F+N+  LT L L  N++S+L
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 132

Query: 537 PPELGLLEPSLQALRLDGNPLRSIRRTILD 566
           P  +    P L  L +  N L  I      
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 2/118 (1%)

Query: 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSL 510
           +   + +      +       +L + + +  +   +R+ P  +L   +Q+ +L+L+   +
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 511 QSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 567
           + I    F    ++ +L +  N I  LPP +    P L  L L+ N L S+ R I   
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  164 bits (418), Expect = 7e-45
 Identities = 84/353 (23%), Positives = 138/353 (39%), Gaps = 48/353 (13%)

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-L 249
            +     +PE I   +    LDL +NRI ++     +    L E  +  N +SA+     
Sbjct: 19  HRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLT 306
             L  L TL L SN+LK   +        L+ LD+S N +  L   +   +  L+ L + 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +     +G     L  L                               +L+LE 
Sbjct: 137 DNDLVYISHRAFSG-----LNSLE------------------------------QLTLEK 161

Query: 367 MNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILT 424
            NL++IP+E       +  L L   +I  +          L+ L +S     D       
Sbjct: 162 CNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
              +L+ L + +  L  VP    + +  L+ L+LSYN I+++  +     L  LQE+ L 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS-MLHELLRLQEIQLV 280

Query: 484 RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534
             QL        R L  LR+L++S N L ++ E  F ++ +L  L L  N ++
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  156 bits (396), Expect = 7e-42
 Identities = 67/339 (19%), Positives = 125/339 (36%), Gaps = 52/339 (15%)

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI 294
                A+P  +   ++   LDL  N++K   +   +      L  L+L+ N +S + P  
Sbjct: 20  RKRFVAVPEGI--PTETRLLDLGKNRIKT--LNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 295 -GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
              +  LR L L  N L+ +   +  G     L  L                        
Sbjct: 76  FNNLFNLRTLGLRSNRLKLIPLGVFTG-----LSNLT----------------------- 107

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
                  +L +    +  +   +++    +  L++  N +  +     S   SL+ L L 
Sbjct: 108 -------KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE 160

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 471
           +  +   P   L+ L  L  L+L +  +  +    FK +  L++L++S+        P  
Sbjct: 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC 220

Query: 472 SSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 529
               +L  L +    L   P   +R L  LR L+LS N + +I       L  L E+ L 
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 530 DNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 566
              ++ + P    GL    L+ L + GN L ++  ++  
Sbjct: 281 GGQLAVVEPYAFRGL--NYLRVLNVSGNQLTTLEESVFH 317

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  149 bits (378), Expect = 2e-39
 Identities = 68/302 (22%), Positives = 114/302 (37%), Gaps = 25/302 (8%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  +   +         +P  I   T  R L L  N ++TL            L+ L   
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFP--HLEEL--E 62

Query: 333 LPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRN 390
           L EN  S        +L  +        + L L    L  IP  +      +TKLD+S N
Sbjct: 63  LNENIVSAVEPGAFNNLFNL--------RTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 114

Query: 391 SIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKD 449
            I  L   +     +L++L +  N +        + L+SL  L L+   L  +P++    
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSH 174

Query: 450 IPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRM-QLREAPTDILRLQQLRILDLSQ 507
           +  L +L L +  I ++ +   F  L  L+ L +     L     + L    L  L ++ 
Sbjct: 175 LHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233

Query: 508 NSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTI 564
            +L ++P    ++L  L  L+LS N IS +   +   L    LQ ++L G  L  +    
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL--LRLQEIQLVGGQLAVVEPYA 291

Query: 565 LD 566
             
Sbjct: 292 FR 293

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  132 bits (334), Expect = 2e-33
 Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 30/323 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           ++    +    VP  +                 + + L L  N I+ L +D   + P L 
Sbjct: 15  AVLCHRKRFVAVPEGI---------------PTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L ++ N +S +   A   L  L++L +  N +  IP  +    + L K D S N++  L
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              + + L NL   +  +N +  +     +  + + +L +E   LT +    ++    L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSAL 245
            L      +N + + +   L RL  L++     L  +  +     +L    + +  L+A+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI-GKMTT 299
           P   +  L  L  L+L  N +    +E   L    RL  + L    L+ + P     +  
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 300 LRKLLLTGNPLRTLRSSLVNGPT 322
           LR L ++GN L TL  S+ +   
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  111 bits (280), Expect = 2e-26
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 20/261 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
           +L L +  L+ +P  V+                 L KL ++ N I  L + + ++L  L 
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSN------------LTKLDISENKIVILLDYMFQDLYNLK 131

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L V  N L  +   A   L+ L+ L +   ++  IP E       L+        +  +
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 130 PS-SLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              S  R   L   + +    + ++  +      ++ L +    LT +    +     L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
            L  S N ++ +  ++   L RL  + L   ++  +      G   L    +  N L+ L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 246 PAEL-GKLSKLGTLDLHSNQL 265
              +   +  L TL L SN L
Sbjct: 312 EESVFHSVGNLETLILDSNPL 332

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  158 bits (402), Expect = 1e-42
 Identities = 71/502 (14%), Positives = 150/502 (29%), Gaps = 47/502 (9%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKI-PDEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSS--ISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I ++  +   +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +     L    L GN                +    +  + +            L     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK------------LTGQNE 280

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN 413
                             +P+    A  +  L    +++       +     +       
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPF--ADRLIALKRKEHALLSGQGSETERLECERE----- 333

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS 473
                      + +    +       R V             L+          +    +
Sbjct: 334 -----------NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

Query: 474 LPHLQELYLRRMQLREAPTDILRLQQLRILD--LSQNSLQSIPEGFKNLTSLTELDLSDN 531
              L     + +   E          L++L   + +     + +      ++ + D+  +
Sbjct: 383 HAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQH 442

Query: 532 NISALPPELGLLEPSLQALRLD 553
             + L  E   L+       L 
Sbjct: 443 KETQLAEENARLKKLNGEADLA 464

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  157 bits (399), Expect = 3e-42
 Identities = 60/420 (14%), Positives = 131/420 (31%), Gaps = 51/420 (12%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L   
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
                                          + L+L+   +  +  ++    ++  LDLS
Sbjct: 172 -------------------------------EHLNLQYNFIYDVKGQVV-FAKLKTLDLS 199

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +  + PE  S A +  + L  NK+     A+     +L    L  N         F 
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI------LRLQQLRI 502
                ++  ++                     +       + P         L+ ++  +
Sbjct: 259 S-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHAL 317

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRR 562
           L    +  + +    +N     E+D        +  ++ L + +   L      L     
Sbjct: 318 LSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  122 bits (307), Expect = 6e-30
 Identities = 61/385 (15%), Positives = 108/385 (28%), Gaps = 74/385 (19%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257
            + E   + +R     +  + +    +S+                            +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL----------------------RQSAWNVKE 38

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
           LDL  N L +          +L +L+LS+N L      +  ++TLR L L  N ++ L  
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
                  P++                                  + L     N+S +   
Sbjct: 96  ----LVGPSI----------------------------------ETLHAANNNISRVSCS 117

Query: 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLK 433
             +      + L+ N I  L   +    + +Q L L  N+I       +  S  +L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
           L  N +  V          L+ LDLS N +A +     F S   +  + LR  +L     
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

Query: 493 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 552
            +   Q L   DL  N             +     ++   +  L  +             
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 553 DGNPLRSIRRTILDRGTKAVLKYLK 577
                  +     DR      K   
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHA 316

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.8 bits (233), Expect = 2e-20
 Identities = 46/292 (15%), Positives = 85/292 (29%), Gaps = 44/292 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +K  +     L  L++S NKL+ +         +  + +  N ++ I
Sbjct: 171 LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +  +  L  FD   N           C  L DF + N  + ++ +            
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH--------CGTLRDFFSKNQRVQTVAK------------ 269

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
                +  L+       T+ T           +P       RLI L   ++ +LS     
Sbjct: 270 ---QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF--ADRLIALKRKEHALLSGQ--- 321

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSN 284
                        +    L  E    ++   +D    Q +    +          L+   
Sbjct: 322 ------------GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 285 NSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
            +L             L   L        L+ +        LL+ +  R  E
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEE 421

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  151 bits (385), Expect = 2e-41
 Identities = 68/417 (16%), Positives = 151/417 (36%), Gaps = 77/417 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              L      I ++     +L       +    ++++     EL  +  L V+   +  I
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I   T L   + + NQ+ ++   L   + L++     N IT +   L + + + +L 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELY 116

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  + ++ +S                          + +L+++  L+L  N  LS  S +
Sbjct: 117 LNEDNISDISP-------------------------LANLTKMYSLNLGANHNLSDLSPL 151

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVLDLSN 284
           S    L    +  + +  +   +  L+ L +L L+ NQ+++  +     L  L       
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYV 208

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           N ++ + P +  MT L  L +  N +  L S L N      L  L               
Sbjct: 209 NQITDITP-VANMTRLNSLKIGNNKITDL-SPLAN------LSQL--------------- 245

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
                            L +    +S I + + +  ++  L++  N I ++   L++ + 
Sbjct: 246 ---------------TWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISV-LNNLSQ 288

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           L +L L+ N++ +    ++  L++L+ L L  N +  +       +  +   D +  
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  148 bits (376), Expect = 4e-40
 Identities = 76/398 (19%), Positives = 148/398 (37%), Gaps = 56/398 (14%)

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
           + L      +  +     A        +  K  +     T   L  + +L +   ++ SI
Sbjct: 3   ATLATLPAPINQIFP--DADLAEGIRAVLQKASVTD-VVTQEELESITKLVVAGEKVASI 59

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
              I    +L    +  N ++ +   L  L KL  L + +N++ +         L  L L
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           + +++S + P +  +T +  L L  N   +  S L N      +  L             
Sbjct: 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSN------MTGL------------- 157

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                              L++    +  +   I    ++  L L+ N I+++ P L+S 
Sbjct: 158 -----------------NYLTVTESKVKDVT-PIANLTDLYSLSLNYNQIEDISP-LASL 198

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            SL       N+I D     + +++ L+ LK+ NN +  +      ++  L  L++  N 
Sbjct: 199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQ 254

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNL 520
           I+ +        L  L+ L +   Q+ +  + +  L QL  L L+ N L +   E    L
Sbjct: 255 ISDIN---AVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558
           T+LT L LS N+I+ + P   L    + +       ++
Sbjct: 311 TNLTTLFLSQNHITDIRPLASL--SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (320), Expect = 2e-32
 Identities = 64/352 (18%), Positives = 124/352 (35%), Gaps = 51/352 (14%)

Query: 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268
              L      I  I    +         +   +++ +     +L  +  L +   ++   
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
                   L  L+L+ N ++ + P +  +  L  L +  N +  + S+L N      L  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-SALQN------LTN 111

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L                              +EL L   N+S I   +    ++  L+L 
Sbjct: 112 L------------------------------RELYLNEDNISDISP-LANLTKMYSLNLG 140

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N        LS+   L  L ++ +K+KD     + +L+ L  L L+ N +  +      
Sbjct: 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LA 196

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508
            +  L       N   + +  P +++  L  L +   ++ +    +  L QL  L++  N
Sbjct: 197 SLTSLHYFTAYVN--QITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTN 253

Query: 509 SLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
            +  I    K+LT L  L++  N IS +     L    L +L L+ N L + 
Sbjct: 254 QISDIN-AVKDLTKLKMLNVGSNQISDISVLNNL--SQLNSLFLNNNQLGNE 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (314), Expect = 1e-31
 Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L++L L  +NI  +   L NL  +  LN+  N      + +  +  L  L V+ + +  +
Sbjct: 112 LRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I + T L     + NQ++++ S L    +L  F A  N IT +   +A+ ++++ L 
Sbjct: 171 T-PIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK+T LS   +A+ + LT L    N ++ +   +  L++L  L++  N+I  I S +
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDI-SVL 283

Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +    L   ++ NN L     E +G L+ L TL L  N + +    A   ++   D +N 
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343

Query: 286 SLS 288
            + 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  118 bits (297), Expect = 2e-29
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L L  N+       L N+  L  L V+ +K+ ++   I  L  L SL +++N I  I
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI 192

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S T+L  F    NQ+ ++   +     L+  K  NN IT L   LA+ S+++ L+
Sbjct: 193 S-PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLE 249

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSS 225
           +  N+++ ++   +   T L  L    N ++ +   + +LS+L  L L+ N++ +     
Sbjct: 250 IGTNQISDINA--VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
           I G  +L   ++  N ++ +   L  LSK+ + D  +  +K+
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  156 bits (395), Expect = 4e-41
 Identities = 73/432 (16%), Positives = 134/432 (31%), Gaps = 75/432 (17%)

Query: 143 KASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           +   N     PE     S +    V     + + + ++   +  +T              
Sbjct: 4   QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-------------- 49

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLD 259
               L+    +    + +  +P+++      +    + +  +  +          +  L 
Sbjct: 50  ----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105

Query: 260 LHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSS 316
           +  N ++       Q    L+VL L  N LS LP  I      L  L ++ N L  +   
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
                       L+                               L L    L+ +   +
Sbjct: 166 TFQA-----TTSLQ------------------------------NLQLSSNRLTHVDLSL 190

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
                +   ++S N +  L   ++    ++ L  S N I      +   L+ L    L +
Sbjct: 191 IP--SLFHANVSYNLLSTLAIPIA----VEELDASHNSINVVRGPVNVELTILK---LQH 241

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
           N L         + P L  +DLSYN +  +  +P F  +  L+ LY+   +L        
Sbjct: 242 NNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNNRLVALNLYGQ 298

Query: 496 RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 555
            +  L++LDLS N L  +         L  L L  N+I  L         +L+ L L  N
Sbjct: 299 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSHN 355

Query: 556 PLRSIRRTILDR 567
                    L R
Sbjct: 356 DWDCNSLRALFR 367

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  141 bits (356), Expect = 7e-36
 Identities = 112/547 (20%), Positives = 188/547 (34%), Gaps = 45/547 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
            LNL++  + ++    +              A  +QKL +  N I  L   + +N+PLLT
Sbjct: 79  LLNLNDLQIEEIDTYAFAY------------AHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL +  N LS LP  I      L +L +S N++ +I D+   + T+L     SSN+L  +
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
             SL    +L     S N +++L         + +LD   N + V+   +      LT L
Sbjct: 187 DLSLIP--SLFHANVSYNLLSTLA----IPIAVEELDASHNSINVVRGPVNVE---LTIL 237

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE 248
               N L      + +   L+ +DL  N +  I          L   Y+ NN L AL   
Sbjct: 238 KLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 307
              +  L  LDL  N L        Q  RL  L L +NS+  L        TL+ L L+ 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL--STHHTLKNLTLSH 354

Query: 308 NPLRT--LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL- 364
           N      LR+   N   PA+    +    + +       KE       RL       S+ 
Sbjct: 355 NDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVV 414

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
           E +  +       +     +      + Q   P   +      +   R +++   +  + 
Sbjct: 415 EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQ 474

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484
               L  L  + +   +        +                 N  F+ L   Q   LR 
Sbjct: 475 QEQLLQGLHAEIDTNLRRYRLPKDGLARSSDN----------LNKVFTHLKERQAFKLRE 524

Query: 485 MQLREAPTDILRLQQLRILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPELGL 542
            Q R    D  + ++   L+    +L+   +    K      E  L    +  L  +   
Sbjct: 525 TQARRTEAD-AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583

Query: 543 LEPSLQA 549
              + + 
Sbjct: 584 NPDTRRV 590

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  133 bits (337), Expect = 2e-33
 Identities = 92/527 (17%), Positives = 187/527 (35%), Gaps = 50/527 (9%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
               +  +     +VY  F++           + + +   ++ + KL    L +   + +
Sbjct: 27  CVFYDVHIDMQTQDVYFGFEDIT-------LNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 73  LNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
           LN++  ++ E+   A    H ++ L + FN+I  +P  +  +   L       N L  LP
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139

Query: 131 SSL-GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
             +      L+    SNN +  + +D     + +  L +  N+LT +  +LI S   L  
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFH 196

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
              S NLL     T+     +  LD   N I  +   +     L    + +N L+     
Sbjct: 197 ANVSYNLL----STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAW- 249

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           L     L  +DL  N+L++          RL  L +SNN L  L      + TL+ L L+
Sbjct: 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 309

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            N L  +  +         L+ L   L  N           ++T+      T K L+L  
Sbjct: 310 HNHLLHVERNQPQFDR---LENL--YLDHNS----------IVTLKLSTHHTLKNLTLSH 354

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
            +                 +++R ++ +          L+  +  +   K + D +L  +
Sbjct: 355 NDWDCNSLRALFR------NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486
           +  S +      +++          +  +  LS+ I      P   +     E+   R +
Sbjct: 409 ALTSVV----EKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAE 464

Query: 487 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 533
           +++   + ++ +QL +  L      ++         L     + N +
Sbjct: 465 VQQLTNEQIQQEQL-LQGLHAEIDTNLRRYRLPKDGLARSSDNLNKV 510

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  147 bits (372), Expect = 7e-40
 Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (340), Expect = 2e-35
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 15/260 (5%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIP-DEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I  ++     +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTL 313
           +     L    L GN     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  131 bits (332), Expect = 2e-34
 Identities = 54/322 (16%), Positives = 92/322 (28%), Gaps = 52/322 (16%)

Query: 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPE-IGKMTTL 300
           A+       ++     +  + LK+      Q    +  LDLS N LS +    +   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
             L L+ N L               L  LR                              
Sbjct: 61  ELLNLSSNVLYET-------LDLESLSTLR------------------------------ 83

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 420
            L L    +  +         I  L  + N+I  +          + + L+ NKI    D
Sbjct: 84  TLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRD 137

Query: 421 AILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
                 S +  L L  N +  V           L+ L+L YN I  +           L+
Sbjct: 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---VVFAKLK 194

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L L   +L     +      +  + L  N L  I +  +   +L   DL  N       
Sbjct: 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 539 ELGLLEPSLQALRLDGNPLRSI 560
                + + +   +    ++ +
Sbjct: 255 RDFFSK-NQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 3e-32
 Identities = 54/362 (14%), Positives = 114/362 (31%), Gaps = 49/362 (13%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L   
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--- 171

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
                                          + L+L+   +  +  ++    ++  LDLS
Sbjct: 172 -------------------------------EHLNLQYNFIYDVKGQV-VFAKLKTLDLS 199

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +  + PE  S A +  + L  NK+     A+     +L    L  N         F 
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 449 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQN 508
                ++  ++                     +       + P         R++ L  +
Sbjct: 259 S-KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHH 313

Query: 509 SL 510
             
Sbjct: 314 HH 315

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 3e-32
 Identities = 60/375 (16%), Positives = 107/375 (28%), Gaps = 74/375 (19%)

Query: 198 GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGT 257
            + E   + +R     +  + +    +S+                            +  
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL----------------------RQSAWNVKE 38

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
           LDL  N L +          +L +L+LS+N L      +  ++TLR L L  N ++ L  
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-- 95

Query: 316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
                  P++                                  + L     N+S +   
Sbjct: 96  ----LVGPSI----------------------------------ETLHAANNNISRVSCS 117

Query: 376 IWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLK 433
             +      + L+ N I  L   +    + +Q L L  N+I       +  S  +L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
           L  N +  V          L+ LDLS N +A +     F S   +  + LR  +L     
Sbjct: 176 LQYNFIYDVKGQVV--FAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRNNKLVLIEK 231

Query: 493 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 552
            +   Q L   DL  N             +     ++   +  L  +             
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 553 DGNPLRSIRRTILDR 567
                  +     DR
Sbjct: 292 GAYCCEDLPAPFADR 306

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  149 bits (378), Expect = 1e-39
 Identities = 62/291 (21%), Positives = 104/291 (35%), Gaps = 44/291 (15%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +  +   LS +P  I   +  R L L  N ++ +++          L +L   
Sbjct: 52  CSNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRH-----LHHLE-- 102

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 103 ----------------------------VLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQN 508
           +  L+ L+L     ++ + P  + L  L+EL +      E        L  L+ L +  +
Sbjct: 195 LFNLKYLNLGMC--NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 509 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558
            +  I    F  L SL EL+L+ NN+S+LP +L      L  L L  NP  
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  141 bits (357), Expect = 1e-36
 Identities = 63/219 (28%), Positives = 99/219 (45%), Gaps = 11/219 (5%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +   ++ L+L   N+  I ++ +     +  L L RNSI+++     +  ASL TL L  
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPP 470
           N +   P      LS L  L L NNP+  +PS  F  +P L  LDL     +  + E   
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA- 191

Query: 471 FSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 529
           F  L +L+ L L    +++ P  +  L  L  L++S N    I  G F  L+SL +L + 
Sbjct: 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 530 DNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 566
           ++ +S +      GL   SL  L L  N L S+   +  
Sbjct: 251 NSQVSLIERNAFDGL--ASLVELNLAHNNLSSLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  133 bits (337), Expect = 5e-34
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 9/187 (4%)

Query: 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            + +K+  +R  + E+P  +   ++ + L L  N I+         L  L  L+L  N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 440 RQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-L 497
           RQ+    F  +  L  L+L  N +  +P    F  L  L+EL+LR   +   P+     +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGA-FEYLSKLRELWLRNNPIESIPSYAFNRV 170

Query: 498 QQLRILDLSQ-NSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 555
             L  LDL +   L+ I EG F+ L +L  L+L   NI  +P    L    L+ L + GN
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPL--VGLEELEMSGN 228

Query: 556 PLRSIRR 562
               IR 
Sbjct: 229 HFPEIRP 235

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  117 bits (295), Expect = 2e-28
 Identities = 61/284 (21%), Positives = 115/284 (40%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  I    +     +  N +  + A+    L  L  L L  N +
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111

Query: 266 KEYCVEA-CQL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           ++  V A   L  L+ L+L +N L+ +P      ++ LR+L L  NP+ ++ S   N   
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR-- 169

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  L                                L L  +  L  I    +E   
Sbjct: 170 ---VPSLM------------------------------RLDLGELKKLEYISEGAFEGLF 196

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L   +I+++P  L+    L+ L +S N   +        LSSL  L + N+ + 
Sbjct: 197 NLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F  +  L  L+L++N ++SLP +  F+ L +L EL+L 
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLH 298

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (269), Expect = 5e-25
 Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 36/271 (13%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
                +  + R L +VP  +  N                + L L  NNI+ ++ D  R+L
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSN---------------TRYLNLMENNIQMIQADTFRHL 98

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             L VL +  N + ++   A   L  L +L++  N +  IP       + L +    +N 
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSN 177
           ++ +PS       SL   L+L +       +  + E        +  L++    +  + N
Sbjct: 159 IESIPSYAFNRVPSL-MRLDLGE----LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEF 235
             +     L EL  S N    +   +   LS L +L +  +++  I   +  G  SL E 
Sbjct: 214 --LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            + +N LS+LP +    L  L  L LH N  
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 15/148 (10%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
             S + C       L +VP     +    + L+L  N I  +  +  F  L HL+ L L 
Sbjct: 55  QFSKVVC---TRRGLSEVPQGIPSN---TRYLNLMENNIQMIQADT-FRHLHHLEVLQLG 107

Query: 484 RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL- 540
           R  +R+        L  L  L+L  N L  IP G F+ L+ L EL L +N I ++P    
Sbjct: 108 RNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF 167

Query: 541 -GLLEPSLQALRL-DGNPLRSIRRTILD 566
             +  PSL  L L +   L  I     +
Sbjct: 168 NRV--PSLMRLDLGELKKLEYISEGAFE 193

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 8e-21
 Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+   L E+P  +    R LNL       N I  +  D       +  L +  N +  +
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLM-----ENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    L  +       L  L  L+L    +K+       + L  L++S N    + 
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234

Query: 292 PE-IGKMTTLRKLLLTGNPLRTL 313
           P     +++L+KL +  + +  +
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLI 257

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  144 bits (365), Expect = 3e-39
 Identities = 63/216 (29%), Positives = 84/216 (38%), Gaps = 12/216 (5%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
                S     L A+P  I       ++ L  N I  +P     +C +L  L L  N + 
Sbjct: 12  PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 417 DWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
               A  T L+ L  L L +N  LR V    F  +  L  L L    +  L     F  L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGL 128

Query: 475 PHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 532
             LQ LYL+   L+  P D  R L  L  L L  N + S+PE  F+ L SL  L L  N 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 533 ISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 566
           ++ + P     L    L  L L  N L ++    L 
Sbjct: 189 VAHVHPHAFRDL--GRLMTLYLFANNLSALPTEALA 222

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  142 bits (359), Expect = 2e-38
 Identities = 62/210 (29%), Positives = 96/210 (45%), Gaps = 7/210 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +   S+ + L G  +S +P+        +T L L  N +  +     +  A L+ L LS 
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 413 N-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
           N +++    A    L  L  L LD   L+++    F+ +  LQ L L  N + +LP++  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT- 148

Query: 471 FSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDL 528
           F  L +L  L+L   ++   P    R L  L  L L QN +  +    F++L  L  L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 529 SDNNISALPPELGLLEPSLQALRLDGNPLR 558
             NN+SALP E      +LQ LRL+ NP  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (251), Expect = 9e-24
 Identities = 60/278 (21%), Positives = 95/278 (34%), Gaps = 64/278 (23%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
               Q  + ++P  I    +    ++  N +S +PA        L  L LHSN L     
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR--- 70

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYL 329
                      +   + +GL         L +L L+ N  LR++  +  +G     L  L
Sbjct: 71  -----------IDAAAFTGLA-------LLEQLDLSDNAQLRSVDPATFHG-----LGRL 107

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L L+   L  +   ++     +  L L 
Sbjct: 108 H------------------------------TLHLDRCGLQELGPGLFRGLAALQYLYLQ 137

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N++Q LP +      +L  L L  N+I   P+     L SL  L L  N +  V    F
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
           +D+  L  L L  N +++LP     + L  LQ L L  
Sbjct: 198 RDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 59/264 (22%), Positives = 91/264 (34%), Gaps = 44/264 (16%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
               + +   + L+ VP  +                   Q++ L  N I  +     R  
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRAC 55

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
             LT+L +  N L+ + A A   L +L+ LD+S N                       QL
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN----------------------AQL 93

Query: 127 KELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + +  +       L         +  L        + +  L ++ N L  L ++      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 185 MLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNAL 242
            LT L    N ++ +PE     L  L RL LHQNR+  +          L   Y+  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 243 SALPAE-LGKLSKLGTLDLHSNQL 265
           SALP E L  L  L  L L+ N  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 9e-21
 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 14/204 (6%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
            C    L+ +P  +             N I+ +P      C  ++ L +  N L  +   
Sbjct: 17  SCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEF 235
                 +L +L  S N       P T   L RL  L L +  +  +   +  G  +L   
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGL 290
           Y+ +NAL ALP +    L  L  L LH N++    V     R    L  L L  N ++ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 PPEI-GKMTTLRKLLLTGNPLRTL 313
            P     +  L  L L  N L  L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 54/255 (21%), Positives = 86/255 (33%), Gaps = 52/255 (20%)

Query: 65  RNLPL-LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
             +P     + +  N++S +PA +      L  L +  N + +I            F   
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA--------FT-- 77

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIA 181
              L  L       L+LSD    N  + S+         ++  L ++   L  L      
Sbjct: 78  --GLALL-----EQLDLSD----NAQLRSVDPATFHGLGRLHTLHLDRCGLQELG----- 121

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 240
                             P     L+ L  L L  N + ++P        +L   ++  N
Sbjct: 122 ------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GK 296
            +S++P      L  L  L LH N++      A     RL  L L  N+LS LP E    
Sbjct: 164 RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 297 MTTLRKLLLTGNPLR 311
           +  L+ L L  NP  
Sbjct: 224 LRALQYLRLNDNPWV 238

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  146 bits (371), Expect = 9e-39
 Identities = 65/291 (22%), Positives = 108/291 (37%), Gaps = 44/291 (15%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C  + S +     +L  +P  I   T  R L L  N ++ ++ +         L++L   
Sbjct: 41  CSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKH-----LRHLE-- 91

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNS 391
                                        L L   ++  I          +  L+L  N 
Sbjct: 92  ----------------------------ILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 392 IQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKD 449
           +  +P       + L+ L L  N I+  P      + SL  L L +   L  +    F+ 
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183

Query: 450 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQN 508
           +  L+ L+L+    +L E P  + L  L EL L    L        + L  L+ L + Q+
Sbjct: 184 LSNLRYLNLAMC--NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 509 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558
            +Q I    F NL SL E++L+ NN++ LP +L      L+ + L  NP  
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  140 bits (354), Expect = 2e-36
 Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 11/219 (5%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSR 412
           +S  ++ L+L    +  I    ++    +  L LSRN I+ +     +  A+L TL L  
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPP 470
           N++   P+     LS L  L L NNP+  +PS  F  IP L+ LDL     ++ + E   
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA- 180

Query: 471 FSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 529
           F  L +L+ L L    LRE P  +  L +L  LDLS N L +I  G F+ L  L +L + 
Sbjct: 181 FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 530 DNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 566
            + I  +       L   SL  + L  N L  +   +  
Sbjct: 240 QSQIQVIERNAFDNL--QSLVEINLAHNNLTLLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  133 bits (337), Expect = 4e-34
 Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 9/191 (4%)

Query: 380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            + +K+   R +++E+P  +S   + + L L  N+I+         L  L  L+L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 440 RQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-L 497
           R +    F  +  L  L+L  N + ++P    F  L  L+EL+LR   +   P+     +
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGA-FVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 498 QQLRILDLSQ-NSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 555
             LR LDL +   L  I EG F+ L++L  L+L+  N+  +P    L    L  L L GN
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPL--IKLDELDLSGN 217

Query: 556 PLRSIRRTILD 566
            L +IR     
Sbjct: 218 HLSAIRPGSFQ 228

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  116 bits (291), Expect = 6e-28
 Identities = 55/284 (19%), Positives = 111/284 (39%), Gaps = 46/284 (16%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  IS   +     +  N +  +       L  L  L L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 266 KEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +   + A      L+ L+L +N L+ +P      ++ L++L L  NP+ ++ S   N   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-- 158

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEA-G 380
              +  LR                               L L  +  LS I    +E   
Sbjct: 159 ---IPSLR------------------------------RLDLGELKRLSYISEGAFEGLS 185

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L+L+  +++E+P  L+    L  L LS N +          L  L  L +  + ++
Sbjct: 186 NLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            +  + F ++  L  ++L++N +  LP +  F+ L HL+ ++L 
Sbjct: 245 VIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLH 287

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 7e-25
 Identities = 56/306 (18%), Positives = 112/306 (36%), Gaps = 67/306 (21%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +    ++LR+VP+ +               + + + L L  N I+ +K    ++L  L 
Sbjct: 47  KVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           +L +S N +  +   A   L  L +L++  N +  IP+      + L +    +N ++ +
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTE 188
           PS                              + +LD+ E  +L+ +S       + L  
Sbjct: 152 PSYA----------------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           L  +   L  +P  +  L +L  LDL  N + +I                          
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------------------- 226

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLL 305
              L  L  L +  +Q++     A      L  ++L++N+L+ LP ++   +  L ++ L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 306 TGNPLR 311
             NP  
Sbjct: 287 HHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 4e-21
 Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
            C    L+E+P  +    R LNL       N I  +          +  L +  N +  +
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLH-----ENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    LS +       LS L  L+L    L+E       ++L  LDLS N LS + 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 292 PEI-GKMTTLRKLLLTGNPLRTL 313
           P     +  L+KL +  + ++ +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVI 246

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  143 bits (363), Expect = 9e-39
 Identities = 61/296 (20%), Positives = 109/296 (36%), Gaps = 41/296 (13%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +  ++  L+ +P  I   ++  +L L  N L++L   + +  T   L  
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT--QLTK 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L   L  N            ++                 +     S       +  LDLS
Sbjct: 57  LS--LSSNG-----------LSF----------KGCCSQSDFGTTS-------LKYLDLS 86

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N +  +         L+ L    + +K     ++  SL +L  L + +   R   +  F
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 448 KDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILD 504
             +  L++L ++ N    +   +  F+ L +L  L L + QL +        L  L++L+
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 505 LSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPLR 558
           +S N+  S+    +K L SL  LD S N+I     + L     SL  L L  N   
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  136 bits (345), Expect = 3e-36
 Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 14/220 (6%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNK 414
           S +  E+      L+++P+ I      T+L+L  N +Q LP         L  L LS N 
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63

Query: 415 I--KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPF 471
           +  K          +SL  L L  N +  + S  F  +  L+ LD  ++ +  + E   F
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVF 122

Query: 472 SSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNS-LQSIPEG-FKNLTSLTELDL 528
            SL +L  L +     R A   I   L  L +L ++ NS  ++     F  L +LT LDL
Sbjct: 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 182

Query: 529 SDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 566
           S   +  L P     L   SLQ L +  N   S+      
Sbjct: 183 SQCQLEQLSPTAFNSL--SSLQVLNMSHNNFFSLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  113 bits (284), Expect = 7e-28
 Identities = 57/283 (20%), Positives = 100/283 (35%), Gaps = 45/283 (15%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC 269
            +  +   + S+P+ I    S     + +N L +LP     KL++L  L L SN L    
Sbjct: 11  EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
             +        L  LDLS N +  +      +  L  L    + L+ +          ++
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-------SEFSV 121

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITK 384
              LR+                       L      L +   +     + I+     +  
Sbjct: 122 FLSLRN-----------------------L----IYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 385 LDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
           L ++ NS QE       +   +L  L LS+ +++        SLSSL  L + +N    +
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
            +  +K +  LQ+LD S N I +  +         L  L L +
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (255), Expect = 4e-24
 Identities = 57/307 (18%), Positives = 92/307 (29%), Gaps = 64/307 (20%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  +++ L  VP  +  +                 +L L  N ++ L       L  LT
Sbjct: 11  EIRCNSKGLTSVPTGIPSS---------------ATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 72  VLNVSHNKLSELPAAIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
            L++S N LS              LK LD+SFN ++ +         L   D   + LK+
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
           +                                +  LD+      V  N +    + L  
Sbjct: 116 MSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 189 LIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           L  + N       P+    L  L  LDL Q ++  +  +  +   SL    M +N   +L
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
                  L+ L  LD   N +                     L   P      ++L  L 
Sbjct: 215 DTFPYKCLNSLQVLDYSLNHIMT--------------SKKQELQHFP------SSLAFLN 254

Query: 305 LTGNPLR 311
           LT N   
Sbjct: 255 LTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 5e-21
 Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 18/160 (11%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           S + + C   ++  L  VP+           L+L  N + SLP    F  L  L +L L 
Sbjct: 8   SGTEIRC---NSKGLTSVPTGIPSS---ATRLELESNKLQSLPHGV-FDKLTQLTKLSLS 60

Query: 484 RMQLRE---APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE- 539
              L               L+ LDLS N + ++   F  L  L  LD   +N+  +    
Sbjct: 61  SNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 540 --LGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLK 577
             L L   +L  L +     R     I +  +   L+ LK
Sbjct: 121 VFLSL--RNLIYLDISHTHTRVAFNGIFNGLSS--LEVLK 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 6e-21
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+S  L  +P+ +      L L      +N + SLP       ++++KL +  N L+  
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLEL-----ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 176 SNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS--ISGCCS 231
                + +  T L  L  S N +  M      L +L  LD   + +  +          +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 232 LAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSL 287
           L    + +             LS L  L +  N  +E  +         L+ LDLS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTL 313
             L P     +++L+ L ++ N   +L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSL 214

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  146 bits (371), Expect = 5e-38
 Identities = 95/475 (20%), Positives = 166/475 (34%), Gaps = 68/475 (14%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI- 203
           SN  +T +P+DL    +   L +  N ++ L    I+  + L  L  S N +  +   + 
Sbjct: 39  SNRNLTHVPKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF 96

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
                L  LD+  NR+ +I        SL    +  N    LP   E G L+KL  L L 
Sbjct: 97  LFNQDLEYLDVSHNRLQNISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154

Query: 262 SNQLKE---YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           + + ++     V    L   +LDL +  + G   E  ++     L L  +P       + 
Sbjct: 155 AAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
                     L + +L +       T   +L    T L+VT + +         +    W
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 378 EA----------------------------------------------------GEITKL 385
                                                                  E+   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 386 DLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP- 443
            LS +    +      S +S   L  ++N   D      ++L  L  L L  N L+    
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK 394

Query: 444 -SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLR 501
            +   K++  L+ LD+S N + S   +   +    +  L L    L  +    L   +++
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-PPKVK 453

Query: 502 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
           +LDL  N + SIP+   +L +L EL+++ N + ++P  +     SLQ + L  NP
Sbjct: 454 VLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  145 bits (366), Expect = 2e-37
 Identities = 101/530 (19%), Positives = 185/530 (34%), Gaps = 66/530 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ SNR+L  VP ++                   + L L+ N+I +L+  D+  L  L 
Sbjct: 35  MVDYSNRNLTHVPKDL---------------PPRTKALSLSQNSISELRMPDISFLSELR 79

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           VL +SHN++  L   +      L+ LDVS N +  I        +L   D S N    LP
Sbjct: 80  VLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC--CPMASLRHLDLSFNDFDVLP 137

Query: 131 SS--LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                G    L+    S      L         +S + ++     +      +     T 
Sbjct: 138 VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           ++      N +     ++S      L  + I     +     +          L  +  +
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
             + +   ++ L                +  L++ N +++             +   +  
Sbjct: 258 HIETTWKCSVKLFQFFWPRP--------VEYLNIYNLTITERID-------REEFTYSET 302

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L++L                   +       +      +        ++  +     M 
Sbjct: 303 ALKSLM---------------IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC-ASLQTLILSRNKIKDWPDA--ILTS 425
               PS        T L+ ++N   +   +  S    LQTLIL RN +K++     +  +
Sbjct: 348 CPPSPS------SFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN 401

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLP-HLQELYLR 483
           +SSL  L +  N L     D        + +L+LS N   L  +  F  LP  ++ L L 
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGS-VFRCLPPKVKVLDLH 458

Query: 484 RMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNN 532
             ++   P D+  LQ L+ L+++ N L+S+P+G F  LTSL  + L DN 
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  144 bits (365), Expect = 9e-38
 Identities = 80/437 (18%), Positives = 157/437 (35%), Gaps = 43/437 (9%)

Query: 47  LQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
               + A   ++         L  LT L+  ++ ++++   I +L  L  L  + N+I  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   +   T L    C SN+L  L   +     L+      N +T L   ++    ++ L
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +   N LT +    ++  T LTEL    N      + +   ++L  LD   N+I  +   
Sbjct: 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-- 186

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +S    L       N ++ L   L +  +L  LD  SN+L E  V     +L+  D S N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYFDCSVN 243

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L+ L   +  ++ L  L      L  +  +               +L   +       K
Sbjct: 244 PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNT------------QLIYFQAEGCRKIK 289

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           E  +T  T+L      L  +   ++ +   + +  ++  L L+   + EL   +S    L
Sbjct: 290 ELDVTHNTQL----YLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKL 341

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 465
           ++L      I+D+    +  + +L+           +P +   +      + +S ++   
Sbjct: 342 KSLSCVNAHIQDFSS--VGKIPALNNNFEAEGQTITMPKETLTNN--SLTIAVSPDLLDQ 397

Query: 466 PENPPFSSLPHLQELYL 482
             NP             
Sbjct: 398 FGNPMNIEPGDGGVYDQ 414

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  130 bits (329), Expect = 7e-33
 Identities = 83/448 (18%), Positives = 145/448 (32%), Gaps = 74/448 (16%)

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
            V           +  S  +   L+     N+ IT +   +   + ++KL    N +T L
Sbjct: 23  EVAAAFEMQATDTI--SEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL 79

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
               ++  T LT L    N L  +   +  L++L  L+   N++  +   +S    L   
Sbjct: 80  D---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIG 295
               N L+ +   +   ++L  LD H N+         Q +L+ LD S N ++ L   + 
Sbjct: 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VS 188

Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 355
           +   L +L    N +    + L       L                              
Sbjct: 189 QNKLLNRLNCDTNNI----TKLDLNQNIQL------------------------------ 214

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
                 L      L+ I   +    ++T  D S N + EL   +S+ + L TL   +  +
Sbjct: 215 ----TFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDL 266

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
            +      T L             R++          L +LD     I  L      S  
Sbjct: 267 LEIDLTHNTQLIYFQA-----EGCRKIKELDVTHNTQLYLLDCQAAGITELD----LSQN 317

Query: 475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 534
           P L  LYL   +L E   D+    +L+ L      +Q        + +L     ++    
Sbjct: 318 PKLVYLYLNNTELTE--LDVSHNTKLKSLSCVNAHIQDFSS-VGKIPALNNNFEAEGQTI 374

Query: 535 ALPPELG-----LLEPSLQALRLDGNPL 557
            +P E        +  S   L   GNP+
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  123 bits (311), Expect = 2e-30
 Identities = 64/377 (16%), Positives = 127/377 (33%), Gaps = 44/377 (11%)

Query: 186 LTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
               +A+   +      +   L+ L  LD H + I  +   I     L +    +N ++ 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITT 78

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           L   L + + L  L   SN+L    V     +L+ L+   N L+ L   + +   L  L 
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLDVTPLT-KLTYLNCDTNKLTKLD--VSQNPLLTYLN 133

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
              N L  +  S              ++L E +        +  +T  T+L      L  
Sbjct: 134 CARNTLTEIDVSHN------------TQLTELDCHLNKKITKLDVTPQTQL----TTLDC 177

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
               ++ +   + +   + +L+   N+I +L   L+    L  L  S NK+ +     +T
Sbjct: 178 SFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID---VT 230

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
            L+ L+      NPL ++          L  L      +  +      +    L      
Sbjct: 231 PLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEID----LTHNTQLIYFQAE 283

Query: 484 RMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLL 543
             +  +   D+    QL +LD     +  +         L  L L++  ++ L   +   
Sbjct: 284 GCRKIKEL-DVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHN 338

Query: 544 EPSLQALRLDGNPLRSI 560
              L++L      ++  
Sbjct: 339 -TKLKSLSCVNAHIQDF 354

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 99.0 bits (247), Expect = 3e-22
 Identities = 52/254 (20%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L    NNI KL  DL     LT L+ S NKL+E+   +  L  L   D S N + ++
Sbjct: 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + + L    C    L E+   L     L  F+A          D+   +++  LD
Sbjct: 249 D--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLD 303

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            +   +T L    ++    L  L  +   L  +   +   ++L  L      I     S+
Sbjct: 304 CQAAGITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SV 357

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKL------GTLDLHSNQLKEYCVEACQLRLSVL 280
               +L   +        +P E    + L        LD   N +     +      +  
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 281 DLSNNSLSGLPPEI 294
            ++  +LS   P +
Sbjct: 418 TITWENLSTDNPAV 431

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  138 bits (351), Expect = 2e-37
 Identities = 67/209 (32%), Positives = 90/209 (43%), Gaps = 13/209 (6%)

Query: 368 NLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSL 426
           N   IP  +        LDLS N ++ L      S   LQ L LSR +I+   D    SL
Sbjct: 18  NFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 75

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRM 485
           S LS L L  NP++ +    F  +  LQ L      +ASL   P    L  L+EL +   
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHN 134

Query: 486 QLREAPTDIL--RLQQLRILDLSQNSLQSIPEG-FKNLTSLT----ELDLSDNNISALPP 538
            ++          L  L  LDLS N +QSI     + L  +      LDLS N ++ + P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 539 ELGLLEPSLQALRLDGNPLRSIRRTILDR 567
                E  L+ L LD N L+S+   I DR
Sbjct: 195 GA-FKEIRLKELALDTNQLKSVPDGIFDR 222

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  130 bits (329), Expect = 3e-34
 Identities = 61/214 (28%), Positives = 94/214 (43%), Gaps = 8/214 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
             L  ++K L L    L  + S  + +  E+  LDLSR  IQ +      S + L TLIL
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + N I+       + LSSL  L      L  + +     +  L+ L++++N I S     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRI----LDLSQNSLQSIPEGFKNLTSLT 524
            FS+L +L+ L L   +++      L  L Q+ +    LDLS N +  I  G      L 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203

Query: 525 ELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558
           EL L  N + ++P  +     SLQ + L  NP  
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  101 bits (255), Expect = 2e-24
 Identities = 45/158 (28%), Positives = 70/158 (44%), Gaps = 12/158 (7%)

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
           PD +  S  +L    L  NPLR + S  F   P LQ+LDLS   I ++ +   + SL HL
Sbjct: 23  PDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHL 78

Query: 478 QELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 535
             L L    ++         L  L+ L   + +L S+      +L +L EL+++ N I +
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 536 LPPE---LGLLEPSLQALRLDGNPLRSIRRTILDRGTK 570
                    L   +L+ L L  N ++SI  T L    +
Sbjct: 139 FKLPEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQ 174

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
              + L L+ N +  L      + P L VL++S  ++  +   A   L  L +L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 103 IMKIPDEIGSA-TALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPED--LAD 158
           I  +     S  ++L K       L  L +   G    L +   ++N I S       ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
            + +  LD+  NK+  +    +     +  L                    + LDL  N 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------------------NLSLDLSLNP 188

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           +  I         L E  +  N L ++P     +L+ L  + LH+N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 51/202 (25%), Positives = 85/202 (42%), Gaps = 12/202 (5%)

Query: 122 SSNQLKELPS-SLGRCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDVEGNKLTVLSNNL 179
           S N L+ L S S      L     S   I ++ +      S +S L + GN +  L+   
Sbjct: 36  SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA 95

Query: 180 IASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSS--ISGCCSLAEFY 236
            +  + L +L+A +  L  +    IG L  L  L++  N I S       S   +L    
Sbjct: 96  FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155

Query: 237 MGNNALSALPAE-LGKLSKL----GTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGL 290
           + +N + ++    L  L ++     +LDL  N +      A + +RL  L L  N L  +
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV 215

Query: 291 PPEI-GKMTTLRKLLLTGNPLR 311
           P  I  ++T+L+K+ L  NP  
Sbjct: 216 PDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.1 bits (219), Expect = 1e-19
 Identities = 51/236 (21%), Positives = 84/236 (35%), Gaps = 23/236 (9%)

Query: 215 HQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC 273
            +     IP ++    S     +  N L  L +       +L  LDL   +++     A 
Sbjct: 15  MELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 274 Q--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           Q    LS L L+ N +  L       +++L+KL+     L +L +  +       LK L 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT--LKEL- 129

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMNLSAIPSEIWEA-----GEITK 384
             +  N                   ++T+ + L L    + +I                 
Sbjct: 130 -NVAHNLIQS-------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           LDLS N +  + P       L+ L L  N++K  PD I   L+SL  + L  NP  
Sbjct: 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.9 bits (216), Expect = 3e-19
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C      ++P +L    + L+LS      N +  L         ++  LD+   ++  +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +       +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEAC------QLRLSVLDLSNN 285
           E  + +N + +         L+ L  LDL SN+++              L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
            ++ + P   K   L++L L  N L+++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 500 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNP 556
            + LDLS N L+ +    F +   L  LDLS   I  +       L    L  L L GNP
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNP 87

Query: 557 LRSIRRTILDRGTKAVLKYL 576
           ++S+        +   L+ L
Sbjct: 88  IQSLALGAFSGLSS--LQKL 105

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  139 bits (352), Expect = 5e-37
 Identities = 62/302 (20%), Positives = 111/302 (36%), Gaps = 32/302 (10%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++           LK 
Sbjct: 25  CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKN-----LKN 77

Query: 329 LRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L +  L  N+ S+ S           +L    + L L    L  +P ++ +   + +L +
Sbjct: 78  LHTLILINNKISKIS---PGAFAPLVKL----ERLYLSKNQLKELPEKMPKT--LQELRV 128

Query: 388 SRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLSCLKLDNNPLRQVPS 444
             N I ++     +    +  + L  N +K     +     +  LS +++ +  +  +P 
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRI 502
                   L  L L  N I  +        L +L +L L    +       L     LR 
Sbjct: 189 GLPPS---LTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL------PPELGLLEPSLQALRLDGNP 556
           L L+ N L  +P G  +   +  + L +NNISA+      PP     + S   + L  NP
Sbjct: 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

Query: 557 LR 558
           ++
Sbjct: 305 VQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  135 bits (343), Expect = 1e-35
 Identities = 64/347 (18%), Positives = 127/347 (36%), Gaps = 69/347 (19%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNN 285
           C L      +  L  +P +L        LDL +N++ E  ++         L  L L NN
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINN 86

Query: 286 SLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
            +S + P     +  L +L L+ N L+ L           + K L+              
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELP--------EKMPKTLQ-------------- 124

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE---LS 400
                           EL +    ++ +   ++    ++  ++L  N ++    E     
Sbjct: 125 ----------------ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+
Sbjct: 169 GMKKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 461 N-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--- 516
           N I+++      ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I      
Sbjct: 226 NSISAVDNGS-LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 517 ----FKNLTSLTELDLSDNNI--SALPPEL--GLLEPSLQALRLDGN 555
                    S + + L  N +    + P     +      A++L   
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV--YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  129 bits (326), Expect = 2e-33
 Identities = 66/337 (19%), Positives = 123/337 (36%), Gaps = 60/337 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      +  +P  +      A   + NN ++ +       L  L TL L +N++ +   
Sbjct: 36  VQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
            A    ++L  L LS N L  LP ++    TL++L +  N +  +R S+ NG     L  
Sbjct: 94  GAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNG-----LNQ 146

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEA-GEITKL 385
           +                                + L    L  S I +  ++   +++ +
Sbjct: 147 MI------------------------------VVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            ++  +I  +P  L    SL  L L  NKI     A L  L++L+ L L  N +  V + 
Sbjct: 177 RIADTNITTIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE-------APTDILRL 497
              + P L+ L L+ N +  +P     +   ++Q +YL    +          P    + 
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292

Query: 498 QQLRILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 531
                + L  N +Q   I    F+ +     + L + 
Sbjct: 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  115 bits (289), Expect = 2e-28
 Identities = 60/315 (19%), Positives = 118/315 (37%), Gaps = 39/315 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L  VP ++                 D   L L +N I ++K+   +NL  L 
Sbjct: 35  VVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N + ++P+       L +     N++ ++ 
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVR 137

Query: 131 S-SLGRCLNLSDFKASNNCITSL---PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
                    +   +   N + S            K+S + +    +T +   L  S   L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---L 194

Query: 187 TELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA 244
           TEL    N +  +   ++  L+ L +L L  N I ++ + S++    L E ++ NN L  
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 245 LPAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSL--SGLPPEI 294
           +P  L     +  + LH+N +                +   S + L +N +    + P  
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

Query: 295 -GKMTTLRKLLLTGN 308
              +     + L   
Sbjct: 315 FRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (264), Expect = 4e-25
 Identities = 65/382 (17%), Positives = 123/382 (32%), Gaps = 99/382 (25%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L ++P  +        LD+  N I +I                       
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIK---------------------- 68

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   NL      NN I+ +     A   K+ +L +  N+L  L   +  +   L E
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKT---LQE 125

Query: 189 LIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI---PSSISGCCSLAEFYMGNNALSA 244
           L   +N +  + +++   L+++I ++L  N + S      +  G   L+   + +  ++ 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +P  L     L  L L  N++ +              +   SL GL         L KL 
Sbjct: 186 IPQGL--PPSLTELHLDGNKITK--------------VDAASLKGLN-------NLAKLG 222

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L+ N +  + +  +         +LR                              EL L
Sbjct: 223 LSFNSISAVDNGSLAN-----TPHLR------------------------------ELHL 247

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
               L  +P  + +   I  + L  N+I  +           +  AS   + L  N ++ 
Sbjct: 248 NNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    +    +   + ++L N 
Sbjct: 308 WEIQPSTFRCVYVRAAVQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  138 bits (351), Expect = 6e-37
 Identities = 70/319 (21%), Positives = 119/319 (37%), Gaps = 36/319 (11%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           L +L    + +   C   C   L V+  S+  L  +P EI        L L  N +  LR
Sbjct: 16  LDSLPPTYSAM---CPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELR 70

Query: 315 SSLVNGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
                G     L++L +  L  N+    S   E   +   +L    ++L +   +L  IP
Sbjct: 71  KDDFKG-----LQHLYALVLVNNK---ISKIHEKAFSPLRKL----QKLYISKNHLVEIP 118

Query: 374 SEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW--PDAILTSLSSLS 430
             +  +  + +L +  N I+++P    S   ++  + +  N +++          L  L+
Sbjct: 119 PNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LN 175

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
            L++    L  +P D  +    L  L L +N I ++           L  L L   Q+R 
Sbjct: 176 YLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELED-LLRYSKLYRLGLGHNQIRM 231

Query: 490 APTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE------LGL 542
                L  L  LR L L  N L  +P G  +L  L  + L  NNI+ +          G+
Sbjct: 232 IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV 291

Query: 543 LEPSLQALRLDGNPLRSIR 561
                  + L  NP+    
Sbjct: 292 KRAYYNGISLFNNPVPYWE 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  127 bits (322), Expect = 8e-33
 Identities = 56/211 (26%), Positives = 85/211 (40%), Gaps = 12/211 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
           + +    + L A+P EI  + + T LDL  N I EL  +       L  L+L  NKI   
Sbjct: 36  RVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
            +   + L  L  L +  N L ++P +       L  L +  N I  +P+   FS L ++
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPPNLPSS---LVELRIHDNRIRKVPKGV-FSGLRNM 149

Query: 478 QELYLRRMQLREA--PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
             + +    L  +          +L  L +S+  L  IP+      +L EL L  N I A
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQA 207

Query: 536 LPPELGLLEPSLQALRLDGNPLRSIRRTILD 566
           +  E  L    L  L L  N +R I    L 
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  125 bits (317), Expect = 3e-32
 Identities = 61/336 (18%), Positives = 121/336 (36%), Gaps = 59/336 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           +      + ++P  IS         + NN +S L  +    L  L  L L +N++ +   
Sbjct: 38  VQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95

Query: 271 EACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           +A     +L  L +S N L  +PP +   ++L +L +  N +R +   + +G     L+ 
Sbjct: 96  KAFSPLRKLQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSG-----LRN 148

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL--SAIPSEIWEAGEITKLD 386
           +                                + + G  L  S      ++  ++  L 
Sbjct: 149 MN------------------------------CIEMGGNPLENSGFEPGAFDGLKLNYLR 178

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
           +S   +  +P +L    +L  L L  NKI+      L   S L  L L +N +R + +  
Sbjct: 179 ISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS 236

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI-------LRLQ 498
              +P L+ L L  N ++ +P       L  LQ +YL    + +   +        ++  
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAG--LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294

Query: 499 QLRILDLSQNSLQ--SIPEG-FKNLTSLTELDLSDN 531
               + L  N +    +    F+ +T    +   + 
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (289), Expect = 2e-28
 Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 35/291 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L+ VP E+               + D   L L +N+I +L++D  + L  L 
Sbjct: 37  VVQCSDLGLKAVPKEI---------------SPDTTLLDLQNNDISELRKDDFKGLQHLY 81

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N +++IP      ++LV+     N+++++P
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVP 139

Query: 131 -SSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                   N++  +   N + +        D  K++ L +   KLT +  +L  +   L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LN 196

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           EL    N +  +    +   S+L RL L  N+I  I +   S   +L E ++ NN LS +
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 246 PAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSLS 288
           PA L  L  L  + LH+N + +              +   + + L NN + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  107 bits (268), Expect = 1e-25
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 15/190 (7%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
             +  S   ++ +P E+S       L L  N I +        L  L  L L NN + ++
Sbjct: 36  RVVQCSDLGLKAVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQL 500
               F  +  LQ L +S N +  +P N        L EL +   ++R+ P  +   L+ +
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPPN----LPSSLVELRIHDNRIRKVPKGVFSGLRNM 149

Query: 501 RILDLSQNSLQS--IPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557
             +++  N L++     G F  L  L  L +S+  ++ +P +L     +L  L LD N +
Sbjct: 150 NCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKI 205

Query: 558 RSIRRTILDR 567
           ++I    L R
Sbjct: 206 QAIELEDLLR 215

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 7e-23
 Identities = 59/303 (19%), Positives = 105/303 (34%), Gaps = 60/303 (19%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+L N  + ++  + +K                L  L+L +N I K+ E     L  L 
Sbjct: 58  LLDLQNNDISELRKDDFKGLQ------------HLYALVLVNNKISKIHEKAFSPLRKLQ 105

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            L +S N L E+P  +     L  L +  N I K+P  +      +   +   N L+   
Sbjct: 106 KLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 131 SSLG--RCLNLSDFKASNNCITSLPEDL----------------------ADCSKMSKLD 166
              G    L L+  + S   +T +P+DL                         SK+ +L 
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  N++ ++ N  ++    L EL    N L+ +P  +  L  L  + LH N I  +    
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVG--- 280

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDL 282
                        N    +   + K +    + L +N +  + V+     C      +  
Sbjct: 281 ------------VNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 283 SNN 285
            N 
Sbjct: 328 GNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 98.9 bits (247), Expect = 8e-23
 Identities = 70/382 (18%), Positives = 120/382 (31%), Gaps = 100/382 (26%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           L V+  S   L  +P  I        LD+  N I ++                       
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELR---------------------- 70

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                   +L      NN I+ + E   +   K+ KL +  N L  +  NL         
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------- 121

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPA 247
                             S L+ L +H NRI  +P  + SG  ++    MG N L     
Sbjct: 122 -----------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164

Query: 248 ELGKLS--KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLL 304
           E G     KL  L +   +L     +  +  L+ L L +N +  +  E   + + L +L 
Sbjct: 165 EPGAFDGLKLNYLRISEAKLTGIPKDLPE-TLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N +R + +  ++      L  LR                              EL L
Sbjct: 224 LGHNQIRMIENGSLSF-----LPTLR------------------------------ELHL 248

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQTLILSRNKIKD 417
           +   LS +P+ + +   +  + L  N+I ++              A    + L  N +  
Sbjct: 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

Query: 418 W--PDAILTSLSSLSCLKLDNN 437
           W    A    ++    ++  N 
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  137 bits (348), Expect = 2e-36
 Identities = 59/219 (26%), Positives = 89/219 (40%), Gaps = 7/219 (3%)

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDA 421
                +L++IPS +     +  LDLS N I  +    L  C +LQ L+L+ N I    + 
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
             +SL SL  L L  N L  + S  FK +  L  L+L  N   +L E   FS L  LQ L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 481 YLRRM-QLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 537
            +  M    +        L  L  L++  + LQS      K++ +++ L L       L 
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 538 PELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
                +  S++ L L    L +   + L  G    L   
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  115 bits (289), Expect = 2e-28
 Identities = 62/369 (16%), Positives = 128/369 (34%), Gaps = 64/369 (17%)

Query: 199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTL 258
           MP T+  +  L  +        S  +S+S C         + +L+++P+ L     + +L
Sbjct: 1   MPHTLWMVWVLGVIISLSKEESSNQASLS-CDRNGICKGSSGSLNSIPSGL--TEAVKSL 57

Query: 259 DLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           DL +N++    +    L+    L  L L++N ++ +  +    + +L  L L+ N L  L
Sbjct: 58  DLSNNRITY--ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115

Query: 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
            SS         L  L                                L+L G     + 
Sbjct: 116 SSSWFKP-----LSSLT------------------------------FLNLLGNPYKTLG 140

Query: 374 SEIWEAG--EITKLDLSRN-SIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSL 429
                +   ++  L +    +  ++  +  +    L+ L +  + ++ +    L S+ ++
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200

Query: 430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 489
           S L L       +          ++ L+L            FS L   +   L       
Sbjct: 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD---TFHFSELSTGETNSLI------ 251

Query: 490 APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQA 549
                 +    R + ++  SL  + +    ++ L EL+ S N + ++P  +     SLQ 
Sbjct: 252 ------KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

Query: 550 LRLDGNPLR 558
           + L  NP  
Sbjct: 306 IWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  110 bits (276), Expect = 1e-26
 Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 12/200 (6%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
             S  S+  +P  L+   ++++L LS N+I    ++ L    +L  L L +N +  +  D
Sbjct: 37  KGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL--RLQQLRI 502
            F  +  L+ LDLSYN +++L  +  F  L  L  L L     +      L   L +L+I
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSS-WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 503 LDLSQN-SLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLR 558
           L +    +   I    F  LT L EL++  +++ +  P+    +   ++  L L      
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI--QNVSHLILHMKQHI 211

Query: 559 SIRRTILDRGTKAVLKYLKD 578
            +    +D  +      L+D
Sbjct: 212 LLLEIFVDVTSSVECLELRD 231

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  106 bits (267), Expect = 2e-25
 Identities = 51/315 (16%), Positives = 104/315 (33%), Gaps = 55/315 (17%)

Query: 269 CVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
              +    R  +   S+ SL+ +P  +     ++ L L+ N +  + +S +         
Sbjct: 24  NQASLSCDRNGICKGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQR-----CV 76

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLD 386
            L+                               L L    ++ I  + + + G +  LD
Sbjct: 77  NLQ------------------------------ALVLTSNGINTIEEDSFSSLGSLEHLD 106

Query: 387 LSRNSIQELPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNP-LRQVP 443
           LS N +  L        +SL  L L  N  K     ++ + L+ L  L++ N     ++ 
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 444 SDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLR 501
              F  +  L+ L++  + + S        S+ ++  L L   Q        +     + 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 502 ILDLSQNSLQSIP---------EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 552
            L+L    L +                  +   + ++D ++  +   L  +   L  L  
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI-SGLLELEF 284

Query: 553 DGNPLRSIRRTILDR 567
             N L+S+   I DR
Sbjct: 285 SRNQLKSVPDGIFDR 299

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  100 bits (250), Expect = 4e-23
 Identities = 50/297 (16%), Positives = 105/297 (35%), Gaps = 34/297 (11%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLP 68
            +G    S+ SL  +P+ +                  ++ L L++N I  +   DL+   
Sbjct: 32  RNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCV 76

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQL 126
            L  L ++ N ++ +   +   L  L+ LD+S+N +  +        ++L   +   N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 127 KELP--SSLGRCLNLSDFK-ASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           K L   S       L   +  + +  T +     A  + + +L+++ + L       + S
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 183 WTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP---------SSISGCCSL 232
              ++ LI        + E      S +  L+L    + +           +S+    + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSL 287
               + + +L  +   L ++S L  L+   NQLK            L  + L  N  
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  132 bits (335), Expect = 4e-35
 Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 11/201 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++    + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 477
              +  +L  L  L L +N L+ +P    + +P L +LD+S+N + SLP       L  L
Sbjct: 71  Q--VDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGA-LRGLGEL 126

Query: 478 QELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 535
           QELYL+  +L+  P  +L    +L  L L+ N+L  +P G    L +L  L L +N++  
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 536 LPPELGLLEPSLQALRLDGNP 556
           +P         L    L GNP
Sbjct: 187 IPKGFFGS-HLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  128 bits (323), Expect = 2e-33
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 13/190 (6%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV 442
            +++  + ++  LPP+L        L LS N +  +  A L   + L+ L LD   L ++
Sbjct: 13  LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 443 PSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQL 500
                  +P+L  LDLS+N + SLP      +LP L  L +   +L   P   L  L +L
Sbjct: 71  QV--DGTLPVLGTLDLSHNQLQSLP--LLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126

Query: 501 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPL 557
           + L L  N L+++P G       L +L L++NN++ LP  L  GL   +L  L L  N L
Sbjct: 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL--ENLDTLLLQENSL 184

Query: 558 RSIRRTILDR 567
            +I +     
Sbjct: 185 YTIPKGFFGS 194

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  111 bits (279), Expect = 2e-27
 Identities = 49/181 (27%), Positives = 67/181 (37%), Gaps = 13/181 (7%)

Query: 400 SSC-ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
            S  AS   +   +  +   P  +    + L    L  N L             L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNL 62

Query: 459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-F 517
                 L +     +LP L  L L   QL+  P     L  L +LD+S N L S+P G  
Sbjct: 63  DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 518 KNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKY 575
           + L  L EL L  N +  LPP L      P L+ L L  N L  +   +L+      L  
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPT--PKLEKLSLANNNLTELPAGLLNGLEN--LDT 176

Query: 576 L 576
           L
Sbjct: 177 L 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  101 bits (254), Expect = 4e-24
 Identities = 56/264 (21%), Positives = 89/264 (33%), Gaps = 63/264 (23%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C  +       ++    +L+ LPP++        L L+ N L T   + +          
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMP-----YTR 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L                               +L+L+   L+ +  +      +  LDLS
Sbjct: 57  LT------------------------------QLNLDRAELTKLQVD-GTLPVLGTLDLS 85

Query: 389 RNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK 448
            N +Q LP    +  +L  L +S N++   P   L  L  L  L L  N L+ +P     
Sbjct: 86  HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 449 DIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ 507
             P L+ L L+ N +  LP     + L +L  L                        L +
Sbjct: 146 PTPKLEKLSLANNNLTELPAG-LLNGLENLDTLL-----------------------LQE 181

Query: 508 NSLQSIPEGFKNLTSLTELDLSDN 531
           NSL +IP+GF     L    L  N
Sbjct: 182 NSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
           +C    L  LP  L +  + +    S N + +     L   +++++L+++  +LT L   
Sbjct: 16  NCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-- 71

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYM 237
           +  +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P     G   L E Y+
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 238 GNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI 294
             N L  LP  L     KL  L L +N L E           L  L L  NSL  +P   
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 295 GKMTTLRKLLLTGNP 309
                L    L GNP
Sbjct: 192 FGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 50/230 (21%), Positives = 84/230 (36%), Gaps = 41/230 (17%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           ++  +  + ++P  +         ++  N L       L   ++L  L+L   +L +  V
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +     L  LDLS+N L  LP     +  L  L ++ N L +L    + G    L     
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-EL----- 126

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSR 389
                                        +EL L+G  L  +P  +     ++ KL L+ 
Sbjct: 127 -----------------------------QELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157

Query: 390 NSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           N++ ELP  L +   +L TL+L  N +   P     S   L    L  NP
Sbjct: 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH-LLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 2e-18
 Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +N   R+L  +P ++                 D   L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++L    G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L  L +     N + +LP  L     K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 83.2 bits (206), Expect = 8e-18
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 6/202 (2%)

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSS 123
             +     +N     L+ LP  +        L +S N +           T L + +   
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
            +L +L    G    L     S+N + SLP        ++ LDV  N+LT L    +   
Sbjct: 65  AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNA 241
             L EL    N L  +P  +     +L +L L  N +  +P+ + +G  +L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 242 LSALPAELGKLSKLGTLDLHSN 263
           L  +P        L    LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 80.2 bits (198), Expect = 8e-17
 Identities = 58/241 (24%), Positives = 87/241 (36%), Gaps = 44/241 (18%)

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDL 282
            +S   S  E       L+ALP +L        L L  N L            RL+ L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
               L+ L  + G +  L  L L+ N L++L         P L + L             
Sbjct: 63  DRAELTKLQVD-GTLPVLGTLDLSHNQLQSL---------PLLGQTL------------- 99

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-S 400
                       L      L +    L+++P       GE+ +L L  N ++ LPP L +
Sbjct: 100 ----------PAL----TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145

Query: 401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 460
               L+ L L+ N + + P  +L  L +L  L L  N L  +P   F    +L    L  
Sbjct: 146 PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHG 204

Query: 461 N 461
           N
Sbjct: 205 N 205

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  131 bits (331), Expect = 1e-34
 Identities = 66/232 (28%), Positives = 99/232 (42%), Gaps = 16/232 (6%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNK 414
           +     +      L+AIPS I    +  KLDL  N +  LP +       L+ L L+ NK
Sbjct: 15  NNNKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           ++  P  I   L +L  L + +N L+ +P   F  +  L  L L  N + SLP    F S
Sbjct: 73  LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV-FDS 131

Query: 474 LPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           L  L  L L   +L+  P  +  +L  L+ L L  N L+ +PEG F  LT L  L L +N
Sbjct: 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN 191

Query: 532 NISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 583
            +  +P         L+ L+L  NP       I+         Y+   + + 
Sbjct: 192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII---------YMAKWLKKK 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  113 bits (286), Expect = 2e-28
 Identities = 60/184 (32%), Positives = 98/184 (53%), Gaps = 6/184 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLIL 410
           + +   +K+L L+   LS++PS+ +    ++  L L+ N +Q LP  +     +L+TL +
Sbjct: 33  SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92

Query: 411 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENP 469
           + NK++  P  +   L +L+ L+LD N L+ +P   F  +  L  L L YN + SLP+  
Sbjct: 93  TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG- 151

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELD 527
            F  L  L+EL L   QL+  P     +L +L+ L L  N L+ +PEG F +L  L  L 
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211

Query: 528 LSDN 531
           L +N
Sbjct: 212 LQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
              S++ S++ L  +P+ +                 D +KL L  N +  L       L 
Sbjct: 17  NKNSVDCSSKKLTAIPSNI---------------PADTKKLDLQSNKLSSLPSKAFHRLT 61

Query: 69  LLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQL 126
            L +L ++ NKL  LPA I  EL  L++L V+ N +  +P  +      L +     NQL
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 127 KELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWT 184
           K LP  +   L  L+      N + SLP+ + D  + + +L +  N+L  +        T
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 185 MLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
            L  L    N L  +PE    SL +L  L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
             S+D S   +  IP  I + T   K D  SN+L  LPS     L  L     ++N + +
Sbjct: 18  KNSVDCSSKKLTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 152 LPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRL 209
           LP  +      +  L V  NKL  L   +      L EL   +N L  +P  +  SL++L
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 210 IRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
             L L  N + S+P  +     SL E  + NN L  +P     KL++L TL L +NQLK 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 268 YCVEACQ--LRLSVLDLSNN 285
               A     +L +L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 43/232 (18%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
           D    ++ +IPS+I       +  + +N LS+LP++   +L+KL  L L+ N+L+     
Sbjct: 22  DCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 272 AC-QL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +L  L  L +++N L  LP  +  ++  L +L L  N L++L   + +  T  L   
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KL--- 135

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
                                            LSL    L ++P  +++    + +L L
Sbjct: 136 -------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRL 164

Query: 388 SRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             N ++ +P         L+TL L  N++K  P+    SL  L  L+L  NP
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  136 bits (344), Expect = 2e-34
 Identities = 72/450 (16%), Positives = 141/450 (31%), Gaps = 86/450 (19%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLP 68
             S S N    ++     + +  +D+             +K  L   N  +    L+   
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDK------------WEKQALPGENRNEAVSLLKECL 57

Query: 69  L--LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
           +   + L ++   LS LP  +     +  L+++ N+++ +P+   S   L   D   N+L
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALISLPELPAS---LEYLDACDNRL 112

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP       +L      NN +T LPE                              +L
Sbjct: 113 STLPELPASLKHL---DVDNNQLTMLPELP---------------------------ALL 142

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246
             + A  N L  +PE   SL  L    +  N++  +P       SL    +  N L +LP
Sbjct: 143 EYINADNNQLTMLPELPTSLEVL---SVRNNQLTFLPELPE---SLEALDVSTNLLESLP 196

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           A   +       ++                        N ++ +P  I  +     ++L 
Sbjct: 197 AVPVRNHHSEETEIF------------------FRCRENRITHIPENILSLDPTCTIILE 238

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL-- 364
            NPL +     ++  T     +         D + +T    L    T     +K+  +  
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 365 ---------EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL--QTLILSRN 413
                         SA    + +          R  +     +LS+ A L  Q+  ++ +
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD 358

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
             +   D +  + ++L    L +     + 
Sbjct: 359 ATESCEDRVALTWNNLRKTLLVHQASEGLF 388

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  129 bits (325), Expect = 6e-32
 Identities = 67/305 (21%), Positives = 112/305 (36%), Gaps = 62/305 (20%)

Query: 280 LDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
            +   N++SG   +         K  L G      R+  V+     L+            
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGE----NRNEAVSLLKECLINQFS-------- 62

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL L  +NLS++P  +    +IT L++++N++  LP  
Sbjct: 63  ----------------------ELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPEL 98

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
            +S   L+ L    N++   P+      +SL  L +DNN L  +P        +L+ ++ 
Sbjct: 99  PAS---LEYLDACDNRLSTLPE----LPASLKHLDVDNNQLTMLPEL----PALLEYINA 147

Query: 459 SYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 517
             N +  LPE         L+ L +R  QL   P      + L  LD+S N L+S+P   
Sbjct: 148 DNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPE---LPESLEALDVSTNLLESLPAVP 199

Query: 518 KNLTSLTE----LDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVL 573
                  E        +N I+ +P  +  L      + L+ NPL S  R  L + T    
Sbjct: 200 VRNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQQTAQPD 258

Query: 574 KYLKD 578
            +   
Sbjct: 259 YHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  108 bits (270), Expect = 5e-25
 Identities = 59/345 (17%), Positives = 101/345 (29%), Gaps = 65/345 (18%)

Query: 203 IGSLSRLIRLDLHQNRILSIPSSISGCCS----LAEFYMGNNALSALPAELGKLSKLGTL 258
           I +   L +   + N I    +            A      N   +L  E   +++   L
Sbjct: 7   INNNFSLSQNSFY-NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSEL 64

Query: 259 DLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
            L+   L          +++VL+++ N+L  LP        L  L    N L TL     
Sbjct: 65  QLNRLNLSSLPDNLPP-QITVLEITQNALISLPELPAS---LEYLDACDNRLSTL----- 115

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
               P L   L                              K L ++   L+ +P     
Sbjct: 116 ----PELPASL------------------------------KHLDVDNNQLTMLPELP-- 139

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
              +  ++   N +  LP   +S   L+ L +  N++   P+       SL  L +  N 
Sbjct: 140 -ALLEYINADNNQLTMLPELPTS---LEVLSVRNNQLTFLPE----LPESLEALDVSTNL 191

Query: 439 LRQVPSDGFKDI---PMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDI 494
           L  +P+   ++              N I  +PEN    SL     + L    L     + 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPEN--ILSLDPTCTIILEDNPLSSRIRES 249

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           L  Q  +          S+ +G +N       D            
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (259), Expect = 1e-23
 Identities = 53/380 (13%), Positives = 105/380 (27%), Gaps = 81/380 (21%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLDLHQNRILSIPSSIS 227
           N ++    +  ++W    +        N     +    +++   L L++  + S+P ++ 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL- 78

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSL 287
               +    +  NAL +LP     L  L                         D  +N L
Sbjct: 79  -PPQITVLEITQNALISLPELPASLEYL-------------------------DACDNRL 112

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
           S LP        L+ L +  N L  L         P L   L                  
Sbjct: 113 STLPELPAS---LKHLDVDNNQLTML---------PELPALLE----------------- 143

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 407
                         ++ +   L+ +P        +  L +  N +  LP    S   L+ 
Sbjct: 144 -------------YINADNNQLTMLPELP---TSLEVLSVRNNQLTFLPELPES---LEA 184

Query: 408 LILSRNKIKDWPDAI--LTSL-SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
           L +S N ++  P           +    +   N +  +P +    +     + L  N  S
Sbjct: 185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLS 243

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLT 524
                  S      + +  R+    +      L +     ++    ++       +    
Sbjct: 244 SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAF 303

Query: 525 ELDLSDNNISALPPELGLLE 544
           E +   N  SA    L    
Sbjct: 304 EHEEHANTFSAFLDRLSDTV 323

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (319), Expect = 1e-32
 Identities = 52/263 (19%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 63  DLRNLPLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVS-FNSIM-KIPDEIGSATALV 117
                  +  L++S   L     +P+++  L  L  L +   N+++  IP  I   T L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 118 KFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT-V 174
               +   +   +P  L +   L     S N ++ +LP  ++    +  +  +GN+++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 175 LSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSL 232
           + ++  +   + T +  S+N L G +P T  +L+ L  +DL +N +            + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 233 AEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNS 286
            + ++  N+L+  L  ++G    L  LDL +N++     +   +   +  L  L++S N+
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKF-LHSLNVSFNN 279

Query: 287 LSGLPPEIGKMTTLRKLLLTGNP 309
           L G  P+ G +          N 
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (265), Expect = 2e-25
 Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 49/291 (16%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G            GP P  +  L   
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-------GPIPPAIAKL--- 100

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNS 391
                               T+L      L +   N+S AIP  + +   +  LD S N+
Sbjct: 101 --------------------TQLHY----LYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 392 IQ-ELPPELSSCASLQTLILSRNKIKDW-PDAILTSLSSLSCLKLDNNPLR-QVPSDGFK 448
           +   LPP +SS  +L  +    N+I    PD+  +     + + +  N L  ++P     
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196

Query: 449 DIPMLQILDLSYNIAS--LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLS 506
               L  +DLS N+          F S  + Q+++L +  L      +   + L  LDL 
Sbjct: 197 L--NLAFVDLSRNMLEGDASVL--FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 507 QNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
            N +  ++P+G   L  L  L++S NN+    P+ G L           N 
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-QRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (264), Expect = 3e-25
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 42/269 (15%)

Query: 59  KLKEDLRNLPLL----TVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI---MKIPDEI 110
           ++K+DL N   L       +  +      L     + + + +LD+S  ++     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 111 GSATALVKFDCSS-NQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDV 167
            +   L        N L   +P ++ +   L     ++  ++ ++P+ L+    +  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 168 EGNKLT--VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIR-LDLHQNRIL-SI 222
             N L+  +  +  I+S   L  +    N ++G +P++ GS S+L   + + +NR+   I
Sbjct: 133 SYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 223 PSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281
           P +     +LA   +  N L        G                             + 
Sbjct: 191 PPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNT----------------------QKIH 227

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L+ NSL+    ++G    L  L L  N +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.4 bits (215), Expect = 8e-19
 Identities = 46/209 (22%), Positives = 89/209 (42%), Gaps = 18/209 (8%)

Query: 361 ELSLEGMNLS---AIPSEIWEAGEITKLDLS-RNSIQ-ELPPELSSCASLQTLILSRNKI 415
            L L G+NL     IPS +     +  L +   N++   +PP ++    L  L ++   +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 416 K-DWPDAILTSLSSLSCLKLDNNPLR-QVPSDGFKDIPMLQILDLSYN--IASLPENPPF 471
               PD + + + +L  L    N L   +P      +P L  +    N    ++P++  +
Sbjct: 114 SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGAIPDS--Y 169

Query: 472 SSLPHL-QELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDL 528
            S   L   + + R +L  + P     L  L  +DLS+N L+      F +  +  ++ L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228

Query: 529 SDNNISALPPELGLLEPSLQALRLDGNPL 557
           + N+++    ++GL   +L  L L  N +
Sbjct: 229 AKNSLAFDLGKVGLS-KNLNGLDLRNNRI 256

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  118 bits (298), Expect = 2e-29
 Identities = 55/209 (26%), Positives = 77/209 (36%), Gaps = 35/209 (16%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIK 416
           S  LS     L  +P  +        LDLS N++  L  E   +   +L +L+LS N + 
Sbjct: 20  SNILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN 77

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLP 475
                    + +L  L L +N L  +    F D+  L++L L  N I  +  N  F  + 
Sbjct: 78  FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-FEDMA 136

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG----FKNLTSLTELDLSDN 531
            LQ+LYL                       SQN +   P         L  L  LDLS N
Sbjct: 137 QLQKLYL-----------------------SQNQISRFPVELIKDGNKLPKLMLLDLSSN 173

Query: 532 NISALPPELGLLEPSL--QALRLDGNPLR 558
            +  LP       P+     L L  NPL 
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  100 bits (251), Expect = 3e-23
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 13/151 (8%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
           + + LSC       L  VP           +LDLS+N ++ L      + L +L  L L 
Sbjct: 19  ASNILSC---SKQQLPNVPQSLPSYT---ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS 72

Query: 484 RMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL- 540
              L    ++    +  LR LDLS N L ++ E  F +L +L  L L +N+I  +     
Sbjct: 73  HNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF 132

Query: 541 -GLLEPSLQALRLDGNPLRSIRRTILDRGTK 570
             +    LQ L L  N +      ++  G K
Sbjct: 133 EDM--AQLQKLYLSQNQISRFPVELIKDGNK 161

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =   99 bits (249), Expect = 5e-23
 Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 27/184 (14%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLILS 411
           L   +  L L   NLS + +E        +  L LS N +  +  E      +L+ L LS
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 470
            N +    + + + L +L  L L NN +  V  + F+D+  LQ L LS N I+  P    
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE-L 155

Query: 471 FSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLS 529
                                     L +L +LDLS N L+ +P    + L +  +  L 
Sbjct: 156 IKDGNK--------------------LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 530 -DNN 532
             NN
Sbjct: 196 LHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 56/284 (19%), Positives = 94/284 (33%), Gaps = 85/284 (29%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLL 70
            L+ S + L +VP    ++                  L L+HNN+ +L  +     L  L
Sbjct: 22  ILSCSKQQLPNVP----QSLP-----------SYTALLDLSHNNLSRLRAEWTPTRLTNL 66

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
             L +SHN L+ + + A   +  L+ LD+S N +  + + +                 +L
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL---------------FSDL 111

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                    L      NN I  +  +   D +++ KL +  N+++     LI        
Sbjct: 112 Q-------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN---- 160

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
                            L +L+ LDL  N++  +P                  L  LPA 
Sbjct: 161 ----------------KLPKLMLLDLSSNKLKKLPL---------------TDLQKLPA- 188

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
                    L LH+N L   C   C+L           LS +  
Sbjct: 189 ----WVKNGLYLHNNPL--EC--DCKLYQLFSHWQYRQLSSVMD 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 53/236 (22%), Positives = 80/236 (33%), Gaps = 63/236 (26%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYC 269
           L   + ++ ++P S+      A   + +N LS L AE    +L+ L +L L  N L    
Sbjct: 23  LSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 270 VEA-CQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            EA   +  L  LDLS+N L  L   +   +  L  LLL  N +  +  +         +
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----M 135

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
             L+                              +L L    +S  P E+ +        
Sbjct: 136 AQLQ------------------------------KLYLSQNQISRFPVELIKD------- 158

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLDNNPLR 440
                        +    L  L LS NK+K  P   L  L +     L L NNPL 
Sbjct: 159 ------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 478 QELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG--FKNLTSLTELDLSDNNISA 535
             L   + QL   P  +       +LDLS N+L  +        LT+L  L LS N+++ 
Sbjct: 21  NILSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 536 LPPEL--GLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
           +  E    +  P+L+ L L  N L ++   +        L+ L
Sbjct: 79  ISSEAFVPV--PNLRYLDLSSNHLHTLDEFLFSDLQA--LEVL 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  106 bits (266), Expect = 2e-26
 Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 4/129 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           ++L+ N ++ +P   F     L+ +DLS N I+ L  +  F  L  L  L L   ++ E 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNKITEL 95

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQ 548
           P  +   L  L++L L+ N +  +    F++L +L  L L DN +  +         ++Q
Sbjct: 96  PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 549 ALRLDGNPL 557
            + L  NP 
Sbjct: 156 TMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL- 495
           L ++P++    +P  +  + L  N I  +P    FS    L+ + L   Q+ E   D   
Sbjct: 23  LTEIPTN----LPETITEIRLEQNTIKVIPPGA-FSPYKKLRRIDLSNNQISELAPDAFQ 77

Query: 496 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG 554
            L+ L  L L  N +  +P+  F+ L SL  L L+ N I+ L  +      +L  L L  
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 555 NPLRSIRRTILDRGTK 570
           N L++I +        
Sbjct: 138 NKLQTIAKGTFSPLRA 153

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 4/131 (3%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSR 412
           L  T  E+ LE   +  IP   +    ++ ++DLS N I EL P+      SL +L+L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPF 471
           NKI + P ++   L SL  L L+ N +  +  D F+D+  L +L L  N + ++ +   F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TF 148

Query: 472 SSLPHLQELYL 482
           S L  +Q ++L
Sbjct: 149 SPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 12/118 (10%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FKNL 520
             +P N P      + E+ L +  ++  P       ++LR +DLS N +  +    F+ L
Sbjct: 24  TEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL 79

Query: 521 TSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
            SL  L L  N I+ LP  L  GL   SLQ L L+ N +  +R           L  L
Sbjct: 80  RSLNSLVLYGNKITELPKSLFEGL--FSLQLLLLNANKINCLRVDAFQDLHN--LNLL 133

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
           DC    L E+P++L      + L       N I  +P    +   K+ ++D+  N+++ L
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
           + +       L  L+   N +  +P+++   L  L  L L+ N+I  +         +L 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
              + +N L  +       L  + T+ L  N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.0 bits (151), Expect = 4e-11
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
             + ++ L  N I+ +          L  +++S+N++SEL       L  L SL +  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-C 159
           I ++P  +     +L     ++N++  L     + L NL+     +N + ++ +      
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 160 SKMSKLDVEGN 170
             +  + +  N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           + + L    +S +  +       +  L L  N I ELP  L     SLQ L+L+ NKI  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
                   L +L+ L L +N L+ +    F  +  +Q + L+ N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 31/164 (18%), Positives = 55/164 (33%), Gaps = 38/164 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            + L  N++  +PP        LR++ L+ N +  L      G     L+ L        
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRSL-------- 82

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELP 396
                                   L L G  ++ +P  ++E    +  L L+ N I  L 
Sbjct: 83  ----------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLR 120

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
            +      +L  L L  NK++       + L ++  + L  NP 
Sbjct: 121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  107 bits (268), Expect = 2e-26
 Identities = 32/218 (14%), Positives = 81/218 (37%), Gaps = 14/218 (6%)

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN-KIK 416
            ++  +   ++  IPS          L L    ++ +P    S+  ++  + +S +  ++
Sbjct: 13  EEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 417 DWPDAILTSLSSLSCLKL-DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSL 474
                   +LS ++ +++ +   L  +  D  K++P+L+ L +    +   P+     S 
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 475 PHLQELYLRR-MQLREAPTDILR--LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
                L +     +   P +  +    +   L L  N   S+     N T L  + L+ N
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKN 189

Query: 532 N-ISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 566
             ++ +  +   G+       L +    + ++    L+
Sbjct: 190 KYLTVIDKDAFGGVYS-GPSLLDVSQTSVTALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 36/209 (17%), Positives = 72/209 (34%), Gaps = 36/209 (17%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRN-SIQELPPEL-SSCASLQTLILS 411
           L  +++ L L   +L  IPS  +     I+++ +S + ++Q+L      + + +  + + 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 412 RNK-IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYN--IASLPE 467
             + +       L  L  L  L + N  L+  P         +  IL+++ N  + S+P 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 468 NPPFSSLP-HLQELYLRRMQLREAPTDILRL--------------------------QQL 500
           N  F  L      L L                                            
Sbjct: 149 NA-FQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 501 RILDLSQNSLQSIPEG-FKNLTSLTELDL 528
            +LD+SQ S+ ++P    ++L  L   + 
Sbjct: 208 SLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 32/213 (15%), Positives = 78/213 (36%), Gaps = 24/213 (11%)

Query: 118 KFDCSSNQLKELPSSLG--RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGN-KLT 173
            F  +   ++ +PS     + L L         + ++P    ++   +S++ V  +  L 
Sbjct: 15  DFRVTCKDIQRIPSLPPSTQTLKLI-----ETHLRTIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 174 VLSNNLIASWTMLTELIASKN--LLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGC 229
            L ++   + + +T +       L    P+ +  L  L  L +    +   P  + +   
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST 129

Query: 230 CSLAEFYM-GNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLS 283
                  +  N  ++++P     G  ++  TL L++N      V+       +L  + L+
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNGTKLDAVYLN 187

Query: 284 -NNSLSGLPPEI--GKMTTLRKLLLTGNPLRTL 313
            N  L+ +  +   G  +    L ++   +  L
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 33/193 (17%), Positives = 66/193 (34%), Gaps = 12/193 (6%)

Query: 46  DLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHN-KLSELPA-AIGELHMLKSLDVSFN- 101
             Q L L   ++  +      NLP ++ + VS +  L +L + +   L  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK---ASNNCITSLPEDLA 157
           ++  I  +       L      +  LK  P           F      N  +TS+P +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 158 D--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI--GSLSRLIRLD 213
              C++   L +  N  T +         +    +     L  + +    G  S    LD
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211

Query: 214 LHQNRILSIPSSI 226
           + Q  + ++PS  
Sbjct: 212 VSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 38/253 (15%), Positives = 85/253 (33%), Gaps = 55/253 (21%)

Query: 67  LPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSN 124
            P    L +    L  +P+ A   L  +  + VS + ++ ++            F     
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS--------FY---- 77

Query: 125 QLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
            L ++       + + +       +T +  D L +   +  L +    L +  +      
Sbjct: 78  NLSKV-----THIEIRN----TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK--- 125

Query: 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN-RILSIPS-SISGCCS-LAEFYMGNN 240
                              + S      L++  N  + SIP  +  G C+      + NN
Sbjct: 126 -------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 241 ALSALPAELGKLSKLGTLDLHSNQ----LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK 296
             +++       +KL  + L+ N+    + +          S+LD+S  S++ LP +   
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG-- 224

Query: 297 MTTLRKLLLTGNP 309
           +  L++L+     
Sbjct: 225 LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 36/258 (13%), Positives = 81/258 (31%), Gaps = 62/258 (24%)

Query: 209 LIRLDLHQNRILSIPS-SISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHSNQL 265
              L L +  + +IPS + S   +++  Y+  +  L  L +     LSK+  +++ +   
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT-- 90

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
                               +L+ + P+   ++  L+ L +    L+     L    +  
Sbjct: 91  -------------------RNLTYIDPDALKELPLLKFLGIFNTGLKMF-PDLTKVYSTD 130

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AGEI 382
           +   L                                   +   +++IP   ++    E 
Sbjct: 131 IFFIL--------------------------------EITDNPYMTSIPVNAFQGLCNET 158

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSL-SSLSCLKLDNNPLR 440
             L L  N    +     +   L  + L++NK +          + S  S L +    + 
Sbjct: 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 441 QVPSDGFKDIPMLQILDL 458
            +PS G + +  L   + 
Sbjct: 219 ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 47  LQKLILAHNN-IEKLKED-LRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNS 102
           +  + + +   +  +  D L+ LPLL  L + +  L   P    +    +   L+++ N 
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 103 -IMKIPDEI--GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLAD 158
            +  IP     G     +     +N    +         L       N  +T + +D   
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 159 --CSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              S  S LDV    +T L +  +     L   
Sbjct: 202 GVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  109 bits (274), Expect = 3e-26
 Identities = 42/219 (19%), Positives = 82/219 (37%), Gaps = 14/219 (6%)

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE--LSSCAS 404
           +  + + L   + EL      L  I    +   G++ K+++S+N + E+      S+   
Sbjct: 21  VTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 405 LQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-- 461
           L  + + + N +         +L +L  L + N  ++ +P           +LD+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 462 IASLPENPPFSSLPH-LQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 518
           I ++  N  F  L      L+L +  ++E         Q   +     N+L+ +P   F 
Sbjct: 141 IHTIERN-SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

Query: 519 NLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGN 555
             +    LD+S   I +LP      L    L+A      
Sbjct: 200 GASGPVILDISRTRIHSLPSYGLENL--KKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  108 bits (271), Expect = 5e-26
 Identities = 45/219 (20%), Positives = 95/219 (43%), Gaps = 15/219 (6%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
           +++    +   ++ IPS++       +L      ++ +     S    L+ + +S+N + 
Sbjct: 10  SNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 417 DWPDA-ILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSS 473
           +  +A + ++L  L  ++++  N L  +  + F+++P LQ L +S   I  LP+      
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIH 126

Query: 474 LPHLQELYLRR-MQLREAPTDILR--LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 530
                 L ++  + +     +       +  IL L++N +Q I     N T L EL+LSD
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186

Query: 531 NN-ISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILD 566
           NN +  LP ++  G        L +    + S+    L+
Sbjct: 187 NNNLEELPNDVFHGA--SGPVILDISRTRIHSLPSYGLE 223

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 99.1 bits (247), Expect = 9e-23
 Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 10/177 (5%)

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
              +  C S +  +   +K+ + P  +  +   L         LR +    F     L+ 
Sbjct: 3   HHRICHC-SNRVFLCQESKVTEIPSDLPRNAIELR---FVLTKLRVIQKGAFSGFGDLEK 58

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRRM-QLREAPTDILR-LQQLRILDLSQNSLQS 512
           +++S N +  + E   FS+LP L E+ + +   L     +  + L  L+ L +S   ++ 
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 513 IPEG-FKNLTSLTELDLSDNN-ISALPPE-LGLLEPSLQALRLDGNPLRSIRRTILD 566
           +P+    +      LD+ DN  I  +       L      L L+ N ++ I  +  +
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN 175

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.5 bits (222), Expect = 1e-19
 Identities = 48/266 (18%), Positives = 96/266 (36%), Gaps = 23/266 (8%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G     L+ +   
Sbjct: 7   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG--DLEKIE-- 60

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEI-WEAGEITKLDLSRN 390
           + +N+       + D+ +   +L     E+ +E  N L  I  E       +  L +S  
Sbjct: 61  ISQNDVL--EVIEADVFSNLPKL----HEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 391 SIQELPPEL-SSCASLQTLILSRN-KIKDWPDAILTSLSS-LSCLKLDNNPLRQVPSDGF 447
            I+ LP            L +  N  I          LS     L L+ N ++++ +  F
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174

Query: 448 KDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDL 505
               + ++     N +  LP +  F        L + R ++   P+  L  L++LR    
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 233

Query: 506 SQNSLQSIPEGFKNLTSLTELDLSDN 531
              +L+ +P   + L +L E  L+  
Sbjct: 234 --YNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.0 bits (213), Expect = 2e-18
 Identities = 50/292 (17%), Positives = 96/292 (32%), Gaps = 55/292 (18%)

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN 285
           CS   F    + ++ +P++L        L     +L+   ++         L  +++S N
Sbjct: 9   CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQN 64

Query: 286 -SLSGLPPEI-GKMTTLRKL-LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
             L  +  ++   +  L ++ +   N L  +         P L                 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN-LPNL----------------- 106

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRN-SIQELPPELS 400
                            + L +    +  +P        +   LD+  N +I  +     
Sbjct: 107 -----------------QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 401 S--CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 458
                    L L++N I++  ++             DNN L ++P+D F       ILD+
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 459 SYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 509
           S   I SLP      +L  L+        L++ PT + +L  L    L+  S
Sbjct: 210 SRTRIHSLPSY-GLENLKKLRARSTY--NLKKLPT-LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
           ++         + ++P+++ +N                 +L      +  +++       
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN---------------AIELRFVLTKLRVIQKGAFSGFG 54

Query: 69  LLTVLNVSHNK-LSELPA-AIGELHMLKSLDVS-FNSIMKIPDEI-GSATALVKFDCSSN 124
            L  + +S N  L  + A     L  L  + +   N+++ I  E   +   L     S+ 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 125 QLKELPSSLG------RCLNLSDFKASNNCITSLPEDLAD--CSKMSKLDVEGNKLTVLS 176
            +K LP            L++ D    N  I ++  +       +   L +  N +  + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD----NINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N+      +    ++  N L  +P  +    S  + LD+ + RI S+PS        L  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSN 263
                  L  LP  L KL  L    L   
Sbjct: 231 RS--TYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 47/280 (16%), Positives = 91/280 (32%), Gaps = 51/280 (18%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM--PET 202
             + +T +P DL       +L     KL V+     + +  L ++  S+N +  +   + 
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 203 IGSLSRLIRLDL-HQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLD 259
             +L +L  + +   N +L I         +L    + N  +  LP        +   LD
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 260 LHSN----QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG-NPLRTLR 314
           +  N     ++            +L L+ N +  +       T L +L L+  N L  L 
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL- 193

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                                           D+   A+        L +    + ++PS
Sbjct: 194 ------------------------------PNDVFHGASGP----VILDISRTRIHSLPS 219

Query: 375 EIWEAGEITKLD-LSRNSIQELPPELSSCASLQTLILSRN 413
              E   + KL   S  ++++LP  L    +L    L+  
Sbjct: 220 YGLE--NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 8e-11
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 11/128 (8%)

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQN-SL 510
           ++     + +  +P + P     +  EL     +LR            L  +++SQN  L
Sbjct: 12  RVFLCQESKVTEIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 511 QSIPEG-FKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG 568
           + I    F NL  L E+ +   NN+  + PE     P+LQ L +    ++ +        
Sbjct: 68  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 127

Query: 569 TKAVLKYL 576
            +     L
Sbjct: 128 LQ--KVLL 133

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM 104
              L L  N I+++         L  +    +N L ELP            LD+S   I 
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

Query: 105 KIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
            +P     +   L     S+  LK+LP +L + + L +   +   
Sbjct: 216 SLPSYGLENLKKLRAR--STYNLKKLP-TLEKLVALMEASLTYPS 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  106 bits (267), Expect = 1e-25
 Identities = 49/248 (19%), Positives = 105/248 (42%), Gaps = 10/248 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K+    +N+        +L  +T L+     ++ +   +  L+ L  L++  N I  
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   + + T + + + S N LK + S++    ++     ++  IT +   LA  S +  L
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVL 134

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
            ++ N++T +S   +A  T L  L      ++ +   + +LS+L  L    N+I  I S 
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-SP 190

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           ++   +L E ++ NN +S +   L   S L  + L +  +    V      +    +   
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 286 SLSGLPPE 293
           S + + P 
Sbjct: 250 SGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  100 bits (251), Expect = 2e-23
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 33/260 (12%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           I     I  +      L     +    + +++      +L  + +L      +  I   +
Sbjct: 3   ITQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GV 59

Query: 111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
                L+  +   NQ+ +L + L     +++ + S N + ++   +A    +  LD+   
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
           ++T ++                          +  LS L  L L  N+I +I S ++G  
Sbjct: 118 QITDVTP-------------------------LAGLSNLQVLYLDLNQITNI-SPLAGLT 151

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
           +L    +GN  +S L   L  LSKL TL    N++ +    A    L  + L NN +S +
Sbjct: 152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 291 PPEIGKMTTLRKLLLTGNPL 310
            P +   + L  + LT   +
Sbjct: 211 SP-LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 99.0 bits (247), Expect = 4e-23
 Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 12/201 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            +++    N++       +   IT L      +  +   +    +L  L L  N+I D  
Sbjct: 22  IKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLA 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              L +L+ ++ L+L  NPL+ V       +  ++ LDL+     + +  P + L +LQ 
Sbjct: 80  P--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST--QITDVTPLAGLSNLQV 133

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           LYL   Q+      +  L  L+ L +    +  +     NL+ LT L   DN IS + P 
Sbjct: 134 LYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDISPL 191

Query: 540 LGLLEPSLQALRLDGNPLRSI 560
             L  P+L  + L  N +  +
Sbjct: 192 ASL--PNLIEVHLKNNQISDV 210

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 93.6 bits (233), Expect = 3e-21
 Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 12/201 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
             LS  G  ++ I   +     +  L+L  N I +L P L +   +  L LS N +K+  
Sbjct: 44  TTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 479
              +  L S+  L L +  +  V       +  LQ+L L  N   +    P + L +LQ 
Sbjct: 102 A--IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLN--QITNISPLAGLTNLQY 155

Query: 480 LYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           L +   Q+ +    +  L +L  L    N +  I     +L +L E+ L +N IS + P 
Sbjct: 156 LSIGNAQVSDLT-PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVSPL 213

Query: 540 LGLLEPSLQALRLDGNPLRSI 560
                 +L  + L    + + 
Sbjct: 214 ANT--SNLFIVTLTNQTITNQ 232

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 60/325 (18%), Positives = 113/325 (34%), Gaps = 48/325 (14%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203
                I  +       +   K+    + +T       A    +T L A    +  + E +
Sbjct: 4   TQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGV 59

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263
             L+ LI L+L  N+I  + + +     + E  +  N L  + A +  L  + TLDL S 
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTST 117

Query: 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
           Q+ +    A    L VL L  N ++ + P +  +T L+ L +    +  L + L N    
Sbjct: 118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDL-TPLAN---- 171

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
             L  L                                L  +   +S I S +     + 
Sbjct: 172 --LSKL------------------------------TTLKADDNKISDI-SPLASLPNLI 198

Query: 384 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP 443
           ++ L  N I ++ P L++ ++L  + L+   I + P     +L       +       + 
Sbjct: 199 EVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIA 255

Query: 444 SDGFKDIPMLQILDLSYNIASLPEN 468
                D       +L++N+ S   N
Sbjct: 256 PATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ L L  N I  +   L  L  L  L++ + ++S+L   +  L  L +L    N I  I
Sbjct: 131 LQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDI 188

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S   L++    +NQ+ ++ S L    NL     +N  IT+ P    + + +    
Sbjct: 189 SP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQP-VFYNNNLVVPNV 245

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
           V+G     ++   I+          + NL + +  
Sbjct: 246 VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINN 280

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 60.5 bits (147), Expect = 4e-10
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 6/108 (5%)

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS 512
              +    +  ++ +    + L  +  L      +      +  L  L  L+L  N +  
Sbjct: 21  AIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD 77

Query: 513 IPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
           +    KNLT +TEL+LS N +  +    GL   S++ L L    +  +
Sbjct: 78  L-APLKNLTKITELELSGNPLKNVSAIAGL--QSIKTLDLTSTQITDV 122

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 470 PFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLS 529
           P  +L +  ++   +  + +  T    L  +  L      + +I EG + L +L  L+L 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELK 71

Query: 530 DNNISALPPELGLLEPSLQALRLDGNPLRSI 560
           DN I+ L P   L    +  L L GNPL+++
Sbjct: 72  DNQITDLAPLKNL--TKITELELSGNPLKNV 100

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  102 bits (257), Expect = 6e-25
 Identities = 65/184 (35%), Positives = 87/184 (47%), Gaps = 13/184 (7%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
           A  + L L    +    DA    L+ L+ L LD N L+ + +  F D+  L  L L+ N 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKN 519
           +ASLP    F  L  L +LYL   QL+  P+ +  RL +L+ L L+ N LQSIP G F  
Sbjct: 95  LASLPLGV-FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153

Query: 520 LTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK 579
           LT+L  L LS N + ++P         LQ + L GN     R  IL         YL   
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL---------YLSQW 204

Query: 580 IPEN 583
           I EN
Sbjct: 205 IREN 208

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  102 bits (257), Expect = 7e-25
 Identities = 54/167 (32%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLS 427
           L ++PS I    +  KLDL    +  L          L  L L  N+++     +   L+
Sbjct: 26  LDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT 83

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
            L  L L NN L  +P   F  +  L  L L  N + SLP    F  L  L+EL L   Q
Sbjct: 84  ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGV-FDRLTKLKELRLNTNQ 142

Query: 487 LREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           L+  P     +L  L+ L LS N LQS+P G F  L  L  + L  N
Sbjct: 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 76.7 bits (189), Expect = 6e-16
 Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-R 496
           L  VPS     IP   + LDL     +   +  F  L  L  L L   QL+     +   
Sbjct: 26  LDSVPSG----IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 497 LQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLD 553
           L +L  L L+ N L S+P G F +LT L +L L  N + +LP  +   L +  L+ LRL+
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK--LKELRLN 139

Query: 554 GNPLRSIRRTILDRGTKAVLKYL 576
            N L+SI     D+ T   L+ L
Sbjct: 140 TNQLQSIPAGAFDKLTN--LQTL 160

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           DC    L  +PS  G   +       +  + +L +      +K++ L+++ N+L  LS  
Sbjct: 20  DCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           +    T L  L  + N L  +P  +   L++L +L L  N++ S+PS +      L E  
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           +  N L ++PA    KL+ L TL L +NQL+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 42/185 (22%), Positives = 70/185 (37%), Gaps = 38/185 (20%)

Query: 280 LDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           LDL +  L+ L       +T L  L L  N L+TL + + +  T                
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT---------------- 83

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 397
                                  L L    L+++P  +++   ++ KL L  N ++ LP 
Sbjct: 84  -------------------ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

Query: 398 EL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
            +      L+ L L+ N+++  P      L++L  L L  N L+ VP   F  +  LQ +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 457 DLSYN 461
            L  N
Sbjct: 185 TLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 26/177 (14%)

Query: 45  VDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
            D +KL L    +  L     R L  LT LN+ +N+L  L A +            F+ +
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------FDDL 82

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
                     T L     ++NQL  LP  +   L  L       N + SLP  + D  +K
Sbjct: 83  ----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           + +L +  N+L  +        T L  L  S N L  +P      L +L  + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 6e-09
 Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 40/186 (21%)

Query: 258 LDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLR 314
           LDL S  L        +   +L+ L+L  N L  L   +   +T L  L L  N L +L 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
             + +  T   L  L   L  N+                               L ++PS
Sbjct: 100 LGVFDHLTQ--LDKLY--LGGNQ-------------------------------LKSLPS 124

Query: 375 EIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 432
            +++   ++ +L L+ N +Q +P        +LQTL LS N+++  P      L  L  +
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

Query: 433 KLDNNP 438
            L  N 
Sbjct: 185 TLFGNQ 190

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  107 bits (269), Expect = 8e-25
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + + I     I+++             N+    +++      EL+ +  +  + + I  +
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I     + K   + N+L ++   L    NL       N I  L   L D  K+  L 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLS 115

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +E N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I    
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
                                 L  L+KL  L L  N + +    A    L VL+L +  
Sbjct: 171 ----------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208

Query: 287 LS 288
             
Sbjct: 209 CL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  106 bits (266), Expect = 2e-24
 Identities = 53/207 (25%), Positives = 91/207 (43%), Gaps = 14/207 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++   +   E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 24  IKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 81

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              LT+L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 82  P--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 134

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            LYL   ++ +  T + RL +L  L L  N +  I      LT L  L LS N+IS L  
Sbjct: 135 SLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA 192

Query: 539 ELGLLEPSLQALRLDGNPLRSIRRTIL 565
             GL   +L  L L      +      
Sbjct: 193 LAGL--KNLDVLELFSQECLNKPINHQ 217

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  102 bits (254), Expect = 7e-23
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 13/182 (7%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 22  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 78

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
            +      ++  L  L L  N I  L        L  L+ L L    + +    ++ L Q
Sbjct: 79  DIK--PLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 132

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559
           L  L L  N +  I      LT L  L L DN IS + P  GL    LQ L L  N +  
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKNHISD 189

Query: 560 IR 561
           +R
Sbjct: 190 LR 191

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  100 bits (251), Expect = 1e-22
 Identities = 55/259 (21%), Positives = 106/259 (40%), Gaps = 28/259 (10%)

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           + + +    P++ +       P  A  + ++  L +   ++A T + +L ++        
Sbjct: 1   MGETITVSTPIKQIF------PDDAFAETIKDNLKKKSVTDAVT-QNELNSI-------- 45

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NKIKD  
Sbjct: 46  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 104 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 156

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L L   Q+ +    +  L +L+ L LS+N +  +      L +L  L+L        P 
Sbjct: 157 TLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPI 214

Query: 539 ELGLLEPSLQALR-LDGNP 556
                      ++  DG+ 
Sbjct: 215 NHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 90.2 bits (223), Expect = 4e-19
 Identities = 50/286 (17%), Positives = 99/286 (34%), Gaps = 50/286 (17%)

Query: 255 LGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR 314
           +G     S  +K+   +         +L   S++       ++ ++ +++   + +++++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ 59

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                      ++YL                         +     +L L G  L+ I  
Sbjct: 60  G----------IQYL-----------------------PNV----TKLFLNGNKLTDI-K 81

Query: 375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 434
            +     +  L L  N I++L   L     L++L L  N I D     L  L  L  L L
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL 138

Query: 435 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTD 493
            NN +  +       +  L  L L  N I+ +    P + L  LQ LYL +  + +    
Sbjct: 139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNLYLSKNHISDLR-A 192

Query: 494 ILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPP 538
           +  L+ L +L+L      +       NL     +  +D ++     
Sbjct: 193 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.0 bits (142), Expect = 3e-09
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +   L  L  L  L++  N++S++   +  L  L++L +S N I  +
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190

Query: 107 PDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
              +     L   +  S +   +  +     +  +  K ++  + + PE ++D     K 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKP 248

Query: 166 DVEGNKLT 173
           +V+ +   
Sbjct: 249 NVKWHLPE 256

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score =  102 bits (256), Expect = 2e-24
 Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 15/207 (7%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
               P + +      K +L + S+ +   + +   S+  +I + + IK      +  L +
Sbjct: 10  KQIFPDDAFAET--IKANLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPN 64

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
           +  L L  N L  + +   K++  L  L L+ N + SLP    F  L +L+EL L   QL
Sbjct: 65  VRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGV-FDKLTNLKELVLVENQL 121

Query: 488 REAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE- 544
           +  P  +  +L  L  L+L+ N LQS+P+G F  LT+LTELDLS N + +LP   G+ + 
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE--GVFDK 179

Query: 545 -PSLQALRLDGNPLRSIRRTILDRGTK 570
              L+ LRL  N L+S+   + DR T 
Sbjct: 180 LTQLKDLRLYQNQLKSVPDGVFDRLTS 206

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 97.8 bits (244), Expect = 7e-23
 Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 6/173 (3%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
           +     ++ ++   I     +  L L  N + ++   L    +L  LIL+ N+++  P+ 
Sbjct: 46  IIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQLQSLPNG 103

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 480
           +   L++L  L L  N L+ +P   F  +  L  L+L++N + SLP+   F  L +L EL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-VFDKLTNLTEL 162

Query: 481 YLRRMQLREAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            L   QL+  P  +  +L QL+ L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 18/196 (9%)

Query: 386 DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            +S    Q  P +    A      L +  + D        L+S+  +  +N+ ++ V   
Sbjct: 4   TVSTPIKQIFPDDAF--AETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQ-- 57

Query: 446 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRIL 503
           G + +P ++ L L  N +  +        L +L  L L   QL+  P  +  +L  L+ L
Sbjct: 58  GIQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114

Query: 504 DLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPLRSI 560
            L +N LQS+P+G F  LT+LT L+L+ N + +LP   G+ +   +L  L L  N L+S+
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVFDKLTNLTELDLSYNQLQSL 172

Query: 561 RRTILDRGTKAVLKYL 576
              + D+ T+  LK L
Sbjct: 173 PEGVFDKLTQ--LKDL 186

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 50/231 (21%), Positives = 94/231 (40%), Gaps = 40/231 (17%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
           + +L +  +    +      S+ +    N+ + ++   +  L  +  L L  N+L +   
Sbjct: 23  KANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA 80

Query: 271 EACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                 L+ L L+ N L  LP  +  K+T L++L+L  N L++L   + +  T       
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------- 133

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L+L    L ++P  +++    +T+LDLS
Sbjct: 134 ----------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 389 RNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            N +Q LP  +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 48/203 (23%), Positives = 77/203 (37%), Gaps = 23/203 (11%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
             S+   +  P          NL         +T         + + ++    + +  + 
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLK-----KKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ 57

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIG---SLSRLIRLDLHQNRILSIPSSI-SGCCSL 232
              I     +  L    N L      I     L+ L  L L  N++ S+P+ +     +L
Sbjct: 58  G--IQYLPNVRYLALGGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111

Query: 233 AEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK--EYCVEACQLRLSVLDLSNNSLSG 289
            E  +  N L +LP  +  KL+ L  L+L  NQL+     V      L+ LDLS N L  
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171

Query: 290 LPPEI-GKMTTLRKLLLTGNPLR 311
           LP  +  K+T L+ L L  N L+
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K  L   ++         L  +  +  +++ +  +   I  L  ++ L +  N +  
Sbjct: 20  ETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHD 77

Query: 106 IP--DEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
           I    E+ + T L     + NQL+ LP+ +   L NL +     N + SLP+ + D  + 
Sbjct: 78  ISALKELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 220
           ++ L++  N+L  L   +    T LTEL  S N L  +PE +   L++L  L L+QN++ 
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

Query: 221 SIP 223
           S+P
Sbjct: 195 SVP 197

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  101 bits (254), Expect = 4e-24
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I+++             N+    +++      EL+ +  +  + + I  +  
Sbjct: 6   ETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSV-Q 62

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
            I     + K   + N+L ++   L    NL       N +  L   L D  K+  L +E
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I   ++G
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAG 176

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L   Y+  N +S L   L  L  L  L+L S +     +      +    + N   S
Sbjct: 177 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 289 GLPPEI 294
            + PEI
Sbjct: 236 LVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 14/202 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            + +L+  +++       E   I ++  + + I+ +   +    ++  L L+ NK+ D  
Sbjct: 27  IKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIK 84

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L +L +L  L LD N ++ +     KD+  L+ L L +N I+ +        LP L+
Sbjct: 85  P--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN---GLVHLPQLE 137

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            LYL   ++ +  T + RL +L  L L  N +  I      LT L  L LS N+IS L  
Sbjct: 138 SLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA 195

Query: 539 ELGLLEPSLQALRLDGNPLRSI 560
             GL   +L  L L      + 
Sbjct: 196 LAGL--KNLDVLELFSQECLNK 215

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 94.4 bits (235), Expect = 1e-21
 Identities = 47/182 (25%), Positives = 74/182 (40%), Gaps = 13/182 (7%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +     +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 25  ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
            +      ++  L  L L  N +  L        L  L+ L L    + +    ++ L Q
Sbjct: 82  DIK--PLANLKNLGWLFLDENKVKDLS---SLKDLKKLKSLSLEHNGISDI-NGLVHLPQ 135

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559
           L  L L  N +  I      LT L  L L DN IS + P  GL    LQ L L  N +  
Sbjct: 136 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKNHISD 192

Query: 560 IR 561
           +R
Sbjct: 193 LR 194

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 13/200 (6%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
            ++     ++ ++   I     +TKL L+ N + ++ P L++  +L  L L  NK+KD  
Sbjct: 49  DQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS 106

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQ 478
              L  L  L  L L++N +  +  +G   +P L+ L L  N I  +      S L  L 
Sbjct: 107 S--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT---VLSRLTKLD 159

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 538
            L L   Q+ +    +  L +L+ L LS+N +  +      L +L  L+L        P 
Sbjct: 160 TLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPI 217

Query: 539 ELGLLEPSLQALR-LDGNPL 557
                      ++  DG+ +
Sbjct: 218 NHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 3e-18
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + ++I  +++I+ + + ++ LP +T L ++ NKL+++   +  L  L  L +  N +  +
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL 105

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +     L       N + ++ + L     L      NN IT +   L+  +K+  L 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 162

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +E N+++ +    +A  T L  L  SKN ++ +   +  L  L  L+L     L+ P +
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.4 bits (191), Expect = 7e-16
 Identities = 47/262 (17%), Positives = 93/262 (35%), Gaps = 50/262 (19%)

Query: 277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
               +L   S++       ++ ++ +++   + +++++           ++YL       
Sbjct: 26  TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQG----------IQYL------- 67

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                             +     +L L G  L+ I   +     +  L L  N +++L 
Sbjct: 68  ----------------PNV----TKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLS 106

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
             L     L++L L  N I D     L  L  L  L L NN +  +       +  L  L
Sbjct: 107 S-LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 161

Query: 457 DLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP- 514
            L  N I+ +    P + L  LQ LYL +  + +    +  L+ L +L+L      + P 
Sbjct: 162 SLEDNQISDIV---PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPI 217

Query: 515 EGFKNLTSLTELDLSDNNISAL 536
               NL     +  +D ++   
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 50/284 (17%), Positives = 102/284 (35%), Gaps = 45/284 (15%)

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
           + +E I     +  +  +  + +  I+ +L +  +     + +   S+ +    N+ + +
Sbjct: 3   LGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS 60

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +   +  L  +  L L+ N+L +    A    L  L L  N +  L   +  +  L+ L 
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118

Query: 305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL 364
           L  N +  + + LV+      L  L                              + L L
Sbjct: 119 LEHNGISDI-NGLVH------LPQL------------------------------ESLYL 141

Query: 365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 424
               ++ I + +    ++  L L  N I ++ P L+    LQ L LS+N I D     L 
Sbjct: 142 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LA 197

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN 468
            L +L  L+L +      P +   ++ +   +  +      PE 
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 75.1 bits (185), Expect = 4e-15
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  N ++ L   L++L  L  L++ HN +S++   +  L  L+SL +  N I  I
Sbjct: 92  LGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI 149

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L       NQ+ ++   L     L +   S N I+ L   LA    +  L+
Sbjct: 150 TV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLE 206

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           +   +      N  ++  +   +  +   L   PE I       + ++  +       
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 8/127 (6%)

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD 493
               P++Q+ SD           +L     S+ +    + L  + ++      ++     
Sbjct: 9   TVPTPIKQIFSD--DAFAETIKDNLKKK--SVTDAVTQNELNSIDQIIANNSDIKSV-QG 63

Query: 494 ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLD 553
           I  L  +  L L+ N L  I +   NL +L  L L +N +  L     L    L++L L+
Sbjct: 64  IQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSSLKDL--KKLKSLSLE 120

Query: 554 GNPLRSI 560
            N +  I
Sbjct: 121 HNGISDI 127

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 99.7 bits (249), Expect = 4e-24
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
           L+L+NN    + + G FK +P L+ ++ S N I  + E   F     + E+ L   +L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-FEGASGVNEILLTSNRLEN 95

Query: 490 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSL 547
               +   L+ L+ L L  N +  +    F  L+S+  L L DN I+ + P       SL
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155

Query: 548 QALRLDGNPL 557
             L L  NP 
Sbjct: 156 STLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 95.5 bits (238), Expect = 1e-22
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 12/135 (8%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL- 495
           L ++P      IP     L L+ N    L     F  LP L+++     ++ +       
Sbjct: 23  LNKIPEH----IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE 78

Query: 496 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRL 552
               +  + L+ N L+++    FK L SL  L L  N I+ +  +   GL   S++ L L
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL--SSVRLLSL 136

Query: 553 DGNPLRSIRRTILDR 567
             N + ++     D 
Sbjct: 137 YDNQITTVAPGAFDT 151

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 95.1 bits (237), Expect = 2e-22
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 28/166 (16%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L+ IP  I +     +L L+ N    L                          I   L  
Sbjct: 23  LNKIPEHIPQ--YTAELRLNNNEFTVLEA----------------------TGIFKKLPQ 58

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 487
           L  +   NN +  +    F+    +  + L+ N + ++     F  L  L+ L LR  ++
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM-FKGLESLKTLMLRSNRI 117

Query: 488 REAPTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
                D    L  +R+L L  N + ++  G F  L SL+ L+L  N
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 78.9 bits (195), Expect = 6e-17
 Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 5/134 (3%)

Query: 353 TRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKLDLSRNSIQELPPE-LSSCASLQTLI 409
             +   + EL L     + + +        ++ K++ S N I ++        + +  ++
Sbjct: 28  EHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL 87

Query: 410 LSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPEN 468
           L+ N++++    +   L SL  L L +N +  V +D F  +  +++L L  N I ++   
Sbjct: 88  LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 469 PPFSSLPHLQELYL 482
             F +L  L  L L
Sbjct: 148 -AFDTLHSLSTLNL 160

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+ +L ++P  +                   P+        ++L +  N+ TVL    
Sbjct: 17  DCSNQKLNKIPEHI-------------------PQYT------AELRLNNNEFTVLEATG 51

Query: 180 I-ASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           I      L ++  S N +  + E      S +  + L  NR+ ++   +  G  SL    
Sbjct: 52  IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           + +N ++ +  +    LS +  L L+ NQ+ 
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
           ++++     ++ I    +E A  + ++ L+ N ++ +  ++     SL+TL+L  N+I  
Sbjct: 60  RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC 119

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             +     LSS+  L L +N +  V    F  +  L  L+L  N
Sbjct: 120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.1 bits (141), Expect = 9e-10
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 39/165 (23%)

Query: 279 VLDLSNNSLSGLPPEIG--KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L L+NN  + L       K+  LRK+  + N +  +      G                
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG---------------- 79

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQEL 395
                          A+ +     E+ L    L  +  ++++    +  L L  N I  +
Sbjct: 80  ---------------ASGV----NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV 120

Query: 396 PPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
             +     +S++ L L  N+I         +L SLS L L  NP 
Sbjct: 121 GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 501 RILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNP 556
             L L+ N    +     FK L  L +++ S+N I+ +    G  E    +  + L  N 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE--GAFEGASGVNEILLTSNR 92

Query: 557 LRSIRRTILDRGTKAVLKYLK 577
           L +++  +        LK L 
Sbjct: 93  LENVQHKMFKGLES--LKTLM 111

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
               +L L +N    L+     + LP L  +N S+NK++++   A      +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC 159
            +  +  ++     +L      SN++  + +     L ++      +N IT++     D 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 160 -SKMSKLDVEGN 170
              +S L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 90.9 bits (226), Expect = 6e-21
 Identities = 50/131 (38%), Positives = 65/131 (49%), Gaps = 3/131 (2%)

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            + Q L L  N+I      +  SL +L  L L +N L  +P   F  +  L +LDL  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNL 520
           +  LP    F  L HL+EL++   +L E P  I RL  L  L L QN L+SIP G F  L
Sbjct: 100 LTVLPSA-VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158

Query: 521 TSLTELDLSDN 531
           +SLT   L  N
Sbjct: 159 SSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 86.7 bits (215), Expect = 2e-19
 Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 3/127 (2%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L L +N + ++    F  +  L+ L L  N + +LP    F SL  L  L L   QL   
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-FDSLTQLTVLDLGTNQLTVL 103

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQA 549
           P+ +  RL  L+ L +  N L  +P G + LT LT L L  N + ++P        SL  
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163

Query: 550 LRLDGNP 556
             L GNP
Sbjct: 164 AYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            L +  N++T L   +  S   L EL    N L  +P  +  SL++L  LDL  N++  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           PS++      L E +M  N L+ LP  + +L+ L  L L  NQLK
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNN 178
           DC S +   +P+  G   N       +N IT L   + D    + +L +  N+L  L   
Sbjct: 25  DCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
           +  S T LT L    N L  +P  +   L  L  L +  N++  +P  I     L    +
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142

Query: 238 GNNALSALPAE-LGKLSKLGTLDLHSNQ 264
             N L ++P     +LS L    L  N 
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L LH N+I  +   +     +L E Y+G+N L ALP  +   L++L  LDL +NQL   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                 L          L  L +  N L+ LP  I ++T L  L L  N L+
Sbjct: 103 ------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
            + Q L L  N I KL+  +  +L  L  L +  N+L  LP  +   L  L  LD+  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           +  +P  +      L +     N+L ELP  + R  +L+      N + S+P 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 36/166 (21%), Positives = 58/166 (34%), Gaps = 45/166 (27%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRS----SLVNGPTPALLKYLRSRL 333
           +L L +N ++ L P +   +  L++L L  N L  L      SL                
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ-------------- 89

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSI 392
                                       L L    L+ +PS +++    + +L +  N +
Sbjct: 90  -------------------------LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            ELP  +     L  L L +N++K  P      LSSL+   L  NP
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            ++D        +P  I +           NQ+ +L   +   L NL +    +N + +L
Sbjct: 22  TTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
           P  + D  ++++ LD+  N+LTVL + +      L EL    N L  +P  I  L+ L  
Sbjct: 80  PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 212 LDLHQNRILSIP 223
           L L QN++ SIP
Sbjct: 140 LALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 362 LSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWP 419
           L L    L A+P  ++    ++T LDL  N +  LP  +      L+ L +  NK+ + P
Sbjct: 69  LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP 128

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
             I   L+ L+ L LD N L+ +P   F  +  L    L  N
Sbjct: 129 RGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 92.3 bits (229), Expect = 1e-20
 Identities = 59/266 (22%), Positives = 99/266 (37%), Gaps = 24/266 (9%)

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMN 368
           L+ + +    G    ++K L   L       A      L      L ++  +EL+LE + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLS--LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 369 LSA---IPSEIWEAGEITKLDLSRNSIQELPPELSSC-----ASLQTLILSRNKIKDWPD 420
           ++     P       ++  L+L   S       L+         L+ L +++    ++  
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 421 AILTSLSSLSCLKLDNNPLRQ----VPSDGFKDIPMLQILDLSYN-IASLPENPP--FSS 473
             +    +LS L L +NP       + +      P LQ+L L    + +         ++
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 474 LPHLQELYLRRMQLREAPTDI--LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
              LQ L L    LR+A          QL  L+LS   L+ +P+G      L+ LDLS N
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYN 284

Query: 532 NISALPPELGLLEPSLQALRLDGNPL 557
            +   P    L  P +  L L GNP 
Sbjct: 285 RLDRNPSPDEL--PQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 4e-12
 Identities = 58/344 (16%), Positives = 94/344 (27%), Gaps = 83/344 (24%)

Query: 201 ETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSAL----PAELGKLSK 254
           E  G    L  L    +    +   + I    SL    +    + +        +  +S 
Sbjct: 37  ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96

Query: 255 LGTLDLHSNQLKEYC----VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L  L L + ++        +EA    L++L+L N S +     + ++    K  L    +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370
               S   +     +   L +                                       
Sbjct: 157 AQAHSLNFSCEQVRVFPALST--------------------------------------- 177

Query: 371 AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS 430
                         LDLS N        +S+   L+                  +L  L+
Sbjct: 178 --------------LDLSDNPELGERGLISALCPLK----------------FPTLQVLA 207

Query: 431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
                      V S        LQ LDLS+N +      P       L  L L    L++
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 490 APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 533
            P  +    +L +LDLS N L   P     L  +  L L  N  
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.2 bits (151), Expect = 9e-11
 Identities = 53/285 (18%), Positives = 85/285 (29%), Gaps = 59/285 (20%)

Query: 43  EAVDLQKLILAHNNI--EKLKEDLRNLPL-----LTVLNVSHNKLSELPAAIGELHMLKS 95
           +++ L++L +    I    L   LR L +     LT+ N+     +  P        L  
Sbjct: 66  KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L++   S       +               LK L               +     +   +
Sbjct: 126 LNLRNVSWATRDAWLAEL-----QQWLKPGLKVL-------------SIAQAHSLNFSCE 167

Query: 156 L-ADCSKMSKLDVEGNKLTVLSNNLIA----SWTMLTELIASKNLLNGMPETIGSL---- 206
                  +S LD+  N        + A     +  L  L      +        +L    
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
            +L  LDL  N +     + S                         S+L +L+L    LK
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPS---------------------CDWPSQLNSLNLSFTGLK 266

Query: 267 EYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           +  V       LSVLDLS N L   P    ++  +  L L GNP 
Sbjct: 267 Q--VPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 52/321 (16%), Positives = 79/321 (24%), Gaps = 60/321 (18%)

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           F+C      EL    GR L     +           D+     + +L V   ++      
Sbjct: 28  FNCLGAADVELYGG-GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 179 LIA---SWTMLTELIASKNLLNGM---PETIGSLSRLIRLDLHQNRILSIPSSISGCC-- 230
                   + L EL      + G    P    +   L  L+L      +  + ++     
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 231 ---SLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQL------KEYCVEACQLRLSVL 280
               L    +          E       L TLDL  N                   L VL
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 281 DLSNNSLSGLPPEIGKMTTLRKLL----LTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L N  +         +   R  L    L+ N LR    +        L           
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL----------- 255

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                    L+L    L  +P  +     ++ LDLS N +   P
Sbjct: 256 -----------------------NSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP 290

Query: 397 PELSSCASLQTLILSRNKIKD 417
                   +  L L  N   D
Sbjct: 291 SPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 40/228 (17%), Positives = 70/228 (30%), Gaps = 21/228 (9%)

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAG-EITKLDLSRNSIQEL--PPELSSCASLQTLIL 410
             S    + S     L A   E++  G  +  L    ++  +L    ++    SL+ L +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 411 SRNKIKD---WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 467
              +I     +    +  +S L  L L+N  +         +     +  L+    S   
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 468 NPPFSS------LPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSLQSIPE----- 515
              + +       P L+ L + +        + +R    L  LDLS N            
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195

Query: 516 GFKNLTSLTELDLSDNNISALPPELGLLE---PSLQALRLDGNPLRSI 560
                 +L  L L +  +         L      LQ L L  N LR  
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 37/196 (18%), Positives = 63/196 (32%), Gaps = 24/196 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            LNL N S       + +           W    L+ L +A  +      E +R  P L+
Sbjct: 125 ILNLRNVSWATRDAWLAELQQ--------WLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 72  VLNVSHNKLSELPAAI-----GELHMLKSLDVSFNSIMKIPDEIGSATA----LVKFDCS 122
            L++S N        I      +   L+ L +    +        +  A    L   D S
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 123 SNQLKELPSSLG--RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
            N L++   +        L+    S   +  +P+ L   +K+S LD+  N+L        
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP--SP 292

Query: 181 ASWTMLTELIASKNLL 196
                +  L    N  
Sbjct: 293 DELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 47  LQKLILAHNNIEKL----KEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSF 100
           LQ L L +  +E               L  L++SHN L +   A        L SL++SF
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 101 NSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT 150
             + ++P  + +   L   D S N+L   PS       + +     N   
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDE-LPQVGNLSLKGNPFL 309

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 90.6 bits (224), Expect = 3e-19
 Identities = 49/226 (21%), Positives = 81/226 (35%), Gaps = 27/226 (11%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ----------- 406
           + KE  L          +     ++ + +LS      L  EL SC  LQ           
Sbjct: 327 SQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL 386

Query: 407 TLILSRNKIKD--WPDAILTSLSSLSCL--------KLDNNPLRQVPSDGFKDIPMLQIL 456
           T+IL    +    +    L   S+L  +            +      S    +   +++L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
            L++   ++  +     L  +  L L   +LR  P  +  L+ L +L  S N+L+++  G
Sbjct: 447 HLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G 503

Query: 517 FKNLTSLTELDLSDNNISALP--PELGLLEPSLQALRLDGNPLRSI 560
             NL  L EL L +N +        L    P L  L L GN L   
Sbjct: 504 VANLPRLQELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 88.7 bits (219), Expect = 1e-18
 Identities = 44/249 (17%), Positives = 67/249 (26%), Gaps = 15/249 (6%)

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
                K   +  +       +  +   L + + S  +   L S L  C  L +       
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQEL--EPEN 381

Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLS 207
              L   +     +  L  E   L   S    +               L          +
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  L L    +  +   +     +    + +N L ALP  L  L  L  L    N L+ 
Sbjct: 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500

Query: 268 YCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               A   RL  L L NN L        +     L  L L GN L              +
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGI 551

Query: 326 LKYLRSRLP 334
            + L   LP
Sbjct: 552 QERLAEMLP 560

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 83.7 bits (206), Expect = 4e-17
 Identities = 49/245 (20%), Positives = 82/245 (33%), Gaps = 20/245 (8%)

Query: 258 LDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           + L           A   +L   +LS    + L  E+     L++L              
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL----- 386

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-ATRLSVTSKELSLEGMNLSAIPSEI 376
                  ++  +R+  P   + E       L  +   R +      S   +         
Sbjct: 387 ------TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE---NSVLK 437

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            E  ++  L L+   +  L   L     +  L LS N+++  P A L +L  L  L+  +
Sbjct: 438 MEYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASD 495

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
           N L  V   G  ++P LQ L L  N +       P  S P L  L L+   L +      
Sbjct: 496 NALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 553

Query: 496 RLQQL 500
           RL ++
Sbjct: 554 RLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.1 bits (176), Expect = 2e-13
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
            E  D++ L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 102 SIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           ++  +   + +   L +    +N+L++  +   L  C  L       N +     
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 85.8 bits (213), Expect = 7e-19
 Identities = 39/186 (20%), Positives = 72/186 (38%), Gaps = 14/186 (7%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
              K +L + S+ +L       + +Q      + I+      +   ++L  L L +N + 
Sbjct: 20  NAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQIS 76

Query: 441 QVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 499
            +     KD+  L+ L ++ N + +L           L  L+L   +LR+    ++ L+ 
Sbjct: 77  DL--SPLKDLTKLEELSVNRNRLKNLN----GIPSACLSRLFLDNNELRD-TDSLIHLKN 129

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559
           L IL +  N L+SI      L+ L  LDL  N I+       L    +  + L G    +
Sbjct: 130 LEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGGLTRL--KKVNWIDLTGQKCVN 186

Query: 560 IRRTIL 565
                 
Sbjct: 187 EPVKYQ 192

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 84.3 bits (209), Expect = 2e-18
 Identities = 39/175 (22%), Positives = 71/175 (40%), Gaps = 14/175 (8%)

Query: 387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 446
                I ++ P     A+     L +  + D        LS +     DN+ ++ +   G
Sbjct: 4   QRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AG 58

Query: 447 FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDL 505
            +    L+ L LS+N I+ L    P   L  L+EL + R +L+    + +    L  L L
Sbjct: 59  MQFFTNLKELHLSHNQISDLS---PLKDLTKLEELSVNRNRLKN--LNGIPSACLSRLFL 113

Query: 506 SQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
             N L+   +   +L +L  L + +N + ++     L    L+ L L GN + + 
Sbjct: 114 DNNELRDT-DSLIHLKNLEILSIRNNKLKSIVMLGFL--SKLEVLDLHGNEITNT 165

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             K  L   ++  L    + L  +   N  ++ +  L   +     LK L +S N I  +
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL 78

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L +   + N+LK L  +      LS     NN +    + L     +  L 
Sbjct: 79  SP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +  NKL  +    +   + L  L    N +      +  L ++  +DL   + ++ P
Sbjct: 135 IRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 76.6 bits (189), Expect = 9e-16
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 55/245 (22%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I ++      L      N+    +++L +   EL  +++ +   ++I  +  
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-- 56

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
                                 + +    NL +   S+N I+ L   L D +K+ +L V 
Sbjct: 57  ----------------------AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVN 93

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L  L+         L+ L    N L    +++  L  L  L +  N++ SI      
Sbjct: 94  RNRLKNLNGI---PSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM---- 145

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
                               LG LSKL  LDLH N++          +++ +DL+     
Sbjct: 146 --------------------LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 289 GLPPE 293
             P +
Sbjct: 186 NEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +Q     ++NI+ L   ++    L  L++SHN++S+L   + +L  L+ L V+ N +  +
Sbjct: 43  VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL 100

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +  L +    +N+L++   SL    NL      NN + S+   L   SK+  LD
Sbjct: 101 --NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLD 156

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
           + GN++T      +     +  +  +       P      L     +     R +S P  
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYY 213

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLS 253
           IS   S  +  +       LP    ++S
Sbjct: 214 ISNGGSYVDGCVLWE----LPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 38/233 (16%), Positives = 74/233 (31%), Gaps = 45/233 (19%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
              L+     +L    + +   +     +   +  N+++  L   +   T L++L L+ N
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHN 73

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            +  L S L +      L  L                              +ELS+    
Sbjct: 74  QISDL-SPLKD------LTKL------------------------------EELSVNRNR 96

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSS 428
           L  +      +  +++L L  N +++    L    +L+ L +  NK+K      L  LS 
Sbjct: 97  LKNLNGI--PSACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSIVM--LGFLSK 151

Query: 429 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
           L  L L  N +      G   +  +  +DL+              L     + 
Sbjct: 152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 40/249 (16%), Positives = 80/249 (32%), Gaps = 48/249 (19%)

Query: 214 LHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 273
                I  +     G  +  +  +G  +++ L +   +LS +   +  ++ ++       
Sbjct: 4   QRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQF 61

Query: 274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              L  L LS+N +S L P +  +T L +L +  N L     +L   P+  L        
Sbjct: 62  FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL----KNLNGIPSACL-------- 108

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ 393
                                       L L+   L      +     +  L +  N ++
Sbjct: 109 --------------------------SRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLK 141

Query: 394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML 453
            +   L   + L+ L L  N+I +     LT L  ++ + L        P     +   L
Sbjct: 142 SIVM-LGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPE---L 195

Query: 454 QILDLSYNI 462
            I +   + 
Sbjct: 196 YITNTVKDP 204

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 83.6 bits (207), Expect = 1e-18
 Identities = 46/128 (35%), Positives = 67/128 (52%), Gaps = 4/128 (3%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L L+ N L+ +P+  F ++  L  L L  N + SLP    F+ L  L  L L   QL+  
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-FNKLTSLTYLNLSTNQLQSL 91

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQ 548
           P  +  +L QL+ L L+ N LQS+P+G F  LT L +L L  N + ++P  +     SLQ
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151

Query: 549 ALRLDGNP 556
            + L  NP
Sbjct: 152 YIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 50/178 (28%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
             +  L LE  +L ++P+ +++    +T+L L  N +Q LP  + +   SL  L LS N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 474
           ++  P+ +   L+ L  L L+ N L+ +P   F                           
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD-------------------------- 121

Query: 475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
                                +L QL+ L L QN L+S+P+G F  LTSL  + L DN
Sbjct: 122 ---------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            LD+E N L  L N +    T LT+L    N L  +P  +   L+ L  L+L  N++ S+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           P+ +      L E  +  N L +LP  +  KL++L  L L+ NQLK
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            LDL  N + S+P+ +     SL + Y+G N L +LP  +  KL+ L  L+L +NQL+  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLR 311
                 L         +L  L L+ N L  LP  +  K+T L+ L L  N L+
Sbjct: 91  ------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           T +       + +P  I        LD+  NS+  +P+ +    T+L +     N+L+ L
Sbjct: 10  TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           P+ +   L +L+    S N + SLP  + D  +++ +L +  N+L  L + +    T L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           +L   +N L  +P+ +   L+ L  + LH N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            +++        +P  I + T     D  +N LK LP+ +   L +L+      N + SL
Sbjct: 10  TTVECYSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
           P  + +  + ++ L++  N+L  L N +    T L EL  + N L  +P+ +   L++L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 211 RLDLHQNRILSIP 223
            L L+QN++ S+P
Sbjct: 128 DLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 38/163 (23%)

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 337
            LDL  NSL  LP  +  ++T+L +L L GN L++L + + N  T               
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT--------------- 76

Query: 338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELP 396
                               +   L+L    L ++P+ +++   ++ +L L+ N +Q LP
Sbjct: 77  --------------------SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLP 116

Query: 397 PEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
             +      L+ L L +N++K  PD +   L+SL  + L +NP
Sbjct: 117 DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
                L L  N+++ L       L  LT L +  NKL  LP  +  +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPE 154
           +  +P+ +    T L +   ++NQL+ LP  +  +   L D +   N + S+P+
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK--EYC 269
           + +     S+P+ I          +  N+L +LP     +L+ L  L L  N+L+     
Sbjct: 13  ECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           V      L+ L+LS N L  LP  +  K+T L++L L  N L++L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 36/104 (34%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 432 LKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLRE 489
           L L++N L ++ SDG F  +P L  L+L  N +  +  N  F    H+QEL L   +++E
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENKIKE 92

Query: 490 APTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
               +   L QL+ L+L  N +  +  G F++L SLT L+L+ N
Sbjct: 93  ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 80.8 bits (200), Expect = 8e-18
 Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 12/125 (9%)

Query: 439 LRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL- 495
           L+++P D    IP+    L L+ N +  +  +  F  LPHL +L L+R QL     +   
Sbjct: 20  LKEIPRD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 496 RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRL 552
               ++ L L +N ++ I    F  L  L  L+L DN IS + P  G  E   SL +L L
Sbjct: 76  GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNL 133

Query: 553 DGNPL 557
             NP 
Sbjct: 134 ASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 357 VTSKELSLEGMNLSAIPSEIW--EAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRN 413
           + + EL L    L  I S+        + KL+L RN +  + P      + +Q L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 414 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           KIK+  + +   L  L  L L +N +  V    F+ +  L  L+L+ N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 501 RILDLSQNSLQSIPEG--FKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNP 556
             L L+ N L  I     F  L  L +L+L  N ++ + P    G     +Q L+L  N 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA--SHIQELQLGENK 89

Query: 557 LRSIRRTILDRGTKAVLKYL 576
           ++ I   +     +  LK L
Sbjct: 90  IKEISNKMFLGLHQ--LKTL 107

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 187 TELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALS 243
           TEL+ + N L  +      G L  L++L+L +N++  I  +   G   + E  +G N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 244 ALPAEL-GKLSKLGTLDLHSNQLK 266
            +  ++   L +L TL+L+ NQ+ 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 20/113 (17%)

Query: 211 RLDLHQNRILSIPSS--ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
            L L+ N +  I S         L +  +  N L+ +        S +  L L  N++KE
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 268 YCVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                  +         +L  L+L +N +S + P     + +L  L L  NP 
Sbjct: 93  -------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 360 KELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +L L+   L+ I    +E A  I +L L  N I+E+  ++      L+TL L  N+I  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 418 WPDAILTSLSSLSCLKLDNNPL 439
                   L+SL+ L L +NP 
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED--LADCSKMSKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D     N +  +  D        + KL+++ N+LT 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
           +  N     + + EL   +N +  +   +   L +L  L+L+ N+I  + 
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
           +   +L+L  N + ++  D     LP L  L +  N+L+ +   A      ++ L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            I +I +++      L   +   NQ+  + 
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 6e-18
 Identities = 29/182 (15%), Positives = 58/182 (31%), Gaps = 9/182 (4%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
                 L ++S   +    +   SL  + L+   + D     +    ++  L ++N    
Sbjct: 24  AYLNGLLGQSSTANITE--AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHAT 79

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQ 499
               +    +  L+ L +     +  + P  S L  L  L +          T I  L +
Sbjct: 80  NY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559
           +  +DLS N   +     K L  L  L++  + +           P L  L      +  
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDF--PKLNQLYAFSQTIGG 195

Query: 560 IR 561
            +
Sbjct: 196 KK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 37/219 (16%)

Query: 318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
           VN P      YL   L ++  +    T+  + ++          ++L  +N++ + + I 
Sbjct: 15  VNIPDSTFKAYLNGLLGQSSTANI--TEAQMNSL--------TYITLANINVTDL-TGIE 63

Query: 378 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 437
            A  I  L ++        P +S  ++L+ L +    +       L+ L+SL+ L + ++
Sbjct: 64  YAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRL 497
                       +P +  +DLSY       N   + +  L+                  L
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSY-------NGAITDIMPLKT-----------------L 158

Query: 498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 536
            +L+ L++  + +     G ++   L +L      I   
Sbjct: 159 PELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.9 bits (164), Expect = 6e-13
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 7/195 (3%)

Query: 55  NNIEKLKEDLRNLP---LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
               K  +D  N+P       LN    + S       +++ L  + ++  ++  +   I 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIE 63

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 170
            A  +     ++       + +    NL   +     +TS    +L+  + ++ LD+  +
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
                    I +   +  +  S N        + +L  L  L++  + +      I    
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFP 181

Query: 231 SLAEFYMGNNALSAL 245
            L + Y  +  +   
Sbjct: 182 KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LL 196
           +L+    +N  +T L   +     +  L +     T  +   I+  + L  L      + 
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 197 NGMPETIGSLSRLIRLDLHQNRI-LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255
           +     +  L+ L  LD+  +    SI + I+    +    +  N        L  L +L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
            +L++  + + +Y       +L+ L   + ++ G 
Sbjct: 162 KSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           LT +  +   +  +   I     +  L ++     +  + ISG  +L    +    +++ 
Sbjct: 46  LTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
               L  L+ L  LD+  +   +  +       +++ +DLS N        +  +  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 303 LLLTGNPLRTLR 314
           L +  + +   R
Sbjct: 164 LNIQFDGVHDYR 175

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 80.8 bits (200), Expect = 8e-18
 Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 5/103 (4%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREA 490
           L LD N    VP +   +   L ++DLS N I++L     FS++  L  L L   +LR  
Sbjct: 36  LYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQS-FSNMTQLLTLILSYNRLRCI 93

Query: 491 PTDIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
           P      L+ LR+L L  N +  +PEG F +L++L+ L +  N
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 9/108 (8%)

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLT 521
             LP+  P        ELYL   Q    P ++   + L ++DLS N + ++    F N+T
Sbjct: 23  KVLPKGIPRDV----TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMT 78

Query: 522 SLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLRSIRRTILDR 567
            L  L LS N +  +PP    GL   SL+ L L GN +  +     + 
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGL--KSLRLLSLHGNDISVVPEGAFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 64.2 bits (157), Expect = 4e-12
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 1/106 (0%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKI 415
               EL L+G   + +P E+     +T +DLS N I  L  +  S+   L TLILS N++
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           +  P      L SL  L L  N +  VP   F D+  L  L +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
            CS+  LK LP  +      L L       N  T +P++L++   ++ +D+  N+++ LS
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLS 70

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N   ++ T L  LI S N L  +P      L  L  L LH N I  +P    +   +L+ 
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 235 FYMGNN 240
             +G N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.0 bits (133), Expect = 6e-09
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 501 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL--GLLEPSLQALRLDGNPLR 558
             L L  N    +P+   N   LT +DLS+N IS L  +    + +  L  L L  N LR
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ--LLTLILSYNRLR 91

Query: 559 SIRRTILDRGTKAVLKYL 576
            I     D      L+ L
Sbjct: 92  CIPPRTFDGLKS--LRLL 107

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYC 269
            L L  N+   +P  +S    L    + NN +S L  +    +++L TL L  N+L+   
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 270 VEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                    L +L L  N +S +P      ++ L  L +  NPL
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLS 278
            +P  I     + E Y+  N  + +P EL     L  +DL +N++        +   +L 
Sbjct: 24  VLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
            L LS N L  +PP     + +LR L L GN +  +
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 439
           ++  L LS N ++ +PP       SL+ L L  N I   P+     LS+LS L +  NPL
Sbjct: 79  QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSI 103
            D+ +L L  N    + ++L N   LT++++S+N++S L       +  L +L +S+N +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 104 MKIPDEI-GSATALVKFDCSSNQLKELP 130
             IP        +L       N +  +P
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 74.6 bits (184), Expect = 9e-16
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 4/106 (3%)

Query: 454 QILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-RLQQLRILDLSQNSLQ 511
             L+L  N + SLP    F  L  L +L L + Q++  P  +  +L +L IL L +N LQ
Sbjct: 31  TRLELESNKLQSLPHGV-FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89

Query: 512 SIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
           S+P G F  LT L EL L  N + ++P  +     SLQ + L  NP
Sbjct: 90  SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 43/165 (26%), Positives = 67/165 (40%), Gaps = 51/165 (30%)

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLS 427
           L+++P+ I      T+L+L  N +Q LP  +      L  L LS+N+I+  PD +   L+
Sbjct: 19  LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLT 76

Query: 428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 487
            L+ L L  N L+ +P+  F                                        
Sbjct: 77  KLTILYLHENKLQSLPNGVFD--------------------------------------- 97

Query: 488 REAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
                   +L QL+ L L  N L+S+P+G F  LTSL ++ L  N
Sbjct: 98  --------KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 2/107 (1%)

Query: 357 VTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNK 414
            ++  L LE   L ++P  +++   ++TKL LS+N IQ LP  +      L  L L  NK
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 415 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           ++  P+ +   L+ L  L LD N L+ VP   F  +  LQ + L  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 19/111 (17%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
           RL+L  N++ S+P  +      L +  +  N + +LP  +  KL+KL  L LH N+L+  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
                 L         +L  L L  N L  +P  I  ++T+L+K+ L  NP
Sbjct: 91  ------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD 417
            +LSL    + ++P  +++   ++T L L  N +Q LP  +      L+ L L  N++K 
Sbjct: 55  TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS 114

Query: 418 WPDAILTSLSSLSCLKLDNNP 438
            PD I   L+SL  + L  NP
Sbjct: 115 VPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 23/104 (22%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
           +L++E NKL  L + +    T LT+L  S+N +  +P+ +   L++L  L LH+N++ S+
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           P+ +                        KL++L  L L +NQLK
Sbjct: 92  PNGV----------------------FDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 120 DCSSNQLKELPS---SLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVL 175
            C+S  L  +P+   S    L L      +N + SLP  + D  ++++KL +  N++  L
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
            + +    T LT L   +N L  +P  +   L++L  L L  N++ S+P
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 77.5 bits (190), Expect = 1e-15
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 463 ASLPENPP-FSSLPHLQELYLRRMQ-LREAPTDILR-LQQLRILDLSQNSLQSIPEG-FK 518
               ++        +L ELY+   Q L+      LR L +LR L + ++ L+ +    F 
Sbjct: 18  DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 558
               L+ L+LS N + +L  +  +   SLQ L L GNPL 
Sbjct: 78  FTPRLSRLNLSFNALESLSWKT-VQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 66.3 bits (161), Expect = 5e-12
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 484 RMQLREAPTDILRLQQLRILDLS-QNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELG 541
           R    ++   +   + L  L +  Q  LQ +     + L  L  L +  + +  + P+  
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 542 LLEPSLQALRLDGNPLRSIRRTILD 566
              P L  L L  N L S+    + 
Sbjct: 77  HFTPRLSRLNLSFNALESLSWKTVQ 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           + L  +R+   +    L    +L  L +   + ++      L  L  L  L +  + LR 
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70

Query: 442 VPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 482
           V  D F   P L  L+LS+N + SL        L  LQEL L
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWK-TVQGLS-LQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.0 bits (155), Expect = 3e-11
 Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN--IASLPENPPFSSLPHLQELYLRR 484
           S L C     +               L  L +     +  L        L  L+ L + +
Sbjct: 11  SGLRCT---RDGALDSL-HHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVK 65

Query: 485 MQLREAPTDILR-LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 531
             LR    D      +L  L+LS N+L+S+        SL EL LS N
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 8e-11
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAE-LGKLSKLGTLDLHSNQLKEYC 269
           L   ++  L     + G  +L E Y+     L  L    L  L +L  L +  + L+   
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--F 70

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           V         RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 46  DLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
           +L +L + +   ++ L   DLR L  L  L +  + L  +   A      L  L++SFN+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 103 IMKIPDEIGSATALVKFDCSSNQL 126
           +  +  +     +L +   S N L
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 360 KELSLEGMN-LSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
            EL +E    L  +    +   GE+  L + ++ ++ + P+       L  L LS N ++
Sbjct: 34  TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93

Query: 417 DWPDAILTSLSSLSCLKLDNNPLR 440
                 +  L SL  L L  NPL 
Sbjct: 94  SLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNN-ISALPPE--LGLLEPSLQALRLDGNPLRS 559
           L  +++             +LTEL + +   +  L      GL    L+ L +  + LR 
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL--GELRNLTIVKSGLRF 70

Query: 560 I 560
           +
Sbjct: 71  V 71

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 29/156 (18%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L                  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE----------------- 48

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKL 252
                    +  L  L  L + ++ +  +          L+   +  NAL +L  +  + 
Sbjct: 49  ------LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             L  L L  N L   C  +C LR            
Sbjct: 103 LSLQELVLSGNPLH--C--SCALRWLQRWEEEGLGG 134

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           +L      IEK+   L  L     L +S N + ++ +++  +  L+ L +  N I KI +
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLD 166
               A  L +   S NQ+  L S + + +NL     SNN IT+  E   LA   K+  L 
Sbjct: 88  LDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 167 VEGNKLT 173
           + GN L 
Sbjct: 147 LAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 67.4 bits (165), Expect = 4e-13
 Identities = 41/179 (22%), Positives = 66/179 (36%), Gaps = 54/179 (30%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  +L      I+++   LS+  + + L LS N I          +SSLS ++       
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--------EKISSLSGME------- 70

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
                       L+IL L  N+           + +L  +                   L
Sbjct: 71  -----------NLRILSLGRNL--------IKKIENLDAV----------------ADTL 95

Query: 501 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPL 557
             L +S N + S+  G + L +L  L +S+N I+    E+  L     L+ L L GNPL
Sbjct: 96  EELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNW-GEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 63.5 bits (155), Expect = 7e-12
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 162 MSKLDVEGNKLTVLS--NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
           M+K     + + +     +++A+     EL      +  M  T+ +L     L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279
             I SS+SG  +L    +G N +  +         L  L +  NQ+         + L V
Sbjct: 61  EKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           L +SNN ++      ++  +  L  LLL GNPL        N  T      +  RLP
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 40/181 (22%), Positives = 73/181 (40%), Gaps = 22/181 (12%)

Query: 342 STTKEDLI------TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
           +TT +D I                 EL      +  + + +        L LS N+I+++
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 455
              LS   +L+ L L RN IK   + +     +L  L +  N +  +   G + +  L++
Sbjct: 64  SS-LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASL--SGIEKLVNLRV 119

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYL------RRMQLREAPTD-----ILRLQQLRIL 503
           L +S N I +  E    ++L  L++L L         +   A ++     + RL  L+ L
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

Query: 504 D 504
           D
Sbjct: 180 D 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
             E+ K  +        L+     + ++ A +  L   K L +S N+I KI   +     
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMEN 71

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L       N +K++ +       L +   S N I SL   +     +  L         +
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY--------M 122

Query: 176 SNNLIASWTMLTELIASKNL 195
           SNN I +W  + +L A   L
Sbjct: 123 SNNKITNWGEIDKLAALDKL 142

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 6/107 (5%)

Query: 456 LDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           L      I  +      S+L   + L L    + +  + +  ++ LRIL L +N ++ I 
Sbjct: 30  LHGMIPPIEKMDAT--LSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIE 86

Query: 515 EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 561
                  +L EL +S N I++L     L   +L+ L +  N + +  
Sbjct: 87  NLDAVADTLEELWISYNQIASLSGIEKL--VNLRVLYMSNNKITNWG 131

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 2e-14
 Identities = 94/619 (15%), Positives = 178/619 (28%), Gaps = 175/619 (28%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           IL+    +   ++          +     + ++P +I     L   ++  + I+   D +
Sbjct: 21  ILSVF-EDAFVDNF---------DCKD--VQDMPKSI-----LSKEEI--DHIIMSKDAV 61

Query: 111 GSATALVKFDC----SSNQLKELPSSLGRCLN------LSDFKASNNCITSLPEDL---- 156
                L  F          +++    +   L       +S  K       S+   +    
Sbjct: 62  SGTLRL--FWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQ 115

Query: 157 -----ADCSKMSKLDVE-GNKLTVLSNNLIASWTMLTELIASKNL-LNGMP--------- 200
                 D    +K +V        L          L EL  +KN+ ++G+          
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 201 ETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE--FYMGNNALSALPAELGKLSKLG 256
           +   S     ++D    +I  L++       C+  E    M    L  +       S   
Sbjct: 169 DVCLSYKVQCKMD---FKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 257 -TLDLHSNQLKEYCVEACQLR-----LSVLD-LSNNSLSGLPPEIGKMTTLR-KLLLTGN 308
             + L  + ++       + +     L VL  + N        +      L  K+LLT  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNAFNLSCKILLT-- 271

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG-- 366
              T    + +     L     + +  +  S   T  E    +   L    ++L  E   
Sbjct: 272 ---TRFKQVTD----FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 367 ---MNLSAIPSEI---------WEAGEITKLD-LSRNSIQELPPEL-----SSCA----- 403
                LS I   I         W+     KL  +  +S+  L P          +     
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 404 ---SLQTL-ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ----- 454
                  L ++  + IK     ++  L   S ++                IP +      
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST-------ISIPSIYLELKV 437

Query: 455 -----------ILDLSYNIASLPENPPFSSLP-----------HLQ--ELYLRRMQLREA 490
                      I+D  YNI    ++                  HL+  E   R    R  
Sbjct: 438 KLENEYALHRSIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 491 PTDILR-LQQ-LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQ 548
             D  R L+Q +R    + N+  SI      L +L +L      I    P+   L  ++ 
Sbjct: 497 FLD-FRFLEQKIRHDSTAWNASGSI------LNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 549 --ALRLDGNPLRSIRRTIL 565
               +++ N + S    +L
Sbjct: 550 DFLPKIEENLICSKYTDLL 568

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 68.8 bits (169), Expect = 7e-14
 Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
            N  L  VP+     IP   Q L L+ N I  L     F  L +LQ+LY    +L   PT
Sbjct: 20  QNIRLASVPAG----IPTDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPT 74

Query: 493 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            +  +L QL  LDL+ N L+SIP G F NL SLT + L +N
Sbjct: 75  GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 501 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPP----ELGLLEPSLQALRLDGN 555
           + L L+ N +  +  G F +L +L +L  + N ++A+P     +L      L  L L+ N
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT----QLTQLDLNDN 91

Query: 556 PLRSIRRTILDRGTK 570
            L+SI R   D    
Sbjct: 92  HLKSIPRGAFDNLKS 106

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             ++ + + L+++P+ I    +  +L L+ N I +L P +     +LQ L  + NK+   
Sbjct: 15  TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI 72

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 73  PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           RL L+ N+I  +   +     +L + Y  +N L+A+P  +  KL++L  LDL+ N LK
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
            + +L  + N +  +P  +      L  L L+ N +K  P     +L SL+ + L NNP
Sbjct: 58  NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP 116

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.7 bits (179), Expect = 9e-14
 Identities = 84/498 (16%), Positives = 157/498 (31%), Gaps = 119/498 (23%)

Query: 116 LVKFDCSSNQL-----KELPSSLGRC--LNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
           +   D    +L      EL   L +C  + L D   +      +   L     +++L++ 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L             + + + + +             ++ +L L    +     + +G
Sbjct: 65  SNELGD------VGVHCVLQGLQTPS------------CKIQKLSLQNCCL-----TGAG 101

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-------CQLRLSVLD 281
           C  L+               L  L  L  L L  N L +  ++         Q RL  L 
Sbjct: 102 CGVLSS-------------TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 282 LSNNSLS-----GLPPEIGKMTTLRKLLLTGNPL-----RTLRSSLVNGPTPALLKYLRS 331
           L   SLS      L   +      ++L ++ N +     R L   L +  +P  L+ L+ 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD--SPCQLEALK- 205

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGE-----ITKL 385
            L     +  +      +        + +EL+L    L  +  +E+          +  L
Sbjct: 206 -LESCGVTSDNCRD---LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261

Query: 386 DLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLD 435
            +    I      +L   L +  SL+ L L+ N++ D       + +L     L  L + 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 495
           +       +                  +S+      +    L EL +   +L +A    L
Sbjct: 322 SCSFT---AACCSHF------------SSV-----LAQNRFLLELQISNNRLEDAGVREL 361

Query: 496 ------RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPE 539
                     LR+L L+   +      S+        SL ELDLS+N +       L   
Sbjct: 362 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 421

Query: 540 LGLLEPSLQALRLDGNPL 557
           +      L+ L L     
Sbjct: 422 VRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 76/425 (17%), Positives = 126/425 (29%), Gaps = 96/425 (22%)

Query: 186 LTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAEFYMG 238
           +  L      L+     E +  L +   + L    +       I S++    +LAE  + 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 239 NNALS-----ALPAELGKLS-KLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNS 286
           +N L       +   L   S K+  L L +  L                 L  L LS+N 
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L     + G       LL     L  L+       + A  + L S L             
Sbjct: 125 LG----DAGLQLLCEGLLDPQCRLEKLQLEY-CSLSAASCEPLASVLRAK---------- 169

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIP-SEIWEA-----GEITKLDLSRNSI-----QEL 395
                        KEL++   +++      + +       ++  L L    +     ++L
Sbjct: 170 ------PDF----KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 396 PPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI 450
              ++S ASL+ L L  NK+ D         +L   S L  L +    +    + G  D+
Sbjct: 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT---AKGCGDL 276

Query: 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE------APTDILRLQQLRILD 504
                         L           L+EL L   +L +        T +    QL  L 
Sbjct: 277 -----------CRVLRAKE------SLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319

Query: 505 LSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSLQALRLDG 554
           +   S                  L EL +S+N +       L   LG     L+ L L  
Sbjct: 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379

Query: 555 NPLRS 559
             +  
Sbjct: 380 CDVSD 384

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 3e-11
 Identities = 85/499 (17%), Positives = 146/499 (29%), Gaps = 141/499 (28%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKS 95
            Q + L    +     + +   LR  P L  LN+  N+L +     +   +      ++ 
Sbjct: 30  CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L +       +         L     +   L+E        L+LSD    +  +  L E 
Sbjct: 90  LSLQNCC---LTGA--GCGVLSSTLRTLPTLQE--------LHLSDNLLGDAGLQLLCEG 136

Query: 156 LAD-CSKMSKLDVEGNKLTVLSNNLIASW----TMLTELIASKNLLN--GMPETIGSLS- 207
           L D   ++ KL +E   L+  S   +AS         EL  S N +N  G+      L  
Sbjct: 137 LLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196

Query: 208 ---RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
              +L  L L    +     +   C  L                +   + L  L L SN+
Sbjct: 197 SPCQLEALKLESCGV-----TSDNCRDLCGI-------------VASKASLRELALGSNK 238

Query: 265 LKEYCVEA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLLTGNPLRT 312
           L +  +            RL  L +    ++      L   +    +L++L L GN L  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL-- 296

Query: 313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI 372
                                    D  A    E L+    +L    + L ++  + +A 
Sbjct: 297 ------------------------GDEGARLLCETLLEPGCQL----ESLWVKSCSFTAA 328

Query: 373 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLS 427
                                     L+    L  L +S N+++D         +    S
Sbjct: 329 ------------------CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS 370

Query: 428 SLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYN---------IASLPENPPF 471
            L  L L +  +          +         L+ LDLS N         +      P  
Sbjct: 371 VLRVLWLADCDVS---DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG- 426

Query: 472 SSLPHLQELYLRRMQLREA 490
                L++L L  +   E 
Sbjct: 427 ---CLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 60.7 bits (148), Expect = 6e-10
 Identities = 61/367 (16%), Positives = 103/367 (28%), Gaps = 81/367 (22%)

Query: 231 SLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDL 282
            +    +    LS       L  L +   + L    L E   +           L+ L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
            +N L     ++G    L+ L      ++ L        T A    L S L         
Sbjct: 64  RSNELG----DVGVHCVLQGLQTPSCKIQKLSLQ-NCCLTGAGCGVLSSTLRTLP----- 113

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG------EITKLDLSRNSI---- 392
                          T +EL L    L     ++   G       + KL L   S+    
Sbjct: 114 ---------------TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158

Query: 393 -QELPPELSSCASLQTLILSRNKIKDW-----PDAILTSLSSLSCLKLDNNPLR----QV 442
            + L   L +    + L +S N I +         +  S   L  LKL++  +     + 
Sbjct: 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI 502
                     L+ L L  N            +  L    L                +LR 
Sbjct: 219 LCGIVASKASLRELALGSN------KLGDVGMAELCPGLLHP------------SSRLRT 260

Query: 503 LDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSLQALRL 552
           L + +  +       +    +   SL EL L+ N +       L   L      L++L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 553 DGNPLRS 559
                 +
Sbjct: 321 KSCSFTA 327

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 38/101 (37%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 435 DNNPLRQVPSDGFKDIPM-LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPT 492
               L  VP+     IP   Q+L L  N I  L     F  L  L  L L   QL   P 
Sbjct: 17  SGKSLASVPTG----IPTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA 71

Query: 493 DIL-RLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
            +  +L QL  L L+ N L+SIP G F NL SLT + L +N
Sbjct: 72  GVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 478 QELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISAL 536
             +      L   PT I      ++L L  N +  +  G F  LT LT LDL +N ++ L
Sbjct: 12  TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 537 PP----ELGLLEPSLQALRLDGNPLRSIRRTILDRGTK 570
           P     +L      L  L L+ N L+SI R   D    
Sbjct: 70  PAGVFDKLT----QLTQLSLNDNQLKSIPRGAFDNLKS 103

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDW 418
             +   G +L+++P+ I        L L  N I +L P +      L  L L  N++   
Sbjct: 12  TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL 69

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
           P  +   L+ L+ L L++N L+ +P   F ++  L  + L  N
Sbjct: 70  PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
            L L+ N+I  +   +      L    + NN L+ LPA +  KL++L  L L+ NQLK
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 381 EITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 438
           ++T+LDL  N +  LP  +      L  L L+ N++K  P     +L SL+ + L NNP
Sbjct: 55  QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 51/302 (16%), Positives = 85/302 (28%), Gaps = 57/302 (18%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSL 96
           ++   L  + I     + +   L     +  + +S N +       L   I     L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 97  DVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + S     ++ DEI      L++      +L          + LSD          L + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT--------VRLSDNAFGPTAQEPLIDF 117

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
           L+  + +  L +  N L   +   IA    L EL  +K   N           L  +   
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNA--------PPLRSIICG 167

Query: 216 QNRI-----LSIPSSISGCCSLAEFYMGNN------ALSALPAELGKLSKLGTLDLHSNQ 264
           +NR+          +      L    M  N          L   L    +L  LDL  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 265 LKEYCVEA------CQLRLSVLDLSNNSL---------SGLPPEIGKMTTLRKLLLTGNP 309
                  A          L  L L++  L                 +   L+ L L  N 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNE 285

Query: 310 LR 311
           + 
Sbjct: 286 IE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 52/265 (19%), Positives = 88/265 (33%), Gaps = 67/265 (25%)

Query: 360 KELSLEGMNLSAIPSEIWEAGE-----------ITKLDLSRNSI-----QELPPELSSCA 403
           +      +    +  EI EA             +  + LS N+      + L   LS   
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 404 SLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN- 461
            L+ L L  N +       I  +L  L+  K              K+ P L+ +    N 
Sbjct: 123 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKA------------KNAPPLRSIICGRNR 170

Query: 462 --------IASLPENPPFSSLPHLQELYLRRMQLR-----EAPTDILRL-QQLRILDLSQ 507
                    A       F S   L  + + +  +R         + L   Q+L++LDL  
Sbjct: 171 LENGSMKEWAKT-----FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD 225

Query: 508 NSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLE-PSLQALRLDGNP 556
           N+       ++    K+  +L EL L+D  +S     A+      LE   LQ LRL  N 
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 557 LRSIRRTILDRGTKAVLKYLKDKIP 581
           +            + +   + +K+P
Sbjct: 286 IE-------LDAVRTLKTVIDEKMP 303

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 47/343 (13%), Positives = 101/343 (29%), Gaps = 84/343 (24%)

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNSLS-----GLPPEIGKM 297
           + + S +    L  + +     ++          +  + LS N++       L   I   
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
             L     +      ++  +        L+ L   L +                   + +
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEA-----LRLLLQALLKC-------------PKLHTVRL 101

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--------------LPPELSSCA 403
           +             +   + +   +  L L  N +                +  +  +  
Sbjct: 102 SDNAFGPTAQ--EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP 159

Query: 404 SLQTLILSRNKIKD-----WPDAILTSLSSLSCLKLDNNPLR-----QVPSDGFKDIPML 453
            L+++I  RN++++     W      S   L  +K+  N +R      +  +G      L
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKT-FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218

Query: 454 QILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-------RL 497
           ++LDL  N         +A         S P+L+EL L    L       +         
Sbjct: 219 KVLDLQDNTFTHLGSSALAIA-----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 498 QQLRILDLSQNSL-----QSIPEGFK-NLTSLTELDLSDNNIS 534
             L+ L L  N +     +++       +  L  L+L+ N  S
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 58/349 (16%), Positives = 102/349 (29%), Gaps = 83/349 (23%)

Query: 209 LIRLDLHQNRI-----LSIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTL 258
           +    L  + I      S+ + +    S+ E  +  N +       L   +     L   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 259 DLHSNQ---LKEYCVEACQL---------RLSVLDLSNNSL-----SGLPPEIGKMTTLR 301
           +        +K+   EA +L         +L  + LS+N+        L   + K T L 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 125

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
            L L  N L            P     +   L E   ++ +     L      +      
Sbjct: 126 HLYLHNNGL-----------GPQAGAKIARALQELAVNKKAKNAPPL----RSIICGRNR 170

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE------LPPELSSCASLQTLILSRNKI 415
           L    M              +  + + +N I+       L   L+ C  L+ L L  N  
Sbjct: 171 LENGSM--KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 416 KDWPDAI-----LTSLSSLSCLKLDNNPLRQVPSDGFKDI---------PMLQILDLSYN 461
                +      L S  +L  L L++  L    + G   +           LQ L L YN
Sbjct: 229 TH-LGSSALAIALKSWPNLRELGLNDCLLS---ARGAAAVVDAFSKLENIGLQTLRLQYN 284

Query: 462 ----------IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
                        + E      +P L  L L   +  E    +  ++++
Sbjct: 285 EIELDAVRTLKTVIDEK-----MPDLLFLELNGNRFSEEDDVVDEIREV 328

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 47/300 (15%), Positives = 83/300 (27%), Gaps = 71/300 (23%)

Query: 3   RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNI----- 57
             + + +       S+     V +E+ +      +     +   L  + L+ N       
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQ 111

Query: 58  EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM---------LKSLDVSFNSI 103
           E L + L     L  L + +N L       +  A+ EL +         L+S+    N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 104 -----MKIPDEIGSATALVKFDCSSNQLKE------LPSSLGRCLNLSDFKASNNCIT-- 150
                 +      S   L       N ++       L   L  C  L      +N  T  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 151 ---SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
              +L   L     + +L +    L+      +          A   L N          
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--------AFSKLEN---------I 274

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            L  L L  N I      +    +L                  K+  L  L+L+ N+  E
Sbjct: 275 GLQTLRLQYNEI-----ELDAVRTLKT------------VIDEKMPDLLFLELNGNRFSE 317

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 59.8 bits (145), Expect = 9e-11
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 7/136 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LD  +++  ++    +   +L+ L L    +     + L  L  L  L+L  N +     
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD 88

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAP----TDILRLQQ 499
              + +P L  L+LS N +  +    P   L  L+ L L   ++        +    L Q
Sbjct: 89  MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148

Query: 500 LRILDLSQNSLQSIPE 515
           L  LD      Q  P+
Sbjct: 149 LTYLDGYDREDQEAPD 164

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 2/105 (1%)

Query: 456 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE 515
           +D+   I     N   +++  L  L   +    +          L  L L    L S+  
Sbjct: 8   MDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S 65

Query: 516 GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
               L  L +L+LS+N I      L    P+L  L L GN L+ I
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 415
           +V    L     N   I     E   +  L L    +  +   L     L+ L LS N+I
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRI 83

Query: 416 KDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--F 471
               D +   L +L+ L L  N L+ + + +  K +  L+ LDL    + +L +     F
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVF 143

Query: 472 SSLPHLQELYLRRMQLREAP 491
             LP L  L     + +EAP
Sbjct: 144 KLLPQLTYLDGYDREDQEAP 163

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 9e-07
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           +LD   +     E    +   +L+ L L  + L    +++ +L +L+ L+LS+N +    
Sbjct: 30  VLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGL 87

Query: 515 EG-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPL 557
           +   + L +LT L+LS N +  +   L  L+    L++L L    +
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDIS-TLEPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 26/156 (16%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ 441
           + +D+ R    EL     + A+++ L+L   K  D   + +     +L  L L N  L  
Sbjct: 6   SGMDMKRRIHLEL--RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS 63

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLR 501
           V       +P L+ L+LS N      +     LP+L  L L   +L++       +  L 
Sbjct: 64  V--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-------ISTLE 114

Query: 502 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537
            L              K L  L  LDL +  ++ L 
Sbjct: 115 PL--------------KKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L    +N  K++        L  L++ +  L  + + + +L  LK L++S N I    D 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM 89

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N+LK++ +   L +   L      N  +T+L +
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
           V+L+ L L +  +  +  +L  LP L  L +S N++      + E L  L  L++S N +
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 104 MKIPD 108
             I  
Sbjct: 108 KDIST 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D   +   ++       +NL      N  + S+  +L    K+ KL++  N++    + L
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N L  +     +  L  L  LDL    + ++ 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 28/127 (22%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
             +    +    A+   +  L +    L  +SN                         + 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------------------LP 68

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L +L +L+L +NRI      ++    +L    +  N L  +     L KL  L +LDL 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 262 SNQLKEY 268
           + ++   
Sbjct: 129 NCEVTNL 135

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 3/107 (2%)

Query: 455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP 514
           ++ L+  +  + +   +++    +EL LR  ++         L Q   +D S N ++ + 
Sbjct: 1   MVKLTAEL--IEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL- 57

Query: 515 EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 561
           +GF  L  L  L +++N I  +   L    P L  L L  N L  + 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 8/129 (6%)

Query: 432 LKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 491
           +KL    + Q  +  + +    + LDL      + EN   ++L     +     ++R+  
Sbjct: 2   VKLTAELIEQ--AAQYTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKL- 57

Query: 492 TDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLE--PSLQ 548
                L++L+ L ++ N +  I EG  + L  LTEL L++N++  L  +L  L    SL 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG-DLDPLASLKSLT 116

Query: 549 ALRLDGNPL 557
            L +  NP+
Sbjct: 117 YLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 24/162 (14%)

Query: 346 EDLITMATRLS--VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
            +LI  A + +  V  +EL L G  +  I +      +   +D S N I++L        
Sbjct: 6   AELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FPLLR 64

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI 462
            L+TL+++ N+I    + +  +L  L+ L L NN L ++   D    +  L  L +  N 
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN- 123

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
                  P ++  H    Y   +        I ++ Q+R+LD
Sbjct: 124 -------PVTNKKH----YRLYV--------IYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 4   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FP 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPE--DLADCSKMSKLDVE 168
               L     ++N++  +   L + L +L++   +NN +  L +   LA    ++ L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 169 GNKLTVLSN 177
            N +T   +
Sbjct: 122 RNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 25/153 (16%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           + L+   I++   + ++    + L L   KI    + +  +L     +   +N +R++  
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 445 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 504
           DGF  +  L+ L ++ N           +LP L EL L    L E   D+  L       
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPL------- 109

Query: 505 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 537
                         +L SLT L +  N ++   
Sbjct: 110 -------------ASLKSLTYLCILRNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +  R   LDL   +I  I +  +           +N +  L      L +L TL +++N+
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 265 LK---EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
           +    E   +A    L+ L L+NNSL  L     +  + +L  L +  NP+
Sbjct: 76  ICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 6/122 (4%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
           +   I    +   +  +  +LD+ G K+ V+ N L A+      +  S N +  + +   
Sbjct: 5   TAELIEQAAQ-YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L RL  L ++ NRI  I   +      L E  + NN+L  L     L  L  L  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 262 SN 263
            N
Sbjct: 122 RN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             AV  ++L L    I  ++     L     ++ S N++ +L      L  LK+L V+ N
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN 74

Query: 102 SIMKIPDEIGSA-TALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
            I +I + +  A   L +   ++N L EL     L    +L+      N +T+   
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + ++   I +   +  +A    + D    ++  + +             S+N I  L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLD 213
                ++  L V  N++  +   L  +   LTELI + N L  + +   + SL  L  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 214 LHQNRILSIP 223
           + +N + +  
Sbjct: 120 ILRNPVTNKK 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 473 SLPHLQELYL--RRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD 530
           +   ++EL L   R    +        ++L  L      L SI      L  L +L+LSD
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD 73

Query: 531 NNISALPPELGLLEPSLQALRLDGNPLRSI 560
           N +S     L    P+L  L L GN ++ +
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS 512
           L + +   N   L           L+ L    + L     ++ +L +L+ L+LS N +  
Sbjct: 22  LVLDNSRSNEGKLEGL--TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 513 IPEGF-KNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPL 557
             E   +   +LT L+LS N I  L   +  L+   +L++L L    +
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK- 266
           + + LD  ++    +         L      N  L+++ A L KL+KL  L+L  N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 267 --EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
             E   E C   L+ L+LS N +  L     + K+  L+ L L    +
Sbjct: 79  GLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 24/148 (16%)

Query: 360 KELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 417
           KEL L+    +    E    E  E+  L      +  +   L     L+ L LS N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNRVSG 78

Query: 418 WPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
             + +     +L+ L L  N ++ + + +  K +  L+ LDL             ++L  
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC--------EVTNLND 130

Query: 477 LQELYLRRMQLREAPTDILRLQQLRILD 504
               Y   +           L QL  LD
Sbjct: 131 ----YRENV--------FKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 8/121 (6%)

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPMLQILDLSYN-IASLPENPPFSSLPHLQE 479
              + S +  L LDN+   +   +G   +   L+ L      + S+        L  L++
Sbjct: 12  RNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---NLPKLNKLKK 68

Query: 480 LYLRRMQL-REAPTDILRLQQLRILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISAL 536
           L L   ++         +   L  L+LS N ++ +      K L +L  LDL +  ++ L
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128

Query: 537 P 537
            
Sbjct: 129 N 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
            +L+ L   +  +  +  +L  L  L  L +S N++S     + E    L  L++S N I
Sbjct: 42  EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 104 MKIPD 108
             +  
Sbjct: 101 KDLST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.0 bits (99), Expect = 8e-05
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L  + +N  KL+        L  L+  +  L+ + A + +L+ LK L++S N +    + 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N++K+L +   L +  NL      N  +T+L +
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D S +   +L         L      N  +TS+  +L   +K+ KL++  N+++     L
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N +  +     +  L  L  LDL    + ++ 
Sbjct: 84  AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 42/242 (17%), Positives = 78/242 (32%), Gaps = 47/242 (19%)

Query: 382 ITKLDLSRNSIQE-----LPPELSSC-ASLQTLILSRNKIKDWP-----DAILTSLSSLS 430
           IT LDL  N              S+  AS+ +L L  N +           +    ++++
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 431 CLKLDNNPLR----QVPSDGFKDIP-MLQILDLSYN---------IASLPENPPFSSLPH 476
            L L  N L        +     IP  +  LDLS N         +A +  + P     H
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP----NH 226

Query: 477 LQELYLRRMQLREAPTDIL-----RLQQLRILDLSQNSL--------QSIPEGFKNLTSL 523
           +  L L    L     + L      L+ L+ + L  + +        +++   F N+  +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 524 TELDLSDNNIS-----ALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 578
             +D +   I       +   +  L        L    L   ++   +     +   L++
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRE 346

Query: 579 KI 580
            I
Sbjct: 347 SI 348

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 65/401 (16%), Positives = 118/401 (29%), Gaps = 101/401 (25%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKSLDVSFNSIMKIPDEIGSA 113
           ++E       +T L++S N L       L  A       + SL++S NS+        ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NS 68

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKL 172
             LV+       L  +P+++   LNLS    S      L + LA     ++ LD+  N  
Sbjct: 69  DELVQI------LAAIPANV-TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 173 T-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--------LIRLDLHQNRI 219
           +                 +T L    N L    ++   L +        +  L+L  N +
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------- 272
                +   C  LA+F                 + + +LDL +N L              
Sbjct: 180 -----ASKNCAELAKFLASIP------------ASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 273 CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
               +  L+L  N L G     L      +  L+ + L  + +           +    K
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCK 274

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-----GEI 382
            L +  P                    +    KE+             I        G+ 
Sbjct: 275 ALGAAFPNI-------------QKIILVDKNGKEIHPSHSIP------ISNLIRELSGKA 315

Query: 383 TKLDLSRNSI------QELPPELSSCASLQTLILSRNKIKD 417
               L    +      Q    +L+    L+  I +   + +
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLLE 356

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 60/288 (20%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPL-LTVLNVSHNKLSE-----LPAAIGELH-MLK 94
           +  L L+ NN+      +L +   N P  +T LN+S N L       L   +  +   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           SL++S N +        S+  LVK       L  +P ++   L+L     S+   +   +
Sbjct: 84  SLNLSGNFL-----SYKSSDELVKT------LAAIPFTI-TVLDLGWNDFSSKSSSEFKQ 131

Query: 155 DLADC-SKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208
             ++  + ++ L++ GN L       L   L A    +  L    N L    +    L++
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--SKNCAELAK 189

Query: 209 --------LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAEL 249
                   +  LDL  N +       +    S     +    +  N L       L    
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLS 288
             L  L T+ L  + +K    E C+          ++ ++D +   + 
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 40/195 (20%)

Query: 399 LSSCASLQTLILSRNKIKDWP-----DAILTSLSSLSCLKLDNNPLR----QVPSDGFKD 449
            S    + +L LS N +          A   + +S++ L L  N L              
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 450 IP-MLQILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL---- 495
           IP  +  L+LS N         +       PF     +  L L         +       
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPF----TITVLDLGWNDFSSKSSSEFKQAF 133

Query: 496 --RLQQLRILDLSQNSL-----QSIPEGFKNL-TSLTELDLSDNNIS-----ALPPELGL 542
                 +  L+L  N L       + +    +  ++  L+L  NN++      L   L  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 543 LEPSLQALRLDGNPL 557
           +  S+ +L L  N L
Sbjct: 194 IPASVTSLDLSANLL 208

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 57.3 bits (137), Expect = 5e-09
 Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 19/176 (10%)

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
           W   +  + ++S     +L P L +   L  L +              +L SL  +    
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLE-IISGG 204

Query: 437 NPLRQVPSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQELYLRRMQL 487
            P   V      D+P L+ L L            +            P+L+ L +   + 
Sbjct: 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264

Query: 488 REAPTDIL----RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS 534
           +    ++      L QL  +D+S   L     + + +    +  L  +++  N +S
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 45/245 (18%)

Query: 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM---LTELIASK 193
           + +  +       + + + + +  +            +       SW     L+ ++ + 
Sbjct: 112 ITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF------------------ 235
            LLN +     +   + +      + L I S       + +                   
Sbjct: 172 PLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231

Query: 236 -YMGNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEA-----CQLRLSVLDLSNNSL 287
            Y  +  ++         +   L  L +   + +   VE         +L  +D+S   L
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 288 SG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           +      L   + K+  L+ + +  N L           +  + K L+  LP   D   S
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYL-----------SDEMKKELQKSLPMKIDVSDS 340

Query: 343 TTKED 347
              +D
Sbjct: 341 QEYDD 345

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 6e-04
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 46/249 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              ++         +             +S  +  +L   +  + +L +L +   + + I
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                              LK L         +      ++ +  +    +D   + KL 
Sbjct: 188 GK------------KPRPNLKSL--------EIISGGLPDSVVEDILG--SDLPNLEKLV 225

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--- 223
           +         +  +  +  L                      L  L +      ++    
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSK--------------DRFPNLKWLGIVDAEEQNVVVEM 271

Query: 224 -SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277
                    L    +    L+      L   + K+  L  +++  N L +   +  Q  L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

Query: 278 SV-LDLSNN 285
            + +D+S++
Sbjct: 332 PMKIDVSDS 340

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 510 LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRLDGNPLR 558
             S+P  F      TEL L+ NN++ALPP  GLL+  P+L+   L  NP R
Sbjct: 22  WASLPTAF--PVDTTELVLTGNNLTALPP--GLLDALPALRTAHLGANPWR 68

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 500 LRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN 531
              L L+ N+L ++P G    L +L    L  N
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 399 LSSCASLQTLILSRNKIKD----WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI---- 450
           ++ C  ++TL++  +   +    W   +    +SL  L        ++     + I    
Sbjct: 160 VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219

Query: 451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLS 506
             L  + +  +   L     F +  +L+E     +       +    ++  ++L  L LS
Sbjct: 220 RSLVSVKVG-DFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 507 QNSLQSIPEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 565
                 +P  F     + +LDL      +     L    P+L+ L          R  I 
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET--------RNVIG 330

Query: 566 DRGTKAVLKYLKD 578
           DRG + + +Y K 
Sbjct: 331 DRGLEVLAQYCKQ 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 79/534 (14%), Positives = 162/534 (30%), Gaps = 104/534 (19%)

Query: 40  KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLK 94
               AV    +I     +  +  +L+  P     N+  +         + A       L+
Sbjct: 51  GNCYAVSPATVIRRFPKVRSV--ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLE 108

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
            + +     M + D+      L     S    K L   L  C   S           L  
Sbjct: 109 EIRLKR---MVVTDD-----CLELIAKSFKNFKVL--VLSSCEGFST--------DGLAA 150

Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIA----SWTMLTELIASKNLLNGMPETIGSLSR-- 208
             A C  + +LD+  + +  +S + ++    ++T L  L  S          +  L    
Sbjct: 151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210

Query: 209 --LIRLDLHQNRILS-IPSSISGCCSLAEFYMG-------NNALSALPAELGKLSKLGTL 258
             L  L L++   L  + + +     L E   G        +  S L   L    +L  L
Sbjct: 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 259 DLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 316
               + +  Y      +  RL+ L+LS  ++            L KLL     L+ L   
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ--------SYDLVKLLCQCPKLQRL--W 320

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
           +++    A L+ L S   +                        +EL +       +   +
Sbjct: 321 VLDYIEDAGLEVLASTCKDL-----------------------RELRVFPSEPFVMEPNV 357

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKL- 434
                     L+   +  +      C  L++++    ++ +     I  +  +++  +L 
Sbjct: 358 ---------ALTEQGLVSV---SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405

Query: 435 ------DNNPLRQVPSDGFKDI----PMLQILDLSYNIASLPENPPFSSLPHLQELYLRR 484
                  +    +    GF  I      L+ L LS  +         +    ++ L +  
Sbjct: 406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAF 465

Query: 485 MQLR-EAPTDILR-LQQLRILDLSQNSL--QSIPEGFKNLTSLTELDLSDNNIS 534
                     +L     LR L++       +++      L ++  L +S  ++S
Sbjct: 466 AGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 45/197 (22%)

Query: 382 ITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDW-PDAI---LTSLSSLSCL 432
           IT L LS N +       L   L+   S+  L L    + D   + +   L     L  L
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQEL 216

Query: 433 KLDNNPLR----QVPSDGFKDIPMLQILDLSYN---------IASLPENPPFSSLPHLQE 479
            +  N          +   ++ P L++L L +N         +  L           +  
Sbjct: 217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAA--EGGARVVV 274

Query: 480 LYLRRMQLREA----------------PTDILRLQQLRILDLSQNSL-----QSIPEGFK 518
                  + E                    + R  +L + DL  +           +  +
Sbjct: 275 SLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLR 334

Query: 519 NLTSLTELDLSDNNISA 535
               +  L     +  +
Sbjct: 335 VEGEVRALLEQLGSSGS 351

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 14/89 (15%)

Query: 381 EITKLDLSRN---SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSC--LKLD 435
           E+  L+LS N    + ++   +    +L+ L LS N++K   +  L  +  L    L LD
Sbjct: 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE--LDKIKGLKLEELWLD 228

Query: 436 NNPLRQVPSDG-------FKDIPMLQILD 457
            N L     D         +  P L  LD
Sbjct: 229 GNSLCDTFRDQSTYISAIRERFPKLLRLD 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	583
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.56
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.54
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.52
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.98
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.79
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.02
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.97
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.57
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.55
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.7
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	90.85

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.6e-51  Score=433.34  Aligned_cols=495  Identities=20%  Similarity=0.212  Sum_probs=421.8

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chhhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~   88 (583)
                      ..+++|++++++++|..++               +++++|++++|.++.++. .|+++++|++|++++|.++.+ |.+|.
T Consensus        13 ~~~~~c~~~~l~~ip~~~~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~   77 (606)
T 3vq2_A           13 NITYQCMDQKLSKVPDDIP---------------SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWH   77 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred             CCceEccCCCcccCCCCCC---------------CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhh
Confidence            3689999999999999774               479999999999998875 899999999999999999987 55899


Q ss_pred             CCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccC--CCCcccccCCCCcE
Q 007962           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCIT--SLPEDLADCSKMSK  164 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~--~l~~~l~~l~~L~~  164 (583)
                      ++++|++|++++|.++.+ |..|.++++|++|++++|.+..++ ..++++++|++|++++|.+.  .+|..+.++++|++
T Consensus        78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  157 (606)
T 3vq2_A           78 GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVH  157 (606)
T ss_dssp             TCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCE
T ss_pred             chhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCE
Confidence            999999999999999876 778999999999999999998776 67999999999999999998  47889999999999


Q ss_pred             EEecCCcceeechhhhcccccCc----EEEcCCCcCCccchhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEc-
Q 007962          165 LDVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM-  237 (583)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l-  237 (583)
                      |++++|.+..+....++.+.+|+    .+++++|.+..++.......+|+.|++++|.+.  ..+..+..++.|+.+.+ 
T Consensus       158 L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~  237 (606)
T 3vq2_A          158 VDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI  237 (606)
T ss_dssp             EECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             EEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhcccccccccccc
Confidence            99999999998887788887765    799999999888776666669999999999775  33445556666655554 


Q ss_pred             --------------------------------CCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCC
Q 007962          238 --------------------------------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (583)
Q Consensus       238 --------------------------------~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~  285 (583)
                                                      ..+.+......+..+++|+.++++++.+..++......+++++++++|
T Consensus       238 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n  317 (606)
T 3vq2_A          238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC  317 (606)
T ss_dssp             EECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESC
T ss_pred             ccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccc
Confidence                                            334444333337788999999999999888874444456999999999


Q ss_pred             CCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecC
Q 007962          286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (583)
Q Consensus       286 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  365 (583)
                      .+..+| .+ .+++|+++++++|......  .                                   .....+++.++++
T Consensus       318 ~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~-----------------------------------~~~l~~L~~L~ls  358 (606)
T 3vq2_A          318 QLKQFP-TL-DLPFLKSLTLTMNKGSISF--K-----------------------------------KVALPSLSYLDLS  358 (606)
T ss_dssp             CCSSCC-CC-CCSSCCEEEEESCSSCEEC--C-----------------------------------CCCCTTCCEEECC
T ss_pred             cCcccc-cC-CCCccceeeccCCcCccch--h-----------------------------------hccCCCCCEEECc
Confidence            997787 45 8999999999988432110  0                                   1123578999999


Q ss_pred             CCCCccC---ChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCcEEecCCCCCcc
Q 007962          366 GMNLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQ  441 (583)
Q Consensus       366 ~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~  441 (583)
                      +|.+..+   +..+..+++|++|++++|.+..++..+..+++|++|++++|.+..... ..+..+++|+.|++++|.++.
T Consensus       359 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  438 (606)
T 3vq2_A          359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI  438 (606)
T ss_dssp             SSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE
T ss_pred             CCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc
Confidence            9998765   778888999999999999999988889999999999999999888766 678899999999999999999


Q ss_pred             CCCCccCCCCcccEEeCCCCccCC-CCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCcc-chhhc
Q 007962          442 VPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFK  518 (583)
Q Consensus       442 ~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~  518 (583)
                      .....+.++++|++|++++|.+.+ ..+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..+.
T Consensus       439 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  518 (606)
T 3vq2_A          439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN  518 (606)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT
T ss_pred             cchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc
Confidence            887789999999999999999987 4677899999999999999999866 55678999999999999999976 78899


Q ss_pred             CCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       519 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      .+++|++|++++|+|+.+|+.+...+++|+.|++++|++..
T Consensus       519 ~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          519 QLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence            99999999999999999999866664479999999999863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.9e-50  Score=425.03  Aligned_cols=498  Identities=22%  Similarity=0.276  Sum_probs=418.0

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCccc-chhhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l-~~~~~   88 (583)
                      ...+||++.+++++|..++               ..+++|++++|.++.+ +..|.++++|++|++++|.+..+ |.+|.
T Consensus        14 ~~~~~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   78 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP---------------NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ   78 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC---------------TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred             CceEECCCCCcccCcCCCC---------------CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence            4579999999999999885               4699999999999988 46899999999999999999976 66899


Q ss_pred             CCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCCCC-cccccCCCCcEE
Q 007962           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL  165 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L  165 (583)
                      ++++|++|++++|.++.+ |..+.++++|++|++++|.++.+ +..+..+++|++|++++|.+..++ ..+..+++|++|
T Consensus        79 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  158 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL  158 (606)
T ss_dssp             TCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE
T ss_pred             CccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEE
Confidence            999999999999999854 67899999999999999999987 567899999999999999998763 345559999999


Q ss_pred             EecCCcceeechhhhcccccCc--EEEcCCCcCCccchhhcCCccccEEEccCCcCc-----------------------
Q 007962          166 DVEGNKLTVLSNNLIASWTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-----------------------  220 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~--~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-----------------------  220 (583)
                      ++++|.+..+....+..+++|+  .+++++|.+..++........|+.++++++...                       
T Consensus       159 ~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~  238 (606)
T 3t6q_A          159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM  238 (606)
T ss_dssp             ECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTS
T ss_pred             EcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccc
Confidence            9999999999888899999999  899999999877665556678999998877411                       


Q ss_pred             ---cc-CCCCcCCC--CCcEEEcCCCCCccCch-hhhCCCCCCEEEccCCccccccccccc-ccccEEECcCCCCCCC-C
Q 007962          221 ---SI-PSSISGCC--SLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGL-P  291 (583)
Q Consensus       221 ---~~-~~~~~~~~--~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~-~  291 (583)
                         .+ +..+..+.  +|+.+++++|.+..++. .++.+++|++|++++|.++.++..... .+|++|++++|.+..+ +
T Consensus       239 ~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred             cccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch
Confidence               00 01122222  68899999999987755 488899999999999999887765433 4599999999998886 4


Q ss_pred             hhhcccCCCcEEecCCCccc-cccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc
Q 007962          292 PEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS  370 (583)
Q Consensus       292 ~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~  370 (583)
                      ..+..+++|+++++++|.+. .++...+.                                   ...+++.+++++|.+.
T Consensus       319 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----------------------------------~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          319 ISASNFPSLTHLSIKGNTKRLELGTGCLE-----------------------------------NLENLRELDLSHDDIE  363 (606)
T ss_dssp             GCGGGCTTCSEEECCSCSSCCBCCSSTTT-----------------------------------TCTTCCEEECCSSCCC
T ss_pred             hhhhccCcCCEEECCCCCcccccchhhhh-----------------------------------ccCcCCEEECCCCccc
Confidence            46888999999999998764 22222111                                   2247899999999887


Q ss_pred             cC---ChhhhccCCccEEEcCCCCCCcC-CccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCcEEecCCCCCccCCCC
Q 007962          371 AI---PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSD  445 (583)
Q Consensus       371 ~~---~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~  445 (583)
                      .+   +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..... ..+..+++|+.|++++|.+......
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  443 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ  443 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTT
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHH
Confidence            65   55677889999999999998874 5678899999999999999887644 4478999999999999999998888


Q ss_pred             ccCCCCcccEEeCCCCccCCC---CCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCc-cchhhcCC
Q 007962          446 GFKDIPMLQILDLSYNIASLP---ENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQS-IPEGFKNL  520 (583)
Q Consensus       446 ~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~-l~~~l~~~  520 (583)
                      .+.++++|++|++++|.+.+.   ....+..+++|++|++++|.++.+ |..+..+++|++|++++|.++. .|+.+.++
T Consensus       444 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  523 (606)
T 3t6q_A          444 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL  523 (606)
T ss_dssp             TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred             HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence            899999999999999998752   335688899999999999999976 5678899999999999999985 46789999


Q ss_pred             CCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       521 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      ++| +|++++|+++.+++..+..+++|+.|++++|++..
T Consensus       524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            999 99999999999888776666999999999999863

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.9e-49  Score=420.58  Aligned_cols=533  Identities=23%  Similarity=0.318  Sum_probs=295.4

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chhhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~   88 (583)
                      .+.+||++++++++|..+..               ++++|++++|.++.++. .|.++++|++|++++|.+..+ |.+|.
T Consensus         6 ~~~~~cs~~~L~~ip~~~~~---------------~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   70 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLPT---------------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ   70 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSCT---------------TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred             CCeeECCCCCccccccccCC---------------CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence            45789999999988886643               45555555555555543 355555555555555555544 33455


Q ss_pred             CCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCC-CcccccCCCCcEE
Q 007962           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL  165 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L  165 (583)
                      ++++|++|++++|.++.+|. .|.++++|++|++++|.+..++ ..+.++++|++|++++|.+..+ +..+..+++|++|
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            55555555555555555544 3555555555555555555443 3455555555555555555433 2334455555555


Q ss_pred             EecCCcceeechhhhc--ccccCcEEEcCCCcCCccc-hhhcC---------------------------CccccEEEcc
Q 007962          166 DVEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGS---------------------------LSRLIRLDLH  215 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~--~~~~L~~L~l~~~~~~~~~-~~l~~---------------------------~~~L~~L~l~  215 (583)
                      ++++|.+..+....+.  .+++|+.|++++|.+..++ ..+..                           .++|+.|+++
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence            5555555544443332  2345555555555443321 11111                           1334445555


Q ss_pred             CCcCccc-CCCCcCCCC--CcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccccc--ccccccEEECcCCCCC-
Q 007962          216 QNRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLS-  288 (583)
Q Consensus       216 ~~~~~~~-~~~~~~~~~--L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~--~~~~L~~L~l~~~~~~-  288 (583)
                      +|.+... +..+..++.  |+.|++++|.+..+ +..++.+++|++|++++|.+.......  ...+|+.++++++... 
T Consensus       231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            5544422 333444432  55555555555533 234555555555555555554433211  1123444544443221 


Q ss_pred             -----CCCh----hhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccc
Q 007962          289 -----GLPP----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS  359 (583)
Q Consensus       289 -----~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  359 (583)
                           .++.    .+..+++|+++++++|.+..+....+....  .++.+  .+.......... ...  ........++
T Consensus       311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~L~~L--~Ls~n~~~~~~l-~~~--~f~~~~~~~L  383 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI--NLKYL--SLSNSFTSLRTL-TNE--TFVSLAHSPL  383 (680)
T ss_dssp             ------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCT--TCCEE--ECTTCBSCCCEE-CTT--TTGGGTTSCC
T ss_pred             ccccccccccChhhcccCCCCCEEECCCCccCCCChhHhcccc--CCcEE--ECCCCchhhhhc-chh--hhcccccCcC
Confidence                 1111    234444445555544444433322221100  00000  000000000000 000  0000011467


Q ss_pred             ceeecCCCCCccC-ChhhhccCCccEEEcCCCCCCc-CC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962          360 KELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (583)
Q Consensus       360 ~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (583)
                      +.+++++|.+..+ +..+..+++|+.|++++|.+.. ++ ..+..+++|++|++++|.+.......|..+++|+.|++++
T Consensus       384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~  463 (680)
T 1ziw_A          384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR  463 (680)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred             ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence            7777877777654 3455567788888888887764 44 4577777888888888877776666677777777777777


Q ss_pred             CCCcc--CCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccccc---------chhccCcccEEeC
Q 007962          437 NPLRQ--VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT---------DILRLQQLRILDL  505 (583)
Q Consensus       437 ~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~---------~~~~~~~L~~L~l  505 (583)
                      |.+..  ..+..|.++++|++|++++|.++...+..+..+++|++|++++|.++.++.         .+..+++|++|++
T Consensus       464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L  543 (680)
T 1ziw_A          464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL  543 (680)
T ss_dssp             SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred             ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence            77653  233447777777777777777777766677777777777777777775422         2556777777777


Q ss_pred             CCCcCCccchh-hcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHh
Q 007962          506 SQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL  565 (583)
Q Consensus       506 ~~n~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  565 (583)
                      ++|.++.+|.. +..+++|++|++++|+|+.+|+..+..+++|+.|++++|+++.+++..+
T Consensus       544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  604 (680)
T 1ziw_A          544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF  604 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred             CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence            77777777643 6777777777777777777777766656777777777777777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=1.1e-50  Score=435.67  Aligned_cols=503  Identities=27%  Similarity=0.337  Sum_probs=317.9

Q ss_pred             HHHhhhceeeccCCcCCC-CCh--hhhhcccccCCCCCcccccCccEEEcCCCcchh-hhHh-hCCCCCCcEEEcCCCCC
Q 007962            6 KAARTSGSLNLSNRSLRD-VPN--EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKED-LRNLPLLTVLNVSHNKL   80 (583)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~-l~~~-~~~~~~L~~L~L~~~~l   80 (583)
                      .+.+.++++|++++.+.. +|.  .+             .++++|++|++++|.++. +|.. +.++++|++|++++|.+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~l-------------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           97 KCSASLTSLDLSRNSLSGPVTTLTSL-------------GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             CCCTTCCEEECCSSEEEEEGGGGGGG-------------GGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             ccCCCCCEEECCCCcCCCcCCChHHH-------------hCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence            345778899999988873 444  22             225566666666665552 2222 25556666666666655


Q ss_pred             cccch-h---hhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccC-CCCcc
Q 007962           81 SELPA-A---IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPED  155 (583)
Q Consensus        81 ~~l~~-~---~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~  155 (583)
                      +..+. .   +.++++|++|++++|.++.... +..+++|++|++++|.+...+..+..+++|++|++++|.+. .++..
T Consensus       164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  242 (768)
T 3rgz_A          164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA  242 (768)
T ss_dssp             EEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH
T ss_pred             CCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH
Confidence            53322 2   4555555555555555543221 24555555555555555543333555555555555555554 33444


Q ss_pred             cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCC-ccchhhcCC-ccccEEEccCCcCc-ccCCCCcCCCCC
Q 007962          156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL-SRLIRLDLHQNRIL-SIPSSISGCCSL  232 (583)
Q Consensus       156 l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~-~~L~~L~l~~~~~~-~~~~~~~~~~~L  232 (583)
                      +..+++|++|++++|.+....+.  ..+++|++|++++|.+. .+|..+... ++|++|++++|.+. .+|..+..+++|
T Consensus       243 l~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L  320 (768)
T 3rgz_A          243 ISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLL  320 (768)
T ss_dssp             TTTCSSCCEEECCSSCCEESCCC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTC
T ss_pred             HhcCCCCCEEECCCCcccCccCc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCc
Confidence            55555555555555554432221  14445555555555443 344443332 45555555555444 334444445555


Q ss_pred             cEEEcCCCCCc-cCchh-hhCCCCCCEEEccCCccc-ccccccc----------------------------cccccEEE
Q 007962          233 AEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLK-EYCVEAC----------------------------QLRLSVLD  281 (583)
Q Consensus       233 ~~L~l~~~~~~-~l~~~-l~~~~~L~~L~l~~~~l~-~~~~~~~----------------------------~~~L~~L~  281 (583)
                      ++|++++|.+. .+|.. +..+++|++|++++|.+. .++....                            ..+|++|+
T Consensus       321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~  400 (768)
T 3rgz_A          321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY  400 (768)
T ss_dssp             CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred             cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence            55555555444 34432 444445555555544443 2222111                            12355555


Q ss_pred             CcCCCCCC-CChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccc
Q 007962          282 LSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK  360 (583)
Q Consensus       282 l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  360 (583)
                      +++|.+.+ ++..+.++++|++|++++|.+......                                   ......+++
T Consensus       401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~-----------------------------------~l~~l~~L~  445 (768)
T 3rgz_A          401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-----------------------------------SLGSLSKLR  445 (768)
T ss_dssp             CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCG-----------------------------------GGGGCTTCC
T ss_pred             CCCCccccccCHHHhcCCCCCEEECcCCcccCcccH-----------------------------------HHhcCCCCC
Confidence            55555543 444555556666666665554322111                                   112235788


Q ss_pred             eeecCCCCCc-cCChhhhccCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC
Q 007962          361 ELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (583)
Q Consensus       361 ~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  438 (583)
                      .+++++|.+. .++..+..+++|++|++++|.+.. +|..+..+++|++|++++|++.+..+..++.+++|+.|++++|+
T Consensus       446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS  525 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCc
Confidence            8999998887 677778888999999999998884 77788889999999999999987777778889999999999999


Q ss_pred             CccCCCCccCCCCcccEEeCCCCccCCCCC--------------------------------------------------
Q 007962          439 LRQVPSDGFKDIPMLQILDLSYNIASLPEN--------------------------------------------------  468 (583)
Q Consensus       439 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------------------------------------------  468 (583)
                      +.+..+..+..+++|++|++++|.+++..+                                                  
T Consensus       526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  605 (768)
T 3rgz_A          526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN  605 (768)
T ss_dssp             CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGG
T ss_pred             ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhh
Confidence            887666668889999999999887653222                                                  


Q ss_pred             --------------------CCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCC-ccchhhcCCCCCCEE
Q 007962          469 --------------------PPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTEL  526 (583)
Q Consensus       469 --------------------~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L  526 (583)
                                          ..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++ .+|..+.++++|++|
T Consensus       606 ~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~L  685 (768)
T 3rgz_A          606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL  685 (768)
T ss_dssp             GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEE
Confidence                                23455688999999999988 78889999999999999999998 789999999999999


Q ss_pred             eCCCCCCC-cCCCCccccccccceeeccCCCCccc
Q 007962          527 DLSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSI  560 (583)
Q Consensus       527 ~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~~~~~~  560 (583)
                      ++++|+++ .+|..+.. +++|++|++++|+++..
T Consensus       686 dLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          686 DLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             ECCSSCCEECCCGGGGG-CCCCSEEECCSSEEEEE
T ss_pred             ECCCCcccCcCChHHhC-CCCCCEEECcCCccccc
Confidence            99999999 45554444 48999999999988643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.2e-50  Score=430.45  Aligned_cols=532  Identities=27%  Similarity=0.290  Sum_probs=424.0

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-hhhH--hhCCCCCCcEEEcCCCCCcc-cc
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKE--DLRNLPLLTVLNVSHNKLSE-LP   84 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~l~~--~~~~~~~L~~L~L~~~~l~~-l~   84 (583)
                      +.+..++++.+++..+|..             +..+++|++|+|++|.++ .+|.  .++++++|++|++++|.+.. +|
T Consensus        77 ~~L~~l~~~~~~~~~l~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~  143 (768)
T 3rgz_A           77 TGLESLFLSNSHINGSVSG-------------FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK  143 (768)
T ss_dssp             TTCCEEECTTSCEEECCCC-------------CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS
T ss_pred             CcccccCCcCCCcCCCchh-------------hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC
Confidence            5566666666665444443             445899999999999998 4676  89999999999999998873 44


Q ss_pred             hhh-hCCCCccEEEccCCccccCC-cc---ccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccC
Q 007962           85 AAI-GELHMLKSLDVSFNSIMKIP-DE---IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC  159 (583)
Q Consensus        85 ~~~-~~~~~L~~L~L~~~~l~~l~-~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l  159 (583)
                      ..+ .++++|++|++++|.++..+ ..   +.++++|++|++++|.+..... +..+++|++|++++|.+......+..+
T Consensus       144 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l  222 (768)
T 3rgz_A          144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDC  222 (768)
T ss_dssp             CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTC
T ss_pred             HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccC
Confidence            444 78999999999999998543 33   7889999999999999886543 388999999999999998655559999


Q ss_pred             CCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCc-ccCCCCcC-CCCCcEEEc
Q 007962          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISG-CCSLAEFYM  237 (583)
Q Consensus       160 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~L~~L~l  237 (583)
                      ++|++|++++|.+.......+..+++|++|++++|.+....... .+++|++|++++|.+. .+|..+.. +++|++|++
T Consensus       223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~L  301 (768)
T 3rgz_A          223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL  301 (768)
T ss_dssp             CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEEC
T ss_pred             CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEEC
Confidence            99999999999999777777999999999999999986433223 7899999999999988 77887766 499999999


Q ss_pred             CCCCCc-cCchhhhCCCCCCEEEccCCccc-ccccc--cccccccEEECcCCCCC-CCChhhcccC-CCcEEecCCCccc
Q 007962          238 GNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVE--ACQLRLSVLDLSNNSLS-GLPPEIGKMT-TLRKLLLTGNPLR  311 (583)
Q Consensus       238 ~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~--~~~~~L~~L~l~~~~~~-~~~~~~~~~~-~L~~L~l~~~~~~  311 (583)
                      ++|.+. .+|..++.+++|++|++++|.+. .++..  ....+|++|++++|.+. .+|..+.+++ +|+++++++|.+.
T Consensus       302 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~  381 (768)
T 3rgz_A          302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS  381 (768)
T ss_dssp             CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred             cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence            999998 77889999999999999999987 56544  23346999999999988 5788888887 9999999999875


Q ss_pred             cccccccCCCcHHHHHHHHhcCCCCCCcc-cccchhhhhhhhhccccccceeecCCCCCc-cCChhhhccCCccEEEcCC
Q 007962          312 TLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR  389 (583)
Q Consensus       312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~  389 (583)
                      ......+....          ........ .................+++.+++++|.+. .++..+..+++|++|++++
T Consensus       382 ~~~~~~~~~~~----------~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~  451 (768)
T 3rgz_A          382 GPILPNLCQNP----------KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL  451 (768)
T ss_dssp             EECCTTTTCST----------TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred             CCcChhhhhcc----------cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence            42221111100          00000000 000000011222333467889999999887 6777888889999999999


Q ss_pred             CCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCC
Q 007962          390 NSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN  468 (583)
Q Consensus       390 ~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  468 (583)
                      |.+.. +|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..+.++..+++|++|++++|.+.+..+
T Consensus       452 n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             CcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence            98884 77788899999999999999998777778999999999999999997666778899999999999999988888


Q ss_pred             CCCCCCCccceEeccccccc-ccccch-----------------------------------------------------
Q 007962          469 PPFSSLPHLQELYLRRMQLR-EAPTDI-----------------------------------------------------  494 (583)
Q Consensus       469 ~~~~~l~~L~~L~l~~~~l~-~~~~~~-----------------------------------------------------  494 (583)
                      ..+..+++|+.|++++|.++ .+|..+                                                     
T Consensus       532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (768)
T 3rgz_A          532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN  611 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred             HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence            88999999999999999776 444432                                                     


Q ss_pred             -----------------hccCcccEEeCCCCcCC-ccchhhcCCCCCCEEeCCCCCCC-cCCCCccccccccceeeccCC
Q 007962          495 -----------------LRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGN  555 (583)
Q Consensus       495 -----------------~~~~~L~~L~l~~n~l~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~~  555 (583)
                                       ..+++|+.|++++|.++ .+|..+.++++|+.|++++|+++ .+|..+..+ ++|++|++++|
T Consensus       612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-~~L~~LdLs~N  690 (768)
T 3rgz_A          612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RGLNILDLSSN  690 (768)
T ss_dssp             CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSS
T ss_pred             ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC-CCCCEEECCCC
Confidence                             23577899999999998 78999999999999999999999 556665554 99999999999


Q ss_pred             CCccchhHHhc
Q 007962          556 PLRSIRRTILD  566 (583)
Q Consensus       556 ~~~~~~~~~~~  566 (583)
                      +++...+..+.
T Consensus       691 ~l~g~ip~~l~  701 (768)
T 3rgz_A          691 KLDGRIPQAMS  701 (768)
T ss_dssp             CCEECCCGGGG
T ss_pred             cccCcCChHHh
Confidence            99866555553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.5e-48  Score=412.41  Aligned_cols=507  Identities=24%  Similarity=0.295  Sum_probs=394.2

Q ss_pred             ccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCC
Q 007962           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN  124 (583)
Q Consensus        47 L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~  124 (583)
                      -+.+++++++++.+|..+.  +++++|++++|.++.++. +|.++++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus         6 ~~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             CCeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            3678999999999997665  799999999999998876 799999999999999999865 567899999999999999


Q ss_pred             cCCcCCc-ccccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-
Q 007962          125 QLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-  201 (583)
Q Consensus       125 ~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-  201 (583)
                      .++.++. .+.++++|++|++++|.+..++ ..+..+++|++|++++|.+..+....+..+++|++|++++|.++.++. 
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            9999886 6999999999999999999876 569999999999999999998877778999999999999999987654 


Q ss_pred             hh--cCCccccEEEccCCcCcccC-CCCcCC---------------------------CCCcEEEcCCCCCccC-chhhh
Q 007962          202 TI--GSLSRLIRLDLHQNRILSIP-SSISGC---------------------------CSLAEFYMGNNALSAL-PAELG  250 (583)
Q Consensus       202 ~l--~~~~~L~~L~l~~~~~~~~~-~~~~~~---------------------------~~L~~L~l~~~~~~~l-~~~l~  250 (583)
                      .+  ..+++|+.|++++|.+..++ ..+..+                           ++|+.|++++|.+... +..+.
T Consensus       164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            33  35689999999999888653 333333                           5678888888888744 55677


Q ss_pred             CCC--CCCEEEccCCcccccccccc--cccccEEECcCCCCCCC-ChhhcccCCCcEEecCCCcccc------cc---cc
Q 007962          251 KLS--KLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT------LR---SS  316 (583)
Q Consensus       251 ~~~--~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~------~~---~~  316 (583)
                      .++  +|++|++++|.+..++...+  ..+|+++++++|.+.++ +..+.++++|++++++++....      ++   ..
T Consensus       244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~  323 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF  323 (680)
T ss_dssp             GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred             ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence            665  49999999999987765433  34699999999998884 4568999999999998764321      11   11


Q ss_pred             ccCCCcHHHHHHHHhcCCCCCCccc-ccchhhhhhhhhccccccceeecCCCCCc--cCChhhh---ccCCccEEEcCCC
Q 007962          317 LVNGPTPALLKYLRSRLPENEDSEA-STTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIW---EAGEITKLDLSRN  390 (583)
Q Consensus       317 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~---~~~~L~~L~l~~~  390 (583)
                      .+..            ......... ................+++.+++++|.+.  .++...+   ..++|+.+++++|
T Consensus       324 ~~~~------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n  391 (680)
T 1ziw_A          324 SFQW------------LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN  391 (680)
T ss_dssp             TTTT------------CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS
T ss_pred             hccc------------CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC
Confidence            1110            000000000 00000000111122345667777666532  2222111   1246777778877


Q ss_pred             CCCcC-CccccCCCCCcEEEccCCCCCC-CChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC--CC
Q 007962          391 SIQEL-PPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS--LP  466 (583)
Q Consensus       391 ~l~~l-~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~  466 (583)
                      .+..+ +..+..+++|+.|++++|.+.+ .+...|..+++|++|++++|++..+....|..+++|+.|++++|.+.  +.
T Consensus       392 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  471 (680)
T 1ziw_A          392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS  471 (680)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTC
T ss_pred             CCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccccc
Confidence            77764 4567888999999999998874 55567888999999999999988888888999999999999998876  34


Q ss_pred             CCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch---------hhcCCCCCCEEeCCCCCCCcC
Q 007962          467 ENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE---------GFKNLTSLTELDLSDNNISAL  536 (583)
Q Consensus       467 ~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~---------~l~~~~~L~~L~l~~~~l~~~  536 (583)
                      .+..+..+++|+.|++++|.++.++.. +..+++|++|++++|.++.++.         .+..+++|++|++++|+++.+
T Consensus       472 ~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i  551 (680)
T 1ziw_A          472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI  551 (680)
T ss_dssp             SSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence            566789999999999999999987654 6789999999999999986532         278899999999999999999


Q ss_pred             CCCccccccccceeeccCCCCccchhHHhcc
Q 007962          537 PPELGLLEPSLQALRLDGNPLRSIRRTILDR  567 (583)
Q Consensus       537 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  567 (583)
                      |+..+..+++|+.|++++|.++.++...|..
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            9987777799999999999999999887743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.9e-48  Score=406.06  Aligned_cols=478  Identities=21%  Similarity=0.222  Sum_probs=404.2

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAA   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~   86 (583)
                      +.++++|+++++++.++...+..            +++|++|++++|.++.++ ..|.++++|++|++++|.+..+ |.+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSN------------FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred             CCcCEEECCCCCcCEeChhhccC------------CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence            57899999999999988855443            789999999999999884 5799999999999999999987 779


Q ss_pred             hhCCCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCC--cCCcccccCCCCCEEEccccccCCCC-cccccCCCC
Q 007962           87 IGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM  162 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L  162 (583)
                      |+++++|++|++++|.++.++ ..+.++++|++|++++|.+.  .+|..++++++|++|++++|.+..++ ..+..+++|
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence            999999999999999998776 67999999999999999998  47889999999999999999988653 445555544


Q ss_pred             ----cEEEecCCcceeechhhhcccccCcEEEcCCCcCC--ccchhhcCCccccEEEc----------------------
Q 007962          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDL----------------------  214 (583)
Q Consensus       163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l----------------------  214 (583)
                          .+|++++|.+..+....+... +|+.|++++|.+.  ..+..+..++.|+.+++                      
T Consensus       180 ~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l  258 (606)
T 3vq2_A          180 PQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL  258 (606)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred             ccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence                489999999999988867665 8999999999874  34556666666665554                      


Q ss_pred             -----------cCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECc
Q 007962          215 -----------HQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (583)
Q Consensus       215 -----------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~  283 (583)
                                 ..+.+......+..+++|+.++++++.+..++ .+..+++|++|++++|.+..++.. ...+|++++++
T Consensus       259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~  336 (606)
T 3vq2_A          259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLT  336 (606)
T ss_dssp             GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEE
T ss_pred             hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccC-CCCccceeecc
Confidence                       33344433233788999999999999999888 888999999999999999888855 55679999999


Q ss_pred             CCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceee
Q 007962          284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS  363 (583)
Q Consensus       284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  363 (583)
                      +|...... .+..+++|+++++++|.+......                                 ........+++.++
T Consensus       337 ~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~---------------------------------~~~~~~~~~L~~L~  382 (606)
T 3vq2_A          337 MNKGSISF-KKVALPSLSYLDLSRNALSFSGCC---------------------------------SYSDLGTNSLRHLD  382 (606)
T ss_dssp             SCSSCEEC-CCCCCTTCCEEECCSSCEEEEEEC---------------------------------CHHHHCCSCCCEEE
T ss_pred             CCcCccch-hhccCCCCCEEECcCCccCCCcch---------------------------------hhhhccCCcccEeE
Confidence            99544422 567899999999999987644210                                 01112235789999


Q ss_pred             cCCCCCccCChhhhccCCccEEEcCCCCCCcCC--ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCcc
Q 007962          364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ  441 (583)
Q Consensus       364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~  441 (583)
                      +++|.+..++..+..+++|++|++++|.+...+  ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+
T Consensus       383 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  462 (606)
T 3vq2_A          383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKD  462 (606)
T ss_dssp             CCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCC
Confidence            999999988888888999999999999988754  378899999999999999998888888999999999999999987


Q ss_pred             -CCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccchhhcC
Q 007962          442 -VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGFKN  519 (583)
Q Consensus       442 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~l~~  519 (583)
                       .....|..+++|++|++++|.++...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+..
T Consensus       463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~  542 (606)
T 3vq2_A          463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH  542 (606)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGG
T ss_pred             cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhh
Confidence             3455689999999999999999998888899999999999999999976 77888999999999999999999988888


Q ss_pred             CC-CCCEEeCCCCCCCc
Q 007962          520 LT-SLTELDLSDNNISA  535 (583)
Q Consensus       520 ~~-~L~~L~l~~~~l~~  535 (583)
                      ++ +|++|++++|++..
T Consensus       543 l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          543 FPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             SCTTCCEEECCSCCCCC
T ss_pred             hcccCcEEEccCCCccc
Confidence            87 69999999998873

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8e-47  Score=397.48  Aligned_cols=481  Identities=22%  Similarity=0.264  Sum_probs=404.7

Q ss_pred             ccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCccc-chhhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCC
Q 007962           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN  124 (583)
Q Consensus        47 L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~  124 (583)
                      -+.++.++..++.+|..+..  ++++|++++|.++.+ +.+|.++++|++|++++|.+..+ |..|.++++|++|++++|
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n   91 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN   91 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CceEECCCCCcccCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence            45789999999999987754  799999999999988 55899999999999999999855 677999999999999999


Q ss_pred             cCCcC-CcccccCCCCCEEEccccccCCC-CcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc-ch
Q 007962          125 QLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PE  201 (583)
Q Consensus       125 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~  201 (583)
                      .+..+ |..++.+++|++|++++|.+..+ +..+..+++|++|++++|.+..+....+..+++|++|++++|.+..+ +.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  171 (606)
T 3t6q_A           92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE  171 (606)
T ss_dssp             CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred             cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence            99866 56899999999999999999987 56789999999999999999987655577799999999999999876 56


Q ss_pred             hhcCCcccc--EEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc--------------------------cC-chhhhCC
Q 007962          202 TIGSLSRLI--RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--------------------------AL-PAELGKL  252 (583)
Q Consensus       202 ~l~~~~~L~--~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------------~l-~~~l~~~  252 (583)
                      .++.+++|+  .+++++|.+..++........|+.++++++...                          .+ +..+..+
T Consensus       172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l  251 (606)
T 3t6q_A          172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL  251 (606)
T ss_dssp             HHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGG
T ss_pred             hhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchh
Confidence            788899999  899999999987766666678999999887511                          00 1112222


Q ss_pred             --CCCCEEEccCCccccccccccc--ccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHH
Q 007962          253 --SKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY  328 (583)
Q Consensus       253 --~~L~~L~l~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  328 (583)
                        .+|+++++++|.++.++...+.  .+|+++++++|.+..+|..+.++++|++|++++|.+..+....+          
T Consensus       252 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~----------  321 (606)
T 3t6q_A          252 CEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA----------  321 (606)
T ss_dssp             GGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG----------
T ss_pred             hcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh----------
Confidence              1788889999988877765333  45999999999998888888889999999999988765533222          


Q ss_pred             HHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCc-cCCh-hhhccCCccEEEcCCCCCCcC---CccccCCC
Q 007962          329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPS-EIWEAGEITKLDLSRNSIQEL---PPELSSCA  403 (583)
Q Consensus       329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~-~~~~~~~L~~L~l~~~~l~~l---~~~l~~~~  403 (583)
                                               ....+++.+++++|.+. .++. .+..+++|++|++++|.+..+   +..+..++
T Consensus       322 -------------------------~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  376 (606)
T 3t6q_A          322 -------------------------SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS  376 (606)
T ss_dssp             -------------------------GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT
T ss_pred             -------------------------hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC
Confidence                                     12357899999999876 4544 467789999999999998875   56788999


Q ss_pred             CCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC-CccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEec
Q 007962          404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL  482 (583)
Q Consensus       404 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  482 (583)
                      +|++|++++|.+.+.....+..+++|+.|++++|.+..... ..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus       377 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  456 (606)
T 3t6q_A          377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL  456 (606)
T ss_dssp             TCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEEC
Confidence            99999999999988888888999999999999999987643 44889999999999999999888888999999999999


Q ss_pred             ccccccc--c--ccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCC
Q 007962          483 RRMQLRE--A--PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL  557 (583)
Q Consensus       483 ~~~~l~~--~--~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~  557 (583)
                      ++|.++.  +  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|+++.+++..+..++.| .|++++|++
T Consensus       457 ~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI  535 (606)
T ss_dssp             TTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred             CCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc
Confidence            9999874  2  24578899999999999999976 5779999999999999999998777666666899 999999999


Q ss_pred             ccchhHHh
Q 007962          558 RSIRRTIL  565 (583)
Q Consensus       558 ~~~~~~~~  565 (583)
                      +.+++..+
T Consensus       536 ~~~~~~~~  543 (606)
T 3t6q_A          536 SIILPSLL  543 (606)
T ss_dssp             CCCCGGGH
T ss_pred             cccCHhhc
Confidence            99887765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-47  Score=396.15  Aligned_cols=493  Identities=22%  Similarity=0.262  Sum_probs=376.0

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~   88 (583)
                      ..+++|++.+++++|..++               ++++.|++++|.++.++ ..|.++++|++|++++|.+..++ .+|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred             CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence            4579999999999999764               47999999999999886 47999999999999999999885 4799


Q ss_pred             CCCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCC--CCcccccCCCCcE
Q 007962           89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK  164 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~l~~l~~L~~  164 (583)
                      ++++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .++.+++|++|++++|.+..  +|..+.++++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            9999999999999998765 679999999999999999998875 68999999999999999885  6889999999999


Q ss_pred             EEecCCcceeechhhhcccccC----cEEEcCCCcCCccchhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEcC
Q 007962          165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMG  238 (583)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~  238 (583)
                      |++++|.+..+....++.+++|    +.+++++|.+..++.......+|+.++++++...  .++..+..++.++...+.
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            9999999999988888899888    8999999999876554434458999999987432  233334444444443332


Q ss_pred             CCCC------ccCc-hhhhCCC--CCCEEEccCC-cccccccc--cccccccEEECcCCCCCCCChhhcccCCCcEEecC
Q 007962          239 NNAL------SALP-AELGKLS--KLGTLDLHSN-QLKEYCVE--ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT  306 (583)
Q Consensus       239 ~~~~------~~l~-~~l~~~~--~L~~L~l~~~-~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  306 (583)
                      ...+      ..++ ..+..++  .++.+++..+ .+......  ....+++.+++++|.+..++..+..+ +|++++++
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~  312 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV  312 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEE
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeec
Confidence            1111      1111 0111111  1233333333 22111111  11223555555555555555555555 56666665


Q ss_pred             CCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEE
Q 007962          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD  386 (583)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~  386 (583)
                      +|.+..++..                                      ...+++.+++.++........ ..+++|++|+
T Consensus       313 ~n~~~~l~~~--------------------------------------~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~  353 (570)
T 2z63_A          313 NCKFGQFPTL--------------------------------------KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLD  353 (570)
T ss_dssp             SCBCSSCCBC--------------------------------------BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEE
T ss_pred             cCcccccCcc--------------------------------------cccccCEEeCcCCcccccccc-ccCCCCCEEe
Confidence            5554333211                                      112455555555554432222 5578999999


Q ss_pred             cCCCCCCcC---CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC-CccCCCCcccEEeCCCCc
Q 007962          387 LSRNSIQEL---PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNI  462 (583)
Q Consensus       387 l~~~~l~~l---~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  462 (583)
                      +++|.++..   +..+..+++|++|++++|.+...... +..+++|+.|++++|.+..... ..+..+++|++|++++|.
T Consensus       354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  432 (570)
T 2z63_A          354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH  432 (570)
T ss_dssp             CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred             CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence            999988775   56678899999999999988877665 7899999999999999887654 568899999999999999


Q ss_pred             cCCCCCCCCCCCCccceEeccccccc--ccccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCC
Q 007962          463 ASLPENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPE  539 (583)
Q Consensus       463 ~~~~~~~~~~~l~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~  539 (583)
                      +....+..+..+++|++|++++|.++  .+|..+..+++|++|++++|.++++ |..+..+++|++|++++|+++.+++.
T Consensus       433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            98888888999999999999999887  5888889999999999999999976 77899999999999999999998887


Q ss_pred             ccccccccceeeccCCCCcc
Q 007962          540 LGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       540 ~~~~~~~L~~L~l~~~~~~~  559 (583)
                      .+..+++|+.|++++|+++.
T Consensus       513 ~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          513 IFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTTTCTTCCEEECCSSCBCC
T ss_pred             HhhcccCCcEEEecCCcccC
Confidence            76667999999999999864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3e-45  Score=380.97  Aligned_cols=483  Identities=19%  Similarity=0.242  Sum_probs=391.1

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~   86 (583)
                      +...++|+++++++++|..++               ++|++|++++|.++.++ ..|.++++|++|++++|.+..++ .+
T Consensus         5 ~~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~   69 (549)
T 2z81_A            5 DASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA   69 (549)
T ss_dssp             CTTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence            455679999999999999774               47999999999999874 67999999999999999999875 58


Q ss_pred             hhCCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccc-cCCCC-cccccCCC
Q 007962           87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCSK  161 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~l~-~~l~~l~~  161 (583)
                      |..+++|++|++++|.++.++.. +.++++|++|++++|.++.  .+..+.++++|++|++++|. +..++ ..+..+++
T Consensus        70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~  149 (549)
T 2z81_A           70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS  149 (549)
T ss_dssp             TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence            99999999999999999977765 9999999999999999985  46789999999999999998 56665 57899999


Q ss_pred             CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh-cCCccccEEEccCCcCcccC----CCCcCCCCCcEEE
Q 007962          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFY  236 (583)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~  236 (583)
                      |++|++++|.+....+..+..+++|++|+++++....++.++ ..+++|+.|++++|.+..++    .....+++|+.++
T Consensus       150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~  229 (549)
T 2z81_A          150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA  229 (549)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred             cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence            999999999999887777999999999999999988777654 56899999999999888652    2235578899999


Q ss_pred             cCCCCCcc-----CchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccc
Q 007962          237 MGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR  311 (583)
Q Consensus       237 l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  311 (583)
                      ++++.+..     ++..+..+++|+.+++++|.+..+.....               .....+..+++++.+.+.++.+.
T Consensus       230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~---------------~~~~~~~~l~~L~~L~l~~~~i~  294 (549)
T 2z81_A          230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP---------------SESDVVSELGKVETVTIRRLHIP  294 (549)
T ss_dssp             EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC---------------CTTTCCCCCTTCCEEEEESCBCS
T ss_pred             ccccccchhHHHHHHHHhhhhccccccccccccccccccccc---------------cchhhhhhhcccccccccccccc
Confidence            99887762     33445667888888888887654322110               01122445667777777776543


Q ss_pred             cccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhh-ccCCccEEEcCCC
Q 007962          312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRN  390 (583)
Q Consensus       312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~  390 (583)
                      .....   ...                           ........+++.++++++.+..++..++ .+++|++|++++|
T Consensus       295 ~~~~~---~~l---------------------------~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N  344 (549)
T 2z81_A          295 QFYLF---YDL---------------------------STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN  344 (549)
T ss_dssp             CGGGS---CCC---------------------------CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS
T ss_pred             hhhhc---ccc---------------------------hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCC
Confidence            21100   000                           0011123468889999999988988875 6899999999999


Q ss_pred             CCCc-CC---ccccCCCCCcEEEccCCCCCCCCh--hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC
Q 007962          391 SIQE-LP---PELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (583)
Q Consensus       391 ~l~~-l~---~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  464 (583)
                      .+.+ ++   ..+..+++|++|++++|.++.+..  ..+..+++|++|++++|+++.++.. +..+++|++|++++|.+.
T Consensus       345 ~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCS
T ss_pred             ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcc
Confidence            9886 32   346789999999999999988753  5688999999999999999988764 788999999999999987


Q ss_pred             CCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccc
Q 007962          465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE  544 (583)
Q Consensus       465 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  544 (583)
                      .....   ..++|++|++++|+++.++   ..+++|++|++++|.++.+|. ...+++|++|++++|+++.+++..+..+
T Consensus       424 ~l~~~---~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  496 (549)
T 2z81_A          424 VVKTC---IPQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL  496 (549)
T ss_dssp             CCCTT---SCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred             cccch---hcCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence            65432   2368999999999999865   478999999999999999987 4678999999999999999988866666


Q ss_pred             cccceeeccCCCCcc
Q 007962          545 PSLQALRLDGNPLRS  559 (583)
Q Consensus       545 ~~L~~L~l~~~~~~~  559 (583)
                      ++|+.|++++|+++.
T Consensus       497 ~~L~~L~l~~N~~~~  511 (549)
T 2z81_A          497 TSLQKIWLHTNPWDC  511 (549)
T ss_dssp             TTCCEEECCSSCBCC
T ss_pred             cccCEEEecCCCccC
Confidence            999999999999853

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=399.31  Aligned_cols=486  Identities=23%  Similarity=0.262  Sum_probs=395.8

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCC-Cccc-chhhh
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG   88 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~-l~~l-~~~~~   88 (583)
                      ..+||+++++++||. +               .+++++|+|++|.|+.+ +..|.++++|++|+|++|. +..+ |.+|.
T Consensus         7 ~~~dcs~~~L~~vP~-l---------------p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~   70 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ-V---------------LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR   70 (844)
T ss_dssp             EEEEESCCCSSCCCS-S---------------CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred             eEEEccCCCCCCCCC-C---------------CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence            579999999999998 5               35799999999999987 4689999999999999994 4466 66899


Q ss_pred             CCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCc-CCcc--cccCCCCCEEEccccccCCCC--cccccCCCC
Q 007962           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSLP--EDLADCSKM  162 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~~~~~~l~--~~l~~l~~L  162 (583)
                      ++++|++|+|++|.+..+ |..|.++++|++|++++|.+.. ++..  +..+++|++|++++|.+..++  ..+.++++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            999999999999999865 7889999999999999999985 4443  899999999999999998653  579999999


Q ss_pred             cEEEecCCcceeechhhhccc--ccCcEEEcCCCcCCc-cchhhcCCcc------ccEEEccCCcCc-ccCCC-------
Q 007962          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRIL-SIPSS-------  225 (583)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~-~~~~l~~~~~------L~~L~l~~~~~~-~~~~~-------  225 (583)
                      ++|++++|.+..+....+..+  ++|+.|++++|.+.. .+..++.+++      |+.|++++|.+. ..+..       
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            999999999988777778777  889999999998854 4444444444      999999998654 11111       


Q ss_pred             -----------------------------CcC--CCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCcccccccccc
Q 007962          226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (583)
Q Consensus       226 -----------------------------~~~--~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~  273 (583)
                                                   +..  .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+....+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                         111  26789999999988854 5578888999999999998887655433


Q ss_pred             --cccccEEECcCCCCCCC-ChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhh
Q 007962          274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (583)
Q Consensus       274 --~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  350 (583)
                        ..+|++|++++|.+..+ +..+..+++|++|++++|.+..++...+..                              
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------  360 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKF------------------------------  360 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCS------------------------------
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcC------------------------------
Confidence              34599999999988875 556888999999999999887665444332                              


Q ss_pred             hhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCC
Q 007962          351 MATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSL  429 (583)
Q Consensus       351 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L  429 (583)
                           ..+++.+++++|.+..++.    +++|+.+++++|.+..+|..   ..+++.|++++|.+.+... ..+..+++|
T Consensus       361 -----l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          361 -----LEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             -----CCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             -----CCCCCEEECCCCCCCcccC----CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCcc
Confidence                 2478999999998887654    77899999999999887753   5679999999999988654 345689999


Q ss_pred             cEEecCCCCCccCCCC-ccCCCCcccEEeCCCCccCC-----CCCCCCCCCCccceEecccccccccccc-hhccCcccE
Q 007962          430 SCLKLDNNPLRQVPSD-GFKDIPMLQILDLSYNIASL-----PENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRI  502 (583)
Q Consensus       430 ~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~  502 (583)
                      +.|++++|+++.++.. .+..+++|+.|++++|.+..     ..+..+..+++|+.|+|++|.++.++.. +..+++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            9999999999876543 45678999999999998863     3345688899999999999999977655 578999999


Q ss_pred             EeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          503 LDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       503 L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      |++++|.++.+|..... ++|+.|++++|+|+.+++..+   .+|+.+++++|++..
T Consensus       509 L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          509 LSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             EEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred             eECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence            99999999988755333 899999999999998877654   479999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-44  Score=373.45  Aligned_cols=475  Identities=23%  Similarity=0.287  Sum_probs=373.8

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AA   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~   86 (583)
                      +.++++|+++++++.++...+            ..+++|++|++++|.++.++ ..|+++++|++|++++|.++.++ .+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~------------~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSF------------FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTT------------TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccEEEccCCccCccChhHh------------hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            468899999999999887544            34789999999999999886 57999999999999999999876 58


Q ss_pred             hhCCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccccCCCC-cccccCCCC
Q 007962           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKM  162 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L  162 (583)
                      |..+++|++|++++|.++.++. .+.++++|++|++++|.+..  +|..++++++|++|++++|.+..++ ..+..+++|
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            9999999999999999998775 68999999999999999985  6889999999999999999998654 567778888


Q ss_pred             ----cEEEecCCcceeechhhhcccccCcEEEcCCCcC--CccchhhcCCccccEEEccCCcC------cccC-CCCcCC
Q 007962          163 ----SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL--NGMPETIGSLSRLIRLDLHQNRI------LSIP-SSISGC  229 (583)
Q Consensus       163 ----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~~~~L~~L~l~~~~~------~~~~-~~~~~~  229 (583)
                          +.|++++|.+..+....+... +|+.++++++..  ..++..+..++.++...+....+      ..++ ..+..+
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l  254 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  254 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred             chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence                899999999999988877766 899999998844  23455566666665554432211      1111 122222


Q ss_pred             CC--CcEEEcCCC-CCc-cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEec
Q 007962          230 CS--LAEFYMGNN-ALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL  305 (583)
Q Consensus       230 ~~--L~~L~l~~~-~~~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  305 (583)
                      ++  ++.+++.++ .+. ..+..+..+++|++++++++.+..++......+++++++++|.+..++.  ..+++|+++++
T Consensus       255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~--~~l~~L~~L~l  332 (570)
T 2z63_A          255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTF  332 (570)
T ss_dssp             GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB--CBCSSCCEEEE
T ss_pred             cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc--ccccccCEEeC
Confidence            22  344555444 222 3455666677777777777776666554444467777777777766654  45677777777


Q ss_pred             CCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccC---ChhhhccCCc
Q 007962          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI---PSEIWEAGEI  382 (583)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~---~~~~~~~~~L  382 (583)
                      +++........                                     ....+++.+++++|.+...   +..+..+++|
T Consensus       333 ~~n~~~~~~~~-------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  375 (570)
T 2z63_A          333 TSNKGGNAFSE-------------------------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL  375 (570)
T ss_dssp             ESCBSCCBCCC-------------------------------------CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred             cCCcccccccc-------------------------------------ccCCCCCEEeCcCCccCccccccccccccCcc
Confidence            77654321110                                     1224677777777776654   4667788999


Q ss_pred             cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh-hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      ++|++++|.+..++..+..+++|++|++++|.+..... ..+..+++|++|++++|.+.......|.++++|++|++++|
T Consensus       376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            99999999998887778999999999999998887654 56789999999999999999988888999999999999999


Q ss_pred             ccC-CCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCCCc
Q 007962          462 IAS-LPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISA  535 (583)
Q Consensus       462 ~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l~~  535 (583)
                      .+. ...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+++++ ..+..+++|++|++++|+++.
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            987 45567889999999999999999976 778889999999999999999775 458999999999999998884

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=8.6e-43  Score=369.86  Aligned_cols=508  Identities=22%  Similarity=0.252  Sum_probs=388.5

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-hhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~~   89 (583)
                      .++||++.++++||+.++               +++++|||++|.|+.++. .|.++++|++|+|++|.++.+++ +|.+
T Consensus        34 ~~~~c~~~~l~~vP~~lp---------------~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~   98 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   98 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred             CEEECCCCCcCccCCCCC---------------cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC
Confidence            468999999999999884               479999999999999974 79999999999999999998865 8999


Q ss_pred             CCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCC--CCcccccCCCCcEE
Q 007962           90 LHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (583)
Q Consensus        90 ~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L  165 (583)
                      +++|++|+|++|.++.+|. .|.++++|++|++++|.++.++. .++++++|++|++++|.+..  ++..+..+++|++|
T Consensus        99 L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A           99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             CTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            9999999999999998875 58999999999999999998875 58999999999999999874  56788999999999


Q ss_pred             EecCCcceeechhhhcccccCc----EEEcCCCcCCccchhhcCCccccEEEccCCcCc--ccCCCCcCCCCCcEEEc--
Q 007962          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM--  237 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l--  237 (583)
                      ++++|.+..+....+..+.+++    .++++.+.+..++........+..+++.++...  ..+..+..+..++...+  
T Consensus       179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            9999999998887777766544    678888888776655555556667777665432  11122333333333322  


Q ss_pred             ----------------------------CCCCCc----cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCC
Q 007962          238 ----------------------------GNNALS----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (583)
Q Consensus       238 ----------------------------~~~~~~----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~  285 (583)
                                                  ..+...    .....+....+++.+.+.++.+..+........++.+++.++
T Consensus       259 ~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  338 (635)
T 4g8a_A          259 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC  338 (635)
T ss_dssp             ECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESC
T ss_pred             cccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccc
Confidence                                        211111    122233444566666666665555544444445666666666


Q ss_pred             CCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecC
Q 007962          286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (583)
Q Consensus       286 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~  365 (583)
                      .+..++.  ..+..++.+.+..+........                                     ....+++.++++
T Consensus       339 ~~~~~~~--~~l~~L~~l~l~~n~~~~~~~~-------------------------------------~~l~~L~~L~ls  379 (635)
T 4g8a_A          339 KFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-------------------------------------VDLPSLEFLDLS  379 (635)
T ss_dssp             EESSCCC--CBCTTCCEEEEESCCSCCBCCC-------------------------------------CBCTTCCEEECC
T ss_pred             cccCcCc--ccchhhhhcccccccCCCCccc-------------------------------------ccccccccchhh
Confidence            5555432  2345566666655543221110                                     112467888888


Q ss_pred             CCCCc---cCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCC-CChhhhhcCCCCcEEecCCCCCcc
Q 007962          366 GMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQ  441 (583)
Q Consensus       366 ~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~  441 (583)
                      .+.+.   ..+.......+|+.+++..+....++..+..+++|+.+++.++.... .....|..+++++.++++.|.+..
T Consensus       380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~  459 (635)
T 4g8a_A          380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  459 (635)
T ss_dssp             SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred             ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence            88765   34556667789999999999887777778899999999999886554 344567889999999999999999


Q ss_pred             CCCCccCCCCcccEEeCCCCcc-CCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccc-hhhc
Q 007962          442 VPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFK  518 (583)
Q Consensus       442 ~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~l~  518 (583)
                      +....+..+++|+.|++++|.+ ....+..+..+++|++|+|++|+++.+ |..+.++++|++|++++|.+++++ ..+.
T Consensus       460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  539 (635)
T 4g8a_A          460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK  539 (635)
T ss_dssp             CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred             ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence            8888899999999999999975 445667799999999999999999976 556789999999999999999875 5589


Q ss_pred             CCCCCCEEeCCCCCCCcCCCCcccc-ccccceeeccCCCCccchhHHhccchHHHHHHHhhc
Q 007962          519 NLTSLTELDLSDNNISALPPELGLL-EPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDK  579 (583)
Q Consensus       519 ~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  579 (583)
                      .+++|++|++++|+|+.+++..+.. +++|+.|++++|+++      ++........|++++
T Consensus       540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~------C~C~~~~~~~wl~~~  595 (635)
T 4g8a_A          540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------CTCEHQSFLQWIKDQ  595 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC------CSGGGHHHHHHHHHT
T ss_pred             CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc------ccCCcHHHHHHHHhC
Confidence            9999999999999999888766544 368999999999996      444455566676654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.4e-43  Score=361.12  Aligned_cols=446  Identities=21%  Similarity=0.211  Sum_probs=305.8

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~   89 (583)
                      +++||++++++.+|..++               ++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |.+|.+
T Consensus         3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   67 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF   67 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred             ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence            578999999999998663               47999999999999875 5799999999999999999877 568999


Q ss_pred             CCCccEEEccCCccccCCccccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccccCCCCcccccCCCC--cEE
Q 007962           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL  165 (583)
Q Consensus        90 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L--~~L  165 (583)
                      +++|++|++++|.++.+|..  .+++|++|++++|.++.  +|..++.+++|++|++++|.+..  ..+..+++|  ++|
T Consensus        68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV  143 (520)
T ss_dssp             CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred             ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence            99999999999998888766  78889999999888875  45788888888888888887765  355666666  777


Q ss_pred             EecCCcc--eeechhhhcccc-cCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCC-
Q 007962          166 DVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA-  241 (583)
Q Consensus       166 ~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-  241 (583)
                      ++++|.+  ....+..+..+. +...+++++|.+...                     ..+..+..+++|+.+++++|. 
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~---------------------~~~~~~~~l~~L~~L~l~~n~~  202 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF---------------------ILDVSVKTVANLELSNIKCVLE  202 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCC---------------------CCCCCCTTCSEEEECCEEECCS
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhh---------------------hhhhhhhcccceeecccccccc
Confidence            7777766  333333233332 122334444433210                     011223344444444444443 


Q ss_pred             ------CccCchhhhCCCCCCEEEccCCcccccc-----cccccccccEEECcCCCCC-CCChhh-----cccCCCcEEe
Q 007962          242 ------LSALPAELGKLSKLGTLDLHSNQLKEYC-----VEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLL  304 (583)
Q Consensus       242 ------~~~l~~~l~~~~~L~~L~l~~~~l~~~~-----~~~~~~~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~  304 (583)
                            +......++.+++|+.|+++++.+....     ......+++++++++|.+. .+|..+     +.+++|+.++
T Consensus       203 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~  282 (520)
T 2z7x_B          203 DNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ  282 (520)
T ss_dssp             TTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEE
T ss_pred             ccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEecc
Confidence                  2222224555666666666665544211     1111224555666555555 344444     5666777777


Q ss_pred             cCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhc---cCC
Q 007962          305 LTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE---AGE  381 (583)
Q Consensus       305 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~---~~~  381 (583)
                      ++++.+ .++.                                                          ..++.   ..+
T Consensus       283 l~~n~~-~~p~----------------------------------------------------------~~~~~~~~~~~  303 (520)
T 2z7x_B          283 VVSDVF-GFPQ----------------------------------------------------------SYIYEIFSNMN  303 (520)
T ss_dssp             EEECCC-CSCT----------------------------------------------------------HHHHHHHHTCC
T ss_pred             ccccce-ecch----------------------------------------------------------hhhhcccccCc
Confidence            666544 2110                                                          11221   245


Q ss_pred             ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC--CccCCCCcccEEeCC
Q 007962          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLS  459 (583)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~  459 (583)
                      |+.|++++|.+...+ ....+++|++|++++|.+.+..+..+..+++|++|++++|.+++++.  ..+.++++|++|+++
T Consensus       304 L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          304 IKNFTVSGTRMVHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             eeEEEcCCCcccccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            777777777765543 12567788888888888877666666778888888888888776432  347778888888888


Q ss_pred             CCccCC-CCCCCCCCCCccceEeccccccc-ccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCC
Q 007962          460 YNIASL-PENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP  537 (583)
Q Consensus       460 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~  537 (583)
                      +|.+.. .....+..+++|++|++++|.++ .++..+.  ++|++|++++|.++.+|..+..+++|++|++++|+|+.+|
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~  460 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP  460 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC
Confidence            888876 44445777888888888888876 3333322  6899999999999988888778899999999999999888


Q ss_pred             CCccccccccceeeccCCCCcc
Q 007962          538 PELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       538 ~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      +..+..+++|+.|++++|+++.
T Consensus       461 ~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          461 DGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCC
T ss_pred             HHHhccCCcccEEECcCCCCcc
Confidence            8755555889999999999864

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-42  Score=358.37  Aligned_cols=424  Identities=23%  Similarity=0.275  Sum_probs=327.9

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI   87 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~~~   87 (583)
                      +.++++|+++++++.++...+..            +++|++|++++|.++.+ |..|.++++|++|++++|.++.+|.. 
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILS------------LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH-   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTT------------CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC-
T ss_pred             ccccEEECCCCcccccChhhccc------------cccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc-
Confidence            57899999999999999766544            78999999999999988 67899999999999999999998877 


Q ss_pred             hCCCCccEEEccCCcccc--CCccccccCcccEEEcCCCcCCcCCcccccCCCC--CEEEcccccc--C-CCCcccccCC
Q 007962           88 GELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS  160 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~l~~~l~~l~  160 (583)
                       .+++|++|++++|.++.  +|..+.++++|++|++++|.+..  ..+..+++|  ++|++++|.+  . ..+..+..+.
T Consensus        88 -~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~  164 (520)
T 2z7x_B           88 -PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN  164 (520)
T ss_dssp             -CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred             -ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence             89999999999999985  57899999999999999999876  467788888  9999999988  3 4455555554


Q ss_pred             -CCcEEEecCCcce-eechhhhcccccCcEEEcCCCc-------CCccchhhcCCccccEEEccCCcCcc-----cCCCC
Q 007962          161 -KMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNL-------LNGMPETIGSLSRLIRLDLHQNRILS-----IPSSI  226 (583)
Q Consensus       161 -~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~  226 (583)
                       +...++++++.+. .+....+..+++|+.+++++|.       +......++.+++|+.|+++++.+..     ++...
T Consensus       165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~  244 (520)
T 2z7x_B          165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV  244 (520)
T ss_dssp             EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHh
Confidence             2335566666654 3444456778888888888875       32222356667777777777766541     11111


Q ss_pred             cCCCCCcEEEcCCCCCc-cCchhh-----hCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC-hhhccc--
Q 007962          227 SGCCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP-PEIGKM--  297 (583)
Q Consensus       227 ~~~~~L~~L~l~~~~~~-~l~~~l-----~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~--  297 (583)
                       ..++|++|++++|.+. .+|..+     +.+++|+.++++++.                      + .+| ..+..+  
T Consensus       245 -~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~----------------------~-~~p~~~~~~~~~  300 (520)
T 2z7x_B          245 -WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV----------------------F-GFPQSYIYEIFS  300 (520)
T ss_dssp             -HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC----------------------C-CSCTHHHHHHHH
T ss_pred             -hhCcccEEEeecccccCccccchhhcccccCceeEeccccccc----------------------e-ecchhhhhcccc
Confidence             1346666666666665 555555     555555555555544                      3 333 223333  


Q ss_pred             -CCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhh
Q 007962          298 -TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI  376 (583)
Q Consensus       298 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  376 (583)
                       .+++.++++++.+....                                                            ..
T Consensus       301 ~~~L~~L~l~~n~l~~~~------------------------------------------------------------~~  320 (520)
T 2z7x_B          301 NMNIKNFTVSGTRMVHML------------------------------------------------------------CP  320 (520)
T ss_dssp             TCCCSEEEEESSCCCCCC------------------------------------------------------------CC
T ss_pred             cCceeEEEcCCCcccccc------------------------------------------------------------ch
Confidence             56778887777542211                                                            00


Q ss_pred             hccCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCCh--hhhhcCCCCcEEecCCCCCcc-CCCCccCCCCc
Q 007962          377 WEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPM  452 (583)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~  452 (583)
                      ..+++|++|++++|.+++ +|..+..+++|++|++++|.+.++..  ..+..+++|+.|++++|.+.+ ++...+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            236788999999998887 67788899999999999999987433  567899999999999999998 77777889999


Q ss_pred             ccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCC
Q 007962          453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDN  531 (583)
Q Consensus       453 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~  531 (583)
                      |++|++++|.+++..+..+.  ++|+.|++++|+++.+|..++.+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            99999999998765443333  799999999999999999999999999999999999999876 889999999999999


Q ss_pred             CCC
Q 007962          532 NIS  534 (583)
Q Consensus       532 ~l~  534 (583)
                      +++
T Consensus       479 ~~~  481 (520)
T 2z7x_B          479 PWD  481 (520)
T ss_dssp             CBC
T ss_pred             CCc
Confidence            887

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-42  Score=375.31  Aligned_cols=468  Identities=25%  Similarity=0.279  Sum_probs=382.5

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCC-cchhh-hHhhCCCCCCcEEEcCCCCCccc-ch
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-NIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PA   85 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~-~i~~l-~~~~~~~~~L~~L~L~~~~l~~l-~~   85 (583)
                      ++++++|+++++++.++...+            ..+++|++|++++| .+..+ |..|+++++|++|+|++|.+..+ |.
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~------------~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSF------------PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSC------------SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCcCEEECCCCcCCccChhHC------------cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            578999999999998866443            34789999999999 45566 56899999999999999999976 77


Q ss_pred             hhhCCCCccEEEccCCcccc-CCcc--ccccCcccEEEcCCCcCCcCC--cccccCCCCCEEEccccccCCC-CcccccC
Q 007962           86 AIGELHMLKSLDVSFNSIMK-IPDE--IGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSL-PEDLADC  159 (583)
Q Consensus        86 ~~~~~~~L~~L~L~~~~l~~-l~~~--~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l  159 (583)
                      .|.++++|++|++++|.++. ++..  +.++++|++|++++|.+..++  ..++++++|++|++++|.+..+ +..+..+
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence            99999999999999999874 5554  889999999999999998663  5789999999999999998753 4566666


Q ss_pred             --CCCcEEEecCCcceeechhhhccccc------CcEEEcCCCcCCc-cchh----------------------------
Q 007962          160 --SKMSKLDVEGNKLTVLSNNLIASWTM------LTELIASKNLLNG-MPET----------------------------  202 (583)
Q Consensus       160 --~~L~~L~l~~~~i~~~~~~~~~~~~~------L~~L~l~~~~~~~-~~~~----------------------------  202 (583)
                        ++|+.|++++|.+.......+..+++      |+.|++++|.+.. .+..                            
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              89999999999887655444555544      8999999886531 1111                            


Q ss_pred             --------hcC--CccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccc
Q 007962          203 --------IGS--LSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCV  270 (583)
Q Consensus       203 --------l~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~  270 (583)
                              +..  .++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+..+..
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence                    111  26899999999998855 56789999999999999999965 5678999999999999999987644


Q ss_pred             ccc--cccccEEECcCCCCCCCCh-hhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhh
Q 007962          271 EAC--QLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED  347 (583)
Q Consensus       271 ~~~--~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  347 (583)
                      ..+  ..+|+.|++++|.+..++. .+..+++|++|++++|.+..++.                                
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--------------------------------  379 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--------------------------------  379 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--------------------------------
T ss_pred             HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--------------------------------
Confidence            332  3459999999999988765 48889999999999998764431                                


Q ss_pred             hhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc--cccCCCCCcEEEccCCCCCCCChh-hhh
Q 007962          348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDA-ILT  424 (583)
Q Consensus       348 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~-~l~  424 (583)
                              ..+++.+.+++|.+..++..   ...++.+++++|.+..++.  .+..+++|++|++++|.+...... .+.
T Consensus       380 --------~~~L~~L~l~~N~l~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  448 (844)
T 3j0a_A          380 --------IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS  448 (844)
T ss_dssp             --------CCSCSEEEEESCCCCCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC
T ss_pred             --------CCCcchhccCCCCccccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccc
Confidence                    24688999999999887654   5679999999999988654  356899999999999999875432 346


Q ss_pred             cCCCCcEEecCCCCCccC-----CCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCc
Q 007962          425 SLSSLSCLKLDNNPLRQV-----PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ  499 (583)
Q Consensus       425 ~l~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~  499 (583)
                      .+++|+.|++++|.+...     ....|.++++|+.|++++|.++...+..+..+++|+.|+|++|.++.++..... ++
T Consensus       449 ~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~  527 (844)
T 3j0a_A          449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-AN  527 (844)
T ss_dssp             SCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SC
T ss_pred             cCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-cc
Confidence            789999999999998743     334588899999999999999999998999999999999999999988776555 89


Q ss_pred             ccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCC
Q 007962          500 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS  534 (583)
Q Consensus       500 L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~  534 (583)
                      |+.|++++|.++.++..  .+.+|+.|++++|++.
T Consensus       528 L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~  560 (844)
T 3j0a_A          528 LEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI  560 (844)
T ss_dssp             CCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred             ccEEECCCCcCCCCChh--HhCCcCEEEecCCCcc
Confidence            99999999999976432  3468999999988654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-41  Score=353.84  Aligned_cols=450  Identities=20%  Similarity=0.235  Sum_probs=361.6

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccch-h
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~-~   86 (583)
                      +.++++|+++++++.++...+            ..+++|++|++++|.++.++ ..|.++++|++|++++|.+..++. .
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~------------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDL------------RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW   93 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTT------------SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred             CCccEEECcCCccCccChhhh------------hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence            478999999999998876443            34789999999999999886 579999999999999999998876 5


Q ss_pred             hhCCCCccEEEccCCcccc--CCccccccCcccEEEcCCCc-CCcCC-cccccCCCCCEEEccccccCC-CCcccccCCC
Q 007962           87 IGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQ-LKELP-SSLGRCLNLSDFKASNNCITS-LPEDLADCSK  161 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l~~~~-~~~~~-~~~~~~~~L~~L~l~~~~~~~-l~~~l~~l~~  161 (583)
                      |+.+++|++|++++|.++.  .|..+.++++|++|++++|. +..++ ..+..+++|++|++++|.+.. ++..+..+++
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  173 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD  173 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence            9999999999999999984  46789999999999999998 66676 578999999999999999984 6778999999


Q ss_pred             CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc---h-hhcCCccccEEEccCCcCc-----ccCCCCcCCCCC
Q 007962          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP---E-TIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSL  232 (583)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~-~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L  232 (583)
                      |++|+++++.+..++...+..+++|+.|++++|.+..++   . ....+++|+.|+++++.+.     .++..+..+++|
T Consensus       174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            999999999988887776778999999999999987642   1 2345789999999999876     334556778999


Q ss_pred             cEEEcCCCCCccCc-------hhhhCCCCCCEEEccCCcccccccc-------cccccccEEECcCCCCCCCChhh-ccc
Q 007962          233 AEFYMGNNALSALP-------AELGKLSKLGTLDLHSNQLKEYCVE-------ACQLRLSVLDLSNNSLSGLPPEI-GKM  297 (583)
Q Consensus       233 ~~L~l~~~~~~~l~-------~~l~~~~~L~~L~l~~~~l~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~-~~~  297 (583)
                      +.+++++|.+..++       ..+..+++++.+.+.++.+......       ....+++.+++++|.+..+|..+ ..+
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l  333 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL  333 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence            99999999876442       2356778999999998876643211       12345899999999988888776 578


Q ss_pred             CCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhh
Q 007962          298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW  377 (583)
Q Consensus       298 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~  377 (583)
                      ++|++|++++|.+.......                                                       +..+.
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~-------------------------------------------------------~~~~~  358 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKN-------------------------------------------------------SACKG  358 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHH-------------------------------------------------------HTCTT
T ss_pred             ccccEEEccCCccccccccc-------------------------------------------------------hhhhh
Confidence            99999999988764311000                                                       01123


Q ss_pred             ccCCccEEEcCCCCCCcCC---ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCccc
Q 007962          378 EAGEITKLDLSRNSIQELP---PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ  454 (583)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~---~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~  454 (583)
                      .+++|++|++++|.++.++   ..+..+++|++|++++|+++.++. .+..+++|++|++++|.++.++...   .++|+
T Consensus       359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~  434 (549)
T 2z81_A          359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCI---PQTLE  434 (549)
T ss_dssp             SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTS---CTTCS
T ss_pred             ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCCh-hhcccccccEEECCCCCcccccchh---cCCce
Confidence            4567888888888887754   347778888888888888886654 3567888888888888888766442   36899


Q ss_pred             EEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCC
Q 007962          455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNI  533 (583)
Q Consensus       455 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l  533 (583)
                      +|++++|.+++.    ...+++|++|++++|+++.+|. ...+++|++|++++|.++.++ ..+..+++|++|++++|++
T Consensus       435 ~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          435 VLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             EEECCSSCCSCC----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             EEECCCCChhhh----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            999999988764    2578899999999999998876 467899999999999999765 4588999999999999987


Q ss_pred             C
Q 007962          534 S  534 (583)
Q Consensus       534 ~  534 (583)
                      .
T Consensus       510 ~  510 (549)
T 2z81_A          510 D  510 (549)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-42  Score=360.15  Aligned_cols=431  Identities=20%  Similarity=0.299  Sum_probs=253.5

Q ss_pred             cCccEEEcCCCcch-hhhHhhCCCCCCcEEEcCCCCCc-------------ccchhhhCCCCccEEEccCCccc-cCCcc
Q 007962           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-------------ELPAAIGELHMLKSLDVSFNSIM-KIPDE  109 (583)
Q Consensus        45 ~~L~~L~ls~~~i~-~l~~~~~~~~~L~~L~L~~~~l~-------------~l~~~~~~~~~L~~L~L~~~~l~-~l~~~  109 (583)
                      ..++.|+|+++.++ .+|..++++++|++|+|++|.+.             .+|...  +..|+ ++++++.+. ..+..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            36788888888887 66778888888888888887542             122211  22333 333333222 11211


Q ss_pred             ccc-cC------------------cccEEEcC--CCcCCcCCcccccCCCCCEEEccccccCC-----------------
Q 007962          110 IGS-AT------------------ALVKFDCS--SNQLKELPSSLGRCLNLSDFKASNNCITS-----------------  151 (583)
Q Consensus       110 ~~~-l~------------------~L~~L~l~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------------  151 (583)
                      +.. +.                  .++.+.+.  +|.++.+|..++++++|++|++++|.+..                 
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~  237 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ  237 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence            110 11                  11111111  23333445555555555555555555554                 


Q ss_pred             -CCcccc--cCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCc-CCc--cchhhcCC------ccccEEEccCCcC
Q 007962          152 -LPEDLA--DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL-LNG--MPETIGSL------SRLIRLDLHQNRI  219 (583)
Q Consensus       152 -l~~~l~--~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~l~~~------~~L~~L~l~~~~~  219 (583)
                       +|..+.  ++++|++|++++|.+....+..+.++++|++|++++|. ++.  +|..++.+      ++|+.|++++|.+
T Consensus       238 ~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             HTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             cCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence             555544  55555555555554443333334444555555555554 432  44433332      4444444444444


Q ss_pred             cccCC--CCcCCCCCcEEEcCCCCCc-cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcc
Q 007962          220 LSIPS--SISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK  296 (583)
Q Consensus       220 ~~~~~--~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  296 (583)
                      ..+|.  .+..+++|+.|++++|.+. .+| .++.+++|++|+                      +++|.+..+|..+..
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~----------------------L~~N~l~~lp~~l~~  374 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN----------------------LAYNQITEIPANFCG  374 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE----------------------CCSSEEEECCTTSEE
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE----------------------CCCCccccccHhhhh
Confidence            44443  3444444444444444444 333 333334444444                      444444444555666


Q ss_pred             cCC-CcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChh
Q 007962          297 MTT-LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE  375 (583)
Q Consensus       297 ~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~  375 (583)
                      +++ |++|++++|.+..++                                                           ..
T Consensus       375 l~~~L~~L~Ls~N~l~~lp-----------------------------------------------------------~~  395 (636)
T 4eco_A          375 FTEQVENLSFAHNKLKYIP-----------------------------------------------------------NI  395 (636)
T ss_dssp             ECTTCCEEECCSSCCSSCC-----------------------------------------------------------SC
T ss_pred             hcccCcEEEccCCcCcccc-----------------------------------------------------------hh
Confidence            666 666666666553222                                                           11


Q ss_pred             hhc--cCCccEEEcCCCCCCc-CCcccc-------CCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCC
Q 007962          376 IWE--AGEITKLDLSRNSIQE-LPPELS-------SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD  445 (583)
Q Consensus       376 ~~~--~~~L~~L~l~~~~l~~-l~~~l~-------~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  445 (583)
                      +..  +++|++|++++|.+.. +|..+.       .+++|++|++++|.++.++...+..+++|+.|++++|.++.++..
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence            111  2356777777776655 444454       566788888888888877777777788888888888888877766


Q ss_pred             ccCCCC-------cccEEeCCCCccCCCCCCCCC--CCCccceEecccccccccccchhccCcccEEeCCC------CcC
Q 007962          446 GFKDIP-------MLQILDLSYNIASLPENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSL  510 (583)
Q Consensus       446 ~~~~~~-------~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~------n~l  510 (583)
                      .+....       +|++|++++|.++.+ +..+.  .+++|++|++++|.++.+|..+..+++|++|++++      |.+
T Consensus       476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          476 SLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             SSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             HhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence            554433       888888888888744 33444  78888888888888888888888888888888844      554


Q ss_pred             C-ccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHH
Q 007962          511 Q-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTI  564 (583)
Q Consensus       511 ~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  564 (583)
                      . .+|..+..+++|++|++++|+|+.+|..+.   ++|+.|++++|++..++...
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~~  606 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSY  606 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEECTT
T ss_pred             cccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccHHh
Confidence            4 678788888888888888888888887643   68888888888887776433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=9.3e-42  Score=362.86  Aligned_cols=434  Identities=20%  Similarity=0.251  Sum_probs=267.7

Q ss_pred             cCccEEEcCCCcch-hhhHhhCCCCCCcEEEc-CCCCCccc-c-h-----------------------------------
Q 007962           45 VDLQKLILAHNNIE-KLKEDLRNLPLLTVLNV-SHNKLSEL-P-A-----------------------------------   85 (583)
Q Consensus        45 ~~L~~L~ls~~~i~-~l~~~~~~~~~L~~L~L-~~~~l~~l-~-~-----------------------------------   85 (583)
                      ..++.|+|+++.++ .+|..++++++|++|+| ++|.+... + .                                   
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46888999999998 77888999999999999 66654311 0 0                                   


Q ss_pred             ----hh-----------hCCCCccEEEccC--CccccCCccccccCcccEEEcCCCcCCc------------------CC
Q 007962           86 ----AI-----------GELHMLKSLDVSF--NSIMKIPDEIGSATALVKFDCSSNQLKE------------------LP  130 (583)
Q Consensus        86 ----~~-----------~~~~~L~~L~L~~--~~l~~l~~~~~~l~~L~~L~l~~~~~~~------------------~~  130 (583)
                          .+           .....++.+.+..  |.++.+|..+.++++|+.|++++|.++.                  +|
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                00           1112233333332  4555677777778888888888887776                  77


Q ss_pred             cccc--cCCCCCEEEccccccC-CCCcccccCCCCcEEEecCCc-cee--echhhhcccc-------cCcEEEcCCCcCC
Q 007962          131 SSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV--LSNNLIASWT-------MLTELIASKNLLN  197 (583)
Q Consensus       131 ~~~~--~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~-i~~--~~~~~~~~~~-------~L~~L~l~~~~~~  197 (583)
                      ..++  ++++|++|++++|.+. .+|..+.++++|++|++++|. +..  ++. .+..++       +|+.|++++|.+.
T Consensus       483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~-~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA-DWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH-HHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchH-HHHhhhhcccccCCccEEEeeCCcCC
Confidence            7766  7778888888777644 667777777778888887776 654  332 244443       7777777777777


Q ss_pred             ccch--hhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCC-CCEEEccCCccccccccccc
Q 007962          198 GMPE--TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLDLHSNQLKEYCVEACQ  274 (583)
Q Consensus       198 ~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~-L~~L~l~~~~l~~~~~~~~~  274 (583)
                      .+|.  .++.+++|+.|++++|.+..+| .+..+++|+.|++++|.+..+|..+..+++ |++|++++|.++.++     
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp-----  635 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP-----  635 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC-----
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc-----
Confidence            7776  6777777777777777777666 677777777777777777777766777776 777777777665443     


Q ss_pred             ccccEEECcCCCCCCCChhhcccC--CCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhh
Q 007962          275 LRLSVLDLSNNSLSGLPPEIGKMT--TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (583)
Q Consensus       275 ~~L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  352 (583)
                                       ..+....  +|++|++++|.+..........                                
T Consensus       636 -----------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~--------------------------------  666 (876)
T 4ecn_A          636 -----------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCS--------------------------------  666 (876)
T ss_dssp             -----------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSC--------------------------------
T ss_pred             -----------------hhhhccccCCCCEEECcCCcCCCccccchhh--------------------------------
Confidence                             3333332  3666666666553211000000                                


Q ss_pred             hccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccc-cCCCCCcEEEccCCCCCCCChhhhhc------
Q 007962          353 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAILTS------  425 (583)
Q Consensus       353 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l-~~~~~L~~L~l~~~~l~~~~~~~l~~------  425 (583)
                                           ......++|+.|++++|.+..+|..+ ..+++|+.|++++|.+..++...+..      
T Consensus       667 ---------------------l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~  725 (876)
T 4ecn_A          667 ---------------------MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK  725 (876)
T ss_dssp             ---------------------TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred             ---------------------hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence                                 00011234555555555555555433 25555666666666555444433322      


Q ss_pred             -CCCCcEEecCCCCCccCCCCccC--CCCcccEEeCCCCccCCCCCCCCCCCCccceEeccc------cccc-ccccchh
Q 007962          426 -LSSLSCLKLDNNPLRQVPSDGFK--DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR------MQLR-EAPTDIL  495 (583)
Q Consensus       426 -l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~l~-~~~~~~~  495 (583)
                       +++|+.|++++|+++.++.. +.  .+++|+.|++++|.++.+ +..+..+++|+.|+|++      |.+. .+|..+.
T Consensus       726 nl~~L~~L~Ls~N~L~~lp~~-l~~~~l~~L~~L~Ls~N~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~  803 (876)
T 4ecn_A          726 NTYLLTTIDLRFNKLTSLSDD-FRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT  803 (876)
T ss_dssp             TGGGCCEEECCSSCCCCCCGG-GSTTTCTTCCEEECCSSCCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred             ccCCccEEECCCCCCccchHH-hhhccCCCcCEEEeCCCCCCcc-chhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence             22666666666666655543 33  566666666666666552 44455666666666655      4443 6667777


Q ss_pred             ccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          496 RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       496 ~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      .+++|+.|++++|.+..+|..+.  ++|+.|++++|++..+....+.....+..+.+.+++.+.
T Consensus       804 ~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          804 TCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             GCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             cCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence            77888888888887777776644  578888888887776654433222334444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=8.4e-42  Score=358.22  Aligned_cols=438  Identities=18%  Similarity=0.243  Sum_probs=287.0

Q ss_pred             hhhceeeccCCcCC-CCChhhhhcccccCCCCCcccccCccEEEcCCCcch-------------hhhHhhCCCCCCcEEE
Q 007962            9 RTSGSLNLSNRSLR-DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-------------KLKEDLRNLPLLTVLN   74 (583)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-------------~l~~~~~~~~~L~~L~   74 (583)
                      ..++.++++++++. .+|+.+             .++++|++|+|++|.+.             .+|...  +.+|+ ++
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l-------------~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~  144 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAI-------------GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MH  144 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGG-------------GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-TH
T ss_pred             CCEEEEEecCcccCCcCChHH-------------hcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hh
Confidence            46788888888886 666544             34899999999999762             222211  23344 44


Q ss_pred             cCCCCCc-ccchhhh-------------------CCCCccEEEcc--CCccccCCccccccCcccEEEcCCCcCCc----
Q 007962           75 VSHNKLS-ELPAAIG-------------------ELHMLKSLDVS--FNSIMKIPDEIGSATALVKFDCSSNQLKE----  128 (583)
Q Consensus        75 L~~~~l~-~l~~~~~-------------------~~~~L~~L~L~--~~~l~~l~~~~~~l~~L~~L~l~~~~~~~----  128 (583)
                      ++++.+. .++..+.                   ....++.+.+.  .|.++.+|..++++++|++|++++|.++.    
T Consensus       145 l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~  224 (636)
T 4eco_A          145 YQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENIC  224 (636)
T ss_dssp             HHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred             HHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccccc
Confidence            4444333 1111111                   11222333332  35666788888888888888888888887    


Q ss_pred             --------------CCcccc--cCCCCCEEEccccccC-CCCcccccCCCCcEEEecCCc-cee-echhhhccc------
Q 007962          129 --------------LPSSLG--RCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNK-LTV-LSNNLIASW------  183 (583)
Q Consensus       129 --------------~~~~~~--~~~~L~~L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~-i~~-~~~~~~~~~------  183 (583)
                                    +|..++  ++++|++|++++|.+. .+|..+.++++|++|++++|. +.. ..+..+..+      
T Consensus       225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l  304 (636)
T 4eco_A          225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG  304 (636)
T ss_dssp             SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred             ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence                          888888  8899999999888765 678888889999999999887 774 223335554      


Q ss_pred             ccCcEEEcCCCcCCccch--hhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCC-CCEEE
Q 007962          184 TMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSK-LGTLD  259 (583)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~-L~~L~  259 (583)
                      ++|++|++++|.+..+|.  .++.+++|+.|++++|.+. .+| .+..+++|+.|++++|.+..+|..+..+++ |++|+
T Consensus       305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~  383 (636)
T 4eco_A          305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS  383 (636)
T ss_dssp             GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred             CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence            889999999999988888  8889999999999999988 788 888899999999999998888888888888 99999


Q ss_pred             ccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCc
Q 007962          260 LHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (583)
Q Consensus       260 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  339 (583)
                      +++|.++.++......                    .+++|+++++++|.+.......+..                   
T Consensus       384 Ls~N~l~~lp~~~~~~--------------------~l~~L~~L~Ls~N~l~~~~p~~l~~-------------------  424 (636)
T 4eco_A          384 FAHNKLKYIPNIFDAK--------------------SVSVMSAIDFSYNEIGSVDGKNFDP-------------------  424 (636)
T ss_dssp             CCSSCCSSCCSCCCTT--------------------CSSCEEEEECCSSCTTTTTTCSSCT-------------------
T ss_pred             ccCCcCcccchhhhhc--------------------ccCccCEEECcCCcCCCcchhhhcc-------------------
Confidence            9888877655432211                    1124444444444443221111100                   


Q ss_pred             ccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCcc-ccCCCCCcEEEccCCCCCCC
Q 007962          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW  418 (583)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~-l~~~~~L~~L~l~~~~l~~~  418 (583)
                                                      .....+..++|++|++++|.++.+|.. +..+++|++|++++|.++.+
T Consensus       425 --------------------------------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          425 --------------------------------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             --------------------------------TCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             --------------------------------cccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence                                            000001223455555555555554443 23355555555555555544


Q ss_pred             ChhhhhcC-------CCCcEEecCCCCCccCCCCcc-CCCCcccEEeCCCCccCCCCCCCCCCCCccceEecc------c
Q 007962          419 PDAILTSL-------SSLSCLKLDNNPLRQVPSDGF-KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR------R  484 (583)
Q Consensus       419 ~~~~l~~l-------~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~------~  484 (583)
                      +...+...       ++|+.|++++|.++.++...+ ..+++|+.|++++|.++. .+..+..+++|++|+++      +
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~  551 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG  551 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred             CHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence            43333322       266666666666665554322 256666666666666665 34455566666666664      4


Q ss_pred             cccc-ccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCC
Q 007962          485 MQLR-EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP  537 (583)
Q Consensus       485 ~~l~-~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~  537 (583)
                      |.+. .+|..+..+++|++|++++|.++.+|..+.  ++|++|++++|++..++
T Consensus       552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          552 NRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             CcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcccc
Confidence            4443 677788888888888888888888887654  78899999998877554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.5e-41  Score=356.91  Aligned_cols=436  Identities=23%  Similarity=0.321  Sum_probs=287.7

Q ss_pred             CCCcEEEcCCCCCc-ccchhhhCCCCccEEEc-cCCccccC-Ccccccc----C-----cccE------EEcC-CCcCC-
Q 007962           68 PLLTVLNVSHNKLS-ELPAAIGELHMLKSLDV-SFNSIMKI-PDEIGSA----T-----ALVK------FDCS-SNQLK-  127 (583)
Q Consensus        68 ~~L~~L~L~~~~l~-~l~~~~~~~~~L~~L~L-~~~~l~~l-~~~~~~l----~-----~L~~------L~l~-~~~~~-  127 (583)
                      .+++.|+|+++.+. .+|+.++++++|++|+| ++|.+... +......    .     .++.      +... ...+. 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57899999999988 77889999999999999 77765421 1110000    0     0000      0000 00000 


Q ss_pred             -----------cCCcccccCCCCCEEEccc--cccCCCCcccccCCCCcEEEecCCccee------------------ec
Q 007962          128 -----------ELPSSLGRCLNLSDFKASN--NCITSLPEDLADCSKMSKLDVEGNKLTV------------------LS  176 (583)
Q Consensus       128 -----------~~~~~~~~~~~L~~L~l~~--~~~~~l~~~l~~l~~L~~L~l~~~~i~~------------------~~  176 (583)
                                 ..+........++.+.+..  |.+..+|..+.++++|++|++++|.+..                  ++
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP  482 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN  482 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence                       0000000111222222221  3333344444445555555555444444                  32


Q ss_pred             hhhhc--ccccCcEEEcCCCcC-CccchhhcCCccccEEEccCCc-Ccc--cCCCC-------cCCCCCcEEEcCCCCCc
Q 007962          177 NNLIA--SWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNR-ILS--IPSSI-------SGCCSLAEFYMGNNALS  243 (583)
Q Consensus       177 ~~~~~--~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~-~~~--~~~~~-------~~~~~L~~L~l~~~~~~  243 (583)
                      .. +.  .+++|+.|++++|.+ ..+|..++.+++|+.|++++|. +..  +|..+       ..+++|+.|++++|.+.
T Consensus       483 ~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          483 EE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             SC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             hh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            22 22  455555555555543 3344455555555555555554 432  33322       23346666666666666


Q ss_pred             cCch--hhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCC-CcEEecCCCccccccccccCC
Q 007962          244 ALPA--ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT-LRKLLLTGNPLRTLRSSLVNG  320 (583)
Q Consensus       244 ~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~  320 (583)
                      .+|.  .++.+++|++|++++|.+..++......+|+.|++++|.+..+|..+..+++ |++|++++|.+..++      
T Consensus       562 ~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp------  635 (876)
T 4ecn_A          562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP------  635 (876)
T ss_dssp             BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCC------
T ss_pred             ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCc------
Confidence            6666  6666666666666666666555222233466667777777777777888888 999999988765332      


Q ss_pred             CcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhc--cCCccEEEcCCCCCCcCCcc
Q 007962          321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE--AGEITKLDLSRNSIQELPPE  398 (583)
Q Consensus       321 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~l~~l~~~  398 (583)
                                                                           ..+..  .++|+.|++++|.+...++.
T Consensus       636 -----------------------------------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          636 -----------------------------------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             -----------------------------------------------------SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             -----------------------------------------------------hhhhccccCCCCEEECcCCcCCCcccc
Confidence                                                                 22222  23589999999988663322


Q ss_pred             ----cc--CCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCC-------CcccEEeCCCCccCC
Q 007962          399 ----LS--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI-------PMLQILDLSYNIASL  465 (583)
Q Consensus       399 ----l~--~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~  465 (583)
                          +.  .+++|+.|++++|.+..++...+..+++|+.|++++|.+..++...+...       ++|+.|++++|.++.
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~  742 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS  742 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence                22  45689999999999999988888899999999999999998887655543       499999999999985


Q ss_pred             CCCCCCC--CCCccceEecccccccccccchhccCcccEEeCCC------CcCC-ccchhhcCCCCCCEEeCCCCCCCcC
Q 007962          466 PENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSLQ-SIPEGFKNLTSLTELDLSDNNISAL  536 (583)
Q Consensus       466 ~~~~~~~--~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~------n~l~-~l~~~l~~~~~L~~L~l~~~~l~~~  536 (583)
                      + +..+.  .+++|+.|+|++|.++.+|..++.+++|+.|++++      |.+. .+|..+.++++|++|++++|+|+.+
T Consensus       743 l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~I  821 (876)
T 4ecn_A          743 L-SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV  821 (876)
T ss_dssp             C-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             c-hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCcc
Confidence            4 44555  89999999999999999999999999999999987      5555 7788999999999999999999999


Q ss_pred             CCCccccccccceeeccCCCCccchhHHhcc
Q 007962          537 PPELGLLEPSLQALRLDGNPLRSIRRTILDR  567 (583)
Q Consensus       537 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  567 (583)
                      |..+.   ++|+.|++++|++..++...+..
T Consensus       822 p~~l~---~~L~~LdLs~N~l~~i~~~~~~~  849 (876)
T 4ecn_A          822 DEKLT---PQLYILDIADNPNISIDVTSVCP  849 (876)
T ss_dssp             CSCCC---SSSCEEECCSCTTCEEECGGGHH
T ss_pred             CHhhc---CCCCEEECCCCCCCccChHHccc
Confidence            98754   69999999999999888666533

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.2e-41  Score=348.34  Aligned_cols=449  Identities=21%  Similarity=0.214  Sum_probs=276.7

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~   89 (583)
                      +++||++++++++|..++               +++++|++++|.++.++ ..|.++++|++|++++|.++.+ |.+|..
T Consensus        34 ~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~   98 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF   98 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT
T ss_pred             cEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC
Confidence            566777777777666552               35677777777776665 4666777777777777766655 446666


Q ss_pred             CCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCC--cccccCCCCCEEEccccccCCCCcccccCCCC--cEE
Q 007962           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL  165 (583)
Q Consensus        90 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L--~~L  165 (583)
                      +++|++|++++|.++.+|..  .+++|++|++++|.+..++  ..+.++++|++|++++|.+...  .+..+++|  ++|
T Consensus        99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L  174 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCI  174 (562)
T ss_dssp             CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEE
T ss_pred             CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEE
Confidence            77777777777766666655  5666667777666666543  4666666666666666665532  33334444  666


Q ss_pred             EecCCcc--eeechhhhcccc-cCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCC
Q 007962          166 DVEGNKL--TVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL  242 (583)
Q Consensus       166 ~l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~  242 (583)
                      ++++|.+  .......+..+. ..-.+++++|.+....                     ....+..+++|+.+++++|..
T Consensus       175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~---------------------~~~~~~~l~~L~~L~l~~n~~  233 (562)
T 3a79_B          175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ---------------------VNMSVNALGHLQLSNIKLNDE  233 (562)
T ss_dssp             EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC---------------------CEEEESSEEEEEEEEEECCST
T ss_pred             EeecccccccccCcccccccCcceEEEEecCccchhhh---------------------hhhcccccceEEEeccccccc
Confidence            6666655  333322222221 0112233333332100                     011233444555555555431


Q ss_pred             -----ccCchhhhCCCCCCEEEccCCcccc-----cccccccccccEEECcCCCCC-CCChhh-----cccCCCcEEecC
Q 007962          243 -----SALPAELGKLSKLGTLDLHSNQLKE-----YCVEACQLRLSVLDLSNNSLS-GLPPEI-----GKMTTLRKLLLT  306 (583)
Q Consensus       243 -----~~l~~~l~~~~~L~~L~l~~~~l~~-----~~~~~~~~~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~l~  306 (583)
                           ......+..+++|+.+++.++.+..     ++......++++|++++|.+. .+|..+     .+++.|+.+++.
T Consensus       234 ~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~  313 (562)
T 3a79_B          234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK  313 (562)
T ss_dssp             THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE
T ss_pred             ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcc
Confidence                 1223345566666666666554432     222222235666666666665 354443     334444444443


Q ss_pred             CCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEE
Q 007962          307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD  386 (583)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~  386 (583)
                      .+.+ .++..                                                       ....+....+|++|+
T Consensus       314 ~~~~-~~p~~-------------------------------------------------------~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          314 NQVF-LFSKE-------------------------------------------------------ALYSVFAEMNIKMLS  337 (562)
T ss_dssp             ECCC-SSCHH-------------------------------------------------------HHHHHHHTCCCSEEE
T ss_pred             ccee-ecChh-------------------------------------------------------hhhhhhccCcceEEE
Confidence            3322 11000                                                       000111224678888


Q ss_pred             cCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCC--CccCCCCcccEEeCCCCccC
Q 007962          387 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIAS  464 (583)
Q Consensus       387 l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  464 (583)
                      +++|.+...+ ....+++|++|++++|.+.+.....+..+++|+.|++++|.+++++.  ..+.++++|++|++++|.+.
T Consensus       338 l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          338 ISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             EESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             ccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence            8887765543 12567888888888888887666667888888888888888887653  34778888888888888887


Q ss_pred             C-CCCCCCCCCCccceEecccccccc-cccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccc
Q 007962          465 L-PENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL  542 (583)
Q Consensus       465 ~-~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~  542 (583)
                      . .....+..+++|++|++++|.++. ++..+.  ++|++|++++|.++.+|..+..+++|++|++++|+|+.+|+..+.
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~  494 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFD  494 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTT
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHh
Confidence            7 555567788888899988888863 333222  689999999999998888777889999999999999988887555


Q ss_pred             cccccceeeccCCCCcc
Q 007962          543 LEPSLQALRLDGNPLRS  559 (583)
Q Consensus       543 ~~~~L~~L~l~~~~~~~  559 (583)
                      .+++|+.|++++|+++.
T Consensus       495 ~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          495 RLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             TCTTCCCEECCSCCBCC
T ss_pred             cCCCCCEEEecCCCcCC
Confidence            55889999999998863

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-38  Score=318.39  Aligned_cols=405  Identities=26%  Similarity=0.302  Sum_probs=196.3

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCc-ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~  122 (583)
                      .+.|++|++++|.+..+|..++++++|++|++++|.+. .+|..++.+++|+.+++..|..          .++++|+++
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~l~   79 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELELN   79 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEECT
T ss_pred             cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEEec
Confidence            46788888888888888888888888888888888776 6677777777764444443321          234666666


Q ss_pred             CCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchh
Q 007962          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (583)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (583)
                      +|.++.+|..   .++|++|++++|.+..+|..   .++|++|++++|.+..++..    .++|++|++++|.++.+| .
T Consensus        80 ~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~  148 (454)
T 1jl5_A           80 NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-E  148 (454)
T ss_dssp             TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-C
T ss_pred             CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-c
Confidence            6666655542   25666666666666655532   35666666666666554321    146777777777666666 4


Q ss_pred             hcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEEC
Q 007962          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (583)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l  282 (583)
                      ++.+++|++|++++|.+..+|..+   ++|++|++++|.+..+| .++.+++|++|++++|.++.++..  ..+++++++
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l  222 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVA  222 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC--CTTCCEEEC
T ss_pred             cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC--cCcccEEEC
Confidence            666777777777777766665433   46777777777777665 467777777777777777665442  246788888


Q ss_pred             cCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccccee
Q 007962          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (583)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (583)
                      ++|.+..++ .++.+++|+++++++|.+..++..                                              
T Consensus       223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~----------------------------------------------  255 (454)
T 1jl5_A          223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL----------------------------------------------  255 (454)
T ss_dssp             CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC----------------------------------------------
T ss_pred             cCCcCCccc-ccCCCCCCCEEECCCCcCCccccc----------------------------------------------
Confidence            888777776 477888888888888876433210                                              


Q ss_pred             ecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccC
Q 007962          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (583)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  442 (583)
                                      .++|++|++++|.+..+|..   .++|++|++++|.+.+++.    ..++|+.|++++|.++++
T Consensus       256 ----------------~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i  312 (454)
T 1jl5_A          256 ----------------PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL  312 (454)
T ss_dssp             ----------------CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE
T ss_pred             ----------------ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc
Confidence                            12344444444444444332   2444455554444443221    113455555555544433


Q ss_pred             CCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCc---cchhhcC
Q 007962          443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS---IPEGFKN  519 (583)
Q Consensus       443 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~---l~~~l~~  519 (583)
                      +.    -.++|++|++++|.++....    .+++|++|++++|.++.+|.   .+++|++|++++|.++.   +|..+..
T Consensus       313 ~~----~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~  381 (454)
T 1jl5_A          313 CD----LPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVED  381 (454)
T ss_dssp             CC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred             cC----CcCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence            21    01345555555554443211    13455555555555554444   24455555555555443   2333333


Q ss_pred             C-------------CCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccc
Q 007962          520 L-------------TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI  560 (583)
Q Consensus       520 ~-------------~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~  560 (583)
                      +             ++|++|++++|+++.++.    .+++++.|.+.+|.+...
T Consensus       382 L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~----iP~sl~~L~~~~~~~~~~  431 (454)
T 1jl5_A          382 LRMNSHLAEVPELPQNLKQLHVETNPLREFPD----IPESVEDLRMNSERVVDP  431 (454)
T ss_dssp             EECCC-------------------------------------------------
T ss_pred             hhhcccccccccccCcCCEEECCCCcCCcccc----chhhHhheeCcCcccCCc
Confidence            3             789999999998886543    235788888888876544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.5e-37  Score=329.65  Aligned_cols=477  Identities=21%  Similarity=0.244  Sum_probs=367.3

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-h
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~   86 (583)
                      +.++++|+++|+++.+|...+..            +++|++|+|++|.|+.+++ .|+++++|++|+|++|+++.+|. +
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~  119 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA  119 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH
Confidence            36899999999999999866543            7899999999999999965 79999999999999999999875 7


Q ss_pred             hhCCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCc--CCcccccCCCCCEEEccccccCCCC-cccccCCC-
Q 007962           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSK-  161 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~-  161 (583)
                      |.++++|++|++++|.++.++. .|+++++|++|++++|.+..  .|..+..+++|++|++++|.+..++ ..+..+.+ 
T Consensus       120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l  199 (635)
T 4g8a_A          120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  199 (635)
T ss_dssp             GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred             hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence            8999999999999999998875 58999999999999999874  4678899999999999999998653 34444433 


Q ss_pred             ---CcEEEecCCcceeechhhhcccccCcEEEcCCCcCC--ccchhhcCCc-----------------------------
Q 007962          162 ---MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN--GMPETIGSLS-----------------------------  207 (583)
Q Consensus       162 ---L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l~~~~-----------------------------  207 (583)
                         ...++++.+.+..+....+.. ..++.+++.++...  ..+..+..+.                             
T Consensus       200 ~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~  278 (635)
T 4g8a_A          200 PLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL  278 (635)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred             hhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence               346788888888776653333 34455555554331  1111222222                             


Q ss_pred             -cccEEEccCCcC----cccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEEC
Q 007962          208 -RLIRLDLHQNRI----LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (583)
Q Consensus       208 -~L~~L~l~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l  282 (583)
                       .+....+..+..    ......+....+++.+.+.++.+..++ .+.....++.|++.++.+..+.... ...++.+.+
T Consensus       279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~-l~~L~~l~l  356 (635)
T 4g8a_A          279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTF  356 (635)
T ss_dssp             GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCCCB-CTTCCEEEE
T ss_pred             cchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCccc-chhhhhccc
Confidence             223232222211    133345566778899999888777653 4566789999999999887665432 345888888


Q ss_pred             cCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccccee
Q 007962          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (583)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (583)
                      ..+...... ....+++++.++++.+.+.......                                 .......+++.+
T Consensus       357 ~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~---------------------------------~~~~~~~~L~~L  402 (635)
T 4g8a_A          357 TSNKGGNAF-SEVDLPSLEFLDLSRNGLSFKGCCS---------------------------------QSDFGTISLKYL  402 (635)
T ss_dssp             ESCCSCCBC-CCCBCTTCCEEECCSSCCBEEEECC---------------------------------HHHHSCSCCCEE
T ss_pred             ccccCCCCc-ccccccccccchhhccccccccccc---------------------------------cchhhhhhhhhh
Confidence            888766543 3456899999999998764332110                                 011123467888


Q ss_pred             ecCCCCCccCChhhhccCCccEEEcCCCCCCcCC--ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCc
Q 007962          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (583)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  440 (583)
                      ++..+....++..+..++.|+.+++..+......  ..+..+++++.++++.|.+.......+..+++|+.|++++|.+.
T Consensus       403 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~  482 (635)
T 4g8a_A          403 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ  482 (635)
T ss_dssp             ECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred             hccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccc
Confidence            8888887777777778899999999988765532  35778999999999999999888888899999999999999754


Q ss_pred             -cCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccccc-chhccCcccEEeCCCCcCCcc-chhh
Q 007962          441 -QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI-PEGF  517 (583)
Q Consensus       441 -~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l-~~~l  517 (583)
                       .+....|..+++|++|++++|+++...+.+|..+++|++|+|++|+++.++. .+..+++|++|++++|.++.+ |+.+
T Consensus       483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence             3555668999999999999999999988899999999999999999998754 467899999999999999966 4567


Q ss_pred             cCC-CCCCEEeCCCCCCC
Q 007962          518 KNL-TSLTELDLSDNNIS  534 (583)
Q Consensus       518 ~~~-~~L~~L~l~~~~l~  534 (583)
                      ..+ ++|++|++++|++.
T Consensus       563 ~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          563 QHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TCCCTTCCEEECTTCCBC
T ss_pred             HhhhCcCCEEEeeCCCCc
Confidence            777 68999999998665

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.2e-37  Score=323.59  Aligned_cols=424  Identities=22%  Similarity=0.239  Sum_probs=318.6

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAI   87 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~~~   87 (583)
                      +.++++|+++++++.++...+..            +++|++|++++|.++.+ |..|.++++|++|++++|.++.+|.. 
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-  118 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISF------------LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC-  118 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTT------------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred             CCcCEEECCCCCccccChhhhcc------------CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence            57899999999999999755443            78999999999999988 56799999999999999999999877 


Q ss_pred             hCCCCccEEEccCCccccCC--ccccccCcccEEEcCCCcCCcCCcccccCCCC--CEEEcccccc--C-CCCcccccCC
Q 007962           88 GELHMLKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLKELPSSLGRCLNL--SDFKASNNCI--T-SLPEDLADCS  160 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~-~l~~~l~~l~  160 (583)
                       .+++|++|++++|.++.++  ..+.++++|++|++++|.+...  .+..+++|  ++|++++|.+  . ..+..+..+.
T Consensus       119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~  195 (562)
T 3a79_B          119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN  195 (562)
T ss_dssp             -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred             -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccC
Confidence             8999999999999998754  7899999999999999998753  45666667  9999999988  4 3455566554


Q ss_pred             -CCcEEEecCCccee-echhhhcccccCcEEEcCCCcC-----CccchhhcCCccccEEEccCCcCc-----ccCCCCcC
Q 007962          161 -KMSKLDVEGNKLTV-LSNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRIL-----SIPSSISG  228 (583)
Q Consensus       161 -~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~  228 (583)
                       ..-.+++++|.+.. +....+..+++|+.+++++|..     ......+..+++|+.+++.++.+.     .++..+ .
T Consensus       196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~  274 (562)
T 3a79_B          196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-W  274 (562)
T ss_dssp             EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-T
T ss_pred             cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-h
Confidence             11245667666553 3334466778888898888742     222345566777777777766544     122111 2


Q ss_pred             CCCCcEEEcCCCCCc-cCchhh-----hCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCCh-hhc---ccC
Q 007962          229 CCSLAEFYMGNNALS-ALPAEL-----GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIG---KMT  298 (583)
Q Consensus       229 ~~~L~~L~l~~~~~~-~l~~~l-----~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~---~~~  298 (583)
                      .++|++|++++|.+. .+|..+     ..++.|+.+++..+.                      + .+|. .+.   ...
T Consensus       275 ~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~----------------------~-~~p~~~~~~~~~~~  331 (562)
T 3a79_B          275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV----------------------F-LFSKEALYSVFAEM  331 (562)
T ss_dssp             TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC----------------------C-SSCHHHHHHHHHTC
T ss_pred             cccccEEEEeccEeeccccchhhhcccccchheehhhcccce----------------------e-ecChhhhhhhhccC
Confidence            236677777766665 555544     233333333333222                      2 2221 111   125


Q ss_pred             CCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhc
Q 007962          299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE  378 (583)
Q Consensus       299 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~  378 (583)
                      ++++++++++.+....                                                            ....
T Consensus       332 ~L~~L~l~~n~~~~~~------------------------------------------------------------~~~~  351 (562)
T 3a79_B          332 NIKMLSISDTPFIHMV------------------------------------------------------------CPPS  351 (562)
T ss_dssp             CCSEEEEESSCCCCCC------------------------------------------------------------CCSS
T ss_pred             cceEEEccCCCccccc------------------------------------------------------------CccC
Confidence            6777777776542110                                                            0023


Q ss_pred             cCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCCh--hhhhcCCCCcEEecCCCCCcc-CCCCccCCCCccc
Q 007962          379 AGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPD--AILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQ  454 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~--~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~  454 (583)
                      +++|++|++++|.+++ +|..+..+++|++|++++|.+..+..  ..+..+++|+.|++++|.++. ++...+..+++|+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            5688999999998887 66778899999999999999988654  457889999999999999998 7777788999999


Q ss_pred             EEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCCCC
Q 007962          455 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI  533 (583)
Q Consensus       455 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~l  533 (583)
                      +|++++|.+++..+..+.  ++|++|++++|+++.+|..++.+++|++|++++|.++.+|.. +..+++|++|++++|++
T Consensus       432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            999999998765443332  799999999999999999888999999999999999999887 89999999999999987


Q ss_pred             C
Q 007962          534 S  534 (583)
Q Consensus       534 ~  534 (583)
                      .
T Consensus       510 ~  510 (562)
T 3a79_B          510 D  510 (562)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.8e-37  Score=307.21  Aligned_cols=404  Identities=26%  Similarity=0.283  Sum_probs=248.8

Q ss_pred             HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcch-hhhHhhCCCCCC-------------cEE
Q 007962            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPLL-------------TVL   73 (583)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-~l~~~~~~~~~L-------------~~L   73 (583)
                      .+.++++++++++++.+|..+.             ++++|++|++++|.++ .+|..++++++|             ++|
T Consensus        10 ~~~L~~L~l~~n~l~~iP~~i~-------------~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L   76 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEMPVEAE-------------NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHEL   76 (454)
T ss_dssp             -------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEE
T ss_pred             cccchhhhcccCchhhCChhHh-------------cccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEE
Confidence            4789999999999999998664             3789999999999988 678888888765             889


Q ss_pred             EcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCC
Q 007962           74 NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP  153 (583)
Q Consensus        74 ~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~  153 (583)
                      ++++|.++.+|..   .++|++|++++|.++.+|..   .++|++|++++|.++.++..   .++|++|++++|.+..+|
T Consensus        77 ~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp  147 (454)
T 1jl5_A           77 ELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP  147 (454)
T ss_dssp             ECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred             EecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence            9999988887762   47889999999888887753   37889999999888877643   268899999998888887


Q ss_pred             cccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCc
Q 007962          154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA  233 (583)
Q Consensus       154 ~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  233 (583)
                       .+..+++|++|++++|.+..++..    ..+|++|++++|.+..+| .++.+++|+.|++++|.+..+|...   ++|+
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~  218 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLE  218 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCC
T ss_pred             -ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Cccc
Confidence             588888999999988888876542    358888888888888876 5788888888888888887766533   5788


Q ss_pred             EEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccc
Q 007962          234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL  313 (583)
Q Consensus       234 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  313 (583)
                      .|++++|.+..+| .++.+++|++|++++|.++.++..  ..+++++++++|.+.+++..   .++|+++++++|.+..+
T Consensus       219 ~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          219 SIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             EEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE
T ss_pred             EEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc
Confidence            8888888888777 477888888888888887765542  34577777777777666543   25666777766655322


Q ss_pred             cccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCC
Q 007962          314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ  393 (583)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  393 (583)
                      +                                                           ..   .++|+.|++++|.++
T Consensus       293 ~-----------------------------------------------------------~~---~~~L~~L~l~~N~l~  310 (454)
T 1jl5_A          293 S-----------------------------------------------------------EL---PPNLYYLNASSNEIR  310 (454)
T ss_dssp             S-----------------------------------------------------------CC---CTTCCEEECCSSCCS
T ss_pred             c-----------------------------------------------------------Cc---CCcCCEEECcCCcCC
Confidence            1                                                           10   146788888888777


Q ss_pred             cCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCC--CCCCC
Q 007962          394 ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP--ENPPF  471 (583)
Q Consensus       394 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~  471 (583)
                      .++..   .++|++|++++|++.+++.    .+++|+.|++++|.++.++.    .+++|++|++++|.++..  .+.  
T Consensus       311 ~i~~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N~l~~l~~ip~--  377 (454)
T 1jl5_A          311 SLCDL---PPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYNPLREFPDIPE--  377 (454)
T ss_dssp             EECCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCCCCT--
T ss_pred             cccCC---cCcCCEEECCCCccccccc----cCCcCCEEECCCCccccccc----hhhhccEEECCCCCCCcCCCChH--
Confidence            65431   2578888888888877543    25788888888888887665    367888888888887763  222  


Q ss_pred             CCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCC
Q 007962          472 SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS  534 (583)
Q Consensus       472 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~  534 (583)
                          .+..|.. ++....+|.   .+++|++|++++|.++.+|..   -++++.|.+.+|.+.
T Consensus       378 ----~l~~L~~-n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~  429 (454)
T 1jl5_A          378 ----SVEDLRM-NSHLAEVPE---LPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVV  429 (454)
T ss_dssp             ----TCCEEEC-CC-------------------------------------------------
T ss_pred             ----HHHhhhh-ccccccccc---ccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccC
Confidence                2333322 112234443   247899999999999865432   146788888888766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.4e-35  Score=296.16  Aligned_cols=350  Identities=26%  Similarity=0.413  Sum_probs=225.2

Q ss_pred             CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  168 (583)
                      .+++|+.|++.++.+..+| .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|+++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~  120 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF  120 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             HhccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence            4568889999988888776 47888899999999998888876 8888899999999888887765 8888888888888


Q ss_pred             CCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchh
Q 007962          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (583)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~  248 (583)
                      +|.+..++.  +..+++|++|++++|.+..++ .+..+++|+.|++++ .+..++ .+..+++|+.|++++|.+..++ .
T Consensus       121 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~  194 (466)
T 1o6v_A          121 NNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERLDISSNKVSDIS-V  194 (466)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEEECCSSCCCCCG-G
T ss_pred             CCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEEECcCCcCCCCh-h
Confidence            888887765  778888888888888877765 367778888888763 333332 3667777777777777766553 3


Q ss_pred             hhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHH
Q 007962          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY  328 (583)
Q Consensus       249 l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  328 (583)
                      +..+++|++|++++|.+.....                       ++.+++|++|++++|.+..+               
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~---------------  236 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP-----------------------LGILTNLDELSLNGNQLKDI---------------  236 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-----------------------GGGCTTCCEEECCSSCCCCC---------------
T ss_pred             hccCCCCCEEEecCCccccccc-----------------------ccccCCCCEEECCCCCcccc---------------
Confidence            5666777777776666554433                       33445555555555443211               


Q ss_pred             HHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEE
Q 007962          329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTL  408 (583)
Q Consensus       329 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L  408 (583)
                                                                   ..+..+++|++|++++|.+..++. +..+++|++|
T Consensus       237 ---------------------------------------------~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  270 (466)
T 1o6v_A          237 ---------------------------------------------GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL  270 (466)
T ss_dssp             ---------------------------------------------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             ---------------------------------------------hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence                                                         112234455555555555554433 4555555555


Q ss_pred             EccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccc
Q 007962          409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (583)
Q Consensus       409 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  488 (583)
                      ++++|.+.+...  +..+++|+.|++++|.+.+++.  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.++
T Consensus       271 ~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  344 (466)
T 1o6v_A          271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS  344 (466)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             ECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccC
Confidence            555555555443  4555566666666555555433  4555566666666665554433  455566666666666655


Q ss_pred             ccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCC
Q 007962          489 EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  539 (583)
Q Consensus       489 ~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~  539 (583)
                      .+ ..+..+++|+.|++++|.+++++. +..+++|++|++++|+++.+|..
T Consensus       345 ~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          345 DV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             CC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred             Cc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence            55 245556666666666666664433 55666666666666665554443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.7e-35  Score=295.48  Aligned_cols=347  Identities=25%  Similarity=0.366  Sum_probs=198.4

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +++++.|+++++.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +.++++|++|++++
T Consensus        45 l~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~  121 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  121 (466)
T ss_dssp             HHTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hccccEEecCCCCCccCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCC
Confidence            457888888888888776 47778888888888888887766 7888888888888888777665 77888888888888


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      |.+..++. +..+++|++|++++|.+..++ .+..+++|++|++. +.+..+..  +..+++|+.|++++|.+..++ .+
T Consensus       122 n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l  195 (466)
T 1o6v_A          122 NQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDIS-VL  195 (466)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             CCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCCCh-hh
Confidence            88777754 777788888888887777664 46777777777775 23333322  555566666666666555443 24


Q ss_pred             cCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECc
Q 007962          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~  283 (583)
                      ..+++|+.|++++|.+..++. +..+++|+.|++++|.+..+ ..+..+++|++|++++|.                   
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~-------------------  254 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQ-------------------  254 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-------------------
T ss_pred             ccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCc-------------------
Confidence            445555555555554443322 33344444444444444433 123333344443333333                   


Q ss_pred             CCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceee
Q 007962          284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS  363 (583)
Q Consensus       284 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  363 (583)
                         +.+++. +..+++|++|++++|.+..++                                                 
T Consensus       255 ---l~~~~~-~~~l~~L~~L~l~~n~l~~~~-------------------------------------------------  281 (466)
T 1o6v_A          255 ---ISNLAP-LSGLTKLTELKLGANQISNIS-------------------------------------------------  281 (466)
T ss_dssp             ---CCCCGG-GTTCTTCSEEECCSSCCCCCG-------------------------------------------------
T ss_pred             ---cccchh-hhcCCCCCEEECCCCccCccc-------------------------------------------------
Confidence               333222 444455555555554432111                                                 


Q ss_pred             cCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCC
Q 007962          364 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVP  443 (583)
Q Consensus       364 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  443 (583)
                                . +..+++|++|++++|.+.+++. +..+++|+.|++++|.+.+..+  +..+++|+.|++++|++++++
T Consensus       282 ----------~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          282 ----------P-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             ----------G-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             ----------c-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch
Confidence                      1 2223445555555555554433 4455555555555555554433  345555555555555555442


Q ss_pred             CCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccc
Q 007962          444 SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP  491 (583)
Q Consensus       444 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  491 (583)
                        .+..+++|++|++++|.+++..+  +..+++|+.|++++|.++.+|
T Consensus       348 --~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          348 --SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             --GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred             --hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence              24455555555555555544433  444555555555555554433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.7e-35  Score=296.76  Aligned_cols=380  Identities=22%  Similarity=0.272  Sum_probs=265.8

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCc-cc-chhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLS-EL-PAAI   87 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~-~l-~~~~   87 (583)
                      .+.++|++++++++|. +               .++|++|++++|.++.+ +..|.++++|++|++++|.+. .+ +.+|
T Consensus        12 ~~~~~c~~~~l~~lp~-l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~   75 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-L---------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF   75 (455)
T ss_dssp             TTEEECCSSCCSSCCC-C---------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT
T ss_pred             ccccCcCCCCcccCCC-C---------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc
Confidence            3568999999999998 4               25799999999999987 568999999999999999886 55 4579


Q ss_pred             hCCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCc-CCc--ccccCCCCCEEEccccccCCC-Ccc-cccCCC
Q 007962           88 GELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPS--SLGRCLNLSDFKASNNCITSL-PED-LADCSK  161 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~-~~~--~~~~~~~L~~L~l~~~~~~~l-~~~-l~~l~~  161 (583)
                      .++++|++|++++|.++.+ |..+.++++|++|++++|.++. .+.  .+..+++|++|++++|.+..+ +.. +..+++
T Consensus        76 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           76 RGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             TTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             cccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            9999999999999998855 6789999999999999999874 333  378889999999999988866 333 788888


Q ss_pred             CcEEEecCCcceeechhhhccc--ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCC
Q 007962          162 MSKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN  239 (583)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  239 (583)
                      |++|++++|.+..+....+..+  .+++.++++++.+..++......              .....+..+++|++|++++
T Consensus       156 L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~--------------~~~~~~~~~~~L~~L~Ls~  221 (455)
T 3v47_A          156 FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW--------------EKCGNPFKNTSITTLDLSG  221 (455)
T ss_dssp             CCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH--------------HHHCCTTTTCEEEEEECTT
T ss_pred             ccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc--------------cccccccccceeeeEecCC
Confidence            9999988888887766555554  45666666666655443211000              0001233456677777777


Q ss_pred             CCCc-cCchhhhCC---CCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccc
Q 007962          240 NALS-ALPAELGKL---SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS  315 (583)
Q Consensus       240 ~~~~-~l~~~l~~~---~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  315 (583)
                      |.+. ..+..+...   ++|+.++++++.......                      ....+......     .+     
T Consensus       222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------~~~~~~~~~~~-----~~-----  269 (455)
T 3v47_A          222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF----------------------GHTNFKDPDNF-----TF-----  269 (455)
T ss_dssp             SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT----------------------TCCSSCCCCTT-----TT-----
T ss_pred             CcccccchhhhhccccccceeeEeecccccccccc----------------------chhhhccCccc-----cc-----
Confidence            7666 334444332   677777776664332100                      00000000000     00     


Q ss_pred             cccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc-
Q 007962          316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-  394 (583)
Q Consensus       316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-  394 (583)
                                                                                 .-...++|+++++++|.+.. 
T Consensus       270 -----------------------------------------------------------~~~~~~~L~~L~l~~n~l~~~  290 (455)
T 3v47_A          270 -----------------------------------------------------------KGLEASGVKTCDLSKSKIFAL  290 (455)
T ss_dssp             -----------------------------------------------------------GGGTTSCCCEEECCSSCCCEE
T ss_pred             -----------------------------------------------------------ccccccCceEEEecCcccccc
Confidence                                                                       00012456777777777666 


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCC
Q 007962          395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL  474 (583)
Q Consensus       395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  474 (583)
                      .+..+..+++|++|++++|.+.+.....|..+++|++|++++|.++++....|.++++|++|++++|.++...+..+..+
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  370 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL  370 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence            34556777777788887777777766667777788888888887777766667777888888888887777767777778


Q ss_pred             CccceEecccccccccccc-hhccCcccEEeCCCCcCC
Q 007962          475 PHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       475 ~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~  511 (583)
                      ++|++|++++|.++.+|.. +..+++|++|++++|.++
T Consensus       371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            8888888888888776654 356788888888888776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=5.2e-35  Score=293.33  Aligned_cols=352  Identities=21%  Similarity=0.244  Sum_probs=222.0

Q ss_pred             cccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEE
Q 007962           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (583)
Q Consensus        41 ~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~  120 (583)
                      +.++++|++|++++|.++.+| .+.++++|++|++++|.++.++  ++.+++|++|++++|.++.++  +..+++|++|+
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN  112 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence            444677777888777777775 5777777778888777777764  777777777777777777664  67777777777


Q ss_pred             cCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC-cceeechhhhcccccCcEEEcCCCcCCcc
Q 007962          121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLNGM  199 (583)
Q Consensus       121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~~~~  199 (583)
                      +++|.++.++  +..+++|++|++++|.+..+  .+..+++|++|++++| .+..+   .+..+++|+.|++++|.++.+
T Consensus       113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCC
T ss_pred             CCCCcCCeec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCcccee
Confidence            7777777664  66777777777777777765  3666777777777777 33333   155666666677766666665


Q ss_pred             chhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccE
Q 007962          200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV  279 (583)
Q Consensus       200 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~  279 (583)
                      +  +..+++|+.|++++|.+..+  .+..+++|+.|++++|.+..+|  ++.+++|+.|++++|.++.+           
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~-----------  248 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL-----------  248 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-----------
T ss_pred             c--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc-----------
Confidence            4  55566666666666666655  2555666666666666666554  55556666666665555443           


Q ss_pred             EECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccc
Q 007962          280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS  359 (583)
Q Consensus       280 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  359 (583)
                                 +  .+.+++|+.++++.+.+                                                 
T Consensus       249 -----------~--~~~l~~L~~L~l~~n~L-------------------------------------------------  266 (457)
T 3bz5_A          249 -----------D--VSTLSKLTTLHCIQTDL-------------------------------------------------  266 (457)
T ss_dssp             -----------C--CTTCTTCCEEECTTCCC-------------------------------------------------
T ss_pred             -----------C--HHHCCCCCEEeccCCCC-------------------------------------------------
Confidence                       2  23455566666555432                                                 


Q ss_pred             ceeecCCCCCc-cCChhhhccCCccEEEcCCCCCCc-CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCC
Q 007962          360 KELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (583)
Q Consensus       360 ~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  437 (583)
                      +.+++++|... .++  ...+++|+.|++++|.... +|.   ..++|+.|+++             .+++|+.|++++|
T Consensus       267 ~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~-------------~~~~L~~L~L~~N  328 (457)
T 3bz5_A          267 LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS-------------QNPKLVYLYLNNT  328 (457)
T ss_dssp             SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT-------------TCTTCCEEECTTC
T ss_pred             CEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh-------------hcccCCEEECCCC
Confidence            22333333321 111  2335667777777765322 331   23344444433             3467778888888


Q ss_pred             CCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCC-ccchh
Q 007962          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIPEG  516 (583)
Q Consensus       438 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~-~l~~~  516 (583)
                      ++++++   +.++++|+.|++++|++++        ++.|..|.+++|.+...    ..+..|..+++++|.++ .+|..
T Consensus       329 ~l~~l~---l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          329 ELTELD---VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CCSCCC---CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccccc---cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec----ceeeecCccccccCcEEEEcChh
Confidence            777763   6677788888887777654        35566666777666643    24556777777777776 56544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.2e-34  Score=289.11  Aligned_cols=379  Identities=21%  Similarity=0.233  Sum_probs=211.2

Q ss_pred             cEEEccCCccccCCccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccC-CC-CcccccCCCCcEEEecCC
Q 007962           94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCIT-SL-PEDLADCSKMSKLDVEGN  170 (583)
Q Consensus        94 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~l-~~~l~~l~~L~~L~l~~~  170 (583)
                      +.++.+++.++.+|. +  .++|++|++++|.++.+ +..+.++++|++|++++|.+. .+ +..+..+++|++|++++|
T Consensus        13 ~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             TEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            356666666666665 2  25677777777777655 456667777777777777664 33 344666677777777777


Q ss_pred             cceeechhhhcccccCcEEEcCCCcCCc-cchh--hcCCccccEEEccCCcCccc-CCC-CcCCCCCcEEEcCCCCCccC
Q 007962          171 KLTVLSNNLIASWTMLTELIASKNLLNG-MPET--IGSLSRLIRLDLHQNRILSI-PSS-ISGCCSLAEFYMGNNALSAL  245 (583)
Q Consensus       171 ~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~--l~~~~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~~~~l  245 (583)
                      .+..+.+..+.++++|++|++++|.+.. ++..  +..+++|++|++++|.+..+ |.. +..+++|++|++++|.+..+
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            6666655556666666666666666543 2222  45555566666655555544 222 44555555555555554432


Q ss_pred             -chhhhCC--CCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCc
Q 007962          246 -PAELGKL--SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT  322 (583)
Q Consensus       246 -~~~l~~~--~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  322 (583)
                       +..+..+  ++|+.++++++.+..++.......             ....+..+++|++|++++|.+....        
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~-------------~~~~~~~~~~L~~L~Ls~n~l~~~~--------  228 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE-------------KCGNPFKNTSITTLDLSGNGFKESM--------  228 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHH-------------HHCCTTTTCEEEEEECTTSCCCHHH--------
T ss_pred             ChhhhhccccccccccccccCcccccchhhcccc-------------ccccccccceeeeEecCCCcccccc--------
Confidence             2223222  334444444443332221110000             0001223456666666666543211        


Q ss_pred             HHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhh---ccCCccEEEcCCCCCCcCCccc
Q 007962          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW---EAGEITKLDLSRNSIQELPPEL  399 (583)
Q Consensus       323 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~l~~~l  399 (583)
                                                                        +..+.   ...+|+.+++++|........ 
T Consensus       229 --------------------------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-  257 (455)
T 3v47_A          229 --------------------------------------------------AKRFFDAIAGTKIQSLILSNSYNMGSSFG-  257 (455)
T ss_dssp             --------------------------------------------------HHHHHHHTTTCCEEEEECTTCTTTSCCTT-
T ss_pred             --------------------------------------------------hhhhhccccccceeeEeeccccccccccc-
Confidence                                                              01111   124566666666543321100 


Q ss_pred             cCCCCCcEEEccCCCCCCCChhhhh--cCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCcc
Q 007962          400 SSCASLQTLILSRNKIKDWPDAILT--SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL  477 (583)
Q Consensus       400 ~~~~~L~~L~l~~~~l~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L  477 (583)
                                  .+.+.+.....+.  ..++|+.+++++|.+.++....+..+++|++|++++|.+....+..+..+++|
T Consensus       258 ------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  325 (455)
T 3v47_A          258 ------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL  325 (455)
T ss_dssp             ------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             ------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC
Confidence                        0111111111111  23567777777777666665566667777777777777766666666777777


Q ss_pred             ceEeccccccccc-ccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCC
Q 007962          478 QELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN  555 (583)
Q Consensus       478 ~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~  555 (583)
                      ++|++++|.++.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|+|+.+++..+..+++|+.|++++|
T Consensus       326 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  405 (455)
T 3v47_A          326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  405 (455)
T ss_dssp             CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCC
Confidence            7777777777655 34556677777777777777755 556777777777777777777777766555577777777777


Q ss_pred             CCcc
Q 007962          556 PLRS  559 (583)
Q Consensus       556 ~~~~  559 (583)
                      +++.
T Consensus       406 ~l~~  409 (455)
T 3v47_A          406 PWDC  409 (455)
T ss_dssp             CBCC
T ss_pred             Cccc
Confidence            7653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.7e-33  Score=282.27  Aligned_cols=259  Identities=27%  Similarity=0.350  Sum_probs=225.9

Q ss_pred             HHHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccc
Q 007962            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (583)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~   84 (583)
                      +.+.+.++++|+++++++++|. +             ..+++|++|++++|.++.++  ++++++|++|++++|.++.++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~-l-------------~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTG-I-------------EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTT-G-------------GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             hhHcCCCCEEEccCCCcccChh-h-------------cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence            4567899999999999999873 3             22789999999999999985  999999999999999999884


Q ss_pred             hhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEcccc-ccCCCCcccccCCCCc
Q 007962           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-CITSLPEDLADCSKMS  163 (583)
Q Consensus        85 ~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~l~~~l~~l~~L~  163 (583)
                        ++.+++|++|++++|.++.++  +..+++|++|++++|.++.++  ++.+++|++|++++| .+..+  .+..+++|+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence              899999999999999999875  899999999999999999874  889999999999999 45555  578899999


Q ss_pred             EEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc
Q 007962          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (583)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  243 (583)
                      +|++++|.+..++   +..+++|+.|++++|.++.++  ++.+++|+.|++++|.+..+|  +..+++|+.|++++|.+.
T Consensus       174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence            9999999999876   788999999999999998873  788999999999999999986  889999999999999999


Q ss_pred             cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCC-CChhhcccCCCcEEecCCCcc
Q 007962          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL  310 (583)
Q Consensus       244 ~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~  310 (583)
                      .++  ++.+++|+.++++.+.            ++.+++++|...+ ++  ++.+++|+.|++++|..
T Consensus       247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~  298 (457)
T 3bz5_A          247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQ  298 (457)
T ss_dssp             CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTT
T ss_pred             CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcc
Confidence            875  5678999999988764            4566777776544 33  46788999999988853

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=4.4e-32  Score=264.42  Aligned_cols=307  Identities=25%  Similarity=0.357  Sum_probs=216.0

Q ss_pred             cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEE
Q 007962          156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF  235 (583)
Q Consensus       156 l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  235 (583)
                      +..+++|++|+++++.+..++.  +..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L  115 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL  115 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             chhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence            3445666666666666655543  5555566666666665555544 555555555555555555442 34555555555


Q ss_pred             EcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccc
Q 007962          236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS  315 (583)
Q Consensus       236 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  315 (583)
                      ++++|.+..++. +..+++|++|++++|                      ........+..+++|+++++++|.+..+. 
T Consensus       116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n----------------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-  171 (347)
T 4fmz_A          116 YLNEDNISDISP-LANLTKMYSLNLGAN----------------------HNLSDLSPLSNMTGLNYLTVTESKVKDVT-  171 (347)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECTTC----------------------TTCCCCGGGTTCTTCCEEECCSSCCCCCG-
T ss_pred             ECcCCcccCchh-hccCCceeEEECCCC----------------------CCcccccchhhCCCCcEEEecCCCcCCch-
Confidence            555555554433 444455555554444                      33333334667778888888777653221 


Q ss_pred             cccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcC
Q 007962          316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL  395 (583)
Q Consensus       316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l  395 (583)
                                                                                . +..+++|++|++++|.+.++
T Consensus       172 ----------------------------------------------------------~-~~~l~~L~~L~l~~n~l~~~  192 (347)
T 4fmz_A          172 ----------------------------------------------------------P-IANLTDLYSLSLNYNQIEDI  192 (347)
T ss_dssp             ----------------------------------------------------------G-GGGCTTCSEEECTTSCCCCC
T ss_pred             ----------------------------------------------------------h-hccCCCCCEEEccCCccccc
Confidence                                                                      1 34567888888888888877


Q ss_pred             CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCC
Q 007962          396 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP  475 (583)
Q Consensus       396 ~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  475 (583)
                      +. +..+++|+.+++++|.+.+...  +..+++|+.|++++|.++.++.  +..+++|++|++++|.++..  ..+..++
T Consensus       193 ~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~  265 (347)
T 4fmz_A          193 SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT  265 (347)
T ss_dssp             GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC
Confidence            65 7788899999999998888765  6888999999999999888765  78899999999999988775  3578899


Q ss_pred             ccceEecccccccccccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccC
Q 007962          476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG  554 (583)
Q Consensus       476 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  554 (583)
                      +|++|++++|.++.++ .+..+++|+.|++++|.++.. +..+..+++|++|++++|+++.+++ +. .+++|+.|++++
T Consensus       266 ~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~-~l~~L~~L~l~~  342 (347)
T 4fmz_A          266 KLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LA-SLSKMDSADFAN  342 (347)
T ss_dssp             TCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GG-GCTTCSEESSSC
T ss_pred             CcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hh-hhhccceeehhh
Confidence            9999999999999874 578899999999999999854 5668899999999999999998877 33 348999999999


Q ss_pred             CCCcc
Q 007962          555 NPLRS  559 (583)
Q Consensus       555 ~~~~~  559 (583)
                      |+|++
T Consensus       343 N~i~~  347 (347)
T 4fmz_A          343 QVIKK  347 (347)
T ss_dssp             C----
T ss_pred             hcccC
Confidence            99863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.3e-32  Score=265.32  Aligned_cols=305  Identities=23%  Similarity=0.338  Sum_probs=218.8

Q ss_pred             ccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEc
Q 007962           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (583)
Q Consensus        42 ~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l  121 (583)
                      .++++|+.|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL  117 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred             hhcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence            34678888888888888775 37778888888888888887766 888888888888888877764 5778888888888


Q ss_pred             CCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch
Q 007962          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (583)
Q Consensus       122 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  201 (583)
                      ++|.+..++. +..+++|++|++++|........+..+++|++|++++|.+..+..  +..+++|++|++++|.+..++.
T Consensus       118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~  194 (347)
T 4fmz_A          118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP  194 (347)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG
T ss_pred             cCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc
Confidence            8888877755 777888888888888555444457778888888888887776655  6777777777777777776654


Q ss_pred             hhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEE
Q 007962          202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD  281 (583)
Q Consensus       202 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~  281 (583)
                       +..+++|+.+++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.+             
T Consensus       195 -~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-------------  258 (347)
T 4fmz_A          195 -LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-------------  258 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-------------
T ss_pred             -ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-------------
Confidence             6667777777777777665543 6666777777777777766654 66666777766666655543             


Q ss_pred             CcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccce
Q 007962          282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE  361 (583)
Q Consensus       282 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  361 (583)
                                +.+..+++|+++++++|.+..+                                                
T Consensus       259 ----------~~~~~l~~L~~L~l~~n~l~~~------------------------------------------------  280 (347)
T 4fmz_A          259 ----------NAVKDLTKLKMLNVGSNQISDI------------------------------------------------  280 (347)
T ss_dssp             ----------GGGTTCTTCCEEECCSSCCCCC------------------------------------------------
T ss_pred             ----------hhHhcCCCcCEEEccCCccCCC------------------------------------------------
Confidence                      2355667777777777755322                                                


Q ss_pred             eecCCCCCccCChhhhccCCccEEEcCCCCCCcC-CccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCc
Q 007962          362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR  440 (583)
Q Consensus       362 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~  440 (583)
                                  ..+..+++|++|++++|.+... +..+..+++|++|++++|.+++..+  +..+++|+.+++++|+++
T Consensus       281 ------------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 ------------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ------------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ------------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                        1233456777777777777653 3456777888888888888877665  577888888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.1e-31  Score=262.52  Aligned_cols=305  Identities=22%  Similarity=0.263  Sum_probs=162.8

Q ss_pred             CCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEE
Q 007962          136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLD  213 (583)
Q Consensus       136 ~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~  213 (583)
                      ++++++|+++++.+..+|.. +..+++|++|+++++.+..+....+..+++|++|++++|.+..++ ..++.+++|+.|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            45556666666655555443 455566666666666555555544555555555555555554443 2344555555555


Q ss_pred             ccCCcCcccCCC-CcCCCCCcEEEcCCCCCccCc-hhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC
Q 007962          214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (583)
Q Consensus       214 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (583)
                      +++|.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.++.                      + 
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~-  180 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----------------------V-  180 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB----------------------C-
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc----------------------c-
Confidence            555555544433 344555555555555554332 234444555555544444332                      2 


Q ss_pred             hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc
Q 007962          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (583)
Q Consensus       292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (583)
                       .+..+++|+++++++|.+..++                                                         
T Consensus       181 -~~~~l~~L~~L~l~~n~l~~~~---------------------------------------------------------  202 (390)
T 3o6n_A          181 -DLSLIPSLFHANVSYNLLSTLA---------------------------------------------------------  202 (390)
T ss_dssp             -CGGGCTTCSEEECCSSCCSEEE---------------------------------------------------------
T ss_pred             -ccccccccceeecccccccccC---------------------------------------------------------
Confidence             1334556666666665442210                                                         


Q ss_pred             CChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCC
Q 007962          372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (583)
Q Consensus       372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  451 (583)
                            ..+.|++|++++|.+..++..  ..++|+.|++++|.+++..  .+..+++|++|++++|.+.++....|.+++
T Consensus       203 ------~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  272 (390)
T 3o6n_A          203 ------IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  272 (390)
T ss_dssp             ------CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ------CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccc
Confidence                  123566677777666655432  2356666777666666542  345666666666666666665555556666


Q ss_pred             cccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCC
Q 007962          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN  531 (583)
Q Consensus       452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~  531 (583)
                      +|++|++++|.++... ..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++  +..+++|++|++++|
T Consensus       273 ~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          273 RLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  349 (390)
T ss_dssp             SCCEEECCSSCCCEEE-CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             cCCEEECCCCcCcccC-cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCC
Confidence            6666666666554432 1234455555555555555555555555555555555555555443  444555555555555


Q ss_pred             CCC
Q 007962          532 NIS  534 (583)
Q Consensus       532 ~l~  534 (583)
                      ++.
T Consensus       350 ~~~  352 (390)
T 3o6n_A          350 DWD  352 (390)
T ss_dssp             CEE
T ss_pred             Ccc
Confidence            444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.98  E-value=1.1e-30  Score=258.69  Aligned_cols=309  Identities=22%  Similarity=0.263  Sum_probs=242.5

Q ss_pred             cCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccccEEEccCCcCcccC-CCCcCCCCCcEE
Q 007962          158 DCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEF  235 (583)
Q Consensus       158 ~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L  235 (583)
                      .+++++.|+++++.+..++...+..+++|++|+++++.+..++. .+..+++|++|++++|.+..++ ..+..+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            35788888998888888888888888889999999888877654 6788888999999988888664 457888889999


Q ss_pred             EcCCCCCccCchh-hhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCcccccc
Q 007962          236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR  314 (583)
Q Consensus       236 ~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  314 (583)
                      ++++|.+..+|.. +..+++|++|++++|.+..++                     +..+..+++|++|++++|.+..++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~  181 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE---------------------DDTFQATTSLQNLQLSSNRLTHVD  181 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC---------------------TTTTSSCTTCCEEECCSSCCSBCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC---------------------hhhccCCCCCCEEECCCCcCCccc
Confidence            9998888887765 578888888888887765432                     224667788888888887663221


Q ss_pred             ccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc
Q 007962          315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE  394 (583)
Q Consensus       315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  394 (583)
                                                                                   +..+++|+.+++++|.++.
T Consensus       182 -------------------------------------------------------------~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          182 -------------------------------------------------------------LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             -------------------------------------------------------------GGGCTTCSEEECCSSCCSE
T ss_pred             -------------------------------------------------------------cccccccceeecccccccc
Confidence                                                                         2235678888888887765


Q ss_pred             CCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCC
Q 007962          395 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL  474 (583)
Q Consensus       395 l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  474 (583)
                      +    ...++|+.|++++|.+...+.   ...++|+.|++++|.+++.  ..+..+++|++|++++|.+....+..+..+
T Consensus       201 ~----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          201 L----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             E----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             c----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence            4    234678888998888877644   3357888899988888876  347788889999999888887777778888


Q ss_pred             CccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccC
Q 007962          475 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDG  554 (583)
Q Consensus       475 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~  554 (583)
                      ++|++|++++|.++.++..+..+++|++|++++|.++.+|..+..+++|++|++++|+|+.++..   .+++|+.|++++
T Consensus       272 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~L~~L~l~~  348 (390)
T 3o6n_A          272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLS---THHTLKNLTLSH  348 (390)
T ss_dssp             SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCCC---TTCCCSEEECCS
T ss_pred             ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeCch---hhccCCEEEcCC
Confidence            88999999999888887777788889999999998888887788888899999999988877632   337888999999


Q ss_pred             CCCccc
Q 007962          555 NPLRSI  560 (583)
Q Consensus       555 ~~~~~~  560 (583)
                      |+++..
T Consensus       349 N~~~~~  354 (390)
T 3o6n_A          349 NDWDCN  354 (390)
T ss_dssp             SCEEHH
T ss_pred             CCccch
Confidence            888654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=264.71  Aligned_cols=314  Identities=22%  Similarity=0.317  Sum_probs=165.0

Q ss_pred             cEEEcCCCCCcccchhhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccc
Q 007962           71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNC  148 (583)
Q Consensus        71 ~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~  148 (583)
                      +.++.++..++.+|..+.  +++++|++++|.++.+ +..|.++++|++|++++|.+..+ +..+.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            456666666666665442  4666677766666644 34566666666666666666544 4455666666666666666


Q ss_pred             cCCCCc-ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCccc-CCCC
Q 007962          149 ITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSI  226 (583)
Q Consensus       149 ~~~l~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~  226 (583)
                      +..++. .+..+++|++|++++|.+..+....+..+                       ++|+.|++++|.+..+ +..+
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-----------------------~~L~~L~l~~n~l~~~~~~~~  148 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-----------------------YNLKSLEVGDNDLVYISHRAF  148 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-----------------------TTCCEEEECCTTCCEECTTSS
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHcccc-----------------------ccCCEEECCCCccceeChhhc
Confidence            655543 24555556666665555555444434444                       4444444444444432 2344


Q ss_pred             cCCCCCcEEEcCCCCCccCch-hhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEec
Q 007962          227 SGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL  305 (583)
Q Consensus       227 ~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  305 (583)
                      ..+++|++|++++|.+..++. .+..+++|+.|++++|.+..++.                     ..+..+++|++|++
T Consensus       149 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~---------------------~~~~~l~~L~~L~l  207 (477)
T 2id5_A          149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD---------------------YSFKRLYRLKVLEI  207 (477)
T ss_dssp             TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT---------------------TCSCSCTTCCEEEE
T ss_pred             cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh---------------------hhcccCcccceeeC
Confidence            555555555555555554443 35566666666666665543221                     12444555666666


Q ss_pred             CCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEE
Q 007962          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL  385 (583)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L  385 (583)
                      ++|....                                                          .++.......+|++|
T Consensus       208 ~~~~~~~----------------------------------------------------------~~~~~~~~~~~L~~L  229 (477)
T 2id5_A          208 SHWPYLD----------------------------------------------------------TMTPNCLYGLNLTSL  229 (477)
T ss_dssp             ECCTTCC----------------------------------------------------------EECTTTTTTCCCSEE
T ss_pred             CCCcccc----------------------------------------------------------ccCcccccCccccEE
Confidence            5543210                                                          011111112245555


Q ss_pred             EcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC
Q 007962          386 DLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS  464 (583)
Q Consensus       386 ~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  464 (583)
                      ++++|.++.++. .+..+++|++|++++|.+.......|..+++|+.|++++|.+..+....|.++++|++|++++|.++
T Consensus       230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             ECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            555555555442 3445555555555555555544444555555555555555555554444555555555555555555


Q ss_pred             CCCCCCCCCCCccceEeccccccc
Q 007962          465 LPENPPFSSLPHLQELYLRRMQLR  488 (583)
Q Consensus       465 ~~~~~~~~~l~~L~~L~l~~~~l~  488 (583)
                      ......+..+++|++|++++|.+.
T Consensus       310 ~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          310 TLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             eeCHhHcCCCcccCEEEccCCCcc
Confidence            544444555555555555555444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=5.9e-30  Score=260.58  Aligned_cols=313  Identities=19%  Similarity=0.273  Sum_probs=232.5

Q ss_pred             cEEEcCCCcCCcCCcccccCCCCCEEEccccccCCC-CcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCc
Q 007962          117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (583)
Q Consensus       117 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  195 (583)
                      +.++++++.++.+|..+.  +++++|++++|.+..+ +..+..+++|++|++++|.+..+.+.+|.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            456667777777765443  5677777777777655 3456777777777777777777666667777777777777776


Q ss_pred             CCccch-hhcCCccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCccccccccc
Q 007962          196 LNGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA  272 (583)
Q Consensus       196 ~~~~~~-~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~  272 (583)
                      +..++. .+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++      
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------  165 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT------  165 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS------
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc------
Confidence            666554 345666666666666666644 34556666666666666666533 334555566666665555443      


Q ss_pred             ccccccEEECcCCCCCCCCh-hhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhh
Q 007962          273 CQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (583)
Q Consensus       273 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  351 (583)
                                      .++. .+.++++|+.|++++|.+..+...                                   
T Consensus       166 ----------------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-----------------------------------  194 (477)
T 2id5_A          166 ----------------SIPTEALSHLHGLIVLRLRHLNINAIRDY-----------------------------------  194 (477)
T ss_dssp             ----------------SCCHHHHTTCTTCCEEEEESCCCCEECTT-----------------------------------
T ss_pred             ----------------ccChhHhcccCCCcEEeCCCCcCcEeChh-----------------------------------
Confidence                            4333 377788899999888876543221                                   


Q ss_pred             hhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCC-cCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCc
Q 007962          352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS  430 (583)
Q Consensus       352 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~  430 (583)
                                             .+..+++|+.|++++|... .++.......+|++|++++|.++.++...+..+++|+
T Consensus       195 -----------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  251 (477)
T 2id5_A          195 -----------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR  251 (477)
T ss_dssp             -----------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred             -----------------------hcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccC
Confidence                                   2334678999999998644 4666555667999999999999999988899999999


Q ss_pred             EEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCc
Q 007962          431 CLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNS  509 (583)
Q Consensus       431 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~  509 (583)
                      .|++++|.++.++...|.++++|++|++++|.+....+.++..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred             eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence            999999999999888899999999999999999998888999999999999999999988765 4678999999999998


Q ss_pred             CC
Q 007962          510 LQ  511 (583)
Q Consensus       510 l~  511 (583)
                      +.
T Consensus       332 l~  333 (477)
T 2id5_A          332 LA  333 (477)
T ss_dssp             EE
T ss_pred             cc
Confidence            87

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=6e-30  Score=266.96  Aligned_cols=305  Identities=23%  Similarity=0.263  Sum_probs=212.9

Q ss_pred             CCCCCEEEccccccCCCCcc-cccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccccEEE
Q 007962          136 CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLD  213 (583)
Q Consensus       136 ~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~  213 (583)
                      +++++.++++++.+..+|.. +..+++|++|++++|.+..+....|..+++|+.|++++|.+..++. .++.+++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            45666666666666655543 4556666666666666666665556666666666666666655443 345566666666


Q ss_pred             ccCCcCcccCCC-CcCCCCCcEEEcCCCCCccCch-hhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC
Q 007962          214 LHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (583)
Q Consensus       214 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (583)
                      +++|.+..+|.. +..+++|+.|++++|.+..++. .++.+++|++|++++|.++.                      ++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----------------------~~  187 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----------------------VD  187 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB----------------------CC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC----------------------cC
Confidence            666666655443 3556666666666665554432 45555556655555554433                      21


Q ss_pred             hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc
Q 007962          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (583)
Q Consensus       292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (583)
                        ++.+++|+.+++++|.+..+                                                          
T Consensus       188 --~~~l~~L~~L~l~~n~l~~l----------------------------------------------------------  207 (597)
T 3oja_B          188 --LSLIPSLFHANVSYNLLSTL----------------------------------------------------------  207 (597)
T ss_dssp             --GGGCTTCSEEECCSSCCSEE----------------------------------------------------------
T ss_pred             --hhhhhhhhhhhcccCccccc----------------------------------------------------------
Confidence              34566777777777755322                                                          


Q ss_pred             CChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCC
Q 007962          372 IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIP  451 (583)
Q Consensus       372 ~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~  451 (583)
                           ...+.|+.|++++|.+..++..+  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.++....|..++
T Consensus       208 -----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          208 -----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             -----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             -----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence                 11346888999998887765433  36899999999988875  4468899999999999999888777788899


Q ss_pred             cccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCC
Q 007962          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN  531 (583)
Q Consensus       452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~  531 (583)
                      +|+.|++++|.++.. +..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.++.++  +..+++|++|++++|
T Consensus       279 ~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          279 RLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHN  355 (597)
T ss_dssp             SCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSS
T ss_pred             CCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCC
Confidence            999999999988765 33456688999999999988888888888899999999999888775  667888999999998


Q ss_pred             CCC
Q 007962          532 NIS  534 (583)
Q Consensus       532 ~l~  534 (583)
                      ++.
T Consensus       356 ~~~  358 (597)
T 3oja_B          356 DWD  358 (597)
T ss_dssp             CEE
T ss_pred             CCC
Confidence            776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=1.7e-29  Score=263.62  Aligned_cols=306  Identities=20%  Similarity=0.255  Sum_probs=233.0

Q ss_pred             ccCcccEEEcCCCcCCcCCcc-cccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhhcccccCcEE
Q 007962          112 SATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL  189 (583)
Q Consensus       112 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  189 (583)
                      .+.+++.++++++.+..+|.. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+..+++..|+.+++|+.|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            356788888888888877754 577888888888888888665 378888888888888888888888778888888888


Q ss_pred             EcCCCcCCccchh-hcCCccccEEEccCCcCcccC-CCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccc
Q 007962          190 IASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE  267 (583)
Q Consensus       190 ~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~  267 (583)
                      ++++|.+..+|.. ++.+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++  +..+++|+.+++++|.+..
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc
Confidence            8888888877765 477888888888888887664 45788888888888888888663  5567788888887776543


Q ss_pred             cccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhh
Q 007962          268 YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED  347 (583)
Q Consensus       268 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  347 (583)
                      +                          ...++|++|++++|.+..++..                               
T Consensus       207 l--------------------------~~~~~L~~L~ls~n~l~~~~~~-------------------------------  229 (597)
T 3oja_B          207 L--------------------------AIPIAVEELDASHNSINVVRGP-------------------------------  229 (597)
T ss_dssp             E--------------------------ECCTTCSEEECCSSCCCEEECS-------------------------------
T ss_pred             c--------------------------cCCchhheeeccCCcccccccc-------------------------------
Confidence            2                          1233566777776655332210                               


Q ss_pred             hhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCC
Q 007962          348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLS  427 (583)
Q Consensus       348 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~  427 (583)
                                                    ..++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+..|..++
T Consensus       230 ------------------------------~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  278 (597)
T 3oja_B          230 ------------------------------VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ  278 (597)
T ss_dssp             ------------------------------CCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred             ------------------------------cCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence                                          024688888888888774 4677888888888888888887777778888


Q ss_pred             CCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCC
Q 007962          428 SLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ  507 (583)
Q Consensus       428 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  507 (583)
                      +|+.|++++|.++.++.. +..+++|+.|++++|.+... +..+..+++|+.|++++|.++.++  +..+++|+.|++++
T Consensus       279 ~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~  354 (597)
T 3oja_B          279 RLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH  354 (597)
T ss_dssp             SCCEEECTTSCCCEEECS-SSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred             CCCEEECCCCCCCCCCcc-cccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence            888888888888887554 56688888888888888754 334567788888888888888764  56778888888888


Q ss_pred             CcCC
Q 007962          508 NSLQ  511 (583)
Q Consensus       508 n~l~  511 (583)
                      |.+.
T Consensus       355 N~~~  358 (597)
T 3oja_B          355 NDWD  358 (597)
T ss_dssp             SCEE
T ss_pred             CCCC
Confidence            8876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.4e-29  Score=240.44  Aligned_cols=280  Identities=21%  Similarity=0.294  Sum_probs=239.1

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAA   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~   86 (583)
                      +.+++++|++++++.+|..++               +++++|++++|.++.++. .|.++++|++|++++|.++.+ |..
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   95 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             CCCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence            367899999999999998663               479999999999998875 799999999999999999987 678


Q ss_pred             hhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccC---CCCcccccCCCC
Q 007962           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKM  162 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~l~~l~~L  162 (583)
                      |..+++|++|++++|.++.+|..+.  ++|++|++++|.+..++. .+..+++|++|++++|.+.   ..+..+..+++|
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A           96 FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred             hcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence            9999999999999999998887765  799999999999997764 5889999999999999886   345678899999


Q ss_pred             cEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCC
Q 007962          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN  240 (583)
Q Consensus       163 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  240 (583)
                      ++|++++|.+..++...+   ++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|
T Consensus       174 ~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          174 SYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             CEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred             CEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence            999999999998776432   7899999999999776 5678899999999999999987654 7889999999999999


Q ss_pred             CCccCchhhhCCCCCCEEEccCCccccccccccc--------ccccEEECcCCCCCC---CChhhcccCCCcEEecCCC
Q 007962          241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGN  308 (583)
Q Consensus       241 ~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--------~~L~~L~l~~~~~~~---~~~~~~~~~~L~~L~l~~~  308 (583)
                      .+..+|..+..+++|++|++++|.++.++...+.        ..++.+++++|.+..   .+..+..+.+++.+++++|
T Consensus       251 ~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          251 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            9999999999999999999999999987765542        347889999988764   3345777888999998876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=4.6e-28  Score=233.95  Aligned_cols=288  Identities=24%  Similarity=0.312  Sum_probs=181.0

Q ss_pred             ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEcc
Q 007962          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH  261 (583)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~  261 (583)
                      .+++.++++++.++.+|..+.  ++++.|++++|.+..++. .+..+++|++|++++|.+..+ |..++.+++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            357777777777777765443  577888888888776654 577788888888888888766 6678888888888888


Q ss_pred             CCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcc
Q 007962          262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE  340 (583)
Q Consensus       262 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  340 (583)
                      +|.++.++...+ .+|++|++++|.+..++.. +.++++|+++++++|.+...+                          
T Consensus       109 ~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------  161 (330)
T 1xku_A          109 KNQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG--------------------------  161 (330)
T ss_dssp             SSCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG--------------------------
T ss_pred             CCcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC--------------------------
Confidence            887776654433 4566666666665554432 555666666666655442110                          


Q ss_pred             cccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh
Q 007962          341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD  420 (583)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~  420 (583)
                                                                           ..+..+..+++|++|++++|.++.++.
T Consensus       162 -----------------------------------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~  188 (330)
T 1xku_A          162 -----------------------------------------------------IENGAFQGMKKLSYIRIADTNITTIPQ  188 (330)
T ss_dssp             -----------------------------------------------------BCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             -----------------------------------------------------cChhhccCCCCcCEEECCCCccccCCc
Confidence                                                                 112233444444455554444444333


Q ss_pred             hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcc
Q 007962          421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL  500 (583)
Q Consensus       421 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L  500 (583)
                      ..   .++|++|++++|.++++....|.++++|++|++++|.++...+..+..+++|++|++++|.++.+|..+..+++|
T Consensus       189 ~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  265 (330)
T 1xku_A          189 GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  265 (330)
T ss_dssp             SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             cc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence            21   245666666666665555555666666666666666665555555666677777777777777777667777777


Q ss_pred             cEEeCCCCcCCccchh-hc------CCCCCCEEeCCCCCCC--cCCCCccccccccceeeccCCC
Q 007962          501 RILDLSQNSLQSIPEG-FK------NLTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP  556 (583)
Q Consensus       501 ~~L~l~~n~l~~l~~~-l~------~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~  556 (583)
                      ++|++++|.++.++.. +.      ..+.|+.|++++|++.  .+++..+..+.+++.+++++|+
T Consensus       266 ~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          266 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            7777777777765432 21      2467888888888776  3666666666888888888774

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=8e-29  Score=239.36  Aligned_cols=278  Identities=27%  Similarity=0.365  Sum_probs=223.9

Q ss_pred             hhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhh
Q 007962           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI   87 (583)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~   87 (583)
                      .++.++|++++++.+|..++               +++++|++++|.++.++ ..|.++++|++|++++|.++.+ +.+|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   98 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS---------------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF   98 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred             cCCEEECCCCCccccCCCCC---------------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence            57888999998888888663               46899999999998875 4788999999999999988877 5688


Q ss_pred             hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccC---CCCcccccCCCCc
Q 007962           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~l~~l~~L~  163 (583)
                      ..+++|++|++++|.++.+|..+.  ++|++|++++|.+..++. .+..+++|++|++++|.+.   ..+..+..+ +|+
T Consensus        99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            899999999999998888887665  789999999999887765 5788999999999998886   334556666 899


Q ss_pred             EEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCC
Q 007962          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNA  241 (583)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~  241 (583)
                      +|++++|.+..++....   ++|++|++++|.+..++ ..+..+++|+.|++++|.+..++. .+..+++|+.|++++|.
T Consensus       176 ~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence            99999998888765422   68899999999887765 567888899999999998887654 68888999999999999


Q ss_pred             CccCchhhhCCCCCCEEEccCCccccccccccc--------ccccEEECcCCCCC--C-CChhhcccCCCcEEecCCC
Q 007962          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS--G-LPPEIGKMTTLRKLLLTGN  308 (583)
Q Consensus       242 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~--------~~L~~L~l~~~~~~--~-~~~~~~~~~~L~~L~l~~~  308 (583)
                      +..+|..+..+++|++|++++|.++.++...+.        ..++.+++.+|.+.  . .+..+..+++|+.+++++|
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            998888888899999999999988877654432        34788899888776  3 3445777888888888876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=3.5e-28  Score=234.88  Aligned_cols=287  Identities=23%  Similarity=0.300  Sum_probs=191.0

Q ss_pred             ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccC-CCCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEcc
Q 007962          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH  261 (583)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~  261 (583)
                      .+++.++++++.+..+|..+.  ++++.|++++|.+..++ ..+..+++|++|++++|.+..+ +..++.+++|++|+++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            367778888877777776553  67888888888887663 4678888888888888888855 5678888888888888


Q ss_pred             CCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcc
Q 007962          262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE  340 (583)
Q Consensus       262 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  340 (583)
                      +|.++.++.... .+|++|++++|.+..++.. +.++++|++|++++|.+...+                          
T Consensus       111 ~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------  163 (332)
T 2ft3_A          111 KNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG--------------------------  163 (332)
T ss_dssp             SSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG--------------------------
T ss_pred             CCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC--------------------------
Confidence            887776655443 4566666666665554433 555556666665555442110                          


Q ss_pred             cccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCCh
Q 007962          341 ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD  420 (583)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~  420 (583)
                                                                           ..+..+..+ +|++|++++|.++.++.
T Consensus       164 -----------------------------------------------------~~~~~~~~l-~L~~L~l~~n~l~~l~~  189 (332)
T 2ft3_A          164 -----------------------------------------------------FEPGAFDGL-KLNYLRISEAKLTGIPK  189 (332)
T ss_dssp             -----------------------------------------------------SCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred             -----------------------------------------------------CCcccccCC-ccCEEECcCCCCCccCc
Confidence                                                                 112223333 55555555555555443


Q ss_pred             hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcc
Q 007962          421 AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL  500 (583)
Q Consensus       421 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L  500 (583)
                      ..   .++|++|++++|.++.+....|.++++|++|++++|.+....+..+..+++|++|++++|.++.+|..+..+++|
T Consensus       190 ~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  266 (332)
T 2ft3_A          190 DL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL  266 (332)
T ss_dssp             SS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred             cc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence            21   256666666666666666556677777777777777777666666777778888888888888777777788888


Q ss_pred             cEEeCCCCcCCccchh-hcC------CCCCCEEeCCCCCCC--cCCCCccccccccceeeccCCC
Q 007962          501 RILDLSQNSLQSIPEG-FKN------LTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP  556 (583)
Q Consensus       501 ~~L~l~~n~l~~l~~~-l~~------~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~~~  556 (583)
                      ++|++++|.++.++.. +..      .++|+.|++++|++.  .+++..+..+++|+.+++++|+
T Consensus       267 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            8888888888766432 322      467888888888777  6666666667888888888874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.5e-30  Score=264.14  Aligned_cols=290  Identities=18%  Similarity=0.210  Sum_probs=204.4

Q ss_pred             hhhceeeccCCcCCCCChhh-hhcccccCCCCCcccccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCcc
Q 007962            9 RTSGSLNLSNRSLRDVPNEV-YKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE   82 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~~   82 (583)
                      +.++++|++++++++.+... +.            .+++|++|++++|.++     .++..+..+++|++|++++|.+..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~------------~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLP------------LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHH------------HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             ccceehhhhhcccCchhHHHHHh------------hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            45788999999888665332 22            2678999999999888     456778889999999999998874


Q ss_pred             c--chhhhCCC----CccEEEccCCccc-----cCCccccccCcccEEEcCCCcCCcC-Ccc-----cccCCCCCEEEcc
Q 007962           83 L--PAAIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-PSS-----LGRCLNLSDFKAS  145 (583)
Q Consensus        83 l--~~~~~~~~----~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~~-~~~-----~~~~~~L~~L~l~  145 (583)
                      .  ...+..++    +|++|++++|.++     .++..+..+++|++|++++|.+... +..     ....++|++|+++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            2  22334455    6999999999887     3567788899999999999987632 121     2235679999999


Q ss_pred             ccccCC-----CCcccccCCCCcEEEecCCcceeechhhhc-----ccccCcEEEcCCCcCCc-----cchhhcCCcccc
Q 007962          146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI  210 (583)
Q Consensus       146 ~~~~~~-----l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~  210 (583)
                      +|.+..     ++..+..+++|++|++++|.+.......+.     ..++|++|++++|.+..     ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            998773     455677789999999999887765444333     25589999999998865     466677788999


Q ss_pred             EEEccCCcCccc------CCCCcCCCCCcEEEcCCCCCcc-----CchhhhCCCCCCEEEccCCccccccccccc-----
Q 007962          211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEACQ-----  274 (583)
Q Consensus       211 ~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-----  274 (583)
                      +|++++|.+...      +..+..+++|++|++++|.+..     ++..+..+++|++|++++|.+.+.......     
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  310 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE  310 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence            999999877632      2223457889999999888885     566777788899999888877643322111     


Q ss_pred             --ccccEEECcCCCCCC-----CChhhcccCCCcEEecCCCcc
Q 007962          275 --LRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPL  310 (583)
Q Consensus       275 --~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~  310 (583)
                        .+|++|++++|.+..     ++..+..+++|++|++++|.+
T Consensus       311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  353 (461)
T 1z7x_W          311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL  353 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcc
Confidence              245666666665544     223344455555555555544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=1.1e-30  Score=265.12  Aligned_cols=301  Identities=21%  Similarity=0.198  Sum_probs=200.4

Q ss_pred             CCcEEEcCCCCCc-----cCchhhhCCCCCCEEEccCCcccccccccc-------cccccEEECcCCCCCC-----CChh
Q 007962          231 SLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEAC-------QLRLSVLDLSNNSLSG-----LPPE  293 (583)
Q Consensus       231 ~L~~L~l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~-------~~~L~~L~l~~~~~~~-----~~~~  293 (583)
                      +|++|++++|.+.     .++..+..+++|++|++++|.+.+......       ..+|++|++++|.+..     ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            4555555555544     224445555566666666555543221111       1136666666665554     3345


Q ss_pred             hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc--
Q 007962          294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA--  371 (583)
Q Consensus       294 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--  371 (583)
                      +..+++|++|++++|.+...+..                              ..........++++.+++++|.+..  
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~------------------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~  215 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVR------------------------------VLCQGLKDSPCQLEALKLESCGVTSDN  215 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHH------------------------------HHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred             HhhCCCCCEEECcCCCcchHHHH------------------------------HHHHHHhcCCCCceEEEccCCCCcHHH
Confidence            66678888888888865322110                              0011111123478888888888775  


Q ss_pred             ---CChhhhccCCccEEEcCCCCCCcC------CccccCCCCCcEEEccCCCCCCC----ChhhhhcCCCCcEEecCCCC
Q 007962          372 ---IPSEIWEAGEITKLDLSRNSIQEL------PPELSSCASLQTLILSRNKIKDW----PDAILTSLSSLSCLKLDNNP  438 (583)
Q Consensus       372 ---~~~~~~~~~~L~~L~l~~~~l~~l------~~~l~~~~~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~  438 (583)
                         ++..+..+++|++|++++|.+++.      +.....+++|++|++++|.+++.    ....+..+++|++|++++|.
T Consensus       216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence               456677789999999999988762      22234689999999999998874    23456779999999999999


Q ss_pred             CccCCCCcc-----CCCCcccEEeCCCCccCCCC----CCCCCCCCccceEeccccccccc-ccchhc-----cCcccEE
Q 007962          439 LRQVPSDGF-----KDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLREA-PTDILR-----LQQLRIL  503 (583)
Q Consensus       439 ~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~-----~~~L~~L  503 (583)
                      +++.....+     ...++|++|++++|.++...    +..+..+++|++|++++|.++.. +..+..     .++|++|
T Consensus       296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence            875432222     23479999999999987653    23345679999999999988843 222222     6799999


Q ss_pred             eCCCCcCC-----ccchhhcCCCCCCEEeCCCCCCCcCCC-----CccccccccceeeccCCCCccch
Q 007962          504 DLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISALPP-----ELGLLEPSLQALRLDGNPLRSIR  561 (583)
Q Consensus       504 ~l~~n~l~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~  561 (583)
                      ++++|.++     .+|..+..+++|++|++++|+++....     .+.....+|+.|++.++.+....
T Consensus       376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence            99999998     578888899999999999999884211     11111247999999998876443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.7e-29  Score=265.00  Aligned_cols=416  Identities=13%  Similarity=0.078  Sum_probs=241.0

Q ss_pred             hHhhCCCCCCcEEEcCCCCCc----cc------------chhhhCCCCccEEEccCCccc-cCCccccc-cCc-ccEEEc
Q 007962           61 KEDLRNLPLLTVLNVSHNKLS----EL------------PAAIGELHMLKSLDVSFNSIM-KIPDEIGS-ATA-LVKFDC  121 (583)
Q Consensus        61 ~~~~~~~~~L~~L~L~~~~l~----~l------------~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~-l~~-L~~L~l  121 (583)
                      +..+..+++|++|+++++...    .+            +.....+++|++|+|++|.++ ..+..+.. +++ |++|++
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L  145 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL  145 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence            345677888888888775421    11            112336788888888888665 22333444 334 888888


Q ss_pred             CCCcC-C--cCCcccccCCCCCEEEccccccCC-----CCcccccCCCCcEEEecCCcceeech----hhhcccccCcEE
Q 007962          122 SSNQL-K--ELPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSN----NLIASWTMLTEL  189 (583)
Q Consensus       122 ~~~~~-~--~~~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L  189 (583)
                      ++|.. .  .++.....+++|++|++++|.+..     ++..+..+++|++|+++++.+..+..    ..+..+++|+.|
T Consensus       146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L  225 (592)
T 3ogk_B          146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV  225 (592)
T ss_dssp             ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred             cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence            87762 2  222334577888888888887653     22345667888888888877763322    224567788888


Q ss_pred             EcCCCcCCccchhhcCCccccEEEccCCcCc----ccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcc
Q 007962          190 IASKNLLNGMPETIGSLSRLIRLDLHQNRIL----SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL  265 (583)
Q Consensus       190 ~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l  265 (583)
                      ++++|.+..++..+..+++|+.|+++.+...    ..+..+..+++|+.+.++++....++..+..+++|++|++++|.+
T Consensus       226 ~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          226 KVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             ECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             eccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            8888877777777777788888888753222    233455666777777777765556666666677777777776664


Q ss_pred             cccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccch
Q 007962          266 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK  345 (583)
Q Consensus       266 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  345 (583)
                      +...                    +...+..+++|++|++.++ +...                                
T Consensus       306 ~~~~--------------------~~~~~~~~~~L~~L~L~~~-~~~~--------------------------------  332 (592)
T 3ogk_B          306 ETED--------------------HCTLIQKCPNLEVLETRNV-IGDR--------------------------------  332 (592)
T ss_dssp             CHHH--------------------HHHHHTTCTTCCEEEEEGG-GHHH--------------------------------
T ss_pred             CHHH--------------------HHHHHHhCcCCCEEeccCc-cCHH--------------------------------
Confidence            3211                    1122456677777776622 1100                                


Q ss_pred             hhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCC----------C-CCCc--CCccccCCCCCcEEEccC
Q 007962          346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR----------N-SIQE--LPPELSSCASLQTLILSR  412 (583)
Q Consensus       346 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~l~~--l~~~l~~~~~L~~L~l~~  412 (583)
                                               .++.....+++|++|++++          | .+++  +......+++|++|+++.
T Consensus       333 -------------------------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  387 (592)
T 3ogk_B          333 -------------------------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV  387 (592)
T ss_dssp             -------------------------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred             -------------------------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence                                     0011112345566666662          2 3332  222234466677777766


Q ss_pred             CCCCCCChhhhhc-CCCCcEEecC----CCCCccCCCC-----ccCCCCcccEEeCCCCc--cCCCCCCCC-CCCCccce
Q 007962          413 NKIKDWPDAILTS-LSSLSCLKLD----NNPLRQVPSD-----GFKDIPMLQILDLSYNI--ASLPENPPF-SSLPHLQE  479 (583)
Q Consensus       413 ~~l~~~~~~~l~~-l~~L~~L~l~----~~~~~~~~~~-----~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~  479 (583)
                      +.+++.....+.. +++|+.|+++    .+.+++.+..     .+.++++|++|+++.|.  +++.....+ ..+++|++
T Consensus       388 ~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~  467 (592)
T 3ogk_B          388 SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW  467 (592)
T ss_dssp             SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE
T ss_pred             CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE
Confidence            6665544333333 6677777775    3344433211     14456777777775433  332221112 23677777


Q ss_pred             Eecccccccc--cccchhccCcccEEeCCCCcCC--ccchhhcCCCCCCEEeCCCCCCCcCCC-CccccccccceeeccC
Q 007962          480 LYLRRMQLRE--APTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPP-ELGLLEPSLQALRLDG  554 (583)
Q Consensus       480 L~l~~~~l~~--~~~~~~~~~~L~~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~  554 (583)
                      |++++|.++.  ++..+..+++|++|++++|.++  .++..+..+++|++|++++|+++.... .+...+|.+....+..
T Consensus       468 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             EEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             eeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            7777777663  3444556777888888888766  244555677788888888887764322 2222235555444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=5.5e-26  Score=234.26  Aligned_cols=259  Identities=30%  Similarity=0.369  Sum_probs=230.9

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~   88 (583)
                      ..+++++|++++++++|..++               ++|++|++++|.++.+|.   .+++|++|+|++|.++.+|.   
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---   98 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---   98 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---
T ss_pred             CCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---
Confidence            357899999999999998764               479999999999999886   67999999999999999987   


Q ss_pred             CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  168 (583)
                      .+++|++|++++|.++.+|.   .+++|++|++++|+++.+|..   +++|++|++++|.+..++.   .+++|+.|+++
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~  169 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAY  169 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred             CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence            78999999999999998887   678999999999999998864   4899999999999998875   35789999999


Q ss_pred             CCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchh
Q 007962          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (583)
Q Consensus       169 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~  248 (583)
                      +|.+..++    ..+++|+.|++++|.+..++..   .++|+.|++++|.+..+|..   +++|+.|++++|.++.+|  
T Consensus       170 ~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--  237 (622)
T 3g06_A          170 NNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--  237 (622)
T ss_dssp             SSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--
T ss_pred             CCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--
Confidence            99999887    4568999999999999988753   47899999999999988753   488999999999999887  


Q ss_pred             hhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCcccc
Q 007962          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (583)
Q Consensus       249 l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  312 (583)
                       ..+++|+.|++++|.++.++.  ...+|+.|++++|.+..+|..+.++++|+.|++++|++..
T Consensus       238 -~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          238 -VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             -CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             -CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence             556899999999999998877  5567999999999999999999999999999999998754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.6e-26  Score=219.19  Aligned_cols=241  Identities=23%  Similarity=0.274  Sum_probs=188.8

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc---chh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL---PAA   86 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l---~~~   86 (583)
                      -+.++|++++++++|..++               +++++|++++|.++.++. .|+++++|++|++++|.+..+   +..
T Consensus         9 ~~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   73 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS   73 (306)
T ss_dssp             TTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred             CCEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence            4678999999999998764               479999999999999886 479999999999999998855   567


Q ss_pred             hhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCc--ccccCCCCCEEEccccccCC-CCcccccCCCCc
Q 007962           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITS-LPEDLADCSKMS  163 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~-l~~~l~~l~~L~  163 (583)
                      +..+++|++|++++|.++.+|..+..+++|++|++++|.+..++.  .+..+++|++|++++|.+.. .+..+..+++|+
T Consensus        74 ~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  153 (306)
T 2z66_A           74 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  153 (306)
T ss_dssp             HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCC
T ss_pred             cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCC
Confidence            788999999999999998888888999999999999999887763  67888888888888888774 345577788888


Q ss_pred             EEEecCCccee-echhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCC
Q 007962          164 KLDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN  240 (583)
Q Consensus       164 ~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  240 (583)
                      +|++++|.+.. ..+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..++. .+..+++|+.|++++|
T Consensus       154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred             EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence            88888888765 3344477777888888888877665 4566777777777777777776543 4666777777777777


Q ss_pred             CCccC-chhhhCCC-CCCEEEccCCccc
Q 007962          241 ALSAL-PAELGKLS-KLGTLDLHSNQLK  266 (583)
Q Consensus       241 ~~~~l-~~~l~~~~-~L~~L~l~~~~l~  266 (583)
                      .+... +..+..++ +|++|++++|.+.
T Consensus       234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          234 HIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCcccCHHHHHhhhccCCEEEccCCCee
Confidence            77643 44566663 6777777777655

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.4e-26  Score=225.77  Aligned_cols=266  Identities=21%  Similarity=0.292  Sum_probs=209.9

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccc-hh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AA   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~-~~   86 (583)
                      +....+|+++++++++|..++               ++|++|++++|.++.++. .|.++++|++|++++|.++.++ .+
T Consensus        31 ~~~~~c~~~~~~l~~iP~~~~---------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (353)
T 2z80_A           31 DRNGICKGSSGSLNSIPSGLT---------------EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS   95 (353)
T ss_dssp             CTTSEEECCSTTCSSCCTTCC---------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             CCCeEeeCCCCCccccccccc---------------ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence            445678999999999998774               479999999999998875 7999999999999999998774 57


Q ss_pred             hhCCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCcCCc--ccccCCCCCEEEcccc-ccCCC-CcccccCCC
Q 007962           87 IGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNN-CITSL-PEDLADCSK  161 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~l-~~~l~~l~~  161 (583)
                      |.++++|++|++++|.++.++.. +.++++|++|++++|+++.++.  .+..+++|++|++++| .+..+ +..+..+++
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            99999999999999999988776 7889999999999999998876  6888999999999998 46655 456888999


Q ss_pred             CcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh-cCCccccEEEccCCcCcccCC----CCcCCCCCcEEE
Q 007962          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFY  236 (583)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~  236 (583)
                      |++|++++|.+..+....+..+++|++|++++|.+..++..+ ..+++|+.|++++|.+..++.    .......++.++
T Consensus       176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred             CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence            999999999998887777889999999999999888776543 447889999999988875432    123345566666


Q ss_pred             cCCCCCc-----cCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCcc
Q 007962          237 MGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPL  310 (583)
Q Consensus       237 l~~~~~~-----~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~  310 (583)
                      ++++.+.     .+|..+..+++|++|++++|.++.                      ++.. +.++++|+++++++|++
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~----------------------i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS----------------------VPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC----------------------CCTTTTTTCTTCCEEECCSSCB
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCCc----------------------cCHHHHhcCCCCCEEEeeCCCc
Confidence            6666555     345556666677766666665543                      4444 46777888888888876


Q ss_pred             c
Q 007962          311 R  311 (583)
Q Consensus       311 ~  311 (583)
                      .
T Consensus       314 ~  314 (353)
T 2z80_A          314 D  314 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=5.4e-25  Score=226.88  Aligned_cols=260  Identities=26%  Similarity=0.279  Sum_probs=182.3

Q ss_pred             ccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCC
Q 007962          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (583)
Q Consensus       184 ~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~  263 (583)
                      .+++.|+++++.++.+|..+.  ++|+.|++++|.+..+|.   .+++|++|++++|.++.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            357788888888877776554  678888888887777765   45777778887777777665   5677777777777


Q ss_pred             cccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCccccc
Q 007962          264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (583)
Q Consensus       264 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  343 (583)
                      .++.++.  ...+|+.|++++|.+..++..   +++|++|++++|.+..                               
T Consensus       112 ~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-------------------------------  155 (622)
T 3g06_A          112 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-------------------------------  155 (622)
T ss_dssp             CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-------------------------------
T ss_pred             cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-------------------------------
Confidence            7776655  344566666666666665543   2556666666655432                               


Q ss_pred             chhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhh
Q 007962          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIL  423 (583)
Q Consensus       344 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l  423 (583)
                                                  ++.   ...+|+.|++++|.++.+|   ..+++|+.|++++|.++.++.   
T Consensus       156 ----------------------------l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~---  198 (622)
T 3g06_A          156 ----------------------------LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPT---  198 (622)
T ss_dssp             ----------------------------CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---
T ss_pred             ----------------------------cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCC---
Confidence                                        221   1346778888888877776   346778888888887776553   


Q ss_pred             hcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEE
Q 007962          424 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL  503 (583)
Q Consensus       424 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L  503 (583)
                       ..++|+.|++++|.++.++..    +++|+.|++++|.++.+.    ..+++|+.|++++|.++.+|.   .+++|++|
T Consensus       199 -~~~~L~~L~L~~N~l~~l~~~----~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L  266 (622)
T 3g06_A          199 -LPSELYKLWAYNNRLTSLPAL----PSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSL  266 (622)
T ss_dssp             -CCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEE
T ss_pred             -ccchhhEEECcCCcccccCCC----CCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEE
Confidence             346788888888887776542    477888888888777643    455778888888888877766   56778888


Q ss_pred             eCCCCcCCccchhhcCCCCCCEEeCCCCCCCcC
Q 007962          504 DLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL  536 (583)
Q Consensus       504 ~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~  536 (583)
                      ++++|.++.+|..+.++++|+.|++++|+++..
T Consensus       267 ~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          267 SVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             ECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             eCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence            888888887777777788888888888877743

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=1e-26  Score=221.90  Aligned_cols=241  Identities=26%  Similarity=0.339  Sum_probs=214.1

Q ss_pred             cCccEEEcCCCcch---hhhHhhCCCCCCcEEEcCC-CCCc-ccchhhhCCCCccEEEccCCccc-cCCccccccCcccE
Q 007962           45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK  118 (583)
Q Consensus        45 ~~L~~L~ls~~~i~---~l~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~  118 (583)
                      .+++.|+++++.++   .+|..|.++++|++|++++ +.+. .+|..|..+++|++|++++|.++ .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            47999999999998   5788999999999999995 7777 67889999999999999999998 78889999999999


Q ss_pred             EEcCCCcCC-cCCcccccCCCCCEEEccccccC-CCCcccccCC-CCcEEEecCCcceeechhhhcccccCcEEEcCCCc
Q 007962          119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (583)
Q Consensus       119 L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~l~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  195 (583)
                      |++++|.+. .+|..+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+....+..+..++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998 77889999999999999999998 7888999998 999999999999966666688887 9999999999


Q ss_pred             CC-ccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc-cCchhhhCCCCCCEEEccCCccc-cccccc
Q 007962          196 LN-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA  272 (583)
Q Consensus       196 ~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~  272 (583)
                      +. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .++...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            86 4667788999999999999999866666888999999999999999 78889999999999999999988 455554


Q ss_pred             ccccccEEECcCCC
Q 007962          273 CQLRLSVLDLSNNS  286 (583)
Q Consensus       273 ~~~~L~~L~l~~~~  286 (583)
                      ...+++.+++++|.
T Consensus       289 ~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          289 NLQRFDVSAYANNK  302 (313)
T ss_dssp             TGGGSCGGGTCSSS
T ss_pred             cccccChHHhcCCC
Confidence            44568888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2.6e-28  Score=255.98  Aligned_cols=409  Identities=14%  Similarity=0.075  Sum_probs=265.4

Q ss_pred             ccCccEEEcCCCcch----------------hhhHhhCCCCCCcEEEcCCCCCccc-chhhhC-CCC-ccEEEccCCc-c
Q 007962           44 AVDLQKLILAHNNIE----------------KLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGE-LHM-LKSLDVSFNS-I  103 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~----------------~l~~~~~~~~~L~~L~L~~~~l~~l-~~~~~~-~~~-L~~L~L~~~~-l  103 (583)
                      +++|+.|+++++.-.                .++..+.++++|++|+|++|.++.. +..+.. ++. |++|++++|. +
T Consensus        72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~  151 (592)
T 3ogk_B           72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF  151 (592)
T ss_dssp             CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred             CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence            677999999775321                1223345889999999999987632 334444 444 9999999986 3


Q ss_pred             c--cCCccccccCcccEEEcCCCcCCcC-----CcccccCCCCCEEEccccccC-----CCCcccccCCCCcEEEecCCc
Q 007962          104 M--KIPDEIGSATALVKFDCSSNQLKEL-----PSSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNK  171 (583)
Q Consensus       104 ~--~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l~~L~~L~l~~~~  171 (583)
                      +  .++.....+++|++|++++|.+...     +.....+++|++|+++++.+.     .++..+..+++|++|++++|.
T Consensus       152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            2  3334455789999999999987533     234568899999999999886     334456789999999999998


Q ss_pred             ceeechhhhcccccCcEEEcCCCcC----CccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc--cC
Q 007962          172 LTVLSNNLIASWTMLTELIASKNLL----NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS--AL  245 (583)
Q Consensus       172 i~~~~~~~~~~~~~L~~L~l~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l  245 (583)
                      +..+. ..+..+++|++|+++....    ......+..+++|+.++++++....++..+..+++|++|++++|.+.  .+
T Consensus       232 ~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~  310 (592)
T 3ogk_B          232 ILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH  310 (592)
T ss_dssp             GGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH
T ss_pred             HHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH
Confidence            88866 4488899999999986422    12344667788999999998766677888889999999999999876  33


Q ss_pred             chhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCC----------C-cccccc
Q 007962          246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG----------N-PLRTLR  314 (583)
Q Consensus       246 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~----------~-~~~~~~  314 (583)
                      ...+..+++|++|++.+ .+.+..                    ++.....+++|++|++++          + .+... 
T Consensus       311 ~~~~~~~~~L~~L~L~~-~~~~~~--------------------l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-  368 (592)
T 3ogk_B          311 CTLIQKCPNLEVLETRN-VIGDRG--------------------LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-  368 (592)
T ss_dssp             HHHHTTCTTCCEEEEEG-GGHHHH--------------------HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-
T ss_pred             HHHHHhCcCCCEEeccC-ccCHHH--------------------HHHHHHhCCCCCEEEeecCccccccccccCccCHH-
Confidence            34568899999999983 322211                    112234566677777762          1 11000 


Q ss_pred             ccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc
Q 007962          315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE  394 (583)
Q Consensus       315 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  394 (583)
                                                                              .+......+++|++|+++.+.+++
T Consensus       369 --------------------------------------------------------~~~~l~~~~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          369 --------------------------------------------------------GLIALAQGCQELEYMAVYVSDITN  392 (592)
T ss_dssp             --------------------------------------------------------HHHHHHHHCTTCSEEEEEESCCCH
T ss_pred             --------------------------------------------------------HHHHHHhhCccCeEEEeecCCccH
Confidence                                                                    001112235566666665555544


Q ss_pred             -CCcccc-CCCCCcEEEcc----CCCCCCCC-----hhhhhcCCCCcEEecCCCC--CccCCCCcc-CCCCcccEEeCCC
Q 007962          395 -LPPELS-SCASLQTLILS----RNKIKDWP-----DAILTSLSSLSCLKLDNNP--LRQVPSDGF-KDIPMLQILDLSY  460 (583)
Q Consensus       395 -l~~~l~-~~~~L~~L~l~----~~~l~~~~-----~~~l~~l~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~  460 (583)
                       .+..+. .+++|+.|+++    .+.+++.+     ...+..+++|++|+++.|.  +++.....+ ..+++|++|++++
T Consensus       393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~  472 (592)
T 3ogk_B          393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY  472 (592)
T ss_dssp             HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred             HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence             122232 26667777775    34555431     2234567777777776543  332211112 3367777777777


Q ss_pred             CccCCCCC-CCCCCCCccceEecccccccc--cccchhccCcccEEeCCCCcCCc--cchhhcCCCCCCEEeCCCC
Q 007962          461 NIASLPEN-PPFSSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDN  531 (583)
Q Consensus       461 ~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~n~l~~--l~~~l~~~~~L~~L~l~~~  531 (583)
                      |.+++... ..+..+++|++|++++|.++.  ++..+..+++|+.|++++|.++.  +......++.+....+..+
T Consensus       473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            77654322 123567888888888887662  34445567888888888888763  2223346676666655554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=4.1e-26  Score=218.96  Aligned_cols=222  Identities=21%  Similarity=0.274  Sum_probs=188.5

Q ss_pred             cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCC
Q 007962           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~  124 (583)
                      .+++.|+++++.++.+|..+.++++|++|++++|.+..+|..+..+++|++|++++|.++.+|..+.++++|++|++++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            67889999999999888888889999999999998888888888899999999999988888888889999999999986


Q ss_pred             cC-CcCCcccc---------cCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCC
Q 007962          125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (583)
Q Consensus       125 ~~-~~~~~~~~---------~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~  194 (583)
                      .. ..+|..+.         .+++|++|++++|.+..+|..+..+++|++|++++|.+..++.. +..+++|++|++++|
T Consensus       161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC  239 (328)
T ss_dssp             TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred             CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence            54 46665554         48999999999999888888899999999999999998887765 888899999999997


Q ss_pred             cC-CccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEEcCCCCCc-cCchhhhCCCCCCEEEccCCcccc
Q 007962          195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE  267 (583)
Q Consensus       195 ~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~  267 (583)
                      .+ ..+|..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..++.+++|+.+++..+.+..
T Consensus       240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            76 467778888899999999997655 67878889999999999997766 788899999999999888765543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=3.1e-26  Score=219.77  Aligned_cols=224  Identities=21%  Similarity=0.316  Sum_probs=202.9

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~   88 (583)
                      +.++++++++++++.+|..+..             +++|++|++++|.++.+|..++++++|++|++++|.+..+|..+.
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~  147 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA  147 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred             cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence            7899999999999999987653             689999999999999999999999999999999999999999999


Q ss_pred             CCCCccEEEccCCcc-ccCCccccc---------cCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCccccc
Q 007962           89 ELHMLKSLDVSFNSI-MKIPDEIGS---------ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD  158 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l-~~l~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~  158 (583)
                      .+++|++|++++|.+ ..+|..+..         +++|++|++++|.++.+|..+..+++|++|++++|.+..++..+..
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            999999999999755 477776654         9999999999999999999999999999999999999999999999


Q ss_pred             CCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcC-CccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEE
Q 007962          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY  236 (583)
Q Consensus       159 l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~  236 (583)
                      +++|++|++++|.+....+..+..+++|+.|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|+.+.
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            99999999999988876666799999999999999876 568888999999999999998765 7899999999999999


Q ss_pred             cCCCCCccC
Q 007962          237 MGNNALSAL  245 (583)
Q Consensus       237 l~~~~~~~l  245 (583)
                      +..+.+..+
T Consensus       308 l~~~~~~~l  316 (328)
T 4fcg_A          308 VPPHLQAQL  316 (328)
T ss_dssp             CCGGGSCC-
T ss_pred             CCHHHHHHH
Confidence            987765543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=3e-26  Score=218.65  Aligned_cols=242  Identities=21%  Similarity=0.303  Sum_probs=208.0

Q ss_pred             CCCcEEEcCCCCCc---ccchhhhCCCCccEEEccC-Cccc-cCCccccccCcccEEEcCCCcCC-cCCcccccCCCCCE
Q 007962           68 PLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVSF-NSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSD  141 (583)
Q Consensus        68 ~~L~~L~L~~~~l~---~l~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L~~  141 (583)
                      .++++|+++++.+.   .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.++ .+|..+..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            58999999999998   4788999999999999995 7776 78889999999999999999998 78888999999999


Q ss_pred             EEccccccC-CCCcccccCCCCcEEEecCCcceeechhhhcccc-cCcEEEcCCCcCC-ccchhhcCCccccEEEccCCc
Q 007962          142 FKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNR  218 (583)
Q Consensus       142 L~l~~~~~~-~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~  218 (583)
                      |++++|.+. .+|..+..+++|++|++++|.+....+..+..++ .|+.|++++|.+. .+|..+..+. |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999998 7888899999999999999999855455588887 9999999999996 6777888776 9999999998


Q ss_pred             Cc-ccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccc-ccccccc-cccccEEECcCCCCCCCChhhc
Q 007962          219 IL-SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK-EYCVEAC-QLRLSVLDLSNNSLSGLPPEIG  295 (583)
Q Consensus       219 ~~-~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~-~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~  295 (583)
                      +. ..+..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .++.... ..+|++|++++|.+.+..+...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            88 4567788999999999999999966666888999999999999998 4444333 3459999999999986334448


Q ss_pred             ccCCCcEEecCCCcc
Q 007962          296 KMTTLRKLLLTGNPL  310 (583)
Q Consensus       296 ~~~~L~~L~l~~~~~  310 (583)
                      ++++|+.+++.+|+.
T Consensus       289 ~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          289 NLQRFDVSAYANNKC  303 (313)
T ss_dssp             TGGGSCGGGTCSSSE
T ss_pred             cccccChHHhcCCCC
Confidence            899999999999873

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.6e-25  Score=212.26  Aligned_cols=246  Identities=25%  Similarity=0.307  Sum_probs=188.2

Q ss_pred             EEEccCCcccccccccccccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCC
Q 007962          257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE  335 (583)
Q Consensus       257 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  335 (583)
                      .+++++++++.++... +.++++|++++|.+..++.. +.++++|++|++++|.+..++                     
T Consensus        11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~---------------------   68 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG---------------------   68 (306)
T ss_dssp             EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE---------------------
T ss_pred             EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc---------------------
Confidence            4455555555444422 23456666666666666554 577888888888888764321                     


Q ss_pred             CCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCC
Q 007962          336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI  415 (583)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l  415 (583)
                                                         ..+..+..+++|++|++++|.+..++..+..+++|++|++++|.+
T Consensus        69 -----------------------------------~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l  113 (306)
T 2z66_A           69 -----------------------------------CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL  113 (306)
T ss_dssp             -----------------------------------EEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE
T ss_pred             -----------------------------------CcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcc
Confidence                                               012333446788999999998888887788899999999999988


Q ss_pred             CCCCh-hhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCC-CCCCCCCCCCccceEeccccccccc-cc
Q 007962          416 KDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PT  492 (583)
Q Consensus       416 ~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~-~~  492 (583)
                      ..... ..+..+++|++|++++|.+.......+.++++|++|++++|.+.. ..+..+..+++|++|++++|.++.+ +.
T Consensus       114 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  193 (306)
T 2z66_A          114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT  193 (306)
T ss_dssp             ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred             cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH
Confidence            87765 567888999999999999888777778889999999999998876 4566788899999999999999876 56


Q ss_pred             chhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCCCc-cccccccceeeccCCCCcc
Q 007962          493 DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPEL-GLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       493 ~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~~L~~L~l~~~~~~~  559 (583)
                      .+..+++|++|++++|.++.++. .+..+++|++|++++|+++..++.. ...+++|+.|++++|+++.
T Consensus       194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            77789999999999999987754 5788999999999999998765544 3343589999999999864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.4e-28  Score=258.26  Aligned_cols=153  Identities=13%  Similarity=0.112  Sum_probs=85.9

Q ss_pred             ccCCccEEEcCCCCCCcC-Cccc-cCCCCCcEEEcc--C----CCCCCCCh-----hhhhcCCCCcEEecCCCCCccCCC
Q 007962          378 EAGEITKLDLSRNSIQEL-PPEL-SSCASLQTLILS--R----NKIKDWPD-----AILTSLSSLSCLKLDNNPLRQVPS  444 (583)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l-~~~l-~~~~~L~~L~l~--~----~~l~~~~~-----~~l~~l~~L~~L~l~~~~~~~~~~  444 (583)
                      .+++|++|.+..+.+++. ...+ ..+++|+.|+++  +    +.+++.+.     ..+..+++|+.|++++ .+++...
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            367777777666666541 1122 246777777777  3    34443221     1245677777777765 4444322


Q ss_pred             CccCC-CCcccEEeCCCCccCCCCCCCC-CCCCccceEecccccccc--cccchhccCcccEEeCCCCcCCc-cchhh-c
Q 007962          445 DGFKD-IPMLQILDLSYNIASLPENPPF-SSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS-IPEGF-K  518 (583)
Q Consensus       445 ~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~n~l~~-l~~~l-~  518 (583)
                      ..+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.++.  +...+..+++|++|++++|.++. ....+ .
T Consensus       449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  528 (594)
T 2p1m_B          449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ  528 (594)
T ss_dssp             HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred             HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence            22333 6777777777776654333223 446777777777776652  22233456777777777776641 11122 4


Q ss_pred             CCCCCCEEeCCCC
Q 007962          519 NLTSLTELDLSDN  531 (583)
Q Consensus       519 ~~~~L~~L~l~~~  531 (583)
                      .++.|+...+.++
T Consensus       529 ~lp~l~i~~~~~~  541 (594)
T 2p1m_B          529 KMPKLNVEVIDER  541 (594)
T ss_dssp             HCTTEEEEEECSS
T ss_pred             hCCCCEEEEecCC
Confidence            5566666555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1e-25  Score=212.52  Aligned_cols=218  Identities=24%  Similarity=0.360  Sum_probs=153.5

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCccc-chhhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l-~~~~~~   89 (583)
                      ++++|++++++++|..++               +++++|++++|.++.++ ..|.++++|++|++++|.+..+ +.+|..
T Consensus        14 ~~~~c~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CEEECCSSCCSSCCTTCC---------------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             eEEEcCcCCcccCCcCCC---------------CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            578999999999988663               47899999999999886 4688899999999999988877 568888


Q ss_pred             CCCccEEEccCCc-cccC-CccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCCCCc-ccccCCCCcEE
Q 007962           90 LHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (583)
Q Consensus        90 ~~~L~~L~L~~~~-l~~l-~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L  165 (583)
                      +++|++|++++|. ++.+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+..++. .+..+++|++|
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            8999999999886 7766 56678888888888888888766 4567777788888888877776654 36667777777


Q ss_pred             EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC
Q 007962          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l  245 (583)
                      ++++|.+..+....+..+++|+.|++++|.+..+                      .|..+..+++|+.|++++|.+..+
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV----------------------HPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCccccc----------------------CHhHccCcccccEeeCCCCcCCcC
Confidence            7777777766655555555566666555555433                      133444444555555555554444


Q ss_pred             ch-hhhCCCCCCEEEccCCccc
Q 007962          246 PA-ELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       246 ~~-~l~~~~~L~~L~l~~~~l~  266 (583)
                      +. .+..+++|++|++++|.+.
T Consensus       217 ~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEE
T ss_pred             CHHHcccCcccCEEeccCCCcc
Confidence            32 3555555555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=8e-25  Score=219.78  Aligned_cols=239  Identities=24%  Similarity=0.356  Sum_probs=195.3

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~   88 (583)
                      ...++|++++++++|..+.               ++++.|+|++|.++.++ ..|.++++|++|+|++|.+..++ .+|.
T Consensus        45 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~  109 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS---------------TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN  109 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC---------------TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred             CCEEEeCCCCcCcCCCCCC---------------CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence            4578899999999998774               46899999999999876 57899999999999999988775 4888


Q ss_pred             CCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEcccc-ccCCCCc-ccccCCCCcE
Q 007962           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK  164 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~l~~l~~L~~  164 (583)
                      ++++|++|++++|.++.++. .+..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|++
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence            99999999999999887765 58889999999999999887764 6788899999999884 4444543 5788888999


Q ss_pred             EEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCC
Q 007962          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL  242 (583)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  242 (583)
                      |++++|.+..++.  +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus       190 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             EECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            9998888887764  77888888888888888765 56778888888888888888865 45678888888888888888


Q ss_pred             ccCch-hhhCCCCCCEEEccCCccc
Q 007962          243 SALPA-ELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       243 ~~l~~-~l~~~~~L~~L~l~~~~l~  266 (583)
                      +.++. .+..+++|+.|++++|.+.
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhHhccccCCCEEEcCCCCcc
Confidence            86654 4677888888888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=3.9e-24  Score=214.79  Aligned_cols=240  Identities=25%  Similarity=0.354  Sum_probs=191.2

Q ss_pred             cccEEECcCCCCCCCC-hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhc
Q 007962          276 RLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR  354 (583)
Q Consensus       276 ~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  354 (583)
                      +++.|++++|.+..++ ..+.++++|++|++++|.+..+..                                       
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~---------------------------------------  105 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI---------------------------------------  105 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG---------------------------------------
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh---------------------------------------
Confidence            3444555555555433 357778888888888887654432                                       


Q ss_pred             cccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEe
Q 007962          355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK  433 (583)
Q Consensus       355 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  433 (583)
                                         ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..+....|..+++|+.|+
T Consensus       106 -------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A          106 -------------------GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD  166 (440)
T ss_dssp             -------------------GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             -------------------hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence                               233446789999999999988775 588899999999999999988888889999999999


Q ss_pred             cCC-CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962          434 LDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       434 l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~  511 (583)
                      +++ +.+..++...|.++++|++|++++|.++...  .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence            998 5566677778999999999999999998664  488899999999999999976 567788999999999999999


Q ss_pred             cc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhccchHHHHHHHhhcCC
Q 007962          512 SI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIP  581 (583)
Q Consensus       512 ~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (583)
                      .+ +..+..+++|++|++++|+|+.+++..+..+++|+.|++++|++.      ++........|+++..|
T Consensus       245 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~------CdC~l~~l~~~~~~~~~  309 (440)
T 3zyj_A          245 VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN------CNCDILWLSWWIKDMAP  309 (440)
T ss_dssp             EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE------CSSTTHHHHHHHHTTSC
T ss_pred             EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc------CCCCchHHHHHHHhccc
Confidence            76 455889999999999999999999988777799999999999985      33334444556655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1.1e-24  Score=219.74  Aligned_cols=239  Identities=24%  Similarity=0.340  Sum_probs=200.7

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~   88 (583)
                      ...++|++++++++|..+.               +++++|+|++|.++.++ ..|.++++|++|+|++|.+..++ .+|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~  120 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN  120 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CcEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc
Confidence            4678999999999998774               47999999999999874 57999999999999999999775 5889


Q ss_pred             CCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEcccc-ccCCCCc-ccccCCCCcE
Q 007962           89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK  164 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~-~~~~l~~-~l~~l~~L~~  164 (583)
                      ++++|++|+|++|.++.++.. +..+++|++|++++|.+..++. .+..+++|++|+++++ .+..++. .+..+++|++
T Consensus       121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  200 (452)
T 3zyi_A          121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY  200 (452)
T ss_dssp             TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred             CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence            999999999999999877654 7889999999999999987764 6888999999999984 4555543 5788899999


Q ss_pred             EEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCCC
Q 007962          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL  242 (583)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~  242 (583)
                      |++++|.+..++.  +..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+
T Consensus       201 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          201 LNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             EECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            9999999888754  78888999999999988765 56788889999999999988865 56688889999999999988


Q ss_pred             ccCch-hhhCCCCCCEEEccCCccc
Q 007962          243 SALPA-ELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       243 ~~l~~-~l~~~~~L~~L~l~~~~l~  266 (583)
                      ..++. .+..+++|+.|++++|.+.
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CccChHHhccccCCCEEEccCCCcC
Confidence            87765 4677888999999888765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.1e-25  Score=217.28  Aligned_cols=272  Identities=20%  Similarity=0.212  Sum_probs=198.9

Q ss_pred             CCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccc--cccccEEECcCCCCCCCC-hhhcccCCCcEEec
Q 007962          229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLL  305 (583)
Q Consensus       229 ~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~--~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l  305 (583)
                      |+.....+.+++.++.+|..+.  ++|++|++++|.++.++...+  ..+|++|++++|.+.+++ ..+.++++|++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            4445556777777777766543  477777777777665544221  223555555555555543 23555555555555


Q ss_pred             CCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChh-hhccCCccE
Q 007962          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITK  384 (583)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~~  384 (583)
                      ++|.                                                           +..++.. +..+++|++
T Consensus       108 s~n~-----------------------------------------------------------l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A          108 SYNY-----------------------------------------------------------LSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             CSSC-----------------------------------------------------------CSSCCHHHHTTCTTCSE
T ss_pred             CCCc-----------------------------------------------------------CCcCCHhHhCCCccCCE
Confidence            5554                                                           4444444 455788999


Q ss_pred             EEcCCCCCCcCCc--cccCCCCCcEEEccCC-CCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          385 LDLSRNSIQELPP--ELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       385 L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      |++++|.++.++.  .+..+++|++|++++| .+.......+..+++|++|++++|.+.++....+..+++|++|++++|
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            9999998888876  6788999999999998 577776677888999999999999998887777888999999999998


Q ss_pred             ccCCCCCCCCCCCCccceEecccccccccccc----hhccCcccEEeCCCCcCC-----ccchhhcCCCCCCEEeCCCCC
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNN  532 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~n~l~-----~l~~~l~~~~~L~~L~l~~~~  532 (583)
                      .+.......+..+++|++|++++|.++.++..    ....+.++.++++++.+.     .+|+.+..+++|++|++++|+
T Consensus       209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            87655443445678999999999988865322    223567788888888766     467888999999999999999


Q ss_pred             CCcCCCCccccccccceeeccCCCCccch
Q 007962          533 ISALPPELGLLEPSLQALRLDGNPLRSIR  561 (583)
Q Consensus       533 l~~~~~~~~~~~~~L~~L~l~~~~~~~~~  561 (583)
                      |+.+|..++..+++|+.|++++|++....
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            99999988666699999999999987543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=5.7e-24  Score=214.39  Aligned_cols=223  Identities=25%  Similarity=0.335  Sum_probs=186.4

Q ss_pred             cccEEECcCCCCCCC-ChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhc
Q 007962          276 RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR  354 (583)
Q Consensus       276 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  354 (583)
                      ++++|++++|.+..+ +..+.++++|++|++++|.+..+..                                       
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~---------------------------------------  116 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV---------------------------------------  116 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---------------------------------------
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh---------------------------------------
Confidence            345555555555553 3457788889999988887654432                                       


Q ss_pred             cccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEe
Q 007962          355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK  433 (583)
Q Consensus       355 ~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~  433 (583)
                                         ..+..+++|++|++++|.++.++. .+..+++|++|++++|.+..++...|..+++|+.|+
T Consensus       117 -------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  177 (452)
T 3zyi_A          117 -------------------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD  177 (452)
T ss_dssp             -------------------TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             -------------------hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence                               233446789999999999988775 488899999999999999988888889999999999


Q ss_pred             cCC-CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962          434 LDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       434 l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~  511 (583)
                      +++ +.+..++...|.++++|++|++++|.++...  .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.++
T Consensus       178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  255 (452)
T 3zyi_A          178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS  255 (452)
T ss_dssp             CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred             CCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence            998 5666788778999999999999999998763  588899999999999999976 667889999999999999999


Q ss_pred             cc-chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962          512 SI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       512 ~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~  558 (583)
                      .+ +..+..+++|++|++++|+|+.+++..+..+++|+.|++++|++.
T Consensus       256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            66 566899999999999999999999988777799999999999985

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1.5e-24  Score=204.65  Aligned_cols=218  Identities=23%  Similarity=0.311  Sum_probs=153.5

Q ss_pred             ccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCccccC-CccccccCcccEEEcCCC
Q 007962           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN  124 (583)
Q Consensus        47 L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~l~~~  124 (583)
                      -++++++++.++.+|..+  .++|++|+++++.++.++. .|..+++|++|++++|.++.+ +..+.++++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            467888888888877544  4678888888888887754 677788888888888877754 556677777777777777


Q ss_pred             c-CCcC-CcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-
Q 007962          125 Q-LKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-  201 (583)
Q Consensus       125 ~-~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-  201 (583)
                      . +..+ +..+..+++|++|++++|.+..+                       ....+..+++|++|++++|.+..++. 
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL-----------------------GPGLFRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCC-----------------------CTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEE-----------------------CHhHhhCCcCCCEEECCCCcccccCHh
Confidence            5 5555 34555556666666665555543                       33334444444444455554444432 


Q ss_pred             hhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCCcccccccccc--cccc
Q 007962          202 TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRL  277 (583)
Q Consensus       202 ~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~l~~~~~~~~--~~~L  277 (583)
                      .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++...+  ..+|
T Consensus       148 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  227 (285)
T 1ozn_A          148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL  227 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTC
T ss_pred             HhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCccc
Confidence            35566777777777777776654 478889999999999999855 7789999999999999999998776433  3469


Q ss_pred             cEEECcCCCCCC
Q 007962          278 SVLDLSNNSLSG  289 (583)
Q Consensus       278 ~~L~l~~~~~~~  289 (583)
                      +++++++|.+..
T Consensus       228 ~~L~l~~N~~~c  239 (285)
T 1ozn_A          228 QYLRLNDNPWVC  239 (285)
T ss_dssp             CEEECCSSCEEC
T ss_pred             CEEeccCCCccC
Confidence            999999998765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=2.3e-27  Score=248.98  Aligned_cols=129  Identities=13%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             cCCccEEEcC--C----CCCCcCC------ccccCCCCCcEEEccCCCCCCCChhhhhc-CCCCcEEecCCCCCccCCCC
Q 007962          379 AGEITKLDLS--R----NSIQELP------PELSSCASLQTLILSRNKIKDWPDAILTS-LSSLSCLKLDNNPLRQVPSD  445 (583)
Q Consensus       379 ~~~L~~L~l~--~----~~l~~l~------~~l~~~~~L~~L~l~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~  445 (583)
                      +++|++|+++  +    +.+++.|      ..+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++....
T Consensus       396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~  474 (594)
T 2p1m_B          396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH  474 (594)
T ss_dssp             CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH
T ss_pred             CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHH
Confidence            5666777666  2    2444322      1244566677777755 444433333333 66677777776666543322


Q ss_pred             cc-CCCCcccEEeCCCCccCCCCCC-CCCCCCccceEecccccccc-cccch-hccCcccEEeCCCC
Q 007962          446 GF-KDIPMLQILDLSYNIASLPENP-PFSSLPHLQELYLRRMQLRE-APTDI-LRLQQLRILDLSQN  508 (583)
Q Consensus       446 ~~-~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~-~~~~~-~~~~~L~~L~l~~n  508 (583)
                      .+ .++++|++|++++|.+++.... ....+++|++|++++|.++. ....+ ..++.|+...+..+
T Consensus       475 ~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          475 HVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             HHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             HHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            22 4466777777777666433222 22346677777777776541 11112 34556655555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=7.3e-25  Score=209.74  Aligned_cols=215  Identities=23%  Similarity=0.292  Sum_probs=106.7

Q ss_pred             ccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962           44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~  122 (583)
                      +++|++|++++|.++.++ ..|.++++|++|++++|.+..+++ +..+++|++|++++|.++.++    ..++|++|+++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~  107 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA  107 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence            345555555555555443 345555555555555555554433 555555555555555554333    22555555555


Q ss_pred             CCcCCcCCcccccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhh-cccccCcEEEcCCCcCCccc
Q 007962          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLI-ASWTMLTELIASKNLLNGMP  200 (583)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~~~~~  200 (583)
                      +|.+..++..  .+++|++|++++|.+..++ ..+..+++|++|++++|.+..+....+ ..+++|++|++++|.++.++
T Consensus       108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            5555544321  2345555555555555442 234445555555555555554443333 23455555555555554443


Q ss_pred             hhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccc
Q 007962          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       201 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~  266 (583)
                      .. ..+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..+++|+.|++++|.+.
T Consensus       186 ~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          186 GQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             cc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            21 224455555555555554444444555555555555555544444444455555555544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=2.6e-25  Score=212.31  Aligned_cols=246  Identities=16%  Similarity=0.154  Sum_probs=133.9

Q ss_pred             CCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCc--ccchhhh-------CCCCccEEEccCCccc-cCCc
Q 007962           39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIG-------ELHMLKSLDVSFNSIM-KIPD  108 (583)
Q Consensus        39 ~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~--~l~~~~~-------~~~~L~~L~L~~~~l~-~l~~  108 (583)
                      +.+...++|+++++++|.+ .+|..+...  |+.|+++++.+.  .++..+.       .+++|++|++++|.++ .+|.
T Consensus        37 ~~~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           37 ELYGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EEEccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            3344455566666666655 455433322  555666665554  2333333       4566666666666655 4454


Q ss_pred             cc--cccCcccEEEcCCCcCCcCCcccccC-----CCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceee----c
Q 007962          109 EI--GSATALVKFDCSSNQLKELPSSLGRC-----LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVL----S  176 (583)
Q Consensus       109 ~~--~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~----~  176 (583)
                      .+  ..+++|++|++++|.++.+|..+..+     ++|++|++++|.+..++ ..+..+++|++|++++|.+...    .
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence            44  55666666666666665555555444     56666666666665544 4556666666666666654321    1


Q ss_pred             hhhhcccccCcEEEcCCCcCCccc---h-hhcCCccccEEEccCCcCcccC--CCCcCCCCCcEEEcCCCCCccCchhhh
Q 007962          177 NNLIASWTMLTELIASKNLLNGMP---E-TIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSALPAELG  250 (583)
Q Consensus       177 ~~~~~~~~~L~~L~l~~~~~~~~~---~-~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~l~  250 (583)
                      ...+..+++|++|++++|.+..++   . .+..+++|+.|++++|.+...+  ..+..+++|+.|++++|.++.+|..+.
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~  273 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP  273 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence            111255566666666666665322   1 2234556666666666665433  234445666666666666665555544


Q ss_pred             CCCCCCEEEccCCcccccccccccccccEEECcCCCCCC
Q 007962          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG  289 (583)
Q Consensus       251 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~  289 (583)
                        ++|++|++++|+++.++......+|+++++++|.+.+
T Consensus       274 --~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             --SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred             --CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence              5666666666666655443333446666666665543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.1e-23  Score=195.78  Aligned_cols=217  Identities=21%  Similarity=0.309  Sum_probs=174.3

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-hhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~~   89 (583)
                      ..++|++.++.++|..++               +++++|++++|.++.++. .|.++++|++|++++|.+..++. +|..
T Consensus        10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   74 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence            468999999999999774               479999999999998875 79999999999999999998765 7999


Q ss_pred             CCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCC--CCcccccCCCCcEE
Q 007962           90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (583)
Q Consensus        90 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~--l~~~l~~l~~L~~L  165 (583)
                      +++|++|++++|.++.++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.+..  ++..+..+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            999999999999998665 568899999999999999987765 68899999999999999886  67889999999999


Q ss_pred             EecCCcceeechhhhcccccCc----EEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCC-CcCCCCCcEEEcCCC
Q 007962          166 DVEGNKLTVLSNNLIASWTMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN  240 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~  240 (583)
                      ++++|.+..+....+..+++|+    .+++++|.+..++.......+|+.|++++|.+..++.. +..+++|+.|++++|
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            9999999988777677777766    67777777766555444444666666666666655432 344555555555555


Q ss_pred             CCc
Q 007962          241 ALS  243 (583)
Q Consensus       241 ~~~  243 (583)
                      .+.
T Consensus       235 ~~~  237 (276)
T 2z62_A          235 PWD  237 (276)
T ss_dssp             CBC
T ss_pred             ccc
Confidence            444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.2e-24  Score=208.14  Aligned_cols=255  Identities=18%  Similarity=0.178  Sum_probs=211.0

Q ss_pred             cCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccc-hhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962           45 VDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~  122 (583)
                      ..++..+++.+.+...+ ..+..+++|++|++++|.++.++ ..|..+++|++|++++|.++..+. +..+++|++|+++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            35777888998888765 45788899999999999999886 589999999999999999986654 8999999999999


Q ss_pred             CCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-h
Q 007962          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-E  201 (583)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~  201 (583)
                      +|.++.++    ..++|++|++++|.+..++.  ..+++|++|++++|.+..+....+..+++|++|++++|.+..++ .
T Consensus        89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  162 (317)
T 3o53_A           89 NNYVQELL----VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA  162 (317)
T ss_dssp             SSEEEEEE----ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred             CCcccccc----CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence            99988765    44899999999999987643  34789999999999999988877999999999999999997653 3


Q ss_pred             hh-cCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccccccccccc-ccccE
Q 007962          202 TI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSV  279 (583)
Q Consensus       202 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~  279 (583)
                      .+ ..+++|+.|++++|.+..++. ...+++|++|++++|.+..++..+..+++|++|++++|.++.++..... .+|+.
T Consensus       163 ~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~  241 (317)
T 3o53_A          163 ELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH  241 (317)
T ss_dssp             GGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCE
T ss_pred             HHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCE
Confidence            44 468999999999999987754 3458999999999999998888899999999999999988876654322 34778


Q ss_pred             EECcCCCCC--CCChhhcccCCCcEEecCC
Q 007962          280 LDLSNNSLS--GLPPEIGKMTTLRKLLLTG  307 (583)
Q Consensus       280 L~l~~~~~~--~~~~~~~~~~~L~~L~l~~  307 (583)
                      +++++|.+.  .++..+..+++++.+++.+
T Consensus       242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~  271 (317)
T 3o53_A          242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQT  271 (317)
T ss_dssp             EECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred             EEccCCCccCcCHHHHHhccccceEEECCC
Confidence            888877776  2555566677777776653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=8.4e-23  Score=190.66  Aligned_cols=200  Identities=30%  Similarity=0.428  Sum_probs=182.3

Q ss_pred             ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (583)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (583)
                      ..+.++++++.+..+|..+.  +.+++|++++|.++.++. .+..+++|++|++++|.++.++...|..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            46789999999998887653  689999999999999775 789999999999999999999888889999999999999


Q ss_pred             CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch
Q 007962          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  515 (583)
Q Consensus       437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~  515 (583)
                      |.+..++...|.++++|++|++++|.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            999999988899999999999999999999888899999999999999999988765 6789999999999999998865


Q ss_pred             -hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          516 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       516 -~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                       .+..+++|++|++++|+|+.+++..+..+++|+.|++++|++..
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence             48899999999999999999998877767999999999999854

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.2e-24  Score=207.61  Aligned_cols=241  Identities=20%  Similarity=0.206  Sum_probs=127.9

Q ss_pred             CCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccc--cCCcccc-------ccCcccEEEcCCCcCC-cCCccc--
Q 007962           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL--  133 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~l~~~~~~-~~~~~~--  133 (583)
                      ..++|+++++++|.+ .+|..+...  |++|++++|.+.  .++..+.       ++++|++|++++|.++ .+|..+  
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            344555555555555 555544333  555556555553  2333333       4556666666666555 344433  


Q ss_pred             ccCCCCCEEEccccccCCCCcccccC-----CCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCc---cchhh--
Q 007962          134 GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI--  203 (583)
Q Consensus       134 ~~~~~L~~L~l~~~~~~~l~~~l~~l-----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~l--  203 (583)
                      ..+++|++|++++|.+..++..+..+     ++|++|++++|.+..+....++.+++|++|++++|.+..   ++..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            55566666666666555555444444     556666666666655555555556666666666665432   12222  


Q ss_pred             cCCccccEEEccCCcCcccC----CCCcCCCCCcEEEcCCCCCccCc--hhhhCCCCCCEEEccCCcccccccccccccc
Q 007962          204 GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQLRL  277 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L  277 (583)
                      ..+++|+.|++++|.+..++    ..+..+++|+.|++++|.+...+  ..+..+++|++|++++|.++.++.... .+|
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L  276 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKL  276 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCc
Confidence            45556666666666555221    11234556666666666555432  233445566666666665555544443 456


Q ss_pred             cEEECcCCCCCCCChhhcccCCCcEEecCCCccc
Q 007962          278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR  311 (583)
Q Consensus       278 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  311 (583)
                      ++|++++|.+.++|. +..+++|+++++++|+++
T Consensus       277 ~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          277 SVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             eEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence            666666666555543 555566666666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.4e-23  Score=209.51  Aligned_cols=235  Identities=21%  Similarity=0.252  Sum_probs=184.5

Q ss_pred             eccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhhhCCCCc
Q 007962           15 NLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHML   93 (583)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L   93 (583)
                      +++......+|..+....         ..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+++ +..+++|
T Consensus        13 ~~~~~~~~~l~~~l~~l~---------~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L   82 (487)
T 3oja_A           13 KIEKVTDSSLKQALASLR---------QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTL   82 (487)
T ss_dssp             EEESCCTTTHHHHHHTTS---------TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTC
T ss_pred             ecccCchhhhHHHHHHhc---------ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCC
Confidence            344444445666554421         12458999999999998775 578899999999999998886654 8888999


Q ss_pred             cEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCC-CcccccCCCCcEEEecCCcc
Q 007962           94 KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKL  172 (583)
Q Consensus        94 ~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~l~~l~~L~~L~l~~~~i  172 (583)
                      ++|++++|.++.++.    .++|++|++++|.+..++..  .+++|++|++++|.+..+ +..+..+++|++|++++|.+
T Consensus        83 ~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A           83 RTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             CEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred             CEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence            999999998876653    38899999999988877543  467889999999988865 45678888999999999988


Q ss_pred             eeechhhhc-ccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhC
Q 007962          173 TVLSNNLIA-SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK  251 (583)
Q Consensus       173 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~  251 (583)
                      ..+.+..+. .+++|+.|++++|.+..++. ...+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|..+..
T Consensus       157 ~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~  235 (487)
T 3oja_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF  235 (487)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC
T ss_pred             CCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhcc
Confidence            876665565 67888999999888877754 3357888888888888888877788888888888888888888888888


Q ss_pred             CCCCCEEEccCCccc
Q 007962          252 LSKLGTLDLHSNQLK  266 (583)
Q Consensus       252 ~~~L~~L~l~~~~l~  266 (583)
                      +++|+.+++++|.+.
T Consensus       236 l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          236 SQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECTTCCBC
T ss_pred             CCCCCEEEcCCCCCc
Confidence            888888888888776

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=2e-23  Score=211.24  Aligned_cols=233  Identities=19%  Similarity=0.204  Sum_probs=204.0

Q ss_pred             HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI   87 (583)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~   87 (583)
                      .+.++++++++++++.+++..+..            +++|++|+|++|.++.+++ |..+++|++|+|++|.++.++.  
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~--   97 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAP------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--   97 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTT------------CTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE--
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhC------------CCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC--
Confidence            358999999999999998755443            7899999999999997655 9999999999999999987753  


Q ss_pred             hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCC-CCcccc-cCCCCcE
Q 007962           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITS-LPEDLA-DCSKMSK  164 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-l~~~l~-~l~~L~~  164 (583)
                        .++|++|++++|.++.++..  .+++|+.|++++|.++.+ +..+..+++|++|++++|.+.. .+..+. .+++|++
T Consensus        98 --~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A           98 --GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             --CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred             --CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence              38999999999999876543  568999999999999976 4578899999999999999985 445554 7999999


Q ss_pred             EEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc-
Q 007962          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-  243 (583)
Q Consensus       165 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-  243 (583)
                      |++++|.+..++.  ...+++|+.|++++|.+..++..+..+++|+.|++++|.+..+|..+..+++|+.+++++|.+. 
T Consensus       174 L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred             EecCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcC
Confidence            9999999998855  4568999999999999999988899999999999999999999999999999999999999998 


Q ss_pred             -cCchhhhCCCCCCEEEcc
Q 007962          244 -ALPAELGKLSKLGTLDLH  261 (583)
Q Consensus       244 -~l~~~l~~~~~L~~L~l~  261 (583)
                       .+|..+..++.|+.+++.
T Consensus       252 ~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          252 GTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHhCCCCcEEecc
Confidence             667778888888877765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.3e-22  Score=189.05  Aligned_cols=196  Identities=28%  Similarity=0.379  Sum_probs=109.5

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAI   87 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~   87 (583)
                      +.+++++|++++++++|..++               ++++.|++++|.++.++ ..|.++++|++|++++|.++.++.. 
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-   73 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-   73 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-
T ss_pred             CCccEEECCCCCCCcCCCCCC---------------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-
Confidence            445666666666666666553               34666666666666553 3566666666666666666655433 


Q ss_pred             hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCCCcc-cccCCCCcEE
Q 007962           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL  165 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L  165 (583)
                      ..+++|++|++++|.++.+|..+..+++|++|++++|+++.++ ..+..+++|++|++++|.+..++.. +..+++|++|
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            5566666666666666666555555666666666666655554 3455555555555555555544322 3445555555


Q ss_pred             EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc
Q 007962          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  243 (583)
                      ++++|.+..++...+..                       +++|+.|++++|.+..+|..+...++|+.+++++|.+.
T Consensus       154 ~L~~N~l~~l~~~~~~~-----------------------l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNG-----------------------LENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             ECTTSCCSCCCTTTTTT-----------------------CTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ECCCCcCCccCHHHhcC-----------------------cCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            55555555444444444                       45555555555555555555555555555555555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=4e-22  Score=187.00  Aligned_cols=185  Identities=29%  Similarity=0.330  Sum_probs=154.4

Q ss_pred             hhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcc
Q 007962          375 EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPML  453 (583)
Q Consensus       375 ~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  453 (583)
                      .+..+++|++|++++|.++.++. .+..+++|++|++++|.+.......|..+++|++|++++|.+..+....+..+++|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            34456788888888888887654 67888999999999999888877778889999999999999988887778899999


Q ss_pred             cEEeCCCCccCCCC-CCCCCCCCccceEecccccccccc-cchhccCccc----EEeCCCCcCCccchhhcCCCCCCEEe
Q 007962          454 QILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLR----ILDLSQNSLQSIPEGFKNLTSLTELD  527 (583)
Q Consensus       454 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~L~----~L~l~~n~l~~l~~~l~~~~~L~~L~  527 (583)
                      ++|++++|.+.... +..+..+++|++|++++|.++.++ ..+..+++|+    +|++++|.++.++.......+|++|+
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~  206 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA  206 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEE
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEE
Confidence            99999999988754 667888999999999999998764 3555666666    89999999998876665667899999


Q ss_pred             CCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          528 LSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       528 l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      +++|+++.+++..+..+++|+.|++++|+++.
T Consensus       207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            99999999988877666899999999999873

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=7.3e-22  Score=184.28  Aligned_cols=195  Identities=25%  Similarity=0.386  Sum_probs=113.9

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-hhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~   88 (583)
                      .++++|++++++.+|..++               ++++.|++++|.++.++. .|.++++|++|++++|.++.++. .|.
T Consensus        18 ~~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~   82 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP---------------ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK   82 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS
T ss_pred             CCEEEccCCCCCccCCCCC---------------CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc
Confidence            4567777777777776553               356777777777776653 56677777777777777666654 346


Q ss_pred             CCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccCCCCcc-cccCCCCcEE
Q 007962           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKL  165 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l~~~-l~~l~~L~~L  165 (583)
                      .+++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|
T Consensus        83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccccee
Confidence            66677777777666665543 34556666666666666655542 345555555655555555544432 4455555555


Q ss_pred             EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCCCc
Q 007962          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~  243 (583)
                      ++++|.+..+....+..                       +++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus       163 ~L~~n~l~~~~~~~~~~-----------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDK-----------------------LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             ECCSSCCSCCCTTTTTT-----------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EecCCcCcEeChhHhcc-----------------------CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            55555555544444444                       4555555555555554433 2455556666666665544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=7.8e-22  Score=185.47  Aligned_cols=198  Identities=25%  Similarity=0.296  Sum_probs=127.7

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccc-hhhhCCCCccEEEccCCccccCCccccccCcccEEEcC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~  122 (583)
                      +++++.++++++.++.+|..+.  +++++|++++|.+..++ ..|..+++|++|++++|.++.++.. ..+++|++|+++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence            4556666666666666554432  45666666666655442 3555556666666666555544332 444455555555


Q ss_pred             CCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-
Q 007962          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-  201 (583)
Q Consensus       123 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-  201 (583)
                      +|.+..+                       +..+..+++|++|++++|.+..+....|..+++|++|++++|.+..++. 
T Consensus        86 ~N~l~~l-----------------------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  142 (290)
T 1p9a_G           86 HNQLQSL-----------------------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG  142 (290)
T ss_dssp             SSCCSSC-----------------------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCcCCcC-----------------------chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence            5554444                       4444445555555555555555554445555666666666666655543 


Q ss_pred             hhcCCccccEEEccCCcCcccCCC-CcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccc
Q 007962          202 TIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE  267 (583)
Q Consensus       202 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~  267 (583)
                      .+..+++|+.|++++|.+..+|.. +..+++|+.|++++|.+..+|..+...++|+.+++++|.+.-
T Consensus       143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            345677888888888888877654 578999999999999999999999999999999999998763

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=4e-22  Score=189.46  Aligned_cols=193  Identities=21%  Similarity=0.314  Sum_probs=110.0

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +++|++|+++++.++.++ .+.++++|++|++++|.+..++. +..+++|++|++++|.++.++ .+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            456666666666666664 46666666666666666666655 666666666666666665553 455666666666666


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      |.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..+..  +..+                    
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l--------------------  172 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANL--------------------  172 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTC--------------------
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCC--------------------
Confidence            66655542 5555566666666655555433 4555555555555555554433  4444                    


Q ss_pred             cCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCccccc
Q 007962          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~  268 (583)
                         ++|+.|++++|.+..++. +..+++|+.|++++|.+..++ .+..+++|+.|++++|.++..
T Consensus       173 ---~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          173 ---SKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             ---TTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECC
T ss_pred             ---CCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecC
Confidence               445555555544444432 444555555555555555444 255556666666666655543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.1e-21  Score=184.57  Aligned_cols=197  Identities=25%  Similarity=0.333  Sum_probs=174.1

Q ss_pred             HHHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch
Q 007962            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (583)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~   85 (583)
                      ...+.++++++++++++++|. +.             .+++|++|++++|.++.++. +.++++|++|++++|.+..++ 
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~-~~-------------~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-  101 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEG-VQ-------------YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-  101 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT-GG-------------GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-
T ss_pred             HHcCCcCEEEeeCCCccCchh-hh-------------ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-
Confidence            456789999999999999874 32             27899999999999999987 999999999999999999885 


Q ss_pred             hhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEE
Q 007962           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL  165 (583)
Q Consensus        86 ~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L  165 (583)
                      .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|
T Consensus       102 ~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL  178 (308)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence            68999999999999999998764 8999999999999999998865 8899999999999999998876 8999999999


Q ss_pred             EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCC
Q 007962          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS  224 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  224 (583)
                      ++++|.+..+..  +..+++|++|++++|.+..++ .+..+++|+.|++++|.+...|.
T Consensus       179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             ECCCCccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence            999999998775  788889999999999888776 37778888888888888776544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.88  E-value=4.4e-22  Score=182.32  Aligned_cols=195  Identities=18%  Similarity=0.244  Sum_probs=108.6

Q ss_pred             CccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCC-Ccccch-hhhCCCCccEEEccC-CccccCC-ccccccCcccEEE
Q 007962           46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKFD  120 (583)
Q Consensus        46 ~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~-l~~l~~-~~~~~~~L~~L~L~~-~~l~~l~-~~~~~l~~L~~L~  120 (583)
                      ++++|++++|.++.++. .|.++++|++|++++|. ++.++. +|..+++|++|++++ |.++.++ ..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56777777777776654 56667777777777665 666654 566666666666666 5665544 2355555566666


Q ss_pred             cCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCC-cceeechhhhcccccCc-EEEcCCCcCCc
Q 007962          121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNG  198 (583)
Q Consensus       121 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~-~i~~~~~~~~~~~~~L~-~L~l~~~~~~~  198 (583)
                      +++|.++.+|. +..+++|+                    .|++|++++| .+..++...|..+++|+ .|++++|.++.
T Consensus       112 l~~n~l~~lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             CCCCCCccccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence            55555555543 44444444                    0014555544 44444444455555555 55555555544


Q ss_pred             cchhhcCCccccEEEccCCc-CcccC-CCCcCC-CCCcEEEcCCCCCccCchhhhCCCCCCEEEccCC
Q 007962          199 MPETIGSLSRLIRLDLHQNR-ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (583)
Q Consensus       199 ~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~~~~-~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~  263 (583)
                      ++......++|+.|++++|. +..++ ..+..+ ++|+.|++++|.+..+|..  .+++|+.|++.++
T Consensus       171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            44332222555566665553 55443 334555 6666666666666655443  4556666666554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.4e-21  Score=179.00  Aligned_cols=200  Identities=17%  Similarity=0.240  Sum_probs=142.5

Q ss_pred             chhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCc-cccCCc-cccccCcccEEEcCC-CcCCcCC-c
Q 007962           57 IEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-S  131 (583)
Q Consensus        57 i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~-l~~l~~-~~~~l~~L~~L~l~~-~~~~~~~-~  131 (583)
                      ++.+|. +.  ++|++|++++|.++.++. +|..+++|++|++++|. ++.++. .|.++++|++|++++ |.++.++ .
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            556665 32  367777777777776655 66677777777777775 665543 455566666666665 5555444 2


Q ss_pred             ccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCc---EEEcCCC-cCCccch-hhcCC
Q 007962          132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT---ELIASKN-LLNGMPE-TIGSL  206 (583)
Q Consensus       132 ~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~l~~~  206 (583)
                      .+..+++|++|++++|                       .+..++.  +..+++|+   .|++++| .+..++. .+..+
T Consensus       100 ~f~~l~~L~~L~l~~n-----------------------~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l  154 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNT-----------------------GLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL  154 (239)
T ss_dssp             SEECCTTCCEEEEEEE-----------------------CCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred             HhCCCCCCCEEeCCCC-----------------------CCccccc--cccccccccccEEECCCCcchhhcCcccccch
Confidence            3444555555555544                       4444433  55556666   9999999 8888765 48889


Q ss_pred             cccc-EEEccCCcCcccCCCCcCCCCCcEEEcCCCC-CccCc-hhhhCC-CCCCEEEccCCcccccccccccccccEEEC
Q 007962          207 SRLI-RLDLHQNRILSIPSSISGCCSLAEFYMGNNA-LSALP-AELGKL-SKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (583)
Q Consensus       207 ~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~-~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l  282 (583)
                      ++|+ .|++++|.+..+|......++|+.|++++|. +..++ ..+..+ ++|++|++++|.++.++.. ...+++.|++
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             hcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence            9999 9999999999887765555899999999995 98775 468888 9999999999999988776 4557999998


Q ss_pred             cCC
Q 007962          283 SNN  285 (583)
Q Consensus       283 ~~~  285 (583)
                      +++
T Consensus       234 ~~~  236 (239)
T 2xwt_C          234 RNT  236 (239)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.1e-20  Score=174.23  Aligned_cols=177  Identities=31%  Similarity=0.431  Sum_probs=115.3

Q ss_pred             CccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCC
Q 007962          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (583)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  460 (583)
                      ..++++++++.++.+|..+.  ++++.|++++|.+.......|..+++|++|++++|.+..+....|.++++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            35566666666666665443  4666666666666666665666666677777766666666666666666777777776


Q ss_pred             CccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCcCCC
Q 007962          461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPP  538 (583)
Q Consensus       461 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~  538 (583)
                      |.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+++
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            666666666666667777777777766666554 3456677777777777666654 36666777777777777776666


Q ss_pred             CccccccccceeeccCCCCcc
Q 007962          539 ELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       539 ~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      ..+..+++|+.|++++|++..
T Consensus       173 ~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          173 GAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTCTTCCEEECCSCCBCT
T ss_pred             HHHhCCCCCCEEEeeCCceeC
Confidence            554444667777777776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=3.1e-20  Score=173.31  Aligned_cols=179  Identities=31%  Similarity=0.412  Sum_probs=125.7

Q ss_pred             hccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEE
Q 007962          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (583)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  456 (583)
                      ..+++|+.++++++.+..++ .+..+++|++|++++|.+.+..  .+..+++|++|++++|.+++++...|.++++|++|
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence            34567777777777766654 3566777777777777776653  45677777777777777777766667777777777


Q ss_pred             eCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCCCCC
Q 007962          457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS  534 (583)
Q Consensus       457 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~l~  534 (583)
                      ++++|.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            7777777766666677777777777777777766544 35677777777777777766543 567777777777777777


Q ss_pred             cCCCCccccccccceeeccCCCCc
Q 007962          535 ALPPELGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       535 ~~~~~~~~~~~~L~~L~l~~~~~~  558 (583)
                      .+++..+..+++|+.|++++|++.
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcc
Confidence            776665555577777777777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=7e-21  Score=177.74  Aligned_cols=194  Identities=27%  Similarity=0.367  Sum_probs=171.4

Q ss_pred             cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (583)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (583)
                      .+++.+.+.++.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++......|..+++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            57889999999888765 4677999999999999998864 688999999999999999999888889999999999999


Q ss_pred             CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccch
Q 007962          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE  515 (583)
Q Consensus       437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~  515 (583)
                      |.++.++...|.++++|++|++++|.++...+..+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            999999888899999999999999999988888889999999999999999987665 4789999999999999997764


Q ss_pred             -hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          516 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       516 -~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                       .+..+++|++|++++|++..       .++.|+.+++++|.++.
T Consensus       199 ~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g  236 (272)
T 3rfs_A          199 GVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG  236 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGG
T ss_pred             HHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCC
Confidence             47899999999999997763       23568888888777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=8.3e-22  Score=194.40  Aligned_cols=225  Identities=19%  Similarity=0.220  Sum_probs=148.2

Q ss_pred             cccCccEEEcCCCcchh-----hhHhhCCCCCCcEEEcCCCCCcc----cchh-------hhCCCCccEEEccCCcccc-
Q 007962           43 EAVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK-  105 (583)
Q Consensus        43 ~~~~L~~L~ls~~~i~~-----l~~~~~~~~~L~~L~L~~~~l~~----l~~~-------~~~~~~L~~L~L~~~~l~~-  105 (583)
                      .+++|++|++++|.++.     ++..+.++++|++|+|++|.+..    +|..       +..+++|++|++++|.++. 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            36778888888888874     33457788888888888875542    2332       3678888888888887764 


Q ss_pred             ----CCccccccCcccEEEcCCCcCCc-----CCcccccC---------CCCCEEEccccccC--CCC---cccccCCCC
Q 007962          106 ----IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKM  162 (583)
Q Consensus       106 ----l~~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~l~---~~l~~l~~L  162 (583)
                          ++..+..+++|++|++++|.++.     ++..+..+         ++|++|++++|.+.  .++   ..+..+++|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence                56667778888888888887752     22334444         77888888887775  232   356667777


Q ss_pred             cEEEecCCccee-----echhhhcccccCcEEEcCCCcC-----CccchhhcCCccccEEEccCCcCcc-----cCCCCc
Q 007962          163 SKLDVEGNKLTV-----LSNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSIS  227 (583)
Q Consensus       163 ~~L~l~~~~i~~-----~~~~~~~~~~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~~  227 (583)
                      ++|++++|.+..     +....+..+++|+.|++++|.+     ..++..+..+++|+.|++++|.+..     ++..+.
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~  269 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  269 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence            777777777662     2221356667777777777776     3455566666777777777776652     234442


Q ss_pred             --CCCCCcEEEcCCCCCcc-----Cchhh-hCCCCCCEEEccCCcccc
Q 007962          228 --GCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKE  267 (583)
Q Consensus       228 --~~~~L~~L~l~~~~~~~-----l~~~l-~~~~~L~~L~l~~~~l~~  267 (583)
                        .+++|+.|++++|.+..     ++..+ .++++|++|++++|.++.
T Consensus       270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence              36667777777766664     55555 446666666666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.7e-21  Score=192.16  Aligned_cols=223  Identities=19%  Similarity=0.173  Sum_probs=154.7

Q ss_pred             cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcc-----cchhhhCCCCccEEEccCCccc----cCCccc-----
Q 007962           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM----KIPDEI-----  110 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~~~L~~L~L~~~~l~----~l~~~~-----  110 (583)
                      +.|+...+....+..++..+..+++|++|+|++|.+..     ++..+..+++|++|++++|.+.    .+|..+     
T Consensus         9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~   88 (386)
T 2ca6_A            9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQ   88 (386)
T ss_dssp             CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHH
T ss_pred             cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHH
Confidence            35555566666677787888999999999999998884     3345778999999999997554    233333     


Q ss_pred             --cccCcccEEEcCCCcCCc-----CCcccccCCCCCEEEccccccC-----CCCcccccC---------CCCcEEEecC
Q 007962          111 --GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCIT-----SLPEDLADC---------SKMSKLDVEG  169 (583)
Q Consensus       111 --~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l---------~~L~~L~l~~  169 (583)
                        ..+++|++|++++|.+..     ++..+..+++|++|++++|.+.     .++..+..+         ++|++|++++
T Consensus        89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence              677888888888888775     5567778888888888888775     233334444         7888888888


Q ss_pred             Ccceeech----hhhcccccCcEEEcCCCcCCc------cchhhcCCccccEEEccCCcC-----cccCCCCcCCCCCcE
Q 007962          170 NKLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAE  234 (583)
Q Consensus       170 ~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~------~~~~l~~~~~L~~L~l~~~~~-----~~~~~~~~~~~~L~~  234 (583)
                      |.+.....    ..+..+++|+.|++++|.+..      .+..+..+++|+.|++++|.+     ..++..+..+++|+.
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            87752221    235567777788887777751      222566677777777777776     345556667777777


Q ss_pred             EEcCCCCCcc-----CchhhhC--CCCCCEEEccCCcccc
Q 007962          235 FYMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE  267 (583)
Q Consensus       235 L~l~~~~~~~-----l~~~l~~--~~~L~~L~l~~~~l~~  267 (583)
                      |++++|.+..     ++..+..  +++|++|++++|.++.
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            7777777663     2444433  6777777777776665

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=1.5e-19  Score=166.54  Aligned_cols=178  Identities=30%  Similarity=0.418  Sum_probs=161.9

Q ss_pred             cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecC
Q 007962          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (583)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  435 (583)
                      ...+.++++++.+..+|..+.  +.++.|++++|.+..++. .+..+++|++|++++|.+.......|..+++|+.|+++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            356789999999999988764  689999999999998654 68999999999999999999988888999999999999


Q ss_pred             CCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccccc-chhccCcccEEeCCCCcCCccc
Q 007962          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP  514 (583)
Q Consensus       436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~  514 (583)
                      +|.++.++...|..+++|++|++++|.++......+..+++|++|++++|.++.++. .+..+++|++|++++|.++.++
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            999999998889999999999999999998888889999999999999999998877 5778999999999999999876


Q ss_pred             h-hhcCCCCCCEEeCCCCCCCcC
Q 007962          515 E-GFKNLTSLTELDLSDNNISAL  536 (583)
Q Consensus       515 ~-~l~~~~~L~~L~l~~~~l~~~  536 (583)
                      . .+..+++|++|++++|++...
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            5 588999999999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=4.9e-21  Score=185.38  Aligned_cols=242  Identities=16%  Similarity=0.184  Sum_probs=171.0

Q ss_pred             CccEEEcCCCcchhhhHhhCCC--CCCcEEEcCCCCCcccchhhhCCCCccEEEccCCcccc--CCccccccCcccEEEc
Q 007962           46 DLQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDC  121 (583)
Q Consensus        46 ~L~~L~ls~~~i~~l~~~~~~~--~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~l  121 (583)
                      .++.++++++.+.  +..+..+  ++++.++++++.+...+..+..+++|++|++++|.++.  ++..+..+++|++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            3677888887776  3455555  78888888888877666656678888888888887762  6667778888888888


Q ss_pred             CCCcCC-cCCcccccCCCCCEEEcccc-ccC--CCCcccccCCCCcEEEecCC-cceee-chhhhcccc-cCcEEEcCCC
Q 007962          122 SSNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVL-SNNLIASWT-MLTELIASKN  194 (583)
Q Consensus       122 ~~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~--~l~~~l~~l~~L~~L~l~~~-~i~~~-~~~~~~~~~-~L~~L~l~~~  194 (583)
                      ++|.++ ..+..+..+++|++|++++| .+.  .++..+..+++|++|++++| .+... ....+..++ +|++|++++|
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            888776 44566777888888888888 565  35566777888888888888 77653 233467777 8888888888


Q ss_pred             c--C--CccchhhcCCccccEEEccCCc-Cc-ccCCCCcCCCCCcEEEcCCCC-Cc-cCchhhhCCCCCCEEEccCCccc
Q 007962          195 L--L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LS-ALPAELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       195 ~--~--~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~~~-~~-~l~~~l~~~~~L~~L~l~~~~l~  266 (583)
                      .  +  ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++| +.
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~  284 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP  284 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence            4  3  3456666778888888888887 44 445567778888888888885 22 11235677888888888888 44


Q ss_pred             ccccccccccccEEECcCCCCCCC
Q 007962          267 EYCVEACQLRLSVLDLSNNSLSGL  290 (583)
Q Consensus       267 ~~~~~~~~~~L~~L~l~~~~~~~~  290 (583)
                      ..........+..|+++.|.+++.
T Consensus       285 ~~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          285 DGTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TTCHHHHHHHSTTSEESCCCSCCT
T ss_pred             HHHHHHHHhhCcceEEecccCccc
Confidence            322222223466666777766663

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.83  E-value=4.3e-21  Score=187.19  Aligned_cols=244  Identities=19%  Similarity=0.216  Sum_probs=164.9

Q ss_pred             eeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-----HhhCCCC-CCcEEEcCCCCCccc-ch
Q 007962           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PA   85 (583)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-----~~~~~~~-~L~~L~L~~~~l~~l-~~   85 (583)
                      ++++++++++...+.+...            .++|++|++++|.++..+     ..|.+++ +|++|+|++|.++.. +.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~   69 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI------------PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD   69 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH
T ss_pred             ccccccccchHHHHHHHhC------------CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH
Confidence            4677777777655544432            456899999998888654     5678888 899999998888854 33


Q ss_pred             hhhCC-----CCccEEEccCCccccCCc-c----cccc-CcccEEEcCCCcCCcCCc-c----ccc-CCCCCEEEccccc
Q 007962           86 AIGEL-----HMLKSLDVSFNSIMKIPD-E----IGSA-TALVKFDCSSNQLKELPS-S----LGR-CLNLSDFKASNNC  148 (583)
Q Consensus        86 ~~~~~-----~~L~~L~L~~~~l~~l~~-~----~~~l-~~L~~L~l~~~~~~~~~~-~----~~~-~~~L~~L~l~~~~  148 (583)
                      .+..+     ++|++|++++|.++..+. .    +..+ ++|++|++++|.++..+. .    +.. .++|++|++++|.
T Consensus        70 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           70 ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            44443     889999999888874432 2    4444 788888888888875542 2    333 3588888888888


Q ss_pred             cC-----CCCcccccCC-CCcEEEecCCcceeechhhhc----cc-ccCcEEEcCCCcCCc-----cchhhcC-CccccE
Q 007962          149 IT-----SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIA----SW-TMLTELIASKNLLNG-----MPETIGS-LSRLIR  211 (583)
Q Consensus       149 ~~-----~l~~~l~~l~-~L~~L~l~~~~i~~~~~~~~~----~~-~~L~~L~l~~~~~~~-----~~~~l~~-~~~L~~  211 (583)
                      +.     .++..+..++ +|++|++++|.+.......+.    .. ++|++|++++|.+..     ++..+.. .++|+.
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            77     3334455555 888888888888766654333    33 588888888888765     4555544 347888


Q ss_pred             EEccCCcCcccC-----CCCcCCCCCcEEEcCCCCCccC--------chhhhCCCCCCEEEccCCccccc
Q 007962          212 LDLHQNRILSIP-----SSISGCCSLAEFYMGNNALSAL--------PAELGKLSKLGTLDLHSNQLKEY  268 (583)
Q Consensus       212 L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~l--------~~~l~~~~~L~~L~l~~~~l~~~  268 (583)
                      |++++|.+...+     ..+..+++|+.|++++|.+..+        +..+..+++|+.|++++|.+...
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            888888776432     3356667777777777763322        33455666777777777766543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=6.5e-20  Score=174.84  Aligned_cols=219  Identities=16%  Similarity=0.148  Sum_probs=139.3

Q ss_pred             cCccEEEcCCCcchh--hhH--hhCCCCCCcEEEcCCCCCcc-cchhh--hCCCCccEEEccCCccccC-C----ccccc
Q 007962           45 VDLQKLILAHNNIEK--LKE--DLRNLPLLTVLNVSHNKLSE-LPAAI--GELHMLKSLDVSFNSIMKI-P----DEIGS  112 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~--l~~--~~~~~~~L~~L~L~~~~l~~-l~~~~--~~~~~L~~L~L~~~~l~~l-~----~~~~~  112 (583)
                      ..++.+.+.++.++.  +..  .+..+++|++|++++|.+.. .|..+  ..+++|++|++++|.++.. +    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            356677777666542  111  12234567778887777763 34455  6777778888877777632 2    22345


Q ss_pred             cCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCC---C--CcccccCCCCcEEEecCCcceeechh---hhccc
Q 007962          113 ATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITS---L--PEDLADCSKMSKLDVEGNKLTVLSNN---LIASW  183 (583)
Q Consensus       113 l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~---l--~~~l~~l~~L~~L~l~~~~i~~~~~~---~~~~~  183 (583)
                      +++|++|++++|.+..++ ..+..+++|++|++++|.+..   +  +..+..+++|++|++++|.+..++..   .+..+
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence            777777777777776554 466777777777777776542   2  12235667777777777777644432   24566


Q ss_pred             ccCcEEEcCCCcCCcc-chhhcCC---ccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEE
Q 007962          184 TMLTELIASKNLLNGM-PETIGSL---SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD  259 (583)
Q Consensus       184 ~~L~~L~l~~~~~~~~-~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~  259 (583)
                      ++|++|++++|.+... |..+..+   ++|++|++++|.+..+|..+.  ++|+.|++++|.+..+|. +..+++|+.|+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~  300 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLT  300 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEE
Confidence            7777777777777654 5444444   577777777777776666553  677777777777776544 56667777777


Q ss_pred             ccCCccc
Q 007962          260 LHSNQLK  266 (583)
Q Consensus       260 l~~~~l~  266 (583)
                      +++|.++
T Consensus       301 L~~N~l~  307 (310)
T 4glp_A          301 LDGNPFL  307 (310)
T ss_dssp             CSSTTTS
T ss_pred             CcCCCCC
Confidence            7777655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2e-19  Score=174.40  Aligned_cols=234  Identities=20%  Similarity=0.238  Sum_probs=180.1

Q ss_pred             hhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCc-ccch-h
Q 007962           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-A   86 (583)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~-~l~~-~   86 (583)
                      .-++++|+++++++||..++               +++++|+|++|+|+.+|. .|+++++|++|+|++|.+. .++. +
T Consensus        10 ~~~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~   74 (350)
T 4ay9_X           10 SNRVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV   74 (350)
T ss_dssp             ETTEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred             eCCEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence            34689999999999999774               479999999999999985 6999999999999999975 4554 7


Q ss_pred             hhCCCCccE-EEccCCccccCC-ccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccc-cccCCCCc-ccccC-C
Q 007962           87 IGELHMLKS-LDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-S  160 (583)
Q Consensus        87 ~~~~~~L~~-L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~l~~-~l~~l-~  160 (583)
                      |.++++|++ +.+..|.++.++ ..|..+++|++|++++|.+..++. .+....++..+++.+ +.+..++. .+..+ .
T Consensus        75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~  154 (350)
T 4ay9_X           75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF  154 (350)
T ss_dssp             BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS
T ss_pred             hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch
Confidence            889998876 555667888764 568899999999999999987764 445666788888865 45665543 34444 4


Q ss_pred             CCcEEEecCCcceeechhhhcccccCcEEEcCC-CcCCccch-hhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcC
Q 007962          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASK-NLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG  238 (583)
Q Consensus       161 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  238 (583)
                      .++.|++++|++..++..+|. ..+|+++.+.+ +.++.+|. .+..+++|+.|++++|.++.+|..  .+.+|+.|.+.
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l  231 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRAR  231 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECT
T ss_pred             hhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhc
Confidence            688899999999988877554 46788888874 66777775 467888899999999988888753  35567777765


Q ss_pred             CC-CCccCchhhhCCCCCCEEEccC
Q 007962          239 NN-ALSALPAELGKLSKLGTLDLHS  262 (583)
Q Consensus       239 ~~-~~~~l~~~l~~~~~L~~L~l~~  262 (583)
                      ++ .++.+| .+..+++|+.+++.+
T Consensus       232 ~~~~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          232 STYNLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred             cCCCcCcCC-CchhCcChhhCcCCC
Confidence            54 445665 477788888888764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=2.7e-19  Score=168.35  Aligned_cols=169  Identities=22%  Similarity=0.346  Sum_probs=102.6

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +++|+.|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence            456677777777666664 36666677777777776666654 6666677777777666665443 66666666666666


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      |.+..+ ..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+..+..  +..+++|+.|++++|.++.++. +
T Consensus       122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l  196 (291)
T 1h6t_A          122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L  196 (291)
T ss_dssp             SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred             CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence            666655 3455666666666666666655 455566666666666666555543  5555555555555555555432 4


Q ss_pred             cCCccccEEEccCCcCc
Q 007962          204 GSLSRLIRLDLHQNRIL  220 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~~~  220 (583)
                      ..+++|+.|++++|.+.
T Consensus       197 ~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          197 AGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TTCTTCSEEEEEEEEEE
T ss_pred             ccCCCCCEEECcCCccc
Confidence            45555555555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=3.6e-19  Score=167.47  Aligned_cols=172  Identities=29%  Similarity=0.373  Sum_probs=100.1

Q ss_pred             cCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  458 (583)
                      ++.|+.|++++|.+..++. +..+++|++|++++|.+++...  +..+++|+.|++++|.++.++.  +..+++|++|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence            4556666666666655542 5556666666666666665544  4566666666666666655432  555666666666


Q ss_pred             CCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCC
Q 007962          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP  538 (583)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~  538 (583)
                      ++|.+...  ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +..+++|++|++++|+|+.++.
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~  195 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA  195 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence            66665553  2355566666666666666655 345556666666666666665543 5566666666666666665543


Q ss_pred             CccccccccceeeccCCCCccch
Q 007962          539 ELGLLEPSLQALRLDGNPLRSIR  561 (583)
Q Consensus       539 ~~~~~~~~L~~L~l~~~~~~~~~  561 (583)
                       +. .+++|+.|++++|+++..+
T Consensus       196 -l~-~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          196 -LA-GLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             -GT-TCTTCSEEEEEEEEEECCC
T ss_pred             -hc-cCCCCCEEECcCCcccCCc
Confidence             22 2356666666666654433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=7.4e-19  Score=178.89  Aligned_cols=187  Identities=29%  Similarity=0.413  Sum_probs=162.7

Q ss_pred             cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (583)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (583)
                      .+++.++++++.+..++..+  .++|++|++++|.++.+|   ..+++|++|++++|.++.++.  +..  +|+.|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence            47899999999999888766  378999999999999988   457999999999999998765  444  999999999


Q ss_pred             CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh
Q 007962          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG  516 (583)
Q Consensus       437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~  516 (583)
                      |.++.++.    .+++|+.|++++|.++.+..    .+++|++|++++|.++.+|. +.  ++|+.|++++|.++.+|. 
T Consensus       130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-  197 (571)
T 3cvr_A          130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-  197 (571)
T ss_dssp             SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred             CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence            99999876    58999999999999987543    67899999999999999988 54  999999999999999987 


Q ss_pred             hcCCCCC-------CEEeCCCCCCCcCCCCccccccccceeeccCCCCccchhHHhcc
Q 007962          517 FKNLTSL-------TELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR  567 (583)
Q Consensus       517 l~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  567 (583)
                      +..  +|       ++|++++|+|+.+|..++.+ ++|+.|++++|+++...+..+..
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             CC----------CCEEEECCSSCCCCCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHH
T ss_pred             HHH--hhhcccccceEEecCCCcceecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHH
Confidence            544  77       99999999999999988874 99999999999998877766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=4.5e-20  Score=175.95  Aligned_cols=199  Identities=24%  Similarity=0.279  Sum_probs=148.0

Q ss_pred             cccceeecCCCCCcc-CChhh--hccCCccEEEcCCCCCCcC-C----ccccCCCCCcEEEccCCCCCCCChhhhhcCCC
Q 007962          357 VTSKELSLEGMNLSA-IPSEI--WEAGEITKLDLSRNSIQEL-P----PELSSCASLQTLILSRNKIKDWPDAILTSLSS  428 (583)
Q Consensus       357 ~~l~~l~l~~~~~~~-~~~~~--~~~~~L~~L~l~~~~l~~l-~----~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~  428 (583)
                      .+++.+++++|.+.. .+..+  ..+++|++|++++|.++.. +    ..+..+++|++|++++|.+.......+..+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            358888888888763 44444  6678888888888887762 2    22346888888888888888887777788888


Q ss_pred             CcEEecCCCCCcc---CC-CCccCCCCcccEEeCCCCccCCCCCC---CCCCCCccceEeccccccccc-ccchhcc---
Q 007962          429 LSCLKLDNNPLRQ---VP-SDGFKDIPMLQILDLSYNIASLPENP---PFSSLPHLQELYLRRMQLREA-PTDILRL---  497 (583)
Q Consensus       429 L~~L~l~~~~~~~---~~-~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~l~~~-~~~~~~~---  497 (583)
                      |++|++++|++.+   ++ ...+..+++|++|++++|.++.....   .+..+++|++|++++|.++.. |..+..+   
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS  250 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence            8888888888654   22 22246788888888888887643221   135678888888888888866 6666665   


Q ss_pred             CcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          498 QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       498 ~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      ++|++|++++|.++.+|..+.  ++|++|++++|+|+.+|. . ..+++|+.|++++|+++.
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~-~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-P-DELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-T-TSCCCCSCEECSSTTTSC
T ss_pred             CcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-h-hhCCCccEEECcCCCCCC
Confidence            688888888888888877664  788888888888887755 2 333888888888888865

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=8.6e-19  Score=178.39  Aligned_cols=186  Identities=31%  Similarity=0.433  Sum_probs=140.3

Q ss_pred             CccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCc
Q 007962           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (583)
Q Consensus        46 ~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~  125 (583)
                      +++.|++++|.++.+|..+  +++|++|+|++|.++.+|   ..+++|++|++++|.++.+|. +.+  +|++|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            6788888888887777644  367888888888877776   456788888888887777776 554  78888888888


Q ss_pred             CCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcC
Q 007962          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (583)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (583)
                      ++.+|.   .+++|++|++++|.+..+|.   .+++|++|++++|.+..++.  +.  ++|+.|++++|.++.+|. +..
T Consensus       132 l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~-~~~  200 (571)
T 3cvr_A          132 LTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLPA-VPV  200 (571)
T ss_dssp             CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCCC-CC-
T ss_pred             CCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchhh-HHH
Confidence            877766   56788888888888877765   56788888888888777665  43  778888888888887776 443


Q ss_pred             Cccc-------cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc-cCchhhhCC
Q 007962          206 LSRL-------IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKL  252 (583)
Q Consensus       206 ~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~  252 (583)
                        +|       +.|++++|.+..+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus       201 --~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          201 --RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             ---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             --hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence              66       8899999988888888888889999999999887 445555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=9.1e-20  Score=176.47  Aligned_cols=246  Identities=15%  Similarity=0.197  Sum_probs=186.4

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcc--cchh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA   86 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~--l~~~   86 (583)
                      +..+.+|++++++.  |..+ ....          .++++.|+++++.++..+..+.++++|++|++++|.+..  ++..
T Consensus        47 ~~~~~l~l~~~~~~--~~~~-~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVT-GRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHH-HHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             hhheeeccccccCC--HHHH-Hhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            34788999998876  2322 2110          168999999999998776667789999999999998873  6778


Q ss_pred             hhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCC-cCC--cCCcccccCCCCCEEEcccc-ccCC--CCcccccC
Q 007962           87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC  159 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~-~~~--~~~~~~~~~~~L~~L~l~~~-~~~~--l~~~l~~l  159 (583)
                      +..+++|++|++++|.++ ..+..+..+++|++|++++| .++  .++..+..+++|++|++++| .+..  ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            899999999999999887 56677888999999999999 576  36667888999999999999 8873  56678889


Q ss_pred             C-CCcEEEecCCc--ce-eechhhhcccccCcEEEcCCCc-CC-ccchhhcCCccccEEEccCCc-Cc-ccCCCCcCCCC
Q 007962          160 S-KMSKLDVEGNK--LT-VLSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCS  231 (583)
Q Consensus       160 ~-~L~~L~l~~~~--i~-~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~  231 (583)
                      + +|++|++++|.  +. ......+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +. .....+..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            9 99999999994  43 1222347788999999999998 43 456678888999999999985 22 11235778999


Q ss_pred             CcEEEcCCCCCccCchhhhCC-CCCCEEEccCCccccccc
Q 007962          232 LAEFYMGNNALSALPAELGKL-SKLGTLDLHSNQLKEYCV  270 (583)
Q Consensus       232 L~~L~l~~~~~~~l~~~l~~~-~~L~~L~l~~~~l~~~~~  270 (583)
                      |+.|++++| +..  ..+..+ ..++.|++++|.++....
T Consensus       274 L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          274 LKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             CCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccC
Confidence            999999999 441  122222 235555688888876444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=2.1e-19  Score=175.23  Aligned_cols=250  Identities=19%  Similarity=0.193  Sum_probs=173.3

Q ss_pred             EEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccc-----hhhhCCC-CccEEEccCCccccC-Ccccccc-----Cc
Q 007962           49 KLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELP-----AAIGELH-MLKSLDVSFNSIMKI-PDEIGSA-----TA  115 (583)
Q Consensus        49 ~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~-----~~~~~~~-~L~~L~L~~~~l~~l-~~~~~~l-----~~  115 (583)
                      +++++++.++.. |..+...++|++|++++|.++..+     .++..++ +|++|++++|.++.. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            468899999854 555666667999999999998765     5788888 999999999998854 4445554     89


Q ss_pred             ccEEEcCCCcCCcCCc-----ccccC-CCCCEEEccccccCCCCc-----cccc-CCCCcEEEecCCcceeechhh----
Q 007962          116 LVKFDCSSNQLKELPS-----SLGRC-LNLSDFKASNNCITSLPE-----DLAD-CSKMSKLDVEGNKLTVLSNNL----  179 (583)
Q Consensus       116 L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~~~~l~~-----~l~~-l~~L~~L~l~~~~i~~~~~~~----  179 (583)
                      |++|++++|.++..+.     .+..+ ++|++|++++|.+...+.     .+.. .++|++|++++|.+.......    
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            9999999999885542     24455 799999999998875542     2334 468999999999888544433    


Q ss_pred             hcccc-cCcEEEcCCCcCCccc-----hhhcCC-ccccEEEccCCcCcc-----cCCCCcC-CCCCcEEEcCCCCCccCc
Q 007962          180 IASWT-MLTELIASKNLLNGMP-----ETIGSL-SRLIRLDLHQNRILS-----IPSSISG-CCSLAEFYMGNNALSALP  246 (583)
Q Consensus       180 ~~~~~-~L~~L~l~~~~~~~~~-----~~l~~~-~~L~~L~l~~~~~~~-----~~~~~~~-~~~L~~L~l~~~~~~~l~  246 (583)
                      +...+ +|++|++++|.++...     ..+..+ ++|+.|++++|.+..     ++..+.. .++|++|++++|.+...+
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence            33444 8888888888875433     234445 488888888887775     4444544 457888888887777432


Q ss_pred             -----hhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcccCCCcEEecCCCcccc
Q 007962          247 -----AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (583)
Q Consensus       247 -----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  312 (583)
                           ..+..+++|++|++++|.+..+.....              ..+...+.++++|+++++++|.+..
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~--------------~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC--------------KALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH--------------HHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCHHHH--------------HHHHHHhccCCceEEEecCCCcCCC
Confidence                 234566777777777776543322211              1122345667788888888887643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.3e-18  Score=168.73  Aligned_cols=205  Identities=20%  Similarity=0.240  Sum_probs=115.5

Q ss_pred             ceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCC-CChhhhhcCCCCcE-EecCC
Q 007962          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSC-LKLDN  436 (583)
Q Consensus       360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~-L~l~~  436 (583)
                      ++++.++++++.+|..+  .+++++|++++|.++.+|. .|.++++|++|++++|.+.+ ++...|.+++++.+ +.+.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            44555666666666554  3456666666666666654 45666666666666666543 34445566666554 33344


Q ss_pred             CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccc-cccccccc-hhcc-CcccEEeCCCCcCCcc
Q 007962          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM-QLREAPTD-ILRL-QQLRILDLSQNSLQSI  513 (583)
Q Consensus       437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~-~~~~-~~L~~L~l~~n~l~~l  513 (583)
                      |+++.++...|.++++|++|++++|.+.......+....++..+++.++ .+..++.. +..+ ..++.|++++|.++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            6666666666666666666666666665555444444455555555443 45544432 2222 2455566666666555


Q ss_pred             chhhcCCCCCCEEeCCC-CCCCcCCCCccccccccceeeccCCCCccchhHHhc
Q 007962          514 PEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD  566 (583)
Q Consensus       514 ~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  566 (583)
                      |......++|++|++.+ |.++.+|+.++..+++|+.|++++|+++.++...+.
T Consensus       170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~  223 (350)
T 4ay9_X          170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  223 (350)
T ss_dssp             CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT
T ss_pred             ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc
Confidence            55444445556666553 355555555554445666666666666555554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=4.3e-18  Score=152.01  Aligned_cols=175  Identities=27%  Similarity=0.385  Sum_probs=107.0

Q ss_pred             ceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC
Q 007962          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP  438 (583)
Q Consensus       360 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~  438 (583)
                      +.+...++.+..++..+  .+++++|++++|.++.++. .+..+++|++|++++|.+..+....|..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            44555555555555443  3466666666666666544 35566666666666666666665556666666666666666


Q ss_pred             CccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchhh
Q 007962          439 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGF  517 (583)
Q Consensus       439 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~l  517 (583)
                      ++.++...|.++++|++|++++|.++......+..+++|++|++++|.++.++.. +..+++|++|++++|.+.      
T Consensus        88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------  161 (208)
T 2o6s_A           88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------  161 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred             CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------
Confidence            6666655566666666666666666665555566666666666666666655543 445666666666666544      


Q ss_pred             cCCCCCCEEeCCCCCCC-cCCCCccc
Q 007962          518 KNLTSLTELDLSDNNIS-ALPPELGL  542 (583)
Q Consensus       518 ~~~~~L~~L~l~~~~l~-~~~~~~~~  542 (583)
                      ..+++|++|++++|+++ .+|..+..
T Consensus       162 ~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          162 CTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             cCCCCHHHHHHHHHhCCceeeccCcc
Confidence            23456666666666555 45544433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=1.7e-18  Score=168.49  Aligned_cols=174  Identities=30%  Similarity=0.369  Sum_probs=135.7

Q ss_pred             cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhh-cCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      +.++++++.++.+|..+.  +.++.|++++|.++.+....|. .+++|+.|++++|.+..++...|.++++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            567777777777776543  4578888888888877776666 7888888888888888887777888888888888888


Q ss_pred             ccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccchhh----cCCCCCCEEeCCCCCCCcC
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF----KNLTSLTELDLSDNNISAL  536 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~~~l----~~~~~L~~L~l~~~~l~~~  536 (583)
                      .+.......+..+++|++|+|++|.++.+ +..+..+++|+.|++++|.++.+|..+    ..+++|+.|++++|+|+.+
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            88877777788888888888888888866 456677888888888888888887653    5688899999999988888


Q ss_pred             CCCccccccc--cceeeccCCCCc
Q 007962          537 PPELGLLEPS--LQALRLDGNPLR  558 (583)
Q Consensus       537 ~~~~~~~~~~--L~~L~l~~~~~~  558 (583)
                      +...+...+.  ++.|++.+|++.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            7654443344  478999999886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=1.3e-17  Score=150.89  Aligned_cols=153  Identities=33%  Similarity=0.447  Sum_probs=132.1

Q ss_pred             CccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCC
Q 007962          381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY  460 (583)
Q Consensus       381 ~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  460 (583)
                      +.+.++.+++.++.+|..+.  ++|++|++++|.+.......|..+++|+.|++++|.+..++...|.++++|++|++++
T Consensus        20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            45778888888888887554  8899999999999988887888999999999999999888888788999999999999


Q ss_pred             CccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCCCCc
Q 007962          461 NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISA  535 (583)
Q Consensus       461 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~l~~  535 (583)
                      |.++......+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|++|++++|++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            9998887777888999999999999999888888888999999999999887764 47888899999999987763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3.9e-18  Score=175.72  Aligned_cols=171  Identities=23%  Similarity=0.339  Sum_probs=130.3

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +++|+.|+++++.+..++ .+..+++|+.|+|++|.+..++. +..+++|++|+|++|.+..++ .+..+++|++|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            567888888888887775 57778888888888888877765 778888888888888777665 577788888888888


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      |.+..+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+.+  +..+++|+.|++++|.+..++ .+
T Consensus       119 N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l  193 (605)
T 1m9s_A          119 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  193 (605)
T ss_dssp             SCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence            887776 3577778888888888877776 567777888888888887777655  777777888888877777664 46


Q ss_pred             cCCccccEEEccCCcCccc
Q 007962          204 GSLSRLIRLDLHQNRILSI  222 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~  222 (583)
                      ..+++|+.|++++|.+...
T Consensus       194 ~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TTCTTCSEEECCSEEEECC
T ss_pred             ccCCCCCEEEccCCcCcCC
Confidence            6777777777777776644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=3.9e-18  Score=175.71  Aligned_cols=172  Identities=26%  Similarity=0.365  Sum_probs=103.4

Q ss_pred             cccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962          357 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (583)
Q Consensus       357 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (583)
                      .+++.|.++++.+..++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.+....  .+..+++|+.|+|++
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTT
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecC
Confidence            34556666666665554 34556666666666666666554 556666666666666665543  245666666666666


Q ss_pred             CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchh
Q 007962          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG  516 (583)
Q Consensus       437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~  516 (583)
                      |.+..++  .+..+++|+.|++++|.++..  ..+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++.++ .
T Consensus       119 N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~  192 (605)
T 1m9s_A          119 NGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A  192 (605)
T ss_dssp             SCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred             CCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence            6666542  255666666666666666554  345566666666666666665544 556666666666666666553 3


Q ss_pred             hcCCCCCCEEeCCCCCCCcCCC
Q 007962          517 FKNLTSLTELDLSDNNISALPP  538 (583)
Q Consensus       517 l~~~~~L~~L~l~~~~l~~~~~  538 (583)
                      +..+++|+.|++++|++...|.
T Consensus       193 l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          193 LAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             GTTCTTCSEEECCSEEEECCCC
T ss_pred             HccCCCCCEEEccCCcCcCCcc
Confidence            5566666666666666554444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=8.9e-18  Score=149.97  Aligned_cols=170  Identities=32%  Similarity=0.405  Sum_probs=147.2

Q ss_pred             ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      -+.++.+++.++.+|..+  .++|++|++++|.+.......|..+++|++|++++|+++.++...|..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            467888888888888654  468999999999999988888899999999999999999998888899999999999999


Q ss_pred             ccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchh-hcCCCCCCEEeCCCCCCCcCCCC
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPE  539 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~  539 (583)
                      .++......+..+++|++|++++|.++.++.. +..+++|++|++++|.++.++.. +..+++|++|++++|.+..    
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----  162 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----  162 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence            99988877889999999999999999988765 57899999999999999987655 7889999999999997653    


Q ss_pred             ccccccccceeeccCCCCccc
Q 007962          540 LGLLEPSLQALRLDGNPLRSI  560 (583)
Q Consensus       540 ~~~~~~~L~~L~l~~~~~~~~  560 (583)
                         .++.|+.|++++|.++..
T Consensus       163 ---~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTT
T ss_pred             ---CCCCHHHHHHHHHhCCce
Confidence               236788888888877643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=2.1e-17  Score=149.56  Aligned_cols=152  Identities=27%  Similarity=0.281  Sum_probs=138.5

Q ss_pred             CcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccc
Q 007962          405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR  484 (583)
Q Consensus       405 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  484 (583)
                      -+.++++++.++.++..   -.++|+.|++++|.+..+....|.++++|++|++++|.+.......+..+++|+.|++++
T Consensus        21 ~~~v~c~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcCccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            56799999998888763   348999999999999999888899999999999999999988888899999999999999


Q ss_pred             ccccccccc-hhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          485 MQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       485 ~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      |.++.++.. +..+++|++|++++|.++.+|..+..+++|++|++++|+|+.+++..+..+++|+.|++++|++..
T Consensus        98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            999988765 468999999999999999999999999999999999999999998777766999999999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=2.6e-18  Score=151.77  Aligned_cols=151  Identities=19%  Similarity=0.203  Sum_probs=89.0

Q ss_pred             CCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceE
Q 007962          401 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQEL  480 (583)
Q Consensus       401 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  480 (583)
                      .+++|+.|++++|.+.+++  .+..+++|++|++++|.+..++  .+..+++|++|++++|.++...+..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            3445555555555555443  2445555555555555444332  25555666666666666555444556666666666


Q ss_pred             ecccccccc-cccchhccCcccEEeCCCCc-CCccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962          481 YLRRMQLRE-APTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       481 ~l~~~~l~~-~~~~~~~~~~L~~L~l~~n~-l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~  558 (583)
                      ++++|.++. .+..+..+++|++|++++|. ++.+| .+..+++|++|++++|+++.++ .+. .+++|+.|++++|+|+
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~-~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIE-DFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGG-GCSSCCEEEECBC---
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-Hhc-cCCCCCEEEeeCcccC
Confidence            666666663 45556667777777777776 66665 5667777777777777777665 222 2367777777777764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=6.8e-18  Score=156.07  Aligned_cols=168  Identities=20%  Similarity=0.252  Sum_probs=83.2

Q ss_pred             CccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCc
Q 007962           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (583)
Q Consensus        46 ~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~  125 (583)
                      +++.++++++.+++++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus        20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence            3444444444444443 3444444444444444444443 34444445555554444444433 4444455555555554


Q ss_pred             CCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcC
Q 007962          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (583)
Q Consensus       126 ~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  205 (583)
                      ++.++....  ++|++|++++|.+..++ .+..+++|++|++++|.+..++  .+..+++|+.|++++|.+..+ ..+..
T Consensus        97 l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-~~l~~  170 (263)
T 1xeu_A           97 LKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT-GGLTR  170 (263)
T ss_dssp             CSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred             cCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-HHhcc
Confidence            444432221  45555555555555442 3555555555555555555543  255555555555555555544 44555


Q ss_pred             CccccEEEccCCcCccc
Q 007962          206 LSRLIRLDLHQNRILSI  222 (583)
Q Consensus       206 ~~~L~~L~l~~~~~~~~  222 (583)
                      +++|+.|++++|.+...
T Consensus       171 l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          171 LKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCCCEEEEEEEEEECC
T ss_pred             CCCCCEEeCCCCcccCC
Confidence            56666666666655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=3.6e-17  Score=146.90  Aligned_cols=148  Identities=25%  Similarity=0.377  Sum_probs=74.8

Q ss_pred             cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCc
Q 007962          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (583)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  462 (583)
                      +.++.+++.++.+|..+.  ++++.|++++|.+..+....|..+++|+.|++++|.+..+....|.++++|++|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            456666666666655433  456666666665555555445555555555555555555544445555555555555555


Q ss_pred             cCCCCCCCCCCCCccceEecccccccccc-cchhccCcccEEeCCCCcCCccch-hhcCCCCCCEEeCCCCC
Q 007962          463 ASLPENPPFSSLPHLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNN  532 (583)
Q Consensus       463 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~  532 (583)
                      ++......+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.++. .+..+++|++|++++|+
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            55444444444555555555555444332 223344444444444444443332 23444444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=2.2e-18  Score=159.37  Aligned_cols=171  Identities=24%  Similarity=0.279  Sum_probs=133.9

Q ss_pred             HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhh
Q 007962            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI   87 (583)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~   87 (583)
                      ...+..++++++++++++. + .            ++++|++|++++|.++.++ .+..+++|++|++++|.++.++. +
T Consensus        18 l~~l~~l~l~~~~i~~~~~-~-~------------~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l   81 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVS-Q-K------------ELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L   81 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEEC-H-H------------HHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             HHHHHHHHhcCCCcccccc-h-h------------hcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h
Confidence            3456677788888887773 2 1            1578888888888888886 67888888888888888888766 8


Q ss_pred             hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEe
Q 007962           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l  167 (583)
                      ..+++|++|++++|.++.++....  ++|++|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++
T Consensus        82 ~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL  157 (263)
T ss_dssp             TTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred             ccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence            888888888888888887765333  88888888888888774 5778888888888888888775 6788888888888


Q ss_pred             cCCcceeechhhhcccccCcEEEcCCCcCCccc
Q 007962          168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (583)
Q Consensus       168 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~  200 (583)
                      ++|.+..+  ..+..+++|+.|++++|.+...+
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            88888877  34788888888888888776544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=8.7e-18  Score=148.40  Aligned_cols=154  Identities=14%  Similarity=0.267  Sum_probs=135.8

Q ss_pred             hccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEE
Q 007962          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (583)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  456 (583)
                      ..+++|++|++++|.+.+++ .+..+++|++|++++|.+....  .+..+++|++|++++|.++......+.++++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            45788999999999999888 6889999999999999877664  47899999999999999998656669999999999


Q ss_pred             eCCCCccCCCCCCCCCCCCccceEeccccc-ccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCc
Q 007962          457 DLSYNIASLPENPPFSSLPHLQELYLRRMQ-LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA  535 (583)
Q Consensus       457 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~  535 (583)
                      ++++|.++...+..+..+++|++|++++|. ++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+|+.
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence            999999988666778899999999999997 88886 6889999999999999999887 78899999999999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=8.8e-18  Score=163.49  Aligned_cols=172  Identities=26%  Similarity=0.287  Sum_probs=146.5

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhC-CCCCCcEEEcCCCCCcccch-hh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLR-NLPLLTVLNVSHNKLSELPA-AI   87 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~-~~~~L~~L~L~~~~l~~l~~-~~   87 (583)
                      ..+++|++++++.+|..++               ..++.|+|++|.++.++. .|. ++++|++|+|++|.++.++. +|
T Consensus        20 ~~~l~c~~~~l~~iP~~~~---------------~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~   84 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLP---------------SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF   84 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCC---------------TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCEEEeCCCCcCccCccCC---------------CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence            4689999999999998774               368999999999998875 466 89999999999999998864 79


Q ss_pred             hCCCCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcC-CcccccCCCCCEEEccccccCCCCccc----ccCCC
Q 007962           88 GELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDL----ADCSK  161 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~l----~~l~~  161 (583)
                      ..+++|++|+|++|.++.++. .|..+++|++|++++|.+..+ +..+..+++|++|++++|.+..++..+    ..+++
T Consensus        85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~  164 (361)
T 2xot_A           85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK  164 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred             cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence            999999999999999987765 588899999999999999876 467889999999999999999887654    57899


Q ss_pred             CcEEEecCCcceeechhhhccccc--CcEEEcCCCcCC
Q 007962          162 MSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLN  197 (583)
Q Consensus       162 L~~L~l~~~~i~~~~~~~~~~~~~--L~~L~l~~~~~~  197 (583)
                      |++|++++|.+..++...+..++.  ++.|++.+|.+.
T Consensus       165 L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          165 LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            999999999999888777888776  478888888764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=3.8e-17  Score=146.70  Aligned_cols=151  Identities=26%  Similarity=0.395  Sum_probs=120.7

Q ss_pred             cceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCC
Q 007962          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN  437 (583)
Q Consensus       359 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~  437 (583)
                      -+.++++++.+..+|..+.  +.+++|++++|.++.++. .+..+++|++|++++|.+..+.+..|..+++|++|++++|
T Consensus        13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            3567777888887776553  678888888888887664 6778888888888888888777777788888888888888


Q ss_pred             CCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCC
Q 007962          438 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       438 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~  511 (583)
                      .++.++...|.++++|++|++++|.+....+..+..+++|++|++++|.++.++.. +..+++|++|++++|.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            88888877788888888888888888888777888888888888888888877654 566888888888888765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=6.9e-17  Score=145.04  Aligned_cols=150  Identities=23%  Similarity=0.380  Sum_probs=96.7

Q ss_pred             cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCC-hhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      ++++++++.++.+|..+.  +.+++|++++|.++... ...|..+++|+.|++++|.++.++...|.++++|++|++++|
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            577777777777776443  34577777777777653 344567777777777777777766666677777777777777


Q ss_pred             ccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCcc-chhhcCCCCCCEEeCCCCCCC
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS  534 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~l~  534 (583)
                      .++...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+ |..+..+++|++|++++|++.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            66666555566666666666666666654 34455566666666666666654 445556666666666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=3.6e-17  Score=146.89  Aligned_cols=152  Identities=24%  Similarity=0.308  Sum_probs=127.6

Q ss_pred             ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCC--ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecC
Q 007962          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (583)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  435 (583)
                      ..+.++++++.+..+|..+  ...+++|++++|.++.++  ..+..+++|++|++++|.++.+....|..+++|++|+++
T Consensus        12 ~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3467888888888887755  345788999999888863  347888899999999998888887778889999999999


Q ss_pred             CCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~  511 (583)
                      +|.++.++...|.++++|++|++++|.+....+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            9999888888888899999999999998888888888899999999999988877 667778889999999998776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.70  E-value=5.5e-19  Score=180.99  Aligned_cols=192  Identities=18%  Similarity=0.182  Sum_probs=102.6

Q ss_pred             ccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCC-------------Cc-ccchhhhCCCCccEEE-ccCCccccC
Q 007962           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK-------------LS-ELPAAIGELHMLKSLD-VSFNSIMKI  106 (583)
Q Consensus        42 ~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~-------------l~-~l~~~~~~~~~L~~L~-L~~~~l~~l  106 (583)
                      +.+++|+.|+|++|.++.+|..++++++|+.|+++++.             .. .+|..++.+++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45777888888888888888888888888888876653             11 2234555566666665 443332221


Q ss_pred             Cc------cccc--cCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechh
Q 007962          107 PD------EIGS--ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN  178 (583)
Q Consensus       107 ~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~  178 (583)
                      +.      .+..  ...|+.|++++|.++.+|. ++.+++|++|++++|.+..+|..+..+++|++|++++|.+..    
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~----  500 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN----  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC----
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC----
Confidence            11      0111  1134555555555555443 455555555555555555555455555555555555554444    


Q ss_pred             hhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCccc--CCCCcCCCCCcEEEcCCCCCccCchh----hhCC
Q 007962          179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKL  252 (583)
Q Consensus       179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~l~~~----l~~~  252 (583)
                                          +| .++.+++|+.|++++|.+..+  |..+..+++|+.|++++|.+..+|+.    +..+
T Consensus       501 --------------------lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~l  559 (567)
T 1dce_A          501 --------------------VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML  559 (567)
T ss_dssp             --------------------CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHC
T ss_pred             --------------------Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHC
Confidence                                44 444455555555555555544  44555555555555555555543322    2335


Q ss_pred             CCCCEEE
Q 007962          253 SKLGTLD  259 (583)
Q Consensus       253 ~~L~~L~  259 (583)
                      ++|+.|+
T Consensus       560 p~L~~L~  566 (567)
T 1dce_A          560 PSVSSIL  566 (567)
T ss_dssp             TTCSEEE
T ss_pred             cccCccC
Confidence            6666664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.70  E-value=9.7e-16  Score=151.07  Aligned_cols=329  Identities=12%  Similarity=0.170  Sum_probs=180.4

Q ss_pred             chhhhH-hhCCCCCCcEEEcCCCCCcccch-hhhCCCCccEEEccCCccccCC-ccccccCcccEEEcCCCcCCcC-Ccc
Q 007962           57 IEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL-PSS  132 (583)
Q Consensus        57 i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~-~~~  132 (583)
                      +++|++ +|.+|.+|+.+.+..+ ++.|.+ +|.+|.+|+.+++.++ ++.++ ..|.++++|+.+.+..+ +..+ ..+
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            445542 4566666666666432 444433 5566666666666543 33322 23555555555554432 2222 123


Q ss_pred             cccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCcc-chhhcCCccccE
Q 007962          133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIR  211 (583)
Q Consensus       133 ~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~  211 (583)
                      |..+..++. .........-...|..|++|+.+.+..+ +..+...+|.++.+|+.+.+..+ +..+ ...+..+..|+.
T Consensus       136 F~~~~~~~~-~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~  212 (394)
T 4fs7_A          136 FKGCDFKEI-TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN  212 (394)
T ss_dssp             TTTCCCSEE-ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred             eeccccccc-ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence            444432222 2221111111234666667777766543 45566666777777777766654 2222 234556666666


Q ss_pred             EEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCC
Q 007962          212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP  291 (583)
Q Consensus       212 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~  291 (583)
                      +.+..+.. .+......+..|+.+.+.......-...+..+..++.+.+..+... +.                     .
T Consensus       213 i~~~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~---------------------~  269 (394)
T 4fs7_A          213 MEFPNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IG---------------------G  269 (394)
T ss_dssp             CCCCTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-EC---------------------S
T ss_pred             eecCCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-ee---------------------c
Confidence            66655432 2233344556777777765432222345666777777776554221 11                     1


Q ss_pred             hhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCcc
Q 007962          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (583)
Q Consensus       292 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~  371 (583)
                      ..+..+..++.+......+   +.                                                        
T Consensus       270 ~~F~~~~~l~~~~~~~~~i---~~--------------------------------------------------------  290 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIV---PE--------------------------------------------------------  290 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEE---CT--------------------------------------------------------
T ss_pred             cccccccccceeccCceee---cc--------------------------------------------------------
Confidence            1344555555555433211   10                                                        


Q ss_pred             CChhhhccCCccEEEcCCCCCCcCC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCC
Q 007962          372 IPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (583)
Q Consensus       372 ~~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  450 (583)
                        ..+..+.+|+.+.+.++ ++.++ .+|..|.+|+.+++..+ ++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|
T Consensus       291 --~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C  365 (394)
T 4fs7_A          291 --KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC  365 (394)
T ss_dssp             --TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred             --ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence              12233556677766543 44433 35778888888888643 66677778888888888888765 778888888889


Q ss_pred             CcccEEeCCCCccCCCCCCCCCCCCccceE
Q 007962          451 PMLQILDLSYNIASLPENPPFSSLPHLQEL  480 (583)
Q Consensus       451 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L  480 (583)
                      ++|+.+++..+ +... ..+|..+++|+.+
T Consensus       366 ~~L~~i~lp~~-~~~~-~~~F~~c~~L~~I  393 (394)
T 4fs7_A          366 INLKKVELPKR-LEQY-RYDFEDTTKFKWI  393 (394)
T ss_dssp             TTCCEEEEEGG-GGGG-GGGBCTTCEEEEE
T ss_pred             CCCCEEEECCC-CEEh-hheecCCCCCcEE
Confidence            99998888754 2222 2457778877765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.69  E-value=2.2e-15  Score=148.56  Aligned_cols=118  Identities=15%  Similarity=0.218  Sum_probs=61.4

Q ss_pred             cCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  458 (583)
                      +..++.+......+.+  ..+..+.+|+.+.+.++ +..+...+|.+|.+|+.+++.. .++.+...+|.+|++|+.+++
T Consensus       275 ~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~l  350 (394)
T 4fs7_A          275 CSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINF  350 (394)
T ss_dssp             CTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECC
T ss_pred             ccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEE
Confidence            3444544444332211  23455666666666443 4444555566666666666653 355565566666666666666


Q ss_pred             CCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccE
Q 007962          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRI  502 (583)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~  502 (583)
                      ..+ +..+...+|..|++|+.+.+..+ ++.+...+.+|++|+.
T Consensus       351 p~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          351 PLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKW  392 (394)
T ss_dssp             CTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEE
T ss_pred             Ccc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcE
Confidence            544 44455555666666666665443 2333334444555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=4.9e-18  Score=173.99  Aligned_cols=191  Identities=18%  Similarity=0.187  Sum_probs=151.3

Q ss_pred             HhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCc--------------chhhhHhhCCCCCCcEE
Q 007962            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN--------------IEKLKEDLRNLPLLTVL   73 (583)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~--------------i~~l~~~~~~~~~L~~L   73 (583)
                      ...+..+++++++++.+|..+..             +++|+.|+++++.              ...+|..++++++|+.|
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~-------------l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L  414 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELES-------------CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  414 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHH-------------HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             CccceeccCChhhHHhhHHHHHH-------------HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccC
Confidence            45677899999999999988754             7889999987663              22445678888899999


Q ss_pred             E-cCCCCCcccch------hhhC--CCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEc
Q 007962           74 N-VSHNKLSELPA------AIGE--LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA  144 (583)
Q Consensus        74 ~-L~~~~l~~l~~------~~~~--~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  144 (583)
                      + ++.+.+..++.      .+..  ...|++|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|++|++
T Consensus       415 ~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  493 (567)
T 1dce_A          415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA  493 (567)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred             cchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence            8 66665443322      1111  1369999999999999987 99999999999999999999999999999999999


Q ss_pred             cccccCCCCcccccCCCCcEEEecCCcceeec-hhhhcccccCcEEEcCCCcCCccchhh----cCCccccEEE
Q 007962          145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMPETI----GSLSRLIRLD  213 (583)
Q Consensus       145 ~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L~  213 (583)
                      ++|.+..+| .+..+++|++|++++|.+..+. +..+..+++|+.|++++|.+...+...    ..+++|+.|+
T Consensus       494 s~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          494 SDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            999999987 8999999999999999998885 555888888888888888877655422    2356666664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.65  E-value=1.4e-15  Score=146.02  Aligned_cols=101  Identities=15%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             cCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCc-EEecCCCCCccCCCCccCCCCcccEE
Q 007962          379 AGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQVPSDGFKDIPMLQIL  456 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L  456 (583)
                      +++|+++++++|.++.++. +|.+|.+|+.+++.++ +..+...+|.+|++|+ .+++++ .++.++..+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            4455555555555555443 3555555555555554 4445555555555555 555554 4555555555555555555


Q ss_pred             eCCCCccCCCCCCCCCCCCccceEe
Q 007962          457 DLSYNIASLPENPPFSSLPHLQELY  481 (583)
Q Consensus       457 ~l~~~~~~~~~~~~~~~l~~L~~L~  481 (583)
                      +++++.+..+...+|..+++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            5555555555555555555555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6.2e-16  Score=132.74  Aligned_cols=134  Identities=24%  Similarity=0.215  Sum_probs=95.9

Q ss_pred             CCCCcEEecCCCCCc--cCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccc-cccchhccCcccE
Q 007962          426 LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI  502 (583)
Q Consensus       426 l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~L~~  502 (583)
                      .++|+.|++++|.++  .++.. +..+++|++|++++|.+...  ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            356777777777766  44433 56677777777777777665  556777788888888887776 5555556788888


Q ss_pred             EeCCCCcCCccc--hhhcCCCCCCEEeCCCCCCCcCCC---CccccccccceeeccCCCCccchh
Q 007962          503 LDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDGNPLRSIRR  562 (583)
Q Consensus       503 L~l~~n~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~  562 (583)
                      |++++|.++.+|  ..+..+++|++|++++|+++.+++   ..+..+++|+.|++++|.+.+++.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            888888887765  567778888888888888887776   334444788888888888776653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=5.4e-16  Score=148.91  Aligned_cols=79  Identities=14%  Similarity=0.206  Sum_probs=69.9

Q ss_pred             ccCCccEEEcCCCCCCcCCc-cccCCCCCc-EEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccE
Q 007962          378 EAGEITKLDLSRNSIQELPP-ELSSCASLQ-TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI  455 (583)
Q Consensus       378 ~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~-~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  455 (583)
                      .+.+|++++++++ ++.++. +|.+|++|+ .+++.+ .++.+...+|.+|++|+.+++.++.++.++..+|.+|++|+.
T Consensus       248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred             CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence            4778999999887 666654 689999999 999988 788888889999999999999999999999999999999999


Q ss_pred             EeC
Q 007962          456 LDL  458 (583)
Q Consensus       456 L~l  458 (583)
                      ++.
T Consensus       326 ly~  328 (329)
T 3sb4_A          326 IYK  328 (329)
T ss_dssp             EEC
T ss_pred             hcc
Confidence            874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.2e-15  Score=130.88  Aligned_cols=133  Identities=18%  Similarity=0.191  Sum_probs=71.0

Q ss_pred             CCCCcEEEcCCCCCc--ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCc-CCcccccCCCCCEEE
Q 007962           67 LPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFK  143 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~  143 (583)
                      .++|++|++++|.+.  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            355555555555555  4555555555555555555555544 445555555555555555554 444444455555555


Q ss_pred             ccccccCCCC--cccccCCCCcEEEecCCcceeech---hhhcccccCcEEEcCCCcCCccc
Q 007962          144 ASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGMP  200 (583)
Q Consensus       144 l~~~~~~~l~--~~l~~l~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l~~~~~~~~~  200 (583)
                      +++|.+..++  ..+..+++|++|++++|.+..++.   ..+..+++|+.|++++|....+|
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            5555555543  445555555555555555554443   33445555555555555444443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=2.4e-15  Score=126.12  Aligned_cols=126  Identities=22%  Similarity=0.209  Sum_probs=100.9

Q ss_pred             CCCCcEEecCCCCCc--cCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccc-cccchhccCcccE
Q 007962          426 LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI  502 (583)
Q Consensus       426 l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~L~~  502 (583)
                      .++|+.|++++|.++  .++. .+..+++|++|++++|.+...  ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            467888888888877  4544 467788888888888888776  567888889999999998887 7766677899999


Q ss_pred             EeCCCCcCCccc--hhhcCCCCCCEEeCCCCCCCcCCC---CccccccccceeeccC
Q 007962          503 LDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDG  554 (583)
Q Consensus       503 L~l~~n~l~~l~--~~l~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~L~~L~l~~  554 (583)
                      |++++|.++.++  ..+..+++|++|++++|+++.+++   ..+..+++|+.|++++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999998765  678889999999999999988877   4445558899988864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=9.8e-16  Score=132.45  Aligned_cols=135  Identities=22%  Similarity=0.234  Sum_probs=94.0

Q ss_pred             CCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccc-cccCcc
Q 007962           38 GDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATAL  116 (583)
Q Consensus        38 ~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L  116 (583)
                      ...+.++.+|+.|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.++.+|..+ ..+++|
T Consensus        12 ~~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           12 AAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HHhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            3445567788888888888877754333344788888888877776 56777778888888887777666544 677777


Q ss_pred             cEEEcCCCcCCcCCc--ccccCCCCCEEEccccccCCCCcc----cccCCCCcEEEecCCcce
Q 007962          117 VKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLT  173 (583)
Q Consensus       117 ~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~----l~~l~~L~~L~l~~~~i~  173 (583)
                      ++|++++|.++.++.  .+..+++|++|++++|.+..++..    +..+++|++|+++++...
T Consensus        91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777777776665  666777777777777777666553    666666666666666544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.60  E-value=1.2e-15  Score=128.13  Aligned_cols=122  Identities=23%  Similarity=0.297  Sum_probs=69.4

Q ss_pred             cCccEEEcCCCcch--hhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCcccc-CCccccccCcccEEEc
Q 007962           45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC  121 (583)
Q Consensus        45 ~~L~~L~ls~~~i~--~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~-l~~~~~~l~~L~~L~l  121 (583)
                      ++++.|++++|.++  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.++. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45666666666666  5555556666666666666666655 555566666666666666554 4444445556666666


Q ss_pred             CCCcCCcCC--cccccCCCCCEEEccccccCCCCc----ccccCCCCcEEEe
Q 007962          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDV  167 (583)
Q Consensus       122 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~l  167 (583)
                      ++|.++.++  ..+..+++|++|++++|.+..++.    .+..+++|++|++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            666555443  445555555555555555554433    3444555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=5.9e-16  Score=163.79  Aligned_cols=195  Identities=20%  Similarity=0.266  Sum_probs=107.8

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~   88 (583)
                      +.+..++++++.+..++..+..... +       .--.+..++++.+.+...++.|..+++|+.|+|++|.+..++..+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~-L-------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKK-L-------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF  244 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred             CccceEEeeCCCCCcchhhHhhcCc-c-------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence            3466777777777776655432100 0       0012333344445555455678888888888888888888887777


Q ss_pred             CCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEec
Q 007962           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~  168 (583)
                      .+++|++|+|++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus       245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred             CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcceeechhhhccccc-CcEEEcCCCcCCc-cchhhcCCccccEEEccCC
Q 007962          169 GNKLTVLSNNLIASWTM-LTELIASKNLLNG-MPETIGSLSRLIRLDLHQN  217 (583)
Q Consensus       169 ~~~i~~~~~~~~~~~~~-L~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~  217 (583)
                      +|.+.......+..... ...+++++|.+.. +|      ..|+.|+++.+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            88888665554544322 2235666666542 22      34555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=5.3e-15  Score=129.52  Aligned_cols=121  Identities=23%  Similarity=0.382  Sum_probs=73.3

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccch-hhhCC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGEL   90 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~~   90 (583)
                      .+++|++++++++|..++               +++++|++++|.++.+|..|.++++|++|+|++|.++.++. +|..+
T Consensus        13 ~~l~~~~~~l~~ip~~~~---------------~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l   77 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP---------------RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM   77 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CEEEcCCCCCCcCCCCCC---------------CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCC
Confidence            466777777777776543               35677777777777666666777777777777777666643 56666


Q ss_pred             CCccEEEccCCccccCCc-cccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEcccc
Q 007962           91 HMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN  147 (583)
Q Consensus        91 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  147 (583)
                      ++|++|++++|.++.++. .|..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence            666666666666665443 35555555555555555555443 2344444444444444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=2.9e-14  Score=139.58  Aligned_cols=261  Identities=14%  Similarity=0.209  Sum_probs=178.9

Q ss_pred             CCCCCEEEccCCccccccccccc-ccccEEECcCCCCCCCChh-hcccCCCcEEecCCCccccccccccCCCcHHHHHHH
Q 007962          252 LSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (583)
Q Consensus       252 ~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l  329 (583)
                      +..++.+.+.+. ++.++...+. .+|+.+.+.++ +..+... |.+ .+|+.+.+.. .+..++..+|.+.        
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c--------  179 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYC--------  179 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTC--------
T ss_pred             cCCccEEEECCc-cCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCc--------
Confidence            466777777553 4444443332 34778887665 5554443 555 3688888875 5666666555443        


Q ss_pred             HhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCC-ccccCCCCCcEE
Q 007962          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTL  408 (583)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~-~~l~~~~~L~~L  408 (583)
                                                 .+|+.+.+.++.+..++...+.+.+|+.+.+..+ +..++ .+|..|++|+.+
T Consensus       180 ---------------------------~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l  231 (401)
T 4fdw_A          180 ---------------------------YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTI  231 (401)
T ss_dssp             ---------------------------TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCE
T ss_pred             ---------------------------ccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEE
Confidence                                       3677888888888877777777788888888744 55544 367788888888


Q ss_pred             EccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccC-----CCCCCCCCCCCccceEecc
Q 007962          409 ILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS-----LPENPPFSSLPHLQELYLR  483 (583)
Q Consensus       409 ~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~  483 (583)
                      ++..+ ++.+....|.+ .+|+.+.+. +.++.++..+|.+|++|+.+++.++.+.     .+...+|..|++|+.+.+.
T Consensus       232 ~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          232 EIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             ECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             ecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            88764 56666666766 678888884 5577787788888888888888776554     4566678888888888888


Q ss_pred             ccccccccc-chhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCCCcCCCCccccc-cccceeeccCCCCc
Q 007962          484 RMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE-PSLQALRLDGNPLR  558 (583)
Q Consensus       484 ~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~~~~~  558 (583)
                      + .++.++. .+.+|++|+.+++..+ ++.+. .+|.++ +|+.+++.+|.+..++...+..+ ..++.|++-.+.+.
T Consensus       309 ~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          309 E-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             T-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             C-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            4 4665544 3446788888888554 66554 447777 88888888887777777666654 36777777766543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=1.2e-13  Score=135.20  Aligned_cols=110  Identities=9%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             cccCCCCCcEEEccCCCCC-----CCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCC
Q 007962          398 ELSSCASLQTLILSRNKIK-----DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFS  472 (583)
Q Consensus       398 ~l~~~~~L~~L~l~~~~l~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  472 (583)
                      +|..|++|+.+++.++.+.     .+...+|.+|++|+.+.+. +.++.+...+|.+|++|+.+++..+ +..+...+|.
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~  343 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN  343 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC
Confidence            4555666666666555443     3445556666666666666 3466666666666666666666443 5555555666


Q ss_pred             CCCccceEecccccccccccc-hhccC-cccEEeCCCCcC
Q 007962          473 SLPHLQELYLRRMQLREAPTD-ILRLQ-QLRILDLSQNSL  510 (583)
Q Consensus       473 ~l~~L~~L~l~~~~l~~~~~~-~~~~~-~L~~L~l~~n~l  510 (583)
                      .+ +|+.+.+.++.+..++.. +.+++ .++.|.+..+.+
T Consensus       344 ~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          344 NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            66 666666666655544332 23342 556666665543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=3.1e-15  Score=129.28  Aligned_cols=133  Identities=20%  Similarity=0.192  Sum_probs=97.0

Q ss_pred             hcCCCCcEEecCCCCCccCCCCccCCC-CcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccch-hccCccc
Q 007962          424 TSLSSLSCLKLDNNPLRQVPSDGFKDI-PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLR  501 (583)
Q Consensus       424 ~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~~L~  501 (583)
                      ..+.+|+.|++++|.++.++.  +..+ ++|++|++++|.++..  ..+..+++|++|++++|.++.+|..+ ..+++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            455666666666666665532  3333 3777777777777655  45777788888888888888777555 6788888


Q ss_pred             EEeCCCCcCCccch--hhcCCCCCCEEeCCCCCCCcCCCC---ccccccccceeeccCCCCccc
Q 007962          502 ILDLSQNSLQSIPE--GFKNLTSLTELDLSDNNISALPPE---LGLLEPSLQALRLDGNPLRSI  560 (583)
Q Consensus       502 ~L~l~~n~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~L~~L~l~~~~~~~~  560 (583)
                      +|++++|.++.+|.  .+..+++|++|++++|+++.++..   .+..+++|+.|++++|...+.
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            88888888888776  678888899999998888877775   233448889999988886554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.56  E-value=2.1e-13  Score=134.36  Aligned_cols=130  Identities=13%  Similarity=0.244  Sum_probs=87.0

Q ss_pred             ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCc
Q 007962          397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH  476 (583)
Q Consensus       397 ~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  476 (583)
                      .+|..|..|+.+.+.+. +..+....|.++++|+.+.+. +.++.++..+|.+|++|+.+++..+ ++.+...+|..|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            35677888888887554 344556667888888888886 4577788888888888888888754 66666777888888


Q ss_pred             cceEeccccccccccc-chhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCC
Q 007962          477 LQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNN  532 (583)
Q Consensus       477 L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~  532 (583)
                      |+.+.|..+ ++.+.. .|.+|++|+.+++.++... . ..+..+.+|+.+.+..+.
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W-NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H-HTCBCCCCC---------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h-hhhhccCCCCEEEeCCCC
Confidence            888888654 555543 4557888888888877432 1 346677888888877663

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.54  E-value=7e-14  Score=122.37  Aligned_cols=126  Identities=25%  Similarity=0.341  Sum_probs=91.6

Q ss_pred             cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCc
Q 007962          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (583)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  462 (583)
                      +.++++++.++.+|..+.  ++|++|++++|.++.++ ..|..+++|+.|++++|.++.++...|.++++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456677777776665443  56777777777777665 456777777777777777777776667777777777777777


Q ss_pred             cCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCC
Q 007962          463 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       463 ~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~  511 (583)
                      ++...+.++..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            7777777777777888888888877777664 556778888888887664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=5.4e-14  Score=123.18  Aligned_cols=127  Identities=24%  Similarity=0.366  Sum_probs=77.4

Q ss_pred             cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChh-hhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      +.++++++.++.+|..+.  +++++|++++|.+..+... .|..+++|++|++++|.++++....|.++++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            456666666666655433  2566666666666655442 3556666666666666666665555666666666666666


Q ss_pred             ccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCC
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~  511 (583)
                      .++...+..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            66665555566666666666666666643 445556666666666666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.53  E-value=1.6e-13  Score=118.67  Aligned_cols=127  Identities=31%  Similarity=0.421  Sum_probs=66.2

Q ss_pred             cEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCC
Q 007962          430 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQN  508 (583)
Q Consensus       430 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n  508 (583)
                      +.++++++.++.++..   -.++|+.|++++|.+.......+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3444444444444322   123445555555554444444445555555555555555544433 345555666666666


Q ss_pred             cCCccchh-hcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCcc
Q 007962          509 SLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS  559 (583)
Q Consensus       509 ~l~~l~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~~  559 (583)
                      .++.+|.. +..+++|++|++++|+++.+++..+..+++|+.|++++|++..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            55554433 4556666666666666666665554444666666666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.9e-13  Score=118.17  Aligned_cols=128  Identities=28%  Similarity=0.413  Sum_probs=72.6

Q ss_pred             ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      .+.++++++.++.+|..+.  ++|++|++++|.+..+....|..+++|++|++++|.++.++...|.++++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3455666666655554322  45666666666666555555556666666666666666555555555666666666666


Q ss_pred             ccCCCCCCCCCCCCccceEecccccccccccch-hccCcccEEeCCCCcCC
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~n~l~  511 (583)
                      .++......+..+++|++|++++|.++.++... ..+++|++|++++|.+.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            655555444555555555555555555554432 34555555555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.52  E-value=7.4e-13  Score=130.42  Aligned_cols=126  Identities=15%  Similarity=0.266  Sum_probs=76.0

Q ss_pred             cCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  458 (583)
                      +..|+.+.+......-...++..+++|+.+.+. +.+..+....|.+|.+|+.+.+.. .++.+...+|.+|++|+.+.+
T Consensus       264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             CSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEE
T ss_pred             cccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCCEEEE
Confidence            445555555543322223356667777777774 345566666777778888887764 367777777888888888887


Q ss_pred             CCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCc
Q 007962          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS  509 (583)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~  509 (583)
                      ..+ +..+...+|.+|++|+.+.+.++....  ..+..+..|+.+.+..+.
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            643 666666777888888888877764331  344566777777776654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.52  E-value=8e-14  Score=122.08  Aligned_cols=129  Identities=22%  Similarity=0.283  Sum_probs=118.4

Q ss_pred             ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc--cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecC
Q 007962          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (583)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  435 (583)
                      ..+.++++++.+..+|..+.  ..+++|++++|.++.++.  .+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus         9 ~~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A            9 EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            34788999999999988664  389999999999999875  38899999999999999999988889999999999999


Q ss_pred             CCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEeccccccc
Q 007962          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (583)
Q Consensus       436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  488 (583)
                      +|+++.++...|.++++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            99999999888999999999999999999988889999999999999999887

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=7.8e-14  Score=147.59  Aligned_cols=149  Identities=23%  Similarity=0.246  Sum_probs=57.0

Q ss_pred             CCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCC---------CChhhhhcCCCCcEEecCCCCCccCCCCccCCC
Q 007962          380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD---------WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDI  450 (583)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  450 (583)
                      +.++.+++.++.+...+..+     ++.++++.+.+..         .....+..++.|+.|+|++|.+..++.. +..+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l  246 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISAN-IFKY  246 (727)
T ss_dssp             ------------------------------------------------------CCCCCCEEECTTSCCSCCCGG-GGGC
T ss_pred             CccceEEeeCCCCCcchhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChh-hcCC
Confidence            44666777666665544332     2223333332222         2233345555555555555555554443 2245


Q ss_pred             CcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCC
Q 007962          451 PMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSD  530 (583)
Q Consensus       451 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~  530 (583)
                      ++|++|+|++|.++ ..+..+..+++|+.|+|++|.++.+|..++.+++|+.|++++|.++.+|..+..+++|++|+|++
T Consensus       247 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          247 DFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             CCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            55555555555554 22334455555555555555555555555555555555555555555554455555555555555


Q ss_pred             CCCCc
Q 007962          531 NNISA  535 (583)
Q Consensus       531 ~~l~~  535 (583)
                      |+|+.
T Consensus       326 N~l~~  330 (727)
T 4b8c_D          326 NPLEK  330 (727)
T ss_dssp             SCCCS
T ss_pred             CccCC
Confidence            55553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.47  E-value=2.2e-15  Score=132.99  Aligned_cols=128  Identities=29%  Similarity=0.315  Sum_probs=92.8

Q ss_pred             CccEEEcCCC--cchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        46 ~L~~L~ls~~--~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      .++...+.+.  .++.+|..|.++++|++|++++|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~  102 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence            4455555544  45566667777888888888888877776 77777888888888887777777677777788888888


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCc--ccccCCCCcEEEecCCcceee
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVL  175 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~i~~~  175 (583)
                      |.++.++ .+..+++|++|++++|.+..++.  .+..+++|++|++++|.+...
T Consensus       103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            8777765 56777778888888777776543  567777777777777776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.41  E-value=3.8e-11  Score=117.71  Aligned_cols=126  Identities=13%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             ccccCCCCCEEEccccccCCCC-cccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccch-hhcCCccc
Q 007962          132 SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRL  209 (583)
Q Consensus       132 ~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L  209 (583)
                      ++....+|+.+.+.+. ++.++ ..|..|.+|+.+.+.. .+..|+..+|.++ +|+.+.+..+ +..+.. ++.. .+|
T Consensus        41 ~~~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             TGGGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             ccccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            3444455555555442 23332 2456666666666643 2556666666665 4555555433 222222 2222 356


Q ss_pred             cEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCC
Q 007962          210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (583)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~  263 (583)
                      +.+.+.++....-...+.++ +++.+.+..+--..-...+..+.+++.+.+...
T Consensus       116 ~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~  168 (379)
T 4h09_A          116 DDFEFPGATTEIGNYIFYNS-SVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSN  168 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTC-CCCEEEECTTCCEECSCTTTTCTTCCEEEECTT
T ss_pred             ccccCCCccccccccccccc-eeeeeeccceeeccccchhcccccccccccccc
Confidence            66666543222112223333 455555444322222234555666666665544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.1e-14  Score=128.52  Aligned_cols=116  Identities=23%  Similarity=0.285  Sum_probs=80.6

Q ss_pred             CcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccC
Q 007962           80 LSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC  159 (583)
Q Consensus        80 l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l  159 (583)
                      ++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|.+..++ .+..+
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l  114 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence            3445557778888888888888777776 777777788888877777777766666777777777777777664 56666


Q ss_pred             CCCcEEEecCCcceeech-hhhcccccCcEEEcCCCcCC
Q 007962          160 SKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN  197 (583)
Q Consensus       160 ~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~  197 (583)
                      ++|++|++++|.+..++. ..+..+++|++|++++|.+.
T Consensus       115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~  153 (198)
T 1ds9_A          115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred             CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence            677777777766665543 34556666666666666553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.40  E-value=8.3e-13  Score=113.25  Aligned_cols=102  Identities=28%  Similarity=0.356  Sum_probs=60.7

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccch-hhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~-~~~~   89 (583)
                      ++++|++++++++|..++               ++|++|++++|.++.+ +..|.++++|++|+|++|.++.+|. .|..
T Consensus        15 ~~l~~~~n~l~~iP~~~~---------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~   79 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP---------------TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK   79 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cEEEeCCCCCCccCCCcC---------------CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCC
Confidence            456666666666666542               3566666666666655 3456666666666666666666554 3456


Q ss_pred             CCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCCc
Q 007962           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE  128 (583)
Q Consensus        90 ~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~  128 (583)
                      +++|++|++++|.++.+|.. +..+++|++|++++|++..
T Consensus        80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence            66666666666666655543 5555566666666555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.1e-12  Score=112.17  Aligned_cols=102  Identities=28%  Similarity=0.376  Sum_probs=69.2

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhh-hHhhCCCCCCcEEEcCCCCCcccch-hhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIG   88 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l-~~~~~~~~~L~~L~L~~~~l~~l~~-~~~   88 (583)
                      .++++|++++++++|..++               +++++|++++|.|+.+ +..|.++++|++|+|++|.++.++. .|.
T Consensus        11 ~~~l~~s~n~l~~ip~~~~---------------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~   75 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP---------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD   75 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred             CCEEEeCCCCcCccCccCC---------------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhcc
Confidence            4567777777777776553               3577777777777766 3457777777777777777776655 456


Q ss_pred             CCCCccEEEccCCccccCCcc-ccccCcccEEEcCCCcCC
Q 007962           89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLK  127 (583)
Q Consensus        89 ~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~  127 (583)
                      .+++|++|+|++|.++.++.. +..+++|++|++++|++.
T Consensus        76 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            777777777777777666543 566666666666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.35  E-value=9.1e-11  Score=114.97  Aligned_cols=310  Identities=12%  Similarity=0.116  Sum_probs=177.4

Q ss_pred             ccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccc-hhhcCCccccEEEccCCcCcccCC-CCcCCCCC
Q 007962          155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSL  232 (583)
Q Consensus       155 ~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L  232 (583)
                      ++....+|+.+.+. ..+..|+..+|.+|.+|+.+.+..+ ++.+. .++..+ +|+.+.+..+ +..+.. +|.. .+|
T Consensus        41 ~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L  115 (379)
T 4h09_A           41 WYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL  115 (379)
T ss_dssp             TGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred             ccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence            45566778888885 4578888888888888888888654 44443 244444 5666665543 333322 2333 356


Q ss_pred             cEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCC-ChhhcccCCCcEEecCCCccc
Q 007962          233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR  311 (583)
Q Consensus       233 ~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  311 (583)
                      +.+.+..+....-...+.++ .++.+.+..+                       +..+ ...+.++..++.+.+......
T Consensus       116 ~~i~lp~~~~~i~~~~F~~~-~l~~~~~~~~-----------------------v~~i~~~~f~~~~~l~~~~~~~~~~~  171 (379)
T 4h09_A          116 DDFEFPGATTEIGNYIFYNS-SVKRIVIPKS-----------------------VTTIKDGIGYKAENLEKIEVSSNNKN  171 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTC-CCCEEEECTT-----------------------CCEECSCTTTTCTTCCEEEECTTCSS
T ss_pred             ccccCCCccccccccccccc-eeeeeeccce-----------------------eeccccchhcccccccccccccccce
Confidence            66666543221111222222 3333333221                       1111 123555666666666544321


Q ss_pred             cccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhhhccCCccEEEcCCCC
Q 007962          312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS  391 (583)
Q Consensus       312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  391 (583)
                      .........                                              +...........+..+..+.+....
T Consensus       172 ~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  205 (379)
T 4h09_A          172 YVAENYVLY----------------------------------------------NKNKTILESYPAAKTGTEFTIPSTV  205 (379)
T ss_dssp             EEEETTEEE----------------------------------------------ETTSSEEEECCTTCCCSEEECCTTC
T ss_pred             eecccceec----------------------------------------------ccccceeccccccccccccccccce
Confidence            111000000                                              0000011112223445555554433


Q ss_pred             CCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCC
Q 007962          392 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF  471 (583)
Q Consensus       392 l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  471 (583)
                      .......+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|
T Consensus       206 ~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF  282 (379)
T 4h09_A          206 KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLC  282 (379)
T ss_dssp             CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTT
T ss_pred             eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccc
Confidence            2223334566777777777543 45555566777888888888754 67777777888888888888643 555566678


Q ss_pred             CCCCccceEeccccccccccc-chhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCCCcCCCCccccc
Q 007962          472 SSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE  544 (583)
Q Consensus       472 ~~l~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~  544 (583)
                      ..|++|+.+.+.++.++.++. .+.+|.+|+++++..+ ++.+. .+|.+|++|+++.+..+ ++.+....|..+
T Consensus       283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            888888888888777776654 3456788888888654 66554 45788888888888665 777777766664

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=1.1e-11  Score=105.90  Aligned_cols=105  Identities=27%  Similarity=0.376  Sum_probs=74.2

Q ss_pred             ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      .++++++++.++.+|..+.  ++|++|++++|.+..+....|..+++|++|++++|.++.++...|.++++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4667777777777776543  67777777777777776666677777777777777777777666677777777777777


Q ss_pred             ccCCCCCCCCCCCCccceEeccccccc
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLR  488 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~  488 (583)
                      .++...+..+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            776666666666677777777776655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.33  E-value=1.2e-11  Score=106.04  Aligned_cols=108  Identities=22%  Similarity=0.313  Sum_probs=78.6

Q ss_pred             ccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       382 L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      -+.++++++.++.+|..+.  ++|++|++++|.+..+.+..|..+++|+.|++++|+++.++...|.++++|++|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3667777777777776553  67788888888777777766777777788888777777777666677777777777777


Q ss_pred             ccCCCCCCCCCCCCccceEecccccccccc
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREAP  491 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  491 (583)
                      .+.......+..+++|++|++++|.+...+
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            777666666777777777777777666443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1e-13  Score=134.31  Aligned_cols=181  Identities=18%  Similarity=0.179  Sum_probs=126.6

Q ss_pred             cCCccEEEcCCCCCCc-----CCcccc-CCCCCcEEEccCCCCCCCChhhh-hcCCCCcEEecCCCCCccCCCCcc----
Q 007962          379 AGEITKLDLSRNSIQE-----LPPELS-SCASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGF----  447 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~-----l~~~l~-~~~~L~~L~l~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~----  447 (583)
                      .+.|+++++++|.++.     +...+. .+++|++|++++|.+++.....+ ..+++|+.|++++|.+++.....+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999876     222233 34799999999999876433322 346789999999999886543333    


Q ss_pred             -CCCCcccEEeCCCCccCCCCCC----CCCCCCccceEecccccccc-----cccchhccCcccEEeCCCCcCCc-----
Q 007962          448 -KDIPMLQILDLSYNIASLPENP----PFSSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS-----  512 (583)
Q Consensus       448 -~~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~n~l~~-----  512 (583)
                       ...++|++|++++|.+++....    .+..+++|++|+|++|.++.     +...+..+++|++|++++|.++.     
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3578999999999988653322    23567899999999999883     34556677899999999999983     


Q ss_pred             cchhhcCCCCCCEEeCCCCCCCcCCCC----cccccc--ccceee--ccCCCCccc
Q 007962          513 IPEGFKNLTSLTELDLSDNNISALPPE----LGLLEP--SLQALR--LDGNPLRSI  560 (583)
Q Consensus       513 l~~~l~~~~~L~~L~l~~~~l~~~~~~----~~~~~~--~L~~L~--l~~~~~~~~  560 (583)
                      ++..+...++|++|++++|.|+.....    +... .  .|+.+.  +.++.+++-
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~-~~~~L~~l~~ll~~~~~~~~  285 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGA-AEGGARVVVSLTEGTAVSEY  285 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC-------CEEECCCC----CHHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcC-CCccchhhHhhhcCCccCHH
Confidence            445567789999999999998832221    1111 2  177777  777776544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=1.6e-12  Score=125.86  Aligned_cols=153  Identities=18%  Similarity=0.173  Sum_probs=92.3

Q ss_pred             cCccEEEcCCCcchhhh-----HhhC-CCCCCcEEEcCCCCCcc--cchhhhCCCCccEEEccCCcccc-----CCccc-
Q 007962           45 VDLQKLILAHNNIEKLK-----EDLR-NLPLLTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSIMK-----IPDEI-  110 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~-----~~~~-~~~~L~~L~L~~~~l~~--l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~-  110 (583)
                      +.|+.|++++|.++...     ..+. ..++|++|+|++|.++.  +......+++|++|+|++|.++.     +...+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45777777777766322     2233 23577777777777652  11222344567777777776652     11122 


Q ss_pred             cccCcccEEEcCCCcCCc-----CCcccccCCCCCEEEccccccCC-----CCcccccCCCCcEEEecCCcceeechhh-
Q 007962          111 GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNL-  179 (583)
Q Consensus       111 ~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~i~~~~~~~-  179 (583)
                      ...++|++|++++|.++.     ++..+..+++|++|++++|.+..     ++..+..+++|++|++++|.+....... 
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            235667777777777652     33445666777777777776652     3445666677777777777776543322 


Q ss_pred             ---hcccccCcEEEcCCCcCC
Q 007962          180 ---IASWTMLTELIASKNLLN  197 (583)
Q Consensus       180 ---~~~~~~L~~L~l~~~~~~  197 (583)
                         +...+.|++|++++|.+.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence               334567778888777775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.98  E-value=1.8e-09  Score=104.30  Aligned_cols=102  Identities=27%  Similarity=0.346  Sum_probs=61.3

Q ss_pred             EEcCCC-CCCcCCccccCCCCCcEEEccC-CCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCCc
Q 007962          385 LDLSRN-SIQELPPELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI  462 (583)
Q Consensus       385 L~l~~~-~l~~l~~~l~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  462 (583)
                      ++.+++ .++.+|. +..+++|++|+|++ |.+..++...|..+++|+.|+|++|.+..++...|.++++|++|+|++|.
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            455555 5555665 66666666666664 66666655556666666666666666666655556666666666666666


Q ss_pred             cCCCCCCCCCCCCccceEeccccccc
Q 007962          463 ASLPENPPFSSLPHLQELYLRRMQLR  488 (583)
Q Consensus       463 ~~~~~~~~~~~l~~L~~L~l~~~~l~  488 (583)
                      ++.+.+..+..++ |+.|+|.+|.+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            6655544444444 666666666555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.95  E-value=1.7e-09  Score=104.44  Aligned_cols=104  Identities=20%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             cEEEccCC-CCCCCChhhhhcCCCCcEEecCC-CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecc
Q 007962          406 QTLILSRN-KIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR  483 (583)
Q Consensus       406 ~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  483 (583)
                      ..++++++ .++.++.  +..+++|+.|+|++ |.+..++...|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus        11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 8888776  78999999999996 99999998889999999999999999999888889999999999999


Q ss_pred             cccccccccchhccCcccEEeCCCCcCC
Q 007962          484 RMQLREAPTDILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       484 ~~~l~~~~~~~~~~~~L~~L~l~~n~l~  511 (583)
                      +|.++.+|...+....|+.|++.+|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCcc
Confidence            9999999887666555999999999887

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=2.1e-09  Score=102.99  Aligned_cols=176  Identities=16%  Similarity=0.148  Sum_probs=106.8

Q ss_pred             hhccCCccEEEcCCCCCC----------cCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCC
Q 007962          376 IWEAGEITKLDLSRNSIQ----------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD  445 (583)
Q Consensus       376 ~~~~~~L~~L~l~~~~l~----------~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  445 (583)
                      ...+++|+.|.+.+....          ++...+..+|+|+.|.++++.-..+..  + .+++|+.|++..|.+......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHH
Confidence            445678888888654321          133445677889999998773222222  2 378889999888776543222


Q ss_pred             cc--CCCCcccEEeCCC--Ccc-CCCCC----CCC--CCCCccceEecccccccc-cccch---hccCcccEEeCCCCcC
Q 007962          446 GF--KDIPMLQILDLSY--NIA-SLPEN----PPF--SSLPHLQELYLRRMQLRE-APTDI---LRLQQLRILDLSQNSL  510 (583)
Q Consensus       446 ~~--~~~~~L~~L~l~~--~~~-~~~~~----~~~--~~l~~L~~L~l~~~~l~~-~~~~~---~~~~~L~~L~l~~n~l  510 (583)
                      .+  ..+|+|+.|+++.  +.. .+...    ..+  ..+|+|+.|.+.+|.+.. .+..+   ..+++|++|+++.|.+
T Consensus       212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence            22  3678888888753  211 11100    112  357899999998887762 11222   2478899999998888


Q ss_pred             Cc-----cchhhcCCCCCCEEeCCCCCCCcCCCCccccccc-cceeeccCCC
Q 007962          511 QS-----IPEGFKNLTSLTELDLSDNNISALPPELGLLEPS-LQALRLDGNP  556 (583)
Q Consensus       511 ~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~~~  556 (583)
                      ..     ++.++.++++|++|++++|.|+........  .. ...+++++++
T Consensus       292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~--~alg~~~~~~~~~  341 (362)
T 2ra8_A          292 TDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ--KSLPMKIDVSDSQ  341 (362)
T ss_dssp             BHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH--HHCCSEEECCSBC
T ss_pred             ChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH--HHcCCEEEecCCc
Confidence            73     445556778899999988877632111111  11 2456776665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=6.8e-09  Score=99.50  Aligned_cols=81  Identities=12%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             hhCCCCCCcEEEcCCCCCc----------ccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcC-Cc
Q 007962           63 DLRNLPLLTVLNVSHNKLS----------ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PS  131 (583)
Q Consensus        63 ~~~~~~~L~~L~L~~~~l~----------~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~~  131 (583)
                      +..++++|+.|.+......          .+...+..+|+|+.|++++|.-..++. + .+++|++|++..+.+..- ..
T Consensus       134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~  211 (362)
T 2ra8_A          134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVE  211 (362)
T ss_dssp             THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred             hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHH
Confidence            3456677777777543211          244456677777777777663123333 2 266777777766655411 12


Q ss_pred             ccc--cCCCCCEEEcc
Q 007962          132 SLG--RCLNLSDFKAS  145 (583)
Q Consensus       132 ~~~--~~~~L~~L~l~  145 (583)
                      .+.  .+|+|++|+++
T Consensus       212 ~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          212 DILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHSBCTTCCEEEEE
T ss_pred             HHHHccCCCCcEEEEe
Confidence            222  56677776664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.79  E-value=4.3e-09  Score=90.97  Aligned_cols=114  Identities=14%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             hhHhhCCCCCCcEEEcCCC-CCc-----ccchhhhCCCCccEEEccCCccc-----cCCccccccCcccEEEcCCCcCCc
Q 007962           60 LKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKE  128 (583)
Q Consensus        60 l~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~~  128 (583)
                      +...+..++.|++|+|++| .+.     .+...+...++|++|+|++|.++     .+...+...++|++|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445666677777777776 665     23345566667777777777665     233344555666666666666652


Q ss_pred             -----CCcccccCCCCCEEEc--cccccC-----CCCcccccCCCCcEEEecCCcce
Q 007962          129 -----LPSSLGRCLNLSDFKA--SNNCIT-----SLPEDLADCSKMSKLDVEGNKLT  173 (583)
Q Consensus       129 -----~~~~~~~~~~L~~L~l--~~~~~~-----~l~~~l~~l~~L~~L~l~~~~i~  173 (583)
                           +...+...++|++|++  ++|.+.     .+.+.+...++|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence                 3345556666666666  556655     23445555666777777666654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.77  E-value=6.6e-09  Score=89.77  Aligned_cols=109  Identities=21%  Similarity=0.246  Sum_probs=89.0

Q ss_pred             ccccCccEEEcCCC-cch-----hhhHhhCCCCCCcEEEcCCCCCcc-----cchhhhCCCCccEEEccCCccc-----c
Q 007962           42 WEAVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM-----K  105 (583)
Q Consensus        42 ~~~~~L~~L~ls~~-~i~-----~l~~~~~~~~~L~~L~L~~~~l~~-----l~~~~~~~~~L~~L~L~~~~l~-----~  105 (583)
                      ...+.|++|+|++| .+.     .+...+...++|++|+|++|.+..     +...+...+.|++|+|++|.++     .
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            34678999999999 886     355678889999999999999873     4556778889999999999887     2


Q ss_pred             CCccccccCcccEEEc--CCCcCCc-----CCcccccCCCCCEEEccccccC
Q 007962          106 IPDEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (583)
Q Consensus       106 l~~~~~~l~~L~~L~l--~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~  150 (583)
                      +...+...++|++|++  ++|.+..     +...+...++|++|++++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5667788889999999  8888872     4456778899999999999775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=3.1e-08  Score=82.82  Aligned_cols=83  Identities=8%  Similarity=0.057  Sum_probs=38.1

Q ss_pred             CCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCC-CccCCCCccCCC----CcccEEeCCCCc-cCCCCCCCCCCCCc
Q 007962          403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDI----PMLQILDLSYNI-ASLPENPPFSSLPH  476 (583)
Q Consensus       403 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~l~~  476 (583)
                      .+|+.||+++|.+++.....+..+++|+.|+|++|. +++.....+..+    ++|++|++++|. +++.+...+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            345666666665555444445555666666665553 333222222221    234444444442 33333333334444


Q ss_pred             cceEecccc
Q 007962          477 LQELYLRRM  485 (583)
Q Consensus       477 L~~L~l~~~  485 (583)
                      |++|++++|
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            444444444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.32  E-value=3.8e-07  Score=82.61  Aligned_cols=105  Identities=22%  Similarity=0.202  Sum_probs=64.6

Q ss_pred             CCCcccccCccE--EEcCCCcchhhhHh----hCCCCCCcEEEcCCCCCcccc---hhhhCCCCccEEEccCCccccCCc
Q 007962           38 GDKWWEAVDLQK--LILAHNNIEKLKED----LRNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPD  108 (583)
Q Consensus        38 ~~~~~~~~~L~~--L~ls~~~i~~l~~~----~~~~~~L~~L~L~~~~l~~l~---~~~~~~~~L~~L~L~~~~l~~l~~  108 (583)
                      -+.|...+.|+.  ++++.|....++..    ..++++|+.|+|++|.++.++   ..+..+++|++|+|++|.+..+ .
T Consensus       134 Ls~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~  212 (267)
T 3rw6_A          134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-R  212 (267)
T ss_dssp             CTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-G
T ss_pred             HHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-h
Confidence            344555555665  66677765544432    256778888888888777543   4566777888888888777655 2


Q ss_pred             cccccC--cccEEEcCCCcCCc-CC-------cccccCCCCCEEE
Q 007962          109 EIGSAT--ALVKFDCSSNQLKE-LP-------SSLGRCLNLSDFK  143 (583)
Q Consensus       109 ~~~~l~--~L~~L~l~~~~~~~-~~-------~~~~~~~~L~~L~  143 (583)
                      .+..+.  +|+.|++++|++.. ++       ..+..+|+|+.|+
T Consensus       213 ~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          213 ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            344444  67777777777652 32       1245556666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=1.3e-07  Score=79.15  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=43.5

Q ss_pred             cccEEeCCCCccCCCCCCCCCCCCccceEecccc-ccccc-ccchhc----cCcccEEeCCCCc-CC--ccchhhcCCCC
Q 007962          452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRM-QLREA-PTDILR----LQQLRILDLSQNS-LQ--SIPEGFKNLTS  522 (583)
Q Consensus       452 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~-~~~~~~----~~~L~~L~l~~n~-l~--~l~~~l~~~~~  522 (583)
                      .|+.||+++|.+++.+...+..+++|++|+|++| .++.- ...+..    +++|++|++++|. ++  ++ ..+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence            4556666555555554444555666666666666 35521 112222    2356666666663 55  22 23455666


Q ss_pred             CCEEeCCCC-CCC
Q 007962          523 LTELDLSDN-NIS  534 (583)
Q Consensus       523 L~~L~l~~~-~l~  534 (583)
                      |++|++++| .++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            666666666 444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.02  E-value=1.6e-06  Score=73.94  Aligned_cols=107  Identities=16%  Similarity=0.200  Sum_probs=79.6

Q ss_pred             ccCccEEEcCCC-cch-----hhhHhhCCCCCCcEEEcCCCCCc-----ccchhhhCCCCccEEEccCCccc-----cCC
Q 007962           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (583)
Q Consensus        44 ~~~L~~L~ls~~-~i~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~  107 (583)
                      .+.|+.|+|+++ .|.     .+.+.+...+.|+.|+|++|.+.     .+..++...+.|++|+|+.|.++     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            467888999875 665     35567888888999999999887     34556778888999999999887     345


Q ss_pred             ccccccCcccEEEcCCC---cCC-----cCCcccccCCCCCEEEccccccC
Q 007962          108 DEIGSATALVKFDCSSN---QLK-----ELPSSLGRCLNLSDFKASNNCIT  150 (583)
Q Consensus       108 ~~~~~l~~L~~L~l~~~---~~~-----~~~~~~~~~~~L~~L~l~~~~~~  150 (583)
                      +.+..-+.|+.|+++++   .+.     .+.+.+..-+.|++|+++.+.+.
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            56677778999999865   333     23456777788999998876543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.97  E-value=6.8e-06  Score=70.10  Aligned_cols=113  Identities=15%  Similarity=0.179  Sum_probs=75.4

Q ss_pred             hhhHhhCCCCCCcEEEcCCC-CCc-----ccchhhhCCCCccEEEccCCccc-----cCCccccccCcccEEEcCCCcCC
Q 007962           59 KLKEDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK  127 (583)
Q Consensus        59 ~l~~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~  127 (583)
                      .+...+.+.+.|++|+|+++ .+.     .+..++.....|+.|+|++|.++     .+...+...+.|++|+++.|.+.
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34456778889999999885 776     34557778888999999988887     34445666777888888888776


Q ss_pred             -----cCCcccccCCCCCEEEcccc---ccC-----CCCcccccCCCCcEEEecCCc
Q 007962          128 -----ELPSSLGRCLNLSDFKASNN---CIT-----SLPEDLADCSKMSKLDVEGNK  171 (583)
Q Consensus       128 -----~~~~~~~~~~~L~~L~l~~~---~~~-----~l~~~l~~l~~L~~L~l~~~~  171 (583)
                           .+.+.+..-+.|++|+++++   .+.     .+.+.+..-++|+.|+++.+.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence                 33345555566777777654   222     233445555666666665443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=6.1e-06  Score=74.65  Aligned_cols=79  Identities=24%  Similarity=0.315  Sum_probs=62.9

Q ss_pred             cccCccEEEcCCCcchhhh---HhhCCCCCCcEEEcCCCCCcccchhhhCCC--CccEEEccCCccc-cCCc-------c
Q 007962           43 EAVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLSELPAAIGELH--MLKSLDVSFNSIM-KIPD-------E  109 (583)
Q Consensus        43 ~~~~L~~L~ls~~~i~~l~---~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~--~L~~L~L~~~~l~-~l~~-------~  109 (583)
                      ++++|+.|+|++|+++.++   ..+..+++|+.|+|++|.+..+ ..+..+.  +|++|+|++|.+. .+|.       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3678999999999999764   5678999999999999999977 3334344  9999999999987 3442       3


Q ss_pred             ccccCcccEEEcC
Q 007962          110 IGSATALVKFDCS  122 (583)
Q Consensus       110 ~~~l~~L~~L~l~  122 (583)
                      +..+++|+.||-.
T Consensus       247 l~~~P~L~~LDg~  259 (267)
T 3rw6_A          247 RERFPKLLRLDGH  259 (267)
T ss_dssp             HHHCTTCCEESSC
T ss_pred             HHHCcccCeECCc
Confidence            6778999998753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.57  E-value=6e-05  Score=60.12  Aligned_cols=56  Identities=27%  Similarity=0.389  Sum_probs=48.0

Q ss_pred             hceeeccCCcCC--CCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCc
Q 007962           11 SGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS   81 (583)
Q Consensus        11 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~   81 (583)
                      -..+||++++++  .+|.+++               ++++.|+|++|.|+.++. .|..+++|+.|+|++|.+.
T Consensus        10 ~~~v~Cs~~~L~~~~vP~~lp---------------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           10 GTLVDCGRRGLTWASLPTAFP---------------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTEEECCSSCCCTTTSCSCCC---------------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCEEEeCCCCCccccCCCCCC---------------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            357999999999  9998774               469999999999999975 6888999999999998775

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.55  E-value=0.00025  Score=56.46  Aligned_cols=55  Identities=40%  Similarity=0.633  Sum_probs=38.4

Q ss_pred             EEeCCCCcCC--ccchhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962          502 ILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       502 ~L~l~~n~l~--~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~  558 (583)
                      .++.+++.++  .+|..+.  ++|++|+|++|+|+.++...+...++|+.|+|.+|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666777776  6665432  46777777777777777777666677777777777764

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.70  E-value=0.24  Score=36.72  Aligned_cols=48  Identities=19%  Similarity=0.226  Sum_probs=25.8

Q ss_pred             CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccc
Q 007962          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM  485 (583)
Q Consensus       437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  485 (583)
                      ..++.+...+|.+|++|+.+.+..+ ++.++..+|..|.+|+.+.+.+.
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            3455555555555555555555532 44445555555555555555443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=90.85  E-value=0.42  Score=35.44  Aligned_cols=49  Identities=8%  Similarity=0.105  Sum_probs=38.5

Q ss_pred             CCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          412 RNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       412 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      +-.++.+....|.+|.+|+.+.|.. .++.+...+|.+|.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence            3456667777888888888888875 477888888888999988888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	583
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-15
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-11
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	7e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	7e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 2e-17
 Identities = 54/300 (18%), Positives = 103/300 (34%), Gaps = 28/300 (9%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   CQ  L V+  S+  L  +P ++        L L  N +  ++           L  
Sbjct: 4   CPFRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK--NLHT 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L     +                  +L    + L L    L  +P ++ +   + +L + 
Sbjct: 60  LILINNKISKISPGA-----FAPLVKL----ERLYLSKNQLKELPEKMPK--TLQELRVH 108

Query: 389 RNSIQELPPELSSCASLQTLILSRN---KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 445
            N I ++   + +  +   ++       K     +     +  LS +++ +  +  +P  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 446 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQ-QLRILD 504
                P L  L L  N  +  +      L +L +L L    +       L     LR L 
Sbjct: 169 LP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 225

Query: 505 LSQNSLQSIPEGFKNLTSLTELDLSDNNISALP------PELGLLEPSLQALRLDGNPLR 558
           L+ N L  +P G  +   +  + L +NNISA+       P     + S   + L  NP++
Sbjct: 226 LNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.5 bits (197), Expect = 3e-17
 Identities = 56/262 (21%), Positives = 104/262 (39%), Gaps = 19/262 (7%)

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ 125
           P   +L++ +NK++E+       L  L +L +  N I KI P        L +   S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           LKELP  + +   L + +   N IT + + + +      +   G      S     ++  
Sbjct: 91  LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 186 LTELIA---SKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNA 241
           + +L     +   +  +P+  G    L  L L  N+I     +S+ G  +LA+  +  N+
Sbjct: 149 MKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 242 -LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE------ 293
             +     L     L  L L++N+L +          + V+ L NN++S +         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 294 -IGKMTTLRKLLLTGNPLRTLR 314
              K  +   + L  NP++   
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (195), Expect = 5e-17
 Identities = 62/339 (18%), Positives = 111/339 (32%), Gaps = 52/339 (15%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLS 283
             C C L      +  L  +P +L        LDL +N++ E      +    L  L L 
Sbjct: 6   FRCQCHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILI 63

Query: 284 NNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           NN +S + P     +  L +L L+ N L+ L   +                   E     
Sbjct: 64  NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--------------ELRVHE 109

Query: 343 TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
                +             + L    L +   E                           
Sbjct: 110 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE--------------------NGAFQGM 149

Query: 403 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 462
             L  + ++   I   P  +  SL+ L    LD N + +V +   K +  L  L LS+N 
Sbjct: 150 KKLSYIRIADTNITTIPQGLPPSLTELH---LDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 463 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG------ 516
            S  +N   ++ PHL+EL+L   +L + P  +   + ++++ L  N++ +I         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 517 -FKNLTSLTELDLSDNNISALPPELGLLE--PSLQALRL 552
                 S + + L  N +     +           A++L
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.6 bits (187), Expect = 6e-16
 Identities = 54/330 (16%), Positives = 119/330 (36%), Gaps = 55/330 (16%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
            CS   L+++P  L                             + LD++ NK+T + +  
Sbjct: 16  QCSDLGLEKVPKDLPPDT-------------------------ALLDLQNNKITEIKDGD 50

Query: 180 IASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
             +   L  LI   N ++ + P     L +L RL L +N++  +P  +       E  + 
Sbjct: 51  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVH 108

Query: 239 NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPE 293
            N ++ +       L+++  ++L +N LK   +E        +LS + +++ +++ +P  
Sbjct: 109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 168

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +    +L +L L GN +  + ++ + G        L        D+ +      L  +  
Sbjct: 169 L--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-------LSSCASLQ 406
                          L  +P  + +   I  + L  N+I  +           +  AS  
Sbjct: 227 N-----------NNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275

Query: 407 TLILSRNKIKDW--PDAILTSLSSLSCLKL 434
            + L  N ++ W    +    +   + ++L
Sbjct: 276 GVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 3e-12
 Identities = 55/325 (16%), Positives = 110/325 (33%), Gaps = 88/325 (27%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +  S+  L  VP ++  +                  L L +N I ++K+ D +NL  L 
Sbjct: 14  VVQCSDLGLEKVPKDLPPD---------------TALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-------------------- 110
            L + +NK+S++ P A   L  L+ L +S N + ++P+++                    
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

Query: 111 -----GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                     +               +      LS  + ++  IT++P+ L     +++L
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTEL 176

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNL------------------------LNGMPE 201
            ++GNK+T +    +     L +L  S N                         L  +P 
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
            +     +  + LH N I +I S+                    P    K +    + L 
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSND----------------FCPPGYNTKKASYSGVSLF 280

Query: 262 SNQLKEYCVEACQLR----LSVLDL 282
           SN ++ + ++    R     + + L
Sbjct: 281 SNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 534
           HL+ +    + L + P D+       +LDL  N +  I +G FKNL +L  L L +N IS
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 535 ALPPELGLLEPSLQALRLDGNPLRSIRRTI 564
            + P        L+ L L  N L+ +   +
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKM 98

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 461 NIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQNSLQSI-PEGFK 518
            +  +P++ P    P    L L+  ++ E    D   L+ L  L L  N +  I P  F 
Sbjct: 21  GLEKVPKDLP----PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA 76

Query: 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
            L  L  L LS N +  LP +   +  +LQ LR+  N +  +R+++ +   + ++  L
Sbjct: 77  PLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVEL 131

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 76/418 (18%), Positives = 140/418 (33%), Gaps = 59/418 (14%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 23  EKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 80

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I   + + T LV    ++NQ                   +N    +L  +        K 
Sbjct: 81  IT-PLKNLTKLVDILMNNNQ---------IADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
               N+L + SN +     +       +         +  L+ L  L+        +   
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 226 I--SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
              +   +L      NN +S +       + L  L L+ NQLK+    A    L+ LDL+
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPLGIL-TNLDELSLNGNQLKDIGTLASLTNLTDLDLA 249

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           NN +S L P +  +T L +L L  N +  +                              
Sbjct: 250 NNQISNLAP-LSGLTKLTELKLGANQISNISPL--------------------------- 281

Query: 344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
                        +T+        N     S I     +T L L  N+I ++ P +SS  
Sbjct: 282 -----------AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLT 329

Query: 404 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
            LQ L  + NK+ D     L +L++++ L   +N +  +      ++  +  L L+  
Sbjct: 330 KLQRLFFANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.8 bits (198), Expect = 5e-17
 Identities = 63/375 (16%), Positives = 127/375 (33%), Gaps = 35/375 (9%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +L+  ++  L +  +    S  +    +         + ++   +  L+ L  ++  +NQ
Sbjct: 20  ALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ 77

Query: 265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
           L +        +L  + ++NN ++ + P           L             +      
Sbjct: 78  LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRL----SVTSKELSLEGMNLSAIPSEIWEAG 380
            L               S  +       T L    ++T+ E      N  +  S + +  
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
            +  L  + N I ++ P      +L  L L+ N++KD     L SL++L+ L L NN + 
Sbjct: 198 NLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQIS 254

Query: 441 QVPSDGFKDIPMLQILDLS-YNIASLPENPPFSS-------------------LPHLQEL 480
            +       +  L  L L    I+++      ++                   L +L  L
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 481 YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 540
            L    + +    +  L +L+ L  + N +  +     NLT++  L    N IS L P  
Sbjct: 313 TLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTPLA 370

Query: 541 GLLEPSLQALRLDGN 555
            L    +  L L+  
Sbjct: 371 NL--TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 65/314 (20%), Positives = 116/314 (36%), Gaps = 17/314 (5%)

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L ++ TL      +K          L+ ++ SNN L+ + P +  +T L  +L   N   
Sbjct: 43  LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDIL-MNNNQI 100

Query: 312 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
              + L N      L    +++ + +  +  T    L   +  +S  S    L  +   +
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 372 IPSEIWEAGEITKL-----DLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
             +++ +   +  L         ++       L+   +L++LI + N+I D     + + 
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT- 219

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 486
            +L  L L+ N L+ + +     +  L  LDL+ N   +    P S L  L EL L   Q
Sbjct: 220 -NLDELSLNGNQLKDIGT--LASLTNLTDLDLANN--QISNLAPLSGLTKLTELKLGANQ 274

Query: 487 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPS 546
           +       L             +         NL +LT L L  NNIS + P   L    
Sbjct: 275 ISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL--TK 330

Query: 547 LQALRLDGNPLRSI 560
           LQ L    N +  +
Sbjct: 331 LQRLFFANNKVSDV 344

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 41  WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSF 100
                +L  L L  NNI  +   + +L  L  L  ++NK+S++  ++  L  +  L    
Sbjct: 303 ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH 360

Query: 101 NSIMKIPDEIGSATALVKFDCSSN 124
           N I  +   + + T + +   +  
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 8e-06
 Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 8/86 (9%)

Query: 463 ASLPENPPFSS------LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
           A++ ++ P +       L    +  L +  + +  +    L Q+  L   +  ++SI +G
Sbjct: 4   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-DG 61

Query: 517 FKNLTSLTELDLSDNNISALPPELGL 542
            + L +LT+++ S+N ++ + P   L
Sbjct: 62  VEYLNNLTQINFSNNQLTDITPLKNL 87

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 8e-04
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 447 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLS 506
           F D  + + +       ++ +    + L  +  L   R+ ++     +  L  L  ++ S
Sbjct: 16  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFS 74

Query: 507 QNSLQSIPEGFKNLTSLTELDLSDNN 532
            N L  I    KNLT L ++ +++N 
Sbjct: 75  NNQLTDITP-LKNLTKLVDILMNNNQ 99

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (183), Expect = 1e-15
 Identities = 45/201 (22%), Positives = 75/201 (37%), Gaps = 7/201 (3%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDW 418
            E++ +  NL+A+P ++ +  + T L LS N +       L     L  L L R ++   
Sbjct: 13  LEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70

Query: 419 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 478
                 +L  L  L L +N L+ +P  G     +  +      + SLP           +
Sbjct: 71  QVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 479 ELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALP 537
                       P  +    +L  L L+ N+L  +P G    L +L  L L +N++  +P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 538 PELGLLEPSLQALRLDGNPLR 558
                    L    L GNP  
Sbjct: 189 KGFFGS-HLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 3e-10
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 5/206 (2%)

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C    L  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227
           +  +LT L  +         +L  ++     +         ++ +  ++   L + +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNN 285
                  +  GN   +  P  L    KL  L L +N L E           L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLR 311
           SL  +P        L    L GNP  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 4/199 (2%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIM 104
              ++     N+  L  DL      T+L++S N L     A +     L  L++    + 
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           K+  +             +                    + N   +     L    ++ +
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           L ++GN+L  L   L+     L +L  + N L  +    +  L  L  L L +N + +IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 224 SSISGCCSLAEFYMGNNAL 242
               G   L   ++  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 52/208 (25%), Positives = 77/208 (37%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            +N   R+L  +P ++ K+                  L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDLPKD---------------TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +        G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L      +   N   T  P  L    K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 493 DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 552
           ++ ++     ++  + +L ++P         T L LS+N +        +    L  L L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 553 DGNP 556
           D   
Sbjct: 63  DRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 517 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYL 576
              + S  E++    N++ALPP+L         L L  N L +     L   T+  L  L
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTR--LTQL 60

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-12
 Identities = 55/265 (20%), Positives = 87/265 (32%), Gaps = 14/265 (5%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                   L  +P  I      +++ L GN +  + ++          + L      +  
Sbjct: 15  TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRA-----CRNLTILWLHSNV 67

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                               S    L  ++    P+     G +  L L R  +QEL P 
Sbjct: 68  LARIDAAAFTGLALLEQLDLSDNAQLRSVD----PATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 399 LSSC-ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 457
           L    A+LQ L L  N ++  PD     L +L+ L L  N +  VP   F+ +  L  L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRR-MQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
           L  N  +      F  L  L  LYL            +  L+ L+ L L+ N        
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243

Query: 517 FKNLTSLTELDLSDNNIS-ALPPEL 540
                 L +   S + +  +LP  L
Sbjct: 244 RPLWAWLQKFRGSSSEVPCSLPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 7e-11
 Identities = 61/229 (26%), Positives = 81/229 (35%), Gaps = 30/229 (13%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
                S     L A+P  I       ++ L  N I  +P     +C +L  L L  N + 
Sbjct: 12  PKVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA 69

Query: 417 DWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 475
               A  T L+ L  L L +N  LR V    F  +  L  L L            F  L 
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 476 HLQELYLRRMQLREAPTDILRLQ-QLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 533
            LQ LYL+   L+  P D  R    L  L L  N + S+PE  F+ L SL  L L  N +
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189

Query: 534 SALPPEL------------------------GLLEPSLQALRLDGNPLR 558
           + + P                               +LQ LRL+ NP  
Sbjct: 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED----L 64
               + +   + L+ VP  +                   Q++ L  N I  +        
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAA---------------SQRIFLHGNRISHVPAASFRAC 55

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           RNL +L + +    ++         L     L  +       P        L        
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
            L+EL          L      +N + +LP+D   D   ++ L + GN+++ +       
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 240
              L  L+  +N +    P     L RL+ L L  N + ++   +++   +L    + +N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG 289
                       + L      S+++   C    +L    +  L+ N L G
Sbjct: 236 PWVCDCRARPLWAWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 3e-09
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 5/181 (2%)

Query: 383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLS-CLKLDNNPLRQ 441
                 +  +Q +P  + +  + Q + L  N+I   P A   +  +L+      N   R 
Sbjct: 14  VTTSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRL-QQL 500
             +       + Q+           +   F  L  L  L+L R  L+E    + R    L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 501 RILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 559
           + L L  N+LQ++P+  F++L +LT L L  N IS++P        SL  L L  N +  
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 560 I 560
           +
Sbjct: 192 V 192

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (130), Expect = 7e-09
 Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 11/250 (4%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL 129
              +     L  +P  I      + + +  N I  +P     +   L      SN L  +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 130 PSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            ++    L L +    ++        P       ++  L ++   L  L   L      L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 187 TELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA 244
             L    N L  +  +T   L  L  L LH NRI S+P  +  G  SL    +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 245 L-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLR 301
           + P     L +L TL L +N L     EA      L  L L++N              L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 302 KLLLTGNPLR 311
           K   + + + 
Sbjct: 252 KFRGSSSEVP 261

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 59/339 (17%), Positives = 100/339 (29%), Gaps = 30/339 (8%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
             EL  +   L+ +PE    L  L       N +  +P       SL    + NN L AL
Sbjct: 40  AHELELNNLGLSSLPELPPHLESL---VASCNSLTELPELP---QSLKSLLVDNNNLKAL 93

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
                 L  L      SN   E   E        +   +N+     P++           
Sbjct: 94  S----DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 149

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
                     +L              +LP+   S  S    + I            L+  
Sbjct: 150 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTI 209

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTS 425
             + + + +       +  L++  N + +LP    S   L       + + + P      
Sbjct: 210 YADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP------ 263

Query: 426 LSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRR 484
                      N             P L+ L++S N +  LP     +  P L+ L    
Sbjct: 264 -----PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP-----ALPPRLERLIASF 313

Query: 485 MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSL 523
             L E P      Q L+ L +  N L+  P+  +++  L
Sbjct: 314 NHLAEVPEL---PQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 61.4 bits (147), Expect = 8e-11
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 458 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 517
              N +S          P L+EL +   +L E P    RL++L     S N L  +PE  
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAEVPE-- 321

Query: 518 KNLTSLTELDLSDNNISALPPELGLLEPSLQALRLD 553
               +L +L +  N +   P        S++ LR++
Sbjct: 322 -LPQNLKQLHVEYNPLREFPDIPE----SVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             P L  LNVS+NKL ELPA    L   + L  SFN + ++P+   +   L +     N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQN---LKQLHVEYNP 335

Query: 126 LKELPSSLGRCLNL 139
           L+E P       +L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.9 bits (138), Expect = 1e-09
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 497 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
              L  L++S N L  +P     L     L  S N+++ +P        +L+ L ++ NP
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLE---RLIASFNHLAEVPELPQ----NLKQLHVEYNP 335

Query: 557 LRSI 560
           LR  
Sbjct: 336 LREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 10/77 (12%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL++    L  +P+       + +L  S N + E+P       +L+ L +  N ++++P
Sbjct: 287 EELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFP 340

Query: 420 DAILTSLSSLSCLKLDN 436
           D       S+  L++++
Sbjct: 341 D----IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             SL E  + NN L  LPA   +L +L       N L E  V      L  L +  N L 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAE--VPELPQNLKQLHVEYNPLR 337

Query: 289 GLPPEIGKMTTLR 301
             P     +  LR
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.5 bits (124), Expect = 6e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 29  YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88
           Y N               L++L +++N + +L      L     L  S N L+E+P    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP---E 321

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATAL 116
               LK L V +N + + PD   S   L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 435
                 + +L++S N + ELP        L+ LI S N + + P+       +L  L ++
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALPP---RLERLIASFNHLAEVPE----LPQNLKQLHVE 332

Query: 436 NNPLRQVPSDGFKDIPMLQI 455
            NPLR+ P D  + +  L++
Sbjct: 333 YNPLREFP-DIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 52/338 (15%), Positives = 92/338 (27%), Gaps = 51/338 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L L+N  L  +P                     L+ L+ + N++ +L E  ++   L  L
Sbjct: 43  LELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQS---LKSL 83

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
            V +N L  L      L  L   +     + ++ +        V  +         PS  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSK---------------------LDVEGNKL 172
                 +  +                   S                         E   L
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             L+     +  + T      +L                        +S           
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
              Y  N + + + +       L  L++ +N+L E  + A   RL  L  S N L+ +P 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPE 321

Query: 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                  L++L +  NPLR           P  ++ LR
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDI------PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 53/360 (14%), Positives = 97/360 (26%), Gaps = 49/360 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             +L L +  +  L E   +L     L  S N L+ELP        LKSL V  N++  +
Sbjct: 40  AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
            D +      +    +  +      +      +     S   +  LP  L   +  +   
Sbjct: 94  SD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            E  +L  L           +        L+      G+       +L     L+   + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +           +     +              L    + E            L   N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            + +        +L +L ++ N L  L         PAL   L                 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL---------PALPPRL----------------- 306

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L     +L+ +P        + +L +  N ++E P    S   L+
Sbjct: 307 -------------ERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 57  IEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATAL 116
           + +L++ L        L +++  LS LP     L   +SL  S NS+ ++P+   S  +L
Sbjct: 29  VSRLRDCLDRQ--AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSL 83

Query: 117 VKFDCSSNQLKELPSSLGRC 136
           +  + +   L +LP  L   
Sbjct: 84  LVDNNNLKALSDLPPLLEYL 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 19/82 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+SN  L ++P    +                L++LI + N++ ++ E  +N   L  
Sbjct: 288 ELNVSNNKLIELPALPPR----------------LERLIASFNHLAEVPELPQN---LKQ 328

Query: 73  LNVSHNKLSELPAAIGELHMLK 94
           L+V +N L E P     +  L+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN 197
           +L +   SNN +  LP       ++ +L    N L  +          L +L    N L 
Sbjct: 285 SLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPELP----QNLKQLHVEYNPLR 337

Query: 198 GMPETIGSLSRLIRLD 213
             P+   S+  L R++
Sbjct: 338 EFPDIPESVEDL-RMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 476 HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 535
              EL L  + L   P        L  L  S NSL  +PE  ++L SL   + +   +S 
Sbjct: 39  QAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 536 LPPELGLLEPS 546
           LPP L  L  S
Sbjct: 96  LPPLLEYLGVS 106

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 517 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTI 564
                SL EL++S+N +  LP       P L+ L    N L  +    
Sbjct: 280 CDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELP 323

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 521 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
               EL+L++  +S+LP       P L++L    N L  +
Sbjct: 38  RQAHELELNNLGLSSLPELP----PHLESLVASCNSLTEL 73

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 50/286 (17%), Positives = 86/286 (30%), Gaps = 37/286 (12%)

Query: 276 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           R++ LDLS  +L     +P  +  +  L  L + G                 L       
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL---- 106

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                                        ++   ++ +           +T         
Sbjct: 107 ----------------------------YITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 393 QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 452
             LPP +SS  +L  +    N+I         S S L      +                
Sbjct: 139 GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ- 511
           L  +DLS N+     +  F S  + Q+++L +  L      +   + L  LDL  N +  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 512 SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPL 557
           ++P+G   L  L  L++S NN+    P+ G L           N  
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL-QRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 3e-10
 Identities = 42/252 (16%), Positives = 89/252 (35%), Gaps = 11/252 (4%)

Query: 70  LTVLNVSHNKLS---ELPAAIGELHMLKS--LDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           +  L++S   L     +P+++  L  L    +    N +  IP  I   T L     +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 125 QLKELPSSLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +          +    +   + N    +LP  ++    +  +  +GN+++    +   S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 183 WTMLTELIASKN--LLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ++ L   +      L   +P T  +L+                       +  + ++  N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQL-RLSVLDLSNNSLSGLPPEIGKMT 298
           +L+    ++G    L  LDL +N++     +   QL  L  L++S N+L G  P+ G + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 299 TLRKLLLTGNPL 310
                    N  
Sbjct: 292 RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 52  LAHNNIE-KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
           L +N I   L + L  L  L  LNVS N L       G L        + N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 44/258 (17%), Positives = 83/258 (32%), Gaps = 23/258 (8%)

Query: 204 GSLSRLIRLDLHQNRI---LSIPSSISGCCSLAEFYMGN--NALSALPAELGKLSKLGTL 258
               R+  LDL    +     IPSS++    L   Y+G   N +  +P  + KL++L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 259 DLHSNQLKEYCVEACQLRLS---VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRS 315
            +    +     +      +   +    N     LPP I  +  L  +   GN +     
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 316 SLVNGPTP-------------ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362
                 +                +    + L       +    E   ++       ++++
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQTLILSRNKIKDWPDA 421
            L   +L+    ++  +  +  LDL  N I   LP  L+    L +L +S N +      
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 422 ILTSLSSLSCLKLDNNPL 439
              +L         NN  
Sbjct: 287 -GGNLQRFDVSAYANNKC 303

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (128), Expect = 2e-08
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 477 LQELYLRRMQLREAPTDIL--RLQQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLS 529
           +Q L ++  +L +A    L   LQQ +++ L    L     + I    +   +L EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 530 DNNIS-----ALPPELGLLEPSLQALRLDGN 555
            N +       +   L      +Q L L   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 8e-06
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 498 QQLRILDLSQNSL-----QSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSL 547
             LR+L L+   +      S+        SL ELDLS+N +       L   +      L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 548 QALRLDGNPLRSIRRTILD 566
           + L L            L 
Sbjct: 429 EQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 45  VDLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           +D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 98  VSFNSI 103
           +  N +
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 453 LQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDIL-----RLQQLRILDLS 506
           +Q LD+    ++          L   Q + L    L EA    +         L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 507 QNSL-----QSIPEGFK-NLTSLTELDLSDNN 532
            N L       + +G +     + +L L +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 26/102 (25%), Positives = 35/102 (34%), Gaps = 17/102 (16%)

Query: 470 PFSSLPHLQELYLRRMQLREAPTDIL-----RLQQLRILDLSQNSL-----QSIPEGFK- 518
                  L+ L+L    + ++    L         LR LDLS N L       + E  + 
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423

Query: 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
               L +L L D   S    +       LQAL  D   LR I
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDR------LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 3e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 14/89 (15%)

Query: 382 ITKLDLSRNSI-----QELPPELSSCASLQTLILSRNKIKD-----WPDAILTSLSSLSC 431
           +  L L+   +       L   L +  SL+ L LS N + D       +++      L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 432 LKLDNNPLRQVPSDGFKDI----PMLQIL 456
           L L +    +   D  + +    P L+++
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 6e-04
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 404 SLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLR----QVPSDGFKDIPMLQILDL 458
            +Q+L +   ++ D     +L  L     ++LD+  L     +  S   +  P L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 459 SYN------IASLPENPPFSSLPHLQELYLRRMQ 486
             N      +  + +    +    +Q+L L+   
Sbjct: 63  RSNELGDVGVHCVLQG-LQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 7e-04
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 223 PSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEA----- 272
                    L   ++ +  +S     +L A L     L  LDL +N L +  +       
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 273 --CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
                 L  L L +   S    +      L+ L      LR +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR-----LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 356 SVTSKELSLEGMNLS-AIPSEIWEA-GEITKLDLSRNSI-----QELPPELSSCASLQTL 408
           S+  + L ++   LS A  +E+     +   + L    +     +++   L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 409 ILSRNKIKDWPDAILTSLSSLSCLKL 434
            L  N++ D     +         K+
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKI 86

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC--LNLSDFKASNNCIT 150
           ++SLD+    +                  S  +  EL   L +C  + L D   +     
Sbjct: 4   IQSLDIQCEEL------------------SDARWAELLPLLQQCQVVRLDDCGLTEARCK 45

Query: 151 SLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIAS 192
            +   L     +++L++  N+L       +   L      + +L   
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTEL 189
           R L L+D   S++  +SL   L     + +LD+  N L       L  ++     +L +L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 190 IASKNLLNG 198
           +      + 
Sbjct: 432 VLYDIYWSE 440

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 7/132 (5%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           LDL    I  +    ++      +  S N+I+         L  L  L ++NN + ++  
Sbjct: 23  LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLVNNNRICRIGE 80

Query: 445 DGFKDIPMLQILDLS-YNIASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQ 499
              + +P L  L L+  ++  L +  P +SL  L  L + R  +          I ++ Q
Sbjct: 81  GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQ 140

Query: 500 LRILDLSQNSLQ 511
           +R+LD  +  L+
Sbjct: 141 VRVLDFQKVKLK 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 13/46 (28%), Positives = 16/46 (34%)

Query: 497 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL 542
             + R LDL    +  I      L     +D SDN I  L     L
Sbjct: 17  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-05
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 467 ENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTEL 526
           +   +++    +EL LR  ++         L Q   +D S N ++ +  GF  L  L  L
Sbjct: 10  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTL 68

Query: 527 DLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
            +++N I  +   L    P L  L L  N L  +
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 102

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
                     ++   +          +L++   +NN +  L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           +EL L G  +  I +      +   +D S N I++L         L+TL+++ N+I    
Sbjct: 21  RELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGF-PLLRRLKTLLVNNNRICRIG 79

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPSDGF----KDIPMLQILDLSYNIASLPENPPFSSLP 475
           + +  +L  L+ L L NN L ++         K +  L IL                 +P
Sbjct: 80  EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 139

Query: 476 HLQELYLRRMQLRE 489
            ++ L  ++++L+E
Sbjct: 140 QVRVLDFQKVKLKE 153

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP 107
           + L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N++  + 
Sbjct: 1   RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 108 DEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
                          +N+L++      L  C  L       N +     
Sbjct: 60  GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
           L L     L++   +     +    + +N L ALP  L  L  L  L    N L+     
Sbjct: 3   LHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 272 ACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
           A   RL  L L NN L        +     L  L L GN L              + + L
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGIQERL 112

Query: 330 RSRLP 334
              LP
Sbjct: 113 AEMLP 117

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 5e-07
 Identities = 22/122 (18%), Positives = 38/122 (31%), Gaps = 26/122 (21%)

Query: 454 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL------------- 500
           ++L L++    L        L  +  L L   +LR  P  +  L+ L             
Sbjct: 1   RVLHLAHK--DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 501 ---------RILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQA 549
                    + L L  N LQ     +   +   L  L+L  N++         L   L +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 550 LR 551
           + 
Sbjct: 119 VS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 32/140 (22%), Positives = 48/140 (34%), Gaps = 28/140 (20%)

Query: 385 LDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
           L L+   +  L   L     +  L LS N+++  P A+  +L  L  L+  +N L  V  
Sbjct: 3   LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDG 60

Query: 445 DGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRIL 503
               ++P LQ L L  N +       P  S P L  L                       
Sbjct: 61  --VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL----------------------- 95

Query: 504 DLSQNSLQSIPEGFKNLTSL 523
           +L  NSL       + L  +
Sbjct: 96  NLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 419
           + L L   +L+ +   + +   +T LDLS N ++ LPP L++   L+ L  S N +++  
Sbjct: 1   RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 420 DAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYN-IASLPENPP--FSSLP 475
                    L  L L NN L+Q  +       P L +L+L  N +             LP
Sbjct: 60  GVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 476 HLQEL 480
            +  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
             +   L  L   L + L ++    S+N + +LP  LA    +  L    N L  +    
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 180 IASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
                 L EL+   N L      + + S  RL+ L+L  N +            +
Sbjct: 63  N--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194
           R L+L+     +  +T L   L     ++ LD+  N+L  L   L A   +     +   
Sbjct: 1   RVLHLA-----HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
                 + + +L RL  L L  NR+   +    +  C  L    +  N+L        +L
Sbjct: 55  --LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 253 SKL 255
           +++
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 40/157 (25%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           VL L++  L+ L   + ++  +  L L+ N LR L  +L       +L+           
Sbjct: 2   VLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA---------- 50

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP- 397
                                        N       +     + +L L  N +Q+    
Sbjct: 51  ---------------------------SDNALENVDGVANLPRLQELLLCNNRLQQSAAI 83

Query: 398 -ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
             L SC  L  L L  N +             L  + 
Sbjct: 84  QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 120

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 29/182 (15%), Positives = 56/182 (30%), Gaps = 13/182 (7%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPEDLADCSKM--SKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D    N       + L                   +
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND----NELGRISSDGLFGRLPHLVKLELKRNQLTGI 69

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLA 233
             N    +  +    +    +     +    L +L  L+L+ N+I  + P S     SL 
Sbjct: 70  EPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPP 292
              + +N  +           L    L+    +  C    ++R + + DL ++       
Sbjct: 130 SLNLASNPFNCNCHLAWFAEWLRKKSLNGGAAR--CGAPSKVRDVQIKDLPHSEFKCSSE 187

Query: 293 EI 294
             
Sbjct: 188 NS 189

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 35/194 (18%), Positives = 59/194 (30%), Gaps = 16/194 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +D +   L  +P +I       +LLL  N L  + S  + G  P L+K 
Sbjct: 2   CPAMCHCEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
              R         +      I          KE+                  ++  L+L 
Sbjct: 60  ELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI---------SNKMFLGLHQLKTLNLY 110

Query: 389 RNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 447
            N I  + P       SL +L    +   +    +      L    L+    R       
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLN-LASNPFNCNCHLAWFAEWLRKKSLNGGAAR---CGAP 166

Query: 448 KDIPMLQILDLSYN 461
             +  +QI DL ++
Sbjct: 167 SKVRDVQIKDLPHS 180

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 425 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLR 483
             +++ C       L+++P D          L L+ N +  +  +  F  LPHL +L L+
Sbjct: 9   EGTTVDC---TGRGLKEIPRDIPLH---TTELLLNDNELGRISSDGLFGRLPHLVKLELK 62

Query: 484 RMQLREAPTDILRLQQLRILDLSQNS--LQSIPEGFKNLTSLTELDLSDNNISALPPE 539
           R QL     +               +   +   + F  L  L  L+L DN IS + P 
Sbjct: 63  RNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 5e-07
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 452 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR-LQQLRILDLSQNSL 510
              IL L+ N      N  F+     +        L E P D+        ILD+S+  +
Sbjct: 154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 213

Query: 511 QSIPEG-FKNLTSLTELDLSDNNISALPP 538
            S+P    +NL  L        N+  LP 
Sbjct: 214 HSLPSYGLENLKKLRARST--YNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (105), Expect = 9e-06
 Identities = 27/234 (11%), Positives = 64/234 (27%), Gaps = 35/234 (14%)

Query: 358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIK 416
           +++    +   ++ IPS++       +L      ++ +     S    L+ + +S+N + 
Sbjct: 9   SNRVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66

Query: 417 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 476
           +  +A + S                +  +      +  +  L  +   +   P    +  
Sbjct: 67  EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS 126

Query: 477 LQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQS------------------------ 512
           LQ++ L         T           +     L                          
Sbjct: 127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDN 186

Query: 513 ------IPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
                   + F   +    LD+S   I +LP         L+A       L+ +
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 402 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 461
               +  +   N +++ P+ +    S    L +    +  +PS G +++  L+     YN
Sbjct: 176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST-YN 234

Query: 462 IASLP 466
           +  LP
Sbjct: 235 LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 30/234 (12%), Positives = 60/234 (25%), Gaps = 23/234 (9%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
           C     V     + ++ +P ++       +L      LR ++    +G        +   
Sbjct: 6   CHCSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 63

Query: 333 LPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI 392
                      +    +         +          +    +           L     
Sbjct: 64  DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK 123

Query: 393 -------------------QELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 433
                               E    +        L L++N I++  +             
Sbjct: 124 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL 183

Query: 434 LDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 486
            DNN L ++P+D F       ILD+S   I SLP      +L  L+      ++
Sbjct: 184 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-GLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 399 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 444
               +    L +SR +I   P   L +L  L         L+++P+
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLR--ARSTYNLKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 64  LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP 107
                   +L++S  ++  LP+  +  L  L++   S  ++ K+P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLP 239

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 7e-07
 Identities = 28/186 (15%), Positives = 51/186 (27%), Gaps = 19/186 (10%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           IT L      +  +   +    +L  L L  N+I D       +  +   L  +      
Sbjct: 43  ITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSL---------------PHLQELYLRRMQ 486
             +       +        ++  L        L                   +       
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161

Query: 487 LREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPS 546
                T +  L +L  L    N +  I     +L +L E+ L +N IS + P       +
Sbjct: 162 QVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANT--SN 218

Query: 547 LQALRL 552
           L  + L
Sbjct: 219 LFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 35/213 (16%), Positives = 65/213 (30%), Gaps = 10/213 (4%)

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           L+    +    + + +   +A    ++ L      ++ +   +  +  L  L L  N + 
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQIT 76

Query: 312 TLRS-----SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            L        +             S +   +  +        IT  T L+  S    L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 367 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSL 426
                            +     N+       L++ + L TL    NKI D     L SL
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASL 194

Query: 427 SSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 459
            +L  + L NN +  V      +   L I+ L+
Sbjct: 195 PNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 21/196 (10%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
              K+   ++++ +     +    + TL      +       +  L++L  L+L +N + 
Sbjct: 20  NAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQIT 76

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH----------------LQELYLRR 484
            +             L  +            S                         L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136

Query: 485 MQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLE 544
              +      L            N+  S      NL+ LT L   DN IS + P   L  
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL-- 194

Query: 545 PSLQALRLDGNPLRSI 560
           P+L  + L  N +  +
Sbjct: 195 PNLIEVHLKNNQISDV 210

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      +  + E ++ L  L  L +  N++++L        + +            
Sbjct: 43  ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +   +    +        + L     L         I+ L          +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL------AGLTNLQY 155

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +      V     +A+ + LT L A  N ++ +   + SL  LI + L  N+I  +   +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PL 213

Query: 227 SGCCSLAEFYMGN 239
           +   +L    + N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 3e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
            L     +    + +++      +L  + +L      +  I   +     L+  +   NQ
Sbjct: 17  ALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           + +L        NL+           L    A     S   ++     +     +A  + 
Sbjct: 75  ITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           L  L    N +  +    G  +       +     S  + ++    L      +N +S +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDI 188

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L  L  L                        + L NN +S + P +   + L  + L
Sbjct: 189 S-PLASLPNL----------------------IEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 306 T 306
           T
Sbjct: 225 T 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 463 ASLPENPPFSS------LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 516
            S+ +    +       L +  ++   +  + +  T    L  +  L      + +I EG
Sbjct: 1   GSITQPTAINVIFPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTI-EG 58

Query: 517 FKNLTSLTELDLSDNNISALPPELGL 542
            + L +L  L+L DN I+ L P   L
Sbjct: 59  VQYLNNLIGLELKDNQITDLAPLKNL 84

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 30/171 (17%), Positives = 53/171 (30%), Gaps = 11/171 (6%)

Query: 382 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           I ++  + + I+ +   +    ++  L L+ NK+ D           L+ LK        
Sbjct: 48  IDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--------LANLKNLGWLFLD 98

Query: 442 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLR 501
                            S ++     +     +   Q   L     +     +L      
Sbjct: 99  ENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 158

Query: 502 ILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 552
                +++  S       LT L  L LS N+IS L    GL   +L  L L
Sbjct: 159 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGL--KNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 239 NNALSALPAELGK------LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
            +    +P  + +       ++    +L    + +   +     +  +  +N+ +  +  
Sbjct: 4   GSETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 63

Query: 293 EIGKMTTLRKLLLTGNPLRT------LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            I  +  + KL L GN L        L++          +K L S     +    S    
Sbjct: 64  -IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
            +  +   + +   E    G N     + +    ++  L L  N I ++ P L+    LQ
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQ 181

Query: 407 TLILSRNKIKDWPDAILTSLSSLSCLKLDN 436
            L LS+N I D     L  L +L  L+L +
Sbjct: 182 NLYLSKNHISDLRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 11/181 (6%)

Query: 381 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLR 440
           E  K +L + S+ +   + +   S+  +I + + IK      +  L +++ L L+ N L 
Sbjct: 25  ETIKDNLKKKSVTDAVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 441 QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQL 500
                  K +  L+ L   +   +  ++          +              ++ L QL
Sbjct: 82  -----DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 501 RILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
             L L  N   +       LT L  L L DN IS + P  GL    LQ L L  N +  +
Sbjct: 137 ESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVPLAGL--TKLQNLYLSKNHISDL 193

Query: 561 R 561
           R
Sbjct: 194 R 194

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 5e-06
 Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 453 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL-- 510
            Q LDL      L  +P   +      L  R             + +L  L+LS N L  
Sbjct: 24  QQALDLK----GLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYR 79

Query: 511 -QSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 560
              +    +   +L  L+LS N + +      +    L+ L LDGN L   
Sbjct: 80  LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    +E+LK  +      +   +    L   P  +   ++   L+   +    +     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 112 SATALVKFDCSSNQL---KELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 167
           +   L+  + S+N+L    ++ S + +  NL     S N + S  E D     K+ +L +
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200
           +GN L+    +     + + E       L+G  
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 495 LRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS-----ALPPELGLLEPSLQA 549
           +  + L++  ++    +S+        S+ E+ LS N I       L   +      L+ 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK-KDLEI 63

Query: 550 LRLDGNPLRSIRRTI 564
                     ++  I
Sbjct: 64  AEFSDIFTGRVKDEI 78

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.6 bits (106), Expect = 9e-06
 Identities = 46/339 (13%), Positives = 91/339 (26%), Gaps = 42/339 (12%)

Query: 43  EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           E   L+   +   + + +   L     +  + +S N +       L   I     L+  +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 98  VSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDF-------------- 142
            S     ++ DEI  A   L++      +L  +  S       +                
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 143 ---------------KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                           A      ++ +   +   +  +    N+L   S    A      
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
            L+ +  ++       G    L+    +   +  +    +    L    +     S    
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-----LPPEI-GKMTTLR 301
               L+        +  + +   +   + L  L L  N +       L   I  KM  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
            L L GN        +V+          R  L E +D E
Sbjct: 306 FLELNGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 354 RLSVTSKELSLEGM---NLSAIPSEIWEAGEITKLDLSRNSI-----QELPPELSSCASL 405
           R S+  K L L+ +   +  ++ + + E   + ++ LS N+I     + L   ++S   L
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 406 QTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ 441
           +    S        D I  +L  L    L    L  
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 97

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 39/335 (11%), Positives = 83/335 (24%), Gaps = 21/335 (6%)

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSN 284
           SL    +      ++ A L +   +  + L  N +              +  L + + S+
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 344
                +  EI +   L    L   P       L             ++ P  +     T 
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCP------KLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 404
            E L      L   +       +   A+  +   A  +  +   RN ++    +  +   
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 405 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 464
               +L   K+             L         L+ +         +          + 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 465 LPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSL-----QSIPEG-FK 518
                   +   L     R           L    L+ L L  N +     +++     +
Sbjct: 243 PNLRELGLNDCLLSA---RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 519 NLTSLTELDLSDNNISALPPELGLLEPSLQALRLD 553
            +  L  L+L+ N  S     +  +          
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 334

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 1e-05
 Identities = 20/147 (13%), Positives = 41/147 (27%), Gaps = 3/147 (2%)

Query: 397 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 456
           P+         L  +R+   D    +  + +       +   L+ +     + +  L+ L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIP 514
            +  +         F   P L  L L    L       ++   L+ L LS N L      
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121

Query: 515 EGFKNLTSLTELDLSDNNIS-ALPPEL 540
              +         + +  +       L
Sbjct: 122 RWLQRWEEEGLGGVPEQKLQCHGQGPL 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHS 262
                  L   ++  L     + G  +L E Y+     L  L       L +L  L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 263 NQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           + L+    +A     RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L    +     L  L   K
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL--SALPAELG 250
           + L  + P+      RL RL+L  N + S+        SL E  +  N L  S     L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 251 KLSKLGTLDLHSNQLK 266
           +  + G   +   +L+
Sbjct: 126 RWEEEGLGGVPEQKLQ 141

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 12/189 (6%)

Query: 362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 421
             L   N++   S+  +  ++T L   R  I+ +   +    +L  +  S N++ D    
Sbjct: 23  TVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP- 79

Query: 422 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 481
                       +D        +D      +  +  L+     + +  P  +L +L  L 
Sbjct: 80  -----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 134

Query: 482 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELG 541
           L    + +           ++   S       P    NLT+L  LD+S N +S +     
Sbjct: 135 LSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK 192

Query: 542 LLEPSLQAL 550
           L   +L++L
Sbjct: 193 L--TNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 19  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 76

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I         +     ++             L             +   D+     ++ L
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +        +S+    S     + +   +      + + +L+ L RLD+  N++  I   
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-V 189

Query: 226 ISGCCSL 232
           ++   +L
Sbjct: 190 LAKLTNL 196

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 37/246 (15%), Positives = 72/246 (29%), Gaps = 41/246 (16%)

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSR 412
           LS            +    +E +    +  +DLS + I+   L   LS C+ LQ L L  
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 413 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFS 472
            ++ D     L   S+L  L L         +         ++ +L+ +           
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 473 SLPHLQELYLRRMQLR----------------------------------EAPTDILRLQ 498
                    + ++ L                                   +   +  +L 
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 499 QLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 556
            L+ L LS+              + +L  L +           L LL+ +L  L+++ + 
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG---TLQLLKEALPHLQINCSH 257

Query: 557 LRSIRR 562
             +I R
Sbjct: 258 FTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 35/262 (13%), Positives = 86/262 (32%), Gaps = 18/262 (6%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-- 105
           Q L L   N+            +       + + +  A       ++ +D+S + I    
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVST 62

Query: 106 IPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNL---SDFKASNNCITSLPEDLADCSK 161
           +   +   + L        +L   + ++L +  NL   +    S     +L   L+ CS+
Sbjct: 63  LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 122

Query: 162 MSKLDVEGNKLTV---LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
           + +L++          +   +      +T+L  S    N     + +L R     +H + 
Sbjct: 123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 182

Query: 219 ILSIPSSISGCCSLAEFYM--------GNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             S+           +             + +     ELG++  L TL +    + +  +
Sbjct: 183 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV-FGIVPDGTL 241

Query: 271 EACQLRLSVLDLSNNSLSGLPP 292
           +  +  L  L ++ +  + +  
Sbjct: 242 QLLKEALPHLQINCSHFTTIAR 263

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236
            +++A+     EL      +  M  T+ +L     L L  N I  I  S+SG  +L    
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILS 76

Query: 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEI 294
           +G N +  +         L  L +  NQ+         + L VL +SNN ++      ++
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
             +  L  LLL GNPL        N  T      +  RLP
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLP 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	583
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.55
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.2
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.95

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=1.5e-26  Score=226.60  Aligned_cols=340  Identities=24%  Similarity=0.318  Sum_probs=179.1

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +.+|++|+++++.|+++ +.++++++|++|++++|+++.++. ++++++|++|++++|.+..++ .+.++++|+.|++++
T Consensus        43 l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~~~~  119 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN  119 (384)
T ss_dssp             HTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCS
T ss_pred             hCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccccccc-ccccccccccccccc
Confidence            45788888888888877 367778888888888888887753 777888888888888777664 367777788888777


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCccc-ccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDL-ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l-~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (583)
                      +.++.++. ......+.......+.+..+.... .................     .+.............+.... ...
T Consensus       120 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~  192 (384)
T d2omza2         120 NQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLDISSNKVSD-ISV  192 (384)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCG-----GGTTCTTCCEEECCSSCCCC-CGG
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccchhh-----hhcccccccccccccccccc-ccc
Confidence            77765542 334455666666555554332111 11111111111111111     12222223333333322221 122


Q ss_pred             hcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEEC
Q 007962          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (583)
Q Consensus       203 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l  282 (583)
                      ...+++++.+.++++.+..++. ...+++|+++++++|.++.++ .+..+++|+.+++++|                   
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-------------------  251 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN-------------------  251 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-------------------
T ss_pred             cccccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccC-------------------
Confidence            3344455555555554444321 333444555555555444432 3344444555444444                   


Q ss_pred             cCCCCCCCChhhcccCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhcccccccee
Q 007962          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (583)
Q Consensus       283 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  362 (583)
                         .+.++++ ++.+++|++++++++.+..+.                                                
T Consensus       252 ---~l~~~~~-~~~~~~L~~L~l~~~~l~~~~------------------------------------------------  279 (384)
T d2omza2         252 ---QISNLAP-LSGLTKLTELKLGANQISNIS------------------------------------------------  279 (384)
T ss_dssp             ---CCCCCGG-GTTCTTCSEEECCSSCCCCCG------------------------------------------------
T ss_pred             ---ccCCCCc-ccccccCCEeeccCcccCCCC------------------------------------------------
Confidence               4444332 455566666666665443221                                                


Q ss_pred             ecCCCCCccCChhhhccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccC
Q 007962          363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV  442 (583)
Q Consensus       363 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~  442 (583)
                                  .+..++.++.+.+..+.+..++ .+..+++++.|++++|++.+...  +..+++|++|++++|+++++
T Consensus       280 ------------~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         280 ------------PLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             ------------GGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             ------------cccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCCC
Confidence                        1112334455555555554432 24455556666666665555432  45556666666666665554


Q ss_pred             CCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccc
Q 007962          443 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM  485 (583)
Q Consensus       443 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  485 (583)
                      +  .+.++++|++|++++|++++..+  +..+++|+.|+|++|
T Consensus       345 ~--~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         345 S--SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             G--GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             h--hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            3  25556666666666666554432  555666666666554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=4.2e-26  Score=223.40  Aligned_cols=165  Identities=26%  Similarity=0.381  Sum_probs=100.4

Q ss_pred             CCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCC
Q 007962          380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS  459 (583)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  459 (583)
                      ++|+++++++|.+++++ .+..+++|+.+++++|.+.+...  +..+++|+.++++++++..+..  +..++.++.++++
T Consensus       219 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~  293 (384)
T d2omza2         219 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  293 (384)
T ss_dssp             TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             CCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCc--ccccccccccccc
Confidence            45555566655555543 34555666666666666655443  4556666666666666655432  5556666666666


Q ss_pred             CCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCCC
Q 007962          460 YNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE  539 (583)
Q Consensus       460 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~  539 (583)
                      +|.++...  .+..+++++.|++++|+++.++ .+..+++|++|++++|.++.++ .+.++++|++|++++|+|+.+++ 
T Consensus       294 ~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-  368 (384)
T d2omza2         294 ENQLEDIS--PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-  368 (384)
T ss_dssp             SSCCSCCG--GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-
T ss_pred             cccccccc--ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-
Confidence            66665432  2555666666777666666654 3556677777777777766664 46667777777777777766654 


Q ss_pred             ccccccccceeeccCC
Q 007962          540 LGLLEPSLQALRLDGN  555 (583)
Q Consensus       540 ~~~~~~~L~~L~l~~~  555 (583)
                      + ..+++|+.|+|++|
T Consensus       369 l-~~l~~L~~L~L~~N  383 (384)
T d2omza2         369 L-ANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-TTCTTCSEEECCCE
T ss_pred             h-ccCCCCCEeeCCCC
Confidence            2 22367777777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2e-24  Score=203.57  Aligned_cols=243  Identities=22%  Similarity=0.321  Sum_probs=208.0

Q ss_pred             hhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCccc-chhh
Q 007962           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (583)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l-~~~~   87 (583)
                      ...++||++++++++|+.++               +++++|++++|+|+.+++ .|.++++|++|++++|.+..+ +.+|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEecCCCCCccCCCCC---------------CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence            46789999999999999874               479999999999999986 799999999999999999988 4589


Q ss_pred             hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCc-ccccCCCCCEEEccccccC---CCCcccccCCCCc
Q 007962           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~~l~~l~~L~  163 (583)
                      .++++|++|++++|.++.+|..+  ...++.|.+..+.+..++. .+.....++.+....+...   .....+..+++|+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hCCCccCEecccCCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence            99999999999999999888654  4578999999999887764 4667788889998887654   3345688899999


Q ss_pred             EEEecCCcceeechhhhcccccCcEEEcCCCcCCc-cchhhcCCccccEEEccCCcCccc-CCCCcCCCCCcEEEcCCCC
Q 007962          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA  241 (583)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~  241 (583)
                      .+++.++.+..++..   .+++|++|+++++.... .+..+..++.+++|++++|.+..+ +..+..+++|++|++++|.
T Consensus       154 ~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         154 YIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             EEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             ccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence            999999998887644   35789999999998864 456788889999999999999876 5677889999999999999


Q ss_pred             CccCchhhhCCCCCCEEEccCCccccccccc
Q 007962          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEA  272 (583)
Q Consensus       242 ~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~  272 (583)
                      ++.+|..+..+++|++|++++|+++.++...
T Consensus       231 L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         231 LVKVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             ccccccccccccCCCEEECCCCccCccChhh
Confidence            9999999999999999999999988776544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.9e-23  Score=192.19  Aligned_cols=82  Identities=30%  Similarity=0.372  Sum_probs=47.8

Q ss_pred             CcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCC-CCcCCCCCcEEEcCCCCCccC-chhhhCCCCCCEEEccCC
Q 007962          186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSN  263 (583)
Q Consensus       186 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~  263 (583)
                      .+.++-++..++.+|..+.  +++++|++++|.++.++. .|..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            4455555555555555442  456666666666666654 456666666666666666654 334566666666666666


Q ss_pred             cccccc
Q 007962          264 QLKEYC  269 (583)
Q Consensus       264 ~l~~~~  269 (583)
                      +++.++
T Consensus        90 ~l~~l~   95 (305)
T d1xkua_          90 QLKELP   95 (305)
T ss_dssp             CCSBCC
T ss_pred             ccCcCc
Confidence            555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-22  Score=185.09  Aligned_cols=194  Identities=28%  Similarity=0.333  Sum_probs=135.9

Q ss_pred             hhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhh-HhhCCCCCCcEEEcCCCCCcccchhh
Q 007962            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAI   87 (583)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~-~~~~~~~~L~~L~L~~~~l~~l~~~~   87 (583)
                      ..+.++||++++++++|+.++               +++++|+|++|.|+.++ ..|.++++|++|+|++|.++.++ .+
T Consensus        10 ~~~~~v~C~~~~L~~iP~~lp---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~   73 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VD   73 (266)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CC
T ss_pred             CCCeEEEccCCCCCeeCcCcC---------------cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cc
Confidence            345668999999999998774               46899999999999887 46889999999999999888775 35


Q ss_pred             hCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCCCc-ccccCCCCcEE
Q 007962           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKL  165 (583)
Q Consensus        88 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~~-~l~~l~~L~~L  165 (583)
                      +.+++|++|++++|.++..+..+.++++|+.|+++++.+..++ ..+..++++++|++.+|.+..++. .+..+++++.+
T Consensus        74 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l  153 (266)
T d1p9ag_          74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (266)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhc
Confidence            6788888888888888877777778888888888887776554 345566677777777766665543 24455666666


Q ss_pred             EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCc
Q 007962          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  218 (583)
                      ++++|++..+....|..+++|++|++++|.++.+|..+..+++|+.|++++|.
T Consensus       154 ~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            66666666655555555555555555555555555444444555555555443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.7e-21  Score=178.86  Aligned_cols=195  Identities=28%  Similarity=0.379  Sum_probs=172.7

Q ss_pred             ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCcCCc-cccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCC
Q 007962          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN  436 (583)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~  436 (583)
                      .+.+++.++++++.+|..+.  +.+++|++++|.++.++. .+..+++|++|++++|.++.++.  ++.+++|+.|++++
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L~~L~Ls~   86 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSH   86 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCS
T ss_pred             CCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--cccccccccccccc
Confidence            45667888888998887663  579999999999999874 68899999999999999987654  47899999999999


Q ss_pred             CCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccch-hccCcccEEeCCCCcCCccch
Q 007962          437 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIPE  515 (583)
Q Consensus       437 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~n~l~~l~~  515 (583)
                      |++...+.. +.++++|+.|+++++.+.......+..++++++|++++|.++.++... ..++.++.+++++|.++.++.
T Consensus        87 N~l~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~  165 (266)
T d1p9ag_          87 NQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (266)
T ss_dssp             SCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             ccccccccc-cccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCc
Confidence            999887654 889999999999999999988888999999999999999999887654 468999999999999998764


Q ss_pred             -hhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962          516 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       516 -~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~  558 (583)
                       .+..+++|++|++++|+|+.+|+.++.. ++|+.|+++||++.
T Consensus       166 ~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~-~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECCSCCBC
T ss_pred             cccccccccceeecccCCCcccChhHCCC-CCCCEEEecCCCCC
Confidence             4889999999999999999999998876 89999999999985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=3.3e-22  Score=188.90  Aligned_cols=240  Identities=25%  Similarity=0.337  Sum_probs=196.8

Q ss_pred             CccEEEcCCCcch---hhhHhhCCCCCCcEEEcCC-CCCc-ccchhhhCCCCccEEEccCCcccc-CCccccccCcccEE
Q 007962           46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKF  119 (583)
Q Consensus        46 ~L~~L~ls~~~i~---~l~~~~~~~~~L~~L~L~~-~~l~-~l~~~~~~~~~L~~L~L~~~~l~~-l~~~~~~l~~L~~L  119 (583)
                      .++.|+|+++.++   .+|..++++++|++|+|++ |++. .+|..|+++++|++|++++|.+.. .+..+..+++|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5889999999887   5788999999999999987 5676 789999999999999999998885 45568889999999


Q ss_pred             EcCCCcCC-cCCcccccCCCCCEEEccccccC-CCCcccccCCCC-cEEEecCCcceeechhhhcccccCcEEEcCCCcC
Q 007962          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (583)
Q Consensus       120 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~l~~L-~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  196 (583)
                      +++.|.+. .+|..+..++.++++++++|.+. .+|..+..+..+ +.++++++++.......+..+..+ .+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            99999866 66788999999999999999887 677888888776 789999999887776656665444 688887766


Q ss_pred             C-ccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCc-cCchhhhCCCCCCEEEccCCcccc-cccccc
Q 007962          197 N-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE-YCVEAC  273 (583)
Q Consensus       197 ~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~~  273 (583)
                      . .++..+..+++++.++++++.+...+..+..+++|+.|++++|.++ .+|..++++++|++|++++|+++. +|    
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP----  285 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP----  285 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC----
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC----
Confidence            4 4666777888999999999988766667888899999999999998 788899999999999999988762 32    


Q ss_pred             cccccEEECcCCCCCCCChhhcccCCCcEEecCCCc
Q 007962          274 QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (583)
Q Consensus       274 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~  309 (583)
                                         .++++++|+.+++.+|+
T Consensus       286 -------------------~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         286 -------------------QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -------------------CSTTGGGSCGGGTCSSS
T ss_pred             -------------------CcccCCCCCHHHhCCCc
Confidence                               23456666677777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-22  Score=185.01  Aligned_cols=218  Identities=24%  Similarity=0.344  Sum_probs=151.9

Q ss_pred             ceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcccch-hhhC
Q 007962           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (583)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~l~~-~~~~   89 (583)
                      .+++|++++++++|..++               +++++|+|++|+|+.++. .|.++++|++|+++++.+..++. .+..
T Consensus        14 ~~v~c~~~~L~~iP~~ip---------------~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~   78 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC---------------TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             eEEEcCCCCCCccCCCCC---------------CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccc
Confidence            468999999999999875               368999999999999985 69999999999999999987755 6778


Q ss_pred             CCCccEEEccCC-ccccC-CccccccCcccEEEcCCCcCCcCC-cccccCCCCCEEEccccccCCCC-cccccCCCCcEE
Q 007962           90 LHMLKSLDVSFN-SIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKL  165 (583)
Q Consensus        90 ~~~L~~L~L~~~-~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~l~~l~~L~~L  165 (583)
                      +..++.+....+ .++.+ +..+.++++|++|++++|.+..++ ..+...++|+.++++++.+..++ ..+..+++|++|
T Consensus        79 ~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L  158 (284)
T d1ozna_          79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (284)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhc
Confidence            888998887644 56555 445778888888888888877554 35566777777777777777664 346666777777


Q ss_pred             EecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccC
Q 007962          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (583)
Q Consensus       166 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l  245 (583)
                      ++++|.+..+...+|.++++|+.+++++|.+..+.                      |..|..+++|++|++++|.+..+
T Consensus       159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~----------------------~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH----------------------PHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----------------------TTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccccCcccccchhhhccccccchhhhhhccccccC----------------------hhHhhhhhhcccccccccccccc
Confidence            77777777666665666666666666655554331                      33344444444555555444433


Q ss_pred             c-hhhhCCCCCCEEEccCCccc
Q 007962          246 P-AELGKLSKLGTLDLHSNQLK  266 (583)
Q Consensus       246 ~-~~l~~~~~L~~L~l~~~~l~  266 (583)
                      + ..++.+++|+++++++|.+.
T Consensus       217 ~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         217 PTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccccccccCEEEecCCCCC
Confidence            3 34555566666666665544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=2.3e-22  Score=190.00  Aligned_cols=240  Identities=25%  Similarity=0.362  Sum_probs=205.9

Q ss_pred             hhceeeccCCcCC---CCChhhhhcccccCCCCCcccccCccEEEcCC-Ccch-hhhHhhCCCCCCcEEEcCCCCCccc-
Q 007962           10 TSGSLNLSNRSLR---DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAH-NNIE-KLKEDLRNLPLLTVLNVSHNKLSEL-   83 (583)
Q Consensus        10 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~-~~i~-~l~~~~~~~~~L~~L~L~~~~l~~l-   83 (583)
                      .++.+|++++++.   .+|+.+.             ++++|++|+|++ |.++ .+|..|+++++|++|+|++|.+..+ 
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-------------~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~  117 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-------------NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI  117 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-------------GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-------------cCccccccccccccccccccccccccccccchhhhccccccccc
Confidence            4788999998887   3666553             479999999996 6777 7999999999999999999999866 


Q ss_pred             chhhhCCCCccEEEccCCccc-cCCccccccCcccEEEcCCCcCC-cCCcccccCCCC-CEEEccccccCC-CCcccccC
Q 007962           84 PAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNL-SDFKASNNCITS-LPEDLADC  159 (583)
Q Consensus        84 ~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~L-~~L~l~~~~~~~-l~~~l~~l  159 (583)
                      +..+..+.+|+++++++|.+. .+|..+.++++|+++++++|.+. .+|..+..+..+ +.++++++.+.. .+..+..+
T Consensus       118 ~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l  197 (313)
T d1ogqa_         118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL  197 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred             cccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999766 78889999999999999999987 778888887776 889999998874 45556665


Q ss_pred             CCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCc-ccCCCCcCCCCCcEEEcC
Q 007962          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMG  238 (583)
Q Consensus       160 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~  238 (583)
                      .. ..+++..+.........+..++.++.+++.++.+...+..++.+++|+.|++++|++. .+|..+..+++|++|+++
T Consensus       198 ~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         198 NL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             cc-cccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            54 4799999988877777788899999999999999877777888999999999999998 789999999999999999


Q ss_pred             CCCCc-cCchhhhCCCCCCEEEccCCc
Q 007962          239 NNALS-ALPAELGKLSKLGTLDLHSNQ  264 (583)
Q Consensus       239 ~~~~~-~l~~~l~~~~~L~~L~l~~~~  264 (583)
                      +|.++ .+| .++++++|+.+++.+|+
T Consensus       277 ~N~l~g~iP-~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         277 FNNLCGEIP-QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SSEEEEECC-CSTTGGGSCGGGTCSSS
T ss_pred             CCcccccCC-CcccCCCCCHHHhCCCc
Confidence            99999 566 46778899999998886

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.1e-20  Score=170.88  Aligned_cols=154  Identities=29%  Similarity=0.409  Sum_probs=84.6

Q ss_pred             CccEEEcC-CCCCCcCC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962          381 EITKLDLS-RNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (583)
Q Consensus       381 ~L~~L~l~-~~~l~~l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  458 (583)
                      .+..+.+. .+.+..++ ..+..+++|++|++++|.+.......+....+|+.+++++|.++.++...|..+++|+.|++
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l  160 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhccc
Confidence            34444443 22344432 34555566666666666555555555555566666666666666555555555566666666


Q ss_pred             CCCccCCCCCCCCCCCCccceEeccccccccc-ccchhccCcccEEeCCCCcCCccc-hhhcCCCCCCEEeCCCCCCC
Q 007962          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNIS  534 (583)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~l~  534 (583)
                      ++|.+....+.++..+++|+++++++|+++.+ |..+..+++|++|++++|.+.+++ ..+..+++|++|++++|++.
T Consensus       161 ~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            66655555555555556666666666655543 344455555666666666555443 33555555666666555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.4e-18  Score=165.55  Aligned_cols=315  Identities=25%  Similarity=0.308  Sum_probs=173.4

Q ss_pred             CCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccC
Q 007962          137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ  216 (583)
Q Consensus       137 ~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~  216 (583)
                      .++++|+++++.++.+|+.   .++|++|++++|++..++..    ..+|+.|++.++.++.++..   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhh---ccccccccccc
Confidence            3567777777777766642   35667777776666665431    34566666666655544321   13455555555


Q ss_pred             CcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEccCCcccccccccccccccEEECcCCCCCCCChhhcc
Q 007962          217 NRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGK  296 (583)
Q Consensus       217 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  296 (583)
                      |.+..+|. ++.+++|+.++++++.+...+..   ...+.                      .+.+..+..... ..++.
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~----------------------~l~~~~~~~~~~-~~l~~  160 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLE----------------------FIAAGNNQLEEL-PELQN  160 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCC----------------------EEECCSSCCSSC-CCCTT
T ss_pred             cccccccc-hhhhccceeeccccccccccccc---ccccc----------------------chhhcccccccc-ccccc
Confidence            55555543 34455555555555544433221   12333                      333333222221 22445


Q ss_pred             cCCCcEEecCCCccccccccccCCCcHHHHHHHHhcCCCCCCcccccchhhhhhhhhccccccceeecCCCCCccCChhh
Q 007962          297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI  376 (583)
Q Consensus       297 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~  376 (583)
                      ++.++.+.++.+..........                                       ....+......+..++ ..
T Consensus       161 l~~l~~L~l~~n~~~~~~~~~~---------------------------------------~~~~l~~~~~~~~~~~-~~  200 (353)
T d1jl5a_         161 LPFLTAIYADNNSLKKLPDLPL---------------------------------------SLESIVAGNNILEELP-EL  200 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCT---------------------------------------TCCEEECCSSCCSSCC-CC
T ss_pred             cccceecccccccccccccccc---------------------------------------cccccccccccccccc-cc
Confidence            5666666666665432221110                                       1112222222222222 23


Q ss_pred             hccCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEE
Q 007962          377 WEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL  456 (583)
Q Consensus       377 ~~~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  456 (583)
                      ..++.++.++++++....++.   ...++..+.+.++.+.....    ....+....+..+.+..+...    .......
T Consensus       201 ~~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~l~~l----~~~~~~~  269 (353)
T d1jl5a_         201 QNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSEL----PPNLYYL  269 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESCC----CTTCCEE
T ss_pred             ccccccccccccccccccccc---cccccccccccccccccccc----ccccccccccccccccccccc----cchhccc
Confidence            345677777777776655543   23456667777766654332    234556666655554433211    1234455


Q ss_pred             eCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcC
Q 007962          457 DLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL  536 (583)
Q Consensus       457 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~  536 (583)
                      ++..+.+...    ...+++|++|++++|+++.+|.   .+++|++|++++|.++++|+.   +++|++|++++|+|+.+
T Consensus       270 ~~~~~~~~~~----~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~l  339 (353)
T d1jl5a_         270 NASSNEIRSL----CDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREF  339 (353)
T ss_dssp             ECCSSCCSEE----CCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC
T ss_pred             ccccCccccc----cccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCC
Confidence            5655554432    2346788888888888888775   357888888888888888753   46788888888888888


Q ss_pred             CCCccccccccceeecc
Q 007962          537 PPELGLLEPSLQALRLD  553 (583)
Q Consensus       537 ~~~~~~~~~~L~~L~l~  553 (583)
                      |..    +.+|+.|.+.
T Consensus       340 p~~----~~~L~~L~~~  352 (353)
T d1jl5a_         340 PDI----PESVEDLRMN  352 (353)
T ss_dssp             CCC----CTTCCEEECC
T ss_pred             Ccc----ccccCeeECc
Confidence            763    3567777664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.5e-18  Score=165.43  Aligned_cols=139  Identities=29%  Similarity=0.351  Sum_probs=81.6

Q ss_pred             cCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCC
Q 007962           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (583)
Q Consensus        45 ~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~  124 (583)
                      .++++|||+++.++.+|+.   .++|++|++++|+++.+|+.   ..+|+.|++++|.++.++..   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            3577777777777777642   45677777777777777654   34677777777766655421   134777777777


Q ss_pred             cCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCc
Q 007962          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (583)
Q Consensus       125 ~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~  198 (583)
                      .+..+|. +..+++|++|+++++.+...+..   ...+..+.+..+.......  +..++.++.+.+..+....
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~--l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS
T ss_pred             ccccccc-hhhhccceeeccccccccccccc---cccccchhhcccccccccc--ccccccceecccccccccc
Confidence            7766653 45666777777766666544322   2344455554443332211  4444555555555554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1e-18  Score=156.10  Aligned_cols=186  Identities=22%  Similarity=0.306  Sum_probs=100.7

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +.+|+.|++.+|+|++++ .+.++++|++|++++|.+..++ .+..+++|+++++++|.++.++ .+.++++|+.+.+++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            345666666666666653 4566666666666666665543 2555666666666665555442 344555555555555


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      +....+. .+...+.++.+.++.+.+                       .....  +..+++|++|+++++.+...+ .+
T Consensus       117 ~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l  169 (227)
T d1h6ua2         117 TQITDVT-PLAGLSNLQVLYLDLNQI-----------------------TNISP--LAGLTNLQYLSIGNAQVSDLT-PL  169 (227)
T ss_dssp             SCCCCCG-GGTTCTTCCEEECCSSCC-----------------------CCCGG--GGGCTTCCEEECCSSCCCCCG-GG
T ss_pred             ccccccc-hhccccchhhhhchhhhh-----------------------chhhh--hccccccccccccccccccch-hh
Confidence            5444331 233444444554444444                       33222  344445555555555444332 24


Q ss_pred             cCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhhhCCCCCCEEEcc
Q 007962          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH  261 (583)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~  261 (583)
                      +.+++|+.|++++|.+..++ .++.+++|++|++++|.++.++ .++++++|+.|+++
T Consensus       170 ~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         170 ANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             TTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEE
T ss_pred             cccccceecccCCCccCCCh-hhcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEee
Confidence            45556666666666555543 2555666666666666666554 35666777776664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.1e-19  Score=158.68  Aligned_cols=187  Identities=18%  Similarity=0.317  Sum_probs=131.8

Q ss_pred             CCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecC
Q 007962           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (583)
Q Consensus        90 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~  169 (583)
                      +.+|++|++.+|.++.+ +.+.++++|++|++++|.++.+. .+.+++++++++++++.++.++ .+.++++|+.+++++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~  116 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-ccccccccccccccc
Confidence            34444445554444444 23445555555555555554442 2555566666666666555553 456677777777777


Q ss_pred             CcceeechhhhcccccCcEEEcCCCcCCccchhhcCCccccEEEccCCcCcccCCCCcCCCCCcEEEcCCCCCccCchhh
Q 007962          170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL  249 (583)
Q Consensus       170 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l  249 (583)
                      +....+..  +...+.++.+.++++.+.... .+..+++|+.|++++|.+...+ .++.+++|++|++++|.+..++. +
T Consensus       117 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~Ls~n~l~~l~~-l  191 (227)
T d1h6ua2         117 TQITDVTP--LAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTTLKADDNKISDISP-L  191 (227)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             ccccccch--hccccchhhhhchhhhhchhh-hhccccccccccccccccccch-hhcccccceecccCCCccCCChh-h
Confidence            66655443  667788889999888876653 3667889999999999887653 48889999999999999998754 8


Q ss_pred             hCCCCCCEEEccCCcccccccccccccccEEECcC
Q 007962          250 GKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN  284 (583)
Q Consensus       250 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~  284 (583)
                      +.+++|++|++++|++++++......+|+.+++++
T Consensus       192 ~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         192 ASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred             cCCCCCCEEECcCCcCCCCcccccCCCCCEEEeeC
Confidence            89999999999999999887766666799998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.5e-20  Score=186.62  Aligned_cols=206  Identities=20%  Similarity=0.145  Sum_probs=139.4

Q ss_pred             ccceeecCCCCCcc-----CChhhhccCCccEEEcCCCCCCc------CCccccCCCCCcEEEccCCCCCCCCh----hh
Q 007962          358 TSKELSLEGMNLSA-----IPSEIWEAGEITKLDLSRNSIQE------LPPELSSCASLQTLILSRNKIKDWPD----AI  422 (583)
Q Consensus       358 ~l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~------l~~~l~~~~~L~~L~l~~~~l~~~~~----~~  422 (583)
                      ....+...++....     ....+...+.++.+++.++.+..      ..........++.+++++|.+.....    ..
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~  278 (460)
T d1z7xw1         199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  278 (460)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence            34445555554432     22234456788899998887643      22234556789999999998775322    23


Q ss_pred             hhcCCCCcEEecCCCCCccCCCCc-----cCCCCcccEEeCCCCccCCCCCCC----CCCCCccceEecccccccc----
Q 007962          423 LTSLSSLSCLKLDNNPLRQVPSDG-----FKDIPMLQILDLSYNIASLPENPP----FSSLPHLQELYLRRMQLRE----  489 (583)
Q Consensus       423 l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~l~~----  489 (583)
                      +...+.++.+++++|++++.....     ....+.|+.+++++|.++......    +...++|++|+|++|.++.    
T Consensus       279 l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~  358 (460)
T d1z7xw1         279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  358 (460)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             ccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccc
Confidence            456889999999999887422111     234568999999998876543322    3455789999999998873    


Q ss_pred             -cccchh-ccCcccEEeCCCCcCCc-----cchhhcCCCCCCEEeCCCCCCCc-----CCCCccccccccceeeccCCCC
Q 007962          490 -APTDIL-RLQQLRILDLSQNSLQS-----IPEGFKNLTSLTELDLSDNNISA-----LPPELGLLEPSLQALRLDGNPL  557 (583)
Q Consensus       490 -~~~~~~-~~~~L~~L~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~~L~~L~l~~~~~  557 (583)
                       +...+. ..+.|++|++++|.++.     +.+.+..+++|++|++++|+|+.     +...+......|+.|++.++.+
T Consensus       359 ~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             hhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence             333343 45779999999999973     45667888999999999999873     1112222224799999999998


Q ss_pred             ccchhH
Q 007962          558 RSIRRT  563 (583)
Q Consensus       558 ~~~~~~  563 (583)
                      .....+
T Consensus       439 ~~~~~~  444 (460)
T d1z7xw1         439 SEEMED  444 (460)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            754433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.5e-20  Score=186.67  Aligned_cols=156  Identities=22%  Similarity=0.193  Sum_probs=97.3

Q ss_pred             cCCccEEEcCCCCCCc-----CCccccCCCCCcEEEccCCCCCCCChhhh-----hcCCCCcEEecCCCCCccCCCC---
Q 007962          379 AGEITKLDLSRNSIQE-----LPPELSSCASLQTLILSRNKIKDWPDAIL-----TSLSSLSCLKLDNNPLRQVPSD---  445 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~-----l~~~l~~~~~L~~L~l~~~~l~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~---  445 (583)
                      ...++.+++++|.+..     ....+...+.++.+++++|.+++.....+     .....|+.+++++|.++.....   
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~  333 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  333 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcc
Confidence            3456677777666553     22234456677777777776654322211     2345677777777776653322   


Q ss_pred             -ccCCCCcccEEeCCCCccCCCCCCC----C-CCCCccceEecccccccc-----cccchhccCcccEEeCCCCcCCc--
Q 007962          446 -GFKDIPMLQILDLSYNIASLPENPP----F-SSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS--  512 (583)
Q Consensus       446 -~~~~~~~L~~L~l~~~~~~~~~~~~----~-~~l~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~n~l~~--  512 (583)
                       .+..+++|++|++++|.+++.+...    + ...+.|++|++++|.++.     +...+..+++|++|++++|.++.  
T Consensus       334 ~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         334 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             cccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence             2344567888888877765422111    1 245678888888888863     44556678899999999998872  


Q ss_pred             ---cchhhc-CCCCCCEEeCCCCCCC
Q 007962          513 ---IPEGFK-NLTSLTELDLSDNNIS  534 (583)
Q Consensus       513 ---l~~~l~-~~~~L~~L~l~~~~l~  534 (583)
                         +.+.+. +...|+.|++.++.+.
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCCC
Confidence               233343 4457999999998776

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=6.1e-18  Score=147.20  Aligned_cols=160  Identities=23%  Similarity=0.339  Sum_probs=101.2

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +.++++|+++++.|++++ .++++++|++|++++|.++.++. +.++++|++|++++|.+..++ .+.++++|+.|++++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccccccc
Confidence            456777777777777663 46677777777777777776643 667777777777777666554 366677777777776


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      +....+ ..+..+++|+.|++++|.+..++ .+..+++|++|++.+|.+..+.+  ++++++|++|++++|.++.++ .+
T Consensus       116 ~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i~-~l  190 (199)
T d2omxa2         116 NQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDIS-VL  190 (199)
T ss_dssp             SCCCCC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             cccccc-cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCCc-cc
Confidence            666554 24556666677776666665553 45666666666666666665543  555556666666666555543 34


Q ss_pred             cCCccccE
Q 007962          204 GSLSRLIR  211 (583)
Q Consensus       204 ~~~~~L~~  211 (583)
                      +.+++|+.
T Consensus       191 ~~L~~L~~  198 (199)
T d2omxa2         191 AKLTNLES  198 (199)
T ss_dssp             GGCTTCSE
T ss_pred             cCCCCCCc
Confidence            44455544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=7.2e-18  Score=148.02  Aligned_cols=164  Identities=23%  Similarity=0.345  Sum_probs=107.1

Q ss_pred             ccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        44 ~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      +.+++.|+++++.++.++ .++++++|++|++++|.++.++ .++.+++|++|++++|.++.++ .+..+++|+.|++++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccc
Confidence            456777777777777664 4667777777777777777664 3566777777777777776665 466677777777777


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEEecCCcceeechhhhcccccCcEEEcCCCcCCccchhh
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  203 (583)
                      |.+..++ .+..++++++++++++.+...+ .+..+++|+++++++|.+..+..  +..+++|++|++++|.++.++ .+
T Consensus       122 ~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~-~l  196 (210)
T d1h6ta2         122 NGISDIN-GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  196 (210)
T ss_dssp             SCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             ccccccc-cccccccccccccccccccccc-ccccccccccccccccccccccc--ccCCCCCCEEECCCCCCCCCh-hh
Confidence            7666553 5666677777777776666542 45566666666666666665543  556666666666666665554 35


Q ss_pred             cCCccccEEEcc
Q 007962          204 GSLSRLIRLDLH  215 (583)
Q Consensus       204 ~~~~~L~~L~l~  215 (583)
                      ..+++|++|+++
T Consensus       197 ~~l~~L~~L~Ls  208 (210)
T d1h6ta2         197 AGLKNLDVLELF  208 (210)
T ss_dssp             TTCTTCSEEEEE
T ss_pred             cCCCCCCEEEcc
Confidence            555666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.6e-17  Score=144.35  Aligned_cols=165  Identities=29%  Similarity=0.396  Sum_probs=139.6

Q ss_pred             cCCccEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962          379 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (583)
Q Consensus       379 ~~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  458 (583)
                      +.+|+++++++|.++.++ .+..+++|++|++++|+++++..  ++.+++|+.|++++|++++++  .+.++++|+.|++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l  119 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEEC
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc--ccccccccccccc
Confidence            457899999999988875 47789999999999999988764  578999999999999998876  3888999999999


Q ss_pred             CCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCCcCCC
Q 007962          459 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP  538 (583)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~~~~~  538 (583)
                      ++|.+....  .+..+++++.+++++|.++..+ .+..+++|+++++++|.+++++. +.++++|++|++++|+|+.+++
T Consensus       120 ~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~~l~~  195 (210)
T d1h6ta2         120 EHNGISDIN--GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA  195 (210)
T ss_dssp             TTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred             ccccccccc--cccccccccccccccccccccc-ccccccccccccccccccccccc-ccCCCCCCEEECCCCCCCCChh
Confidence            999876543  4788899999999999988764 56788999999999999998864 7889999999999999998864


Q ss_pred             CccccccccceeeccC
Q 007962          539 ELGLLEPSLQALRLDG  554 (583)
Q Consensus       539 ~~~~~~~~L~~L~l~~  554 (583)
                       +. .+++|+.|++++
T Consensus       196 -l~-~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 -LA-GLKNLDVLELFS  209 (210)
T ss_dssp             -GT-TCTTCSEEEEEE
T ss_pred             -hc-CCCCCCEEEccC
Confidence             33 348999999875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.3e-17  Score=139.90  Aligned_cols=162  Identities=23%  Similarity=0.376  Sum_probs=141.2

Q ss_pred             HHhhhceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchh
Q 007962            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (583)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~   86 (583)
                      ....+++++++++++++++. +             ..+++|++|++++|+++.++. ++++++|++|++++|.+..++ .
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~-l-------------~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~  101 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDG-V-------------EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-P  101 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTT-G-------------GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-G
T ss_pred             HhcCCCEEECCCCCCCCccc-c-------------ccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-c
Confidence            45788899999999988753 2             227899999999999998864 999999999999999998875 4


Q ss_pred             hhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccCCCCcccccCCCCcEEE
Q 007962           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (583)
Q Consensus        87 ~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~~L~  166 (583)
                      +.++++|+.|+++++....+ ..+.++++|+.|++++|.+..++ .+..+++|++|++.+|.+..++ .+.++++|++|+
T Consensus       102 l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~  178 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLD  178 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             cccccccccccccccccccc-cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEEE
Confidence            88999999999999987765 35888999999999999998774 6889999999999999999885 589999999999


Q ss_pred             ecCCcceeechhhhcccccCcEE
Q 007962          167 VEGNKLTVLSNNLIASWTMLTEL  189 (583)
Q Consensus       167 l~~~~i~~~~~~~~~~~~~L~~L  189 (583)
                      +++|++++++.  +.++++|+.|
T Consensus       179 ls~N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         179 ISSNKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             CCSSCCCCCGG--GGGCTTCSEE
T ss_pred             CCCCCCCCCcc--ccCCCCCCcC
Confidence            99999998764  7888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.7e-17  Score=149.98  Aligned_cols=211  Identities=15%  Similarity=0.213  Sum_probs=124.3

Q ss_pred             hceeeccCCcCCCCChhhhhcccccCCCCCcccccCccEEEcCCCcchhhhH-hhCCCCCCcEEEcCCCCCcc-cc-hhh
Q 007962           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LP-AAI   87 (583)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~~~i~~l~~-~~~~~~~L~~L~L~~~~l~~-l~-~~~   87 (583)
                      -++++|++.+++++|..++               +++++|++++|.|+.++. .|.++++|++|++++|.+.. ++ .+|
T Consensus        10 ~~~i~c~~~~l~~iP~~l~---------------~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f   74 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF   74 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC---------------SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSE
T ss_pred             CCEEEEeCCCCCCcCCCCC---------------CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccc
Confidence            4678999999999998774               368999999999998875 68899999999999988764 33 367


Q ss_pred             hCCCCccEEEccCC-ccccC-CccccccCcccEEEcCCCcCCcCCc--ccccCCCCCEEEccccccCCCCcccccCCCCc
Q 007962           88 GELHMLKSLDVSFN-SIMKI-PDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPEDLADCSKMS  163 (583)
Q Consensus        88 ~~~~~L~~L~L~~~-~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~l~~~l~~l~~L~  163 (583)
                      .++++++++.+..+ .+..+ +..+.++++|++++++++.+...+.  .+..+..+..+...++.+              
T Consensus        75 ~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l--------------  140 (242)
T d1xwdc1          75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI--------------  140 (242)
T ss_dssp             ESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTC--------------
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccc--------------
Confidence            88888888887653 55533 3446777777777777777665432  122233333333333333              


Q ss_pred             EEEecCCcceeechhhhcccc-cCcEEEcCCCcCCccchhhcCCccccEE-EccCCcCcccCC-CCcCCCCCcEEEcCCC
Q 007962          164 KLDVEGNKLTVLSNNLIASWT-MLTELIASKNLLNGMPETIGSLSRLIRL-DLHQNRILSIPS-SISGCCSLAEFYMGNN  240 (583)
Q Consensus       164 ~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~-~~~~~~~L~~L~l~~~  240 (583)
                               ..+....+.+++ .++.+++.++.++.++.......+++.+ .+.++.+..+|. .|.++++|+.|++++|
T Consensus       141 ---------~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N  211 (242)
T d1xwdc1         141 ---------HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  211 (242)
T ss_dssp             ---------CEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS
T ss_pred             ---------ccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC
Confidence                     333333333332 3444444444444443333333333333 234444554433 2455556666666655


Q ss_pred             CCccCch-hhhCCCCCCEEE
Q 007962          241 ALSALPA-ELGKLSKLGTLD  259 (583)
Q Consensus       241 ~~~~l~~-~l~~~~~L~~L~  259 (583)
                      +++.+|. .+.++++|+.++
T Consensus       212 ~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         212 RIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             CCCCCCSSSCTTCCEEESSS
T ss_pred             cCCccCHHHHcCCcccccCc
Confidence            5555543 244444444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.8e-16  Score=141.73  Aligned_cols=178  Identities=19%  Similarity=0.243  Sum_probs=124.0

Q ss_pred             ccCCccEEEcCCCCCCc-CC-ccccCCCCCcEEEccC-CCCCCCChhhhhcCCCCcEEecCCCCCccCCCCc-cCCCCcc
Q 007962          378 EAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG-FKDIPML  453 (583)
Q Consensus       378 ~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L  453 (583)
                      .+++|++|++++|.+.. ++ ..+..++.++++.+.. +.+.......|.++++|+.++++++.+...+... +..+..+
T Consensus        51 ~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l  130 (242)
T d1xwdc1          51 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV  130 (242)
T ss_dssp             TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCE
T ss_pred             ccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccc
Confidence            35566777777666554 32 2466677777777654 4566666666777788888888777776654322 3345566


Q ss_pred             cEEeCCCCccCCCCCCCCCCCC-ccceEecccccccccccchhccCcccEEe-CCCCcCCccchh-hcCCCCCCEEeCCC
Q 007962          454 QILDLSYNIASLPENPPFSSLP-HLQELYLRRMQLREAPTDILRLQQLRILD-LSQNSLQSIPEG-FKNLTSLTELDLSD  530 (583)
Q Consensus       454 ~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~-l~~n~l~~l~~~-l~~~~~L~~L~l~~  530 (583)
                      ..+...++.+.......+..++ .++.|++++++++.++...+..+++.++. +++|.++.+|.. |.++++|++|++++
T Consensus       131 ~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         131 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  210 (242)
T ss_dssp             EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT
T ss_pred             ccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCC
Confidence            6666666666666666666654 78888888888888877777777766664 566788888654 78889999999999


Q ss_pred             CCCCcCCCCccccccccceeeccCC
Q 007962          531 NNISALPPELGLLEPSLQALRLDGN  555 (583)
Q Consensus       531 ~~l~~~~~~~~~~~~~L~~L~l~~~  555 (583)
                      |+|+.+|+..+..++.|+.+++.+.
T Consensus       211 N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         211 TRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             SCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             CcCCccCHHHHcCCcccccCcCCCC
Confidence            9999888877666677777766543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=2.8e-16  Score=135.63  Aligned_cols=170  Identities=21%  Similarity=0.268  Sum_probs=92.0

Q ss_pred             cEEEcCCCCCCcCCccccCCCCCcEEEccCCCCCC-CChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeCCCC
Q 007962          383 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN  461 (583)
Q Consensus       383 ~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  461 (583)
                      ++++.+++.++.+|+.+.  +++++|++++|.++. .....|..+++|+.|++++|.+..+....|..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            445555555555555432  456666666666653 34445566666666666666666665555666666666666666


Q ss_pred             ccCCCCCCCCCCCCccceEecccccccccccc-hhccCcccEEeCCCCcCCccchhhcCCCCCCEEeCCCCCCC-cCCCC
Q 007962          462 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS-ALPPE  539 (583)
Q Consensus       462 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~n~l~~l~~~l~~~~~L~~L~l~~~~l~-~~~~~  539 (583)
                      ++..+.+.+|.++++|++|+|++|.|+.++.. +..+++|++|++++|.+........-...++.+.+..+.++ ..|..
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChh
Confidence            66666555666666666666666666655443 34566666666666655522111000112334445555444 33332


Q ss_pred             ccccccccceeeccCCCCc
Q 007962          540 LGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       540 ~~~~~~~L~~L~l~~~~~~  558 (583)
                      +    ..++.++++.+.+.
T Consensus       169 l----~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         169 V----RDVQIKDLPHSEFK  183 (192)
T ss_dssp             T----TTSBGGGSCTTTCC
T ss_pred             h----cCCEeeecCHhhCc
Confidence            1    33445555555553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=5.2e-16  Score=133.89  Aligned_cols=172  Identities=20%  Similarity=0.231  Sum_probs=143.7

Q ss_pred             ccceeecCCCCCccCChhhhccCCccEEEcCCCCCCc-CC-ccccCCCCCcEEEccCCCCCCCChhhhhcCCCCcEEecC
Q 007962          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD  435 (583)
Q Consensus       358 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-l~-~~l~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~  435 (583)
                      ..++++.+++++..+|..+  .+.+++|++++|.++. ++ ..+..+++|+.|++++|.+.......|..+++|++|+++
T Consensus         9 ~~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3567889999999999876  3689999999999976 43 467899999999999999999999999999999999999


Q ss_pred             CCCCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccccccccccchhccCcccEEeCCCCcCC-ccc
Q 007962          436 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ-SIP  514 (583)
Q Consensus       436 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~n~l~-~l~  514 (583)
                      +|++..++..+|.++++|++|++++|.++.+.+.+|..+++|++|+|++|.+.......+-...++.+.+..+.++ ..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            9999999999999999999999999999999999999999999999999988754333332344666677777776 445


Q ss_pred             hhhcCCCCCCEEeCCCCCCC
Q 007962          515 EGFKNLTSLTELDLSDNNIS  534 (583)
Q Consensus       515 ~~l~~~~~L~~L~l~~~~l~  534 (583)
                      ..   +..++.++++.++++
T Consensus       167 ~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         167 SK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             TT---TTTSBGGGSCTTTCC
T ss_pred             hh---hcCCEeeecCHhhCc
Confidence            43   456667778877765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.5e-16  Score=129.33  Aligned_cols=126  Identities=22%  Similarity=0.217  Sum_probs=89.4

Q ss_pred             CcccccCccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCcc-ccccCcccE
Q 007962           40 KWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVK  118 (583)
Q Consensus        40 ~~~~~~~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~  118 (583)
                      .|.++.++++|+|++|+|+.++..+..+++|++|++++|.++.+ +.+..+++|++|++++|.++.++.. +..+++|++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            34556778888888888887776667778888888888887777 3477778888888888877776654 345777777


Q ss_pred             EEcCCCcCCcCC--cccccCCCCCEEEccccccCCCCc----ccccCCCCcEEE
Q 007962          119 FDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLD  166 (583)
Q Consensus       119 L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~l~~----~l~~l~~L~~L~  166 (583)
                      |++++|++..++  ..+..+++|++|++++|.+...+.    .+..+++|++||
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777777654  256667777777777777665542    355666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4e-15  Score=117.18  Aligned_cols=99  Identities=29%  Similarity=0.429  Sum_probs=41.6

Q ss_pred             EEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCc
Q 007962           49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE  128 (583)
Q Consensus        49 ~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~  128 (583)
                      +|++++|+++.++ .++++++|++|++++|.++++|+.++.+++|++|++++|.++.++ .+..+++|++|++++|++..
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCC
Confidence            3444444444443 234444444444444444444444444444444444444444332 23444444444444444443


Q ss_pred             CC--cccccCCCCCEEEcccccc
Q 007962          129 LP--SSLGRCLNLSDFKASNNCI  149 (583)
Q Consensus       129 ~~--~~~~~~~~L~~L~l~~~~~  149 (583)
                      ++  ..+..+++|++|++++|.+
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCchhhcCCCCCCEEECCCCcC
Confidence            32  1233444444444444433

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.8e-15  Score=136.97  Aligned_cols=172  Identities=16%  Similarity=0.218  Sum_probs=86.8

Q ss_pred             CccEEEcCCCcchhhhHhhCCCCCCcEEEcCCCCCc--ccchhhhCCCCccEEEccCCccc-cCCccccccCcccEEEcC
Q 007962           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCS  122 (583)
Q Consensus        46 ~L~~L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~--~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~l~  122 (583)
                      .+..+.++...+...........+|++||++++.++  .+...+.++++|++|++++|.++ ..+..+.++++|++|+++
T Consensus        24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            345566665544433233344567777777777665  24445677777777777777665 344456667777777777


Q ss_pred             CCc-CCc--CCcccccCCCCCEEEccccc-cC--CCCccccc-CCCCcEEEecCCc--ceeech-hhhcccccCcEEEcC
Q 007962          123 SNQ-LKE--LPSSLGRCLNLSDFKASNNC-IT--SLPEDLAD-CSKMSKLDVEGNK--LTVLSN-NLIASWTMLTELIAS  192 (583)
Q Consensus       123 ~~~-~~~--~~~~~~~~~~L~~L~l~~~~-~~--~l~~~l~~-l~~L~~L~l~~~~--i~~~~~-~~~~~~~~L~~L~l~  192 (583)
                      +|. ++.  +......+++|++|++++|. +.  .+...+.. +++|+.|+++++.  +.+... ..+..+++|++|+++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~  183 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS  183 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccc
Confidence            653 331  22223456666666666652 22  11112222 3556666665542  221111 112334555555555


Q ss_pred             CCc-CC-ccchhhcCCccccEEEccCC
Q 007962          193 KNL-LN-GMPETIGSLSRLIRLDLHQN  217 (583)
Q Consensus       193 ~~~-~~-~~~~~l~~~~~L~~L~l~~~  217 (583)
                      +|. ++ .....+..+++|++|++++|
T Consensus       184 ~~~~itd~~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         184 DSVMLKNDCFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             TCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             cccCCCchhhhhhcccCcCCEEECCCC
Confidence            442 22 12233344444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.1e-15  Score=138.68  Aligned_cols=175  Identities=16%  Similarity=0.174  Sum_probs=90.7

Q ss_pred             cccCccEEEcCCCcch--hhhHhhCCCCCCcEEEcCCCCCc-ccchhhhCCCCccEEEccCC-ccc--cCCccccccCcc
Q 007962           43 EAVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIM--KIPDEIGSATAL  116 (583)
Q Consensus        43 ~~~~L~~L~ls~~~i~--~l~~~~~~~~~L~~L~L~~~~l~-~l~~~~~~~~~L~~L~L~~~-~l~--~l~~~~~~l~~L  116 (583)
                      ...+|++||++++.++  .+...+.++++|++|++++|.++ ..+..+..+++|++|++++| .++  .+...+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            3456666666666654  24445666666666666666655 22345556666666666665 343  122223456666


Q ss_pred             cEEEcCCCc-CC--cCCcccc-cCCCCCEEEccccc--cC--CCCcccccCCCCcEEEecCCc-ceeechhhhcccccCc
Q 007962          117 VKFDCSSNQ-LK--ELPSSLG-RCLNLSDFKASNNC--IT--SLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLT  187 (583)
Q Consensus       117 ~~L~l~~~~-~~--~~~~~~~-~~~~L~~L~l~~~~--~~--~l~~~l~~l~~L~~L~l~~~~-i~~~~~~~~~~~~~L~  187 (583)
                      ++|++++|. ++  .+...+. .++.|+.|+++++.  +.  .+......+++|++|++++|. +++.....+.++++|+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~  203 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ  203 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence            666666653 22  1111222 24566666666542  22  222334456666666666643 4444444455666666


Q ss_pred             EEEcCCCc-CC-ccchhhcCCccccEEEccCC
Q 007962          188 ELIASKNL-LN-GMPETIGSLSRLIRLDLHQN  217 (583)
Q Consensus       188 ~L~l~~~~-~~-~~~~~l~~~~~L~~L~l~~~  217 (583)
                      +|++++|. ++ .....++.+++|+.|+++++
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66666642 22 11123344445555555443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.1e-14  Score=114.56  Aligned_cols=116  Identities=22%  Similarity=0.391  Sum_probs=85.8

Q ss_pred             cEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEccccccC
Q 007962           71 TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT  150 (583)
Q Consensus        71 ~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  150 (583)
                      |+|+|++|+++.++ .+..+++|++|++++|.++.+|..+..+++|++|++++|.++.++ .+..+++|++|++++|.+.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            57888888888775 477888888888888888888877888888888888888888775 5778888888888888887


Q ss_pred             CCC--cccccCCCCcEEEecCCcceeec---hhhhcccccCcE
Q 007962          151 SLP--EDLADCSKMSKLDVEGNKLTVLS---NNLIASWTMLTE  188 (583)
Q Consensus       151 ~l~--~~l~~l~~L~~L~l~~~~i~~~~---~~~~~~~~~L~~  188 (583)
                      .++  ..+..+++|++|++++|.+...+   ......+|+++.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~  121 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  121 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcce
Confidence            665  35677778888888877765432   333333444444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.5e-15  Score=122.19  Aligned_cols=127  Identities=17%  Similarity=0.146  Sum_probs=101.2

Q ss_pred             hhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcc-cccCCCCCE
Q 007962           63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSD  141 (583)
Q Consensus        63 ~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~  141 (583)
                      .|.++.++++|+|++|.++.++..+..+++|++|++++|.++.++ .+..+++|++|++++|+++.++.. +..+++|++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            467888999999999999999877788999999999999988874 588899999999999999888754 467888999


Q ss_pred             EEccccccCCCCc--ccccCCCCcEEEecCCcceeech---hhhcccccCcEEE
Q 007962          142 FKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELI  190 (583)
Q Consensus       142 L~l~~~~~~~l~~--~l~~l~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~  190 (583)
                      |++++|.+..++.  .+..+++|++|++++|.+...+.   ..+..+++|+.|+
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            9999888887653  57778888888888887765542   2355566666655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=4.5e-15  Score=141.25  Aligned_cols=225  Identities=17%  Similarity=0.170  Sum_probs=131.2

Q ss_pred             ccccCccEEEcCCCcch-----hhhHhhCCCCCCcEEEcCCCCCcc-----------cchhhhCCCCccEEEccCCcccc
Q 007962           42 WEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----------LPAAIGELHMLKSLDVSFNSIMK  105 (583)
Q Consensus        42 ~~~~~L~~L~ls~~~i~-----~l~~~~~~~~~L~~L~L~~~~l~~-----------l~~~~~~~~~L~~L~L~~~~l~~  105 (583)
                      .+...++.|+|++|.|.     .+...+..+++|+.++++++....           +..++..+++|++|++++|.++.
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            33567888888888775     344567778888888888765432           22345667888888888887652


Q ss_pred             -----CCccccccCcccEEEcCCCcCCc-----CCc---------ccccCCCCCEEEccccccC-----CCCcccccCCC
Q 007962          106 -----IPDEIGSATALVKFDCSSNQLKE-----LPS---------SLGRCLNLSDFKASNNCIT-----SLPEDLADCSK  161 (583)
Q Consensus       106 -----l~~~~~~l~~L~~L~l~~~~~~~-----~~~---------~~~~~~~L~~L~l~~~~~~-----~l~~~l~~l~~  161 (583)
                           +...+...++|++|++++|.+..     +..         .....+.|+.+.++++.+.     .+...+..+++
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence                 33345567788888888776641     101         1234567777777777654     23334556677


Q ss_pred             CcEEEecCCcceee-----chhhhcccccCcEEEcCCCcCCc-----cchhhcCCccccEEEccCCcCcc-----cCCCC
Q 007962          162 MSKLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSI  226 (583)
Q Consensus       162 L~~L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~-----~~~~~  226 (583)
                      |++|++++|.+...     ....+..+++|+.|++++|.+..     +...+..+++|++|++++|.+..     +...+
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l  267 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  267 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHh
Confidence            77777777766532     11224455666777776666532     23345556666666666666541     11122


Q ss_pred             c--CCCCCcEEEcCCCCCcc-----Cchhhh-CCCCCCEEEccCCccc
Q 007962          227 S--GCCSLAEFYMGNNALSA-----LPAELG-KLSKLGTLDLHSNQLK  266 (583)
Q Consensus       227 ~--~~~~L~~L~l~~~~~~~-----l~~~l~-~~~~L~~L~l~~~~l~  266 (583)
                      .  ..+.|++|++++|.+..     +...+. +.++|++|++++|.+.
T Consensus       268 ~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         268 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            2  22446666666665541     222232 3455666666555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=5.6e-15  Score=140.62  Aligned_cols=240  Identities=21%  Similarity=0.200  Sum_probs=128.4

Q ss_pred             chhhhHhhCCCCCCcEEEcCCCCCc-----ccchhhhCCCCccEEEccCCccccC-----------CccccccCcccEEE
Q 007962           57 IEKLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMKI-----------PDEIGSATALVKFD  120 (583)
Q Consensus        57 i~~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~~~~L~~L~L~~~~l~~l-----------~~~~~~l~~L~~L~  120 (583)
                      +..+...+.++..|++|+|++|.+.     .+...+...++|+.++++++.....           ...+..+++|+.|+
T Consensus        20 ~~~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~   99 (344)
T d2ca6a1          20 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR   99 (344)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccc
Confidence            3345556788888999999988776     2344667788888888887654322           12234456666666


Q ss_pred             cCCCcCCc-----CCcccccCCCCCEEEccccccCC-----CCcccccCCCCcEEEecCCcceeechhhhcccccCcEEE
Q 007962          121 CSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI  190 (583)
Q Consensus       121 l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  190 (583)
                      +++|.+..     +...+..+++|++|++++|.+..     +...+..+               .........+.|+.+.
T Consensus       100 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~---------------~~~~~~~~~~~L~~l~  164 (344)
T d2ca6a1         100 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL---------------AVNKKAKNAPPLRSII  164 (344)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH---------------HHHHHHHTCCCCCEEE
T ss_pred             ccccccccccccchhhhhcccccchheeccccccccccccccccccccc---------------ccccccccCcccceee
Confidence            66665542     22233445556666665554431     00000000               0000011233455555


Q ss_pred             cCCCcCCc-----cchhhcCCccccEEEccCCcCcc------cCCCCcCCCCCcEEEcCCCCCc-----cCchhhhCCCC
Q 007962          191 ASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS------IPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSK  254 (583)
Q Consensus       191 l~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~~~~~-----~l~~~l~~~~~  254 (583)
                      ++++.+..     +...+..++.|+.+++++|.+..      +...+..+++|+.|++++|.+.     .+...+..+++
T Consensus       165 l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         165 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             cccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccccc
Confidence            55544421     22233444556666666555441      2233455666666666666554     12344556666


Q ss_pred             CCEEEccCCcccccccccc--------cccccEEECcCCCCCC-----CChhh-cccCCCcEEecCCCccc
Q 007962          255 LGTLDLHSNQLKEYCVEAC--------QLRLSVLDLSNNSLSG-----LPPEI-GKMTTLRKLLLTGNPLR  311 (583)
Q Consensus       255 L~~L~l~~~~l~~~~~~~~--------~~~L~~L~l~~~~~~~-----~~~~~-~~~~~L~~L~l~~~~~~  311 (583)
                      |++|++++|.+.+......        ...+++|++++|.+..     +...+ .++++|+++++++|.+.
T Consensus       245 L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         245 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             chhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            6666666666653221111        1236677777766554     22334 35778999999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=3.3e-15  Score=128.72  Aligned_cols=127  Identities=29%  Similarity=0.330  Sum_probs=87.3

Q ss_pred             CccEEEcCCC--cchhhhHhhCCCCCCcEEEcCCCCCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCC
Q 007962           46 DLQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (583)
Q Consensus        46 ~L~~L~ls~~--~i~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~  123 (583)
                      ..+.+++++.  .++.++..+..+++|++|+|++|.++.++ .+..+++|++|++++|.++.++.....+++|+.|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            4555666554  45566667777777888888877777764 47777777777777777777765555566777777777


Q ss_pred             CcCCcCCcccccCCCCCEEEccccccCCCC--cccccCCCCcEEEecCCccee
Q 007962          124 NQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTV  174 (583)
Q Consensus       124 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~--~~l~~l~~L~~L~l~~~~i~~  174 (583)
                      |.++.+ +.+..+++|++|++++|.+..++  ..+..+++|++|++++|.+..
T Consensus       103 N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         103 NQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             EECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             cccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            777765 34666777777777777776654  346667777777777776553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.37  E-value=1.7e-14  Score=124.09  Aligned_cols=129  Identities=21%  Similarity=0.239  Sum_probs=94.9

Q ss_pred             CCCCcEEEcCCC--CCcccchhhhCCCCccEEEccCCccccCCccccccCcccEEEcCCCcCCcCCcccccCCCCCEEEc
Q 007962           67 LPLLTVLNVSHN--KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA  144 (583)
Q Consensus        67 ~~~L~~L~L~~~--~l~~l~~~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l  144 (583)
                      ....+.+++++.  .+..++.+++.+++|++|++++|.++.++ .+.++++|++|++++|.++.++.....+++|++|++
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l  100 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI  100 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEEC
T ss_pred             ccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccc
Confidence            445666777654  45667778888888888888888888775 578888888888888888887766666677888888


Q ss_pred             cccccCCCCcccccCCCCcEEEecCCcceeech-hhhcccccCcEEEcCCCcCC
Q 007962          145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLN  197 (583)
Q Consensus       145 ~~~~~~~l~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l~~~~~~  197 (583)
                      ++|.+..+ ..+..+++|++|++++|.+..+.. ..+..+++|+.|++++|.+.
T Consensus       101 ~~N~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         101 SYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            88877766 346677777777777777776543 34666777777777777653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=6.5e-11  Score=96.91  Aligned_cols=104  Identities=21%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             EEEccCCCCCCCChhhhhcCCCCcEEecCCC-CCccCCCCccCCCCcccEEeCCCCccCCCCCCCCCCCCccceEecccc
Q 007962          407 TLILSRNKIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM  485 (583)
Q Consensus       407 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  485 (583)
                      .++..++.+.+.+.. +..+++|++|++.++ .++.++..+|.++++|+.|++++|.++.+.+.+|..+++|++|+|++|
T Consensus        12 ~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            344444444333222 234445555555433 244454444555555555555555555544445555555555555555


Q ss_pred             cccccccchhccCcccEEeCCCCcCC
Q 007962          486 QLREAPTDILRLQQLRILDLSQNSLQ  511 (583)
Q Consensus       486 ~l~~~~~~~~~~~~L~~L~l~~n~l~  511 (583)
                      +++.++........|+.|++++|.+.
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCcccChhhhccccccccccCCCccc
Confidence            55555555444445556666655543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.2e-10  Score=95.19  Aligned_cols=108  Identities=25%  Similarity=0.280  Sum_probs=89.5

Q ss_pred             CCccEEEcCCCCCCcCCccccCCCCCcEEEccCC-CCCCCChhhhhcCCCCcEEecCCCCCccCCCCccCCCCcccEEeC
Q 007962          380 GEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL  458 (583)
Q Consensus       380 ~~L~~L~l~~~~l~~l~~~l~~~~~L~~L~l~~~-~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  458 (583)
                      ...+.++.++..+.+.|..+..+++|++|++.++ .++.+....|.++++|+.|++++|+++.++..+|.++++|++|++
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            3456677888888788877888889999999766 588888888888999999999999999988888999999999999


Q ss_pred             CCCccCCCCCCCCCCCCccceEeccccccc
Q 007962          459 SYNIASLPENPPFSSLPHLQELYLRRMQLR  488 (583)
Q Consensus       459 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  488 (583)
                      ++|+++.+....+... +|++|+|++|.+.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            9999988777767654 6999999988765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=5e-08  Score=79.98  Aligned_cols=64  Identities=28%  Similarity=0.321  Sum_probs=31.7

Q ss_pred             hccCcccEEeCCCCcCCcc---chhhcCCCCCCEEeCCCCCCCcCCCCccccccccceeeccCCCCc
Q 007962          495 LRLQQLRILDLSQNSLQSI---PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR  558 (583)
Q Consensus       495 ~~~~~L~~L~l~~n~l~~l---~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~~~~~  558 (583)
                      ..+++|++|++++|.++.+   +..++.+++|+.|++++|+|+.+++..+....+|+.++++||++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3455555555555555533   223445555555555555555544422111234555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.8e-08  Score=80.06  Aligned_cols=94  Identities=22%  Similarity=0.173  Sum_probs=58.5

Q ss_pred             EEcCCCcchhhhHhhCCCCCCcEEEcCCCCCcccc---hhhhCCCCccEEEccCCccccCCc-cccccCcccEEEcCCCc
Q 007962           50 LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQ  125 (583)
Q Consensus        50 L~ls~~~i~~l~~~~~~~~~L~~L~L~~~~l~~l~---~~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~l~~~~  125 (583)
                      ++...+..+.++..+.++++|++|+|++|+++.++   ..+..+++|++|++++|.++.+++ ...+..+|+.|++++|+
T Consensus        47 l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          47 LNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             TTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             cchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            33334444445555667788888888888877653   346677888888888887776654 22234467777777777


Q ss_pred             CCcCCc--------ccccCCCCCEEE
Q 007962          126 LKELPS--------SLGRCLNLSDFK  143 (583)
Q Consensus       126 ~~~~~~--------~~~~~~~L~~L~  143 (583)
                      +.....        .+..+|+|+.||
T Consensus       127 l~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         127 LSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcCcccchhHHHHHHHHCCCCCEEC
Confidence            654321        244566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.26  E-value=6.2e-07  Score=73.65  Aligned_cols=60  Identities=20%  Similarity=0.243  Sum_probs=30.8

Q ss_pred             cCccEEEcCCC-cch-----hhhHhhCCCCCCcEEEcCCCCCc-----ccchhhhCCCCccEEEccCCccc
Q 007962           45 VDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM  104 (583)
Q Consensus        45 ~~L~~L~ls~~-~i~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~~~~L~~L~L~~~~l~  104 (583)
                      ++|++|+|+++ .++     .+-..+...++|++|+|++|.+.     .+...+...+.|++|++++|.++
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45666666543 343     12234555566666666666554     12234444555555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.20  E-value=6.5e-07  Score=73.52  Aligned_cols=109  Identities=16%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             HhhCCCCCCcEEEcCCC-CCc-----ccchhhhCCCCccEEEccCCccc-----cCCccccccCcccEEEcCCCcCC---
Q 007962           62 EDLRNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK---  127 (583)
Q Consensus        62 ~~~~~~~~L~~L~L~~~-~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~l~~~~~~---  127 (583)
                      ....+.++|++|+|+++ .++     .+..++...+.|++|++++|.++     .+...+...+.|++|++++|.++   
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g   88 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL   88 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHH
Confidence            34567789999999875 455     23346777888888888888776     23334555677777777777765   


Q ss_pred             --cCCcccccCCCCCEEEccccccCC--------CCcccccCCCCcEEEecCC
Q 007962          128 --ELPSSLGRCLNLSDFKASNNCITS--------LPEDLADCSKMSKLDVEGN  170 (583)
Q Consensus       128 --~~~~~~~~~~~L~~L~l~~~~~~~--------l~~~l~~l~~L~~L~l~~~  170 (583)
                        .+...+...++|++|+++++....        +...+...++|+.|+++.+
T Consensus        89 ~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          89 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence              222345556666666666554332        2233444555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.99  E-value=4e-06  Score=68.72  Aligned_cols=61  Identities=13%  Similarity=0.182  Sum_probs=29.0

Q ss_pred             cccCcccEEEcCCCcCC-----cCCcccccCCCCCEEEcc--ccccC-----CCCcccccCCCCcEEEecCCc
Q 007962          111 GSATALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKAS--NNCIT-----SLPEDLADCSKMSKLDVEGNK  171 (583)
Q Consensus       111 ~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~--~~~~~-----~l~~~l~~l~~L~~L~l~~~~  171 (583)
                      ...++++.++++++.+.     .+...+...++|+.++++  ++.+.     .+...+...++|++|+++.+.
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            33444444444444433     222344455555554443  23332     234445566667777665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.95  E-value=3.7e-06  Score=68.92  Aligned_cols=104  Identities=23%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             ccCccEEEcCC-Ccch-----hhhHhhCCCCCCcEEEcCCCCCc-----ccchhhhCCCCccEEEccCCccc-----cCC
Q 007962           44 AVDLQKLILAH-NNIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (583)
Q Consensus        44 ~~~L~~L~ls~-~~i~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~~~~~~~~~L~~L~L~~~~l~-----~l~  107 (583)
                      .++|++|++++ +.++     .+...+..+++|++|++++|.++     .+...+...+.++.+++++|.++     .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            35666666665 3343     22334556666666666666655     22334555666666666666554     233


Q ss_pred             ccccccCcccEEEcC--CCcCC-----cCCcccccCCCCCEEEcccc
Q 007962          108 DEIGSATALVKFDCS--SNQLK-----ELPSSLGRCLNLSDFKASNN  147 (583)
Q Consensus       108 ~~~~~l~~L~~L~l~--~~~~~-----~~~~~~~~~~~L~~L~l~~~  147 (583)
                      ..+...++|+.+.++  ++.+.     .+...+..++.|++|+++.+
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            445555666654443  33343     23334556666666666544