Citrus Sinensis ID: 007966

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
MGFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMVFIPNFELFMINLV
cccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccEEEcccEEEccHHcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccccccccccccHHHHHHHHHHHEEEEccHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccccccccHHHHHHHHcc
ccEEEEccccccccccHHHHHHHHHHHHccccccHHHccccccccHHHHHccHHHHHHHcHHHHHcccEEEHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHcHHHHHHHHcccccccccccccccccccccHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHc
mgflvdsqrdgggdggygmfGCCVRtlvrrkqvdsvhtkpershqklaknltiphlvAIGVGSTIGAGVYILVGTvarehsgpaLALSFLIAGIASAFSAFCYAELasrcpsagsayhYSYICVGEGVAWLIGWALILEYTIGgsavargispnlamlfgsadslpffmarqqipglgiivDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSylgfktgwsgyelptgyfpfgvngmlagSATVFFAFIGFDAVASTAEevknpqrdlplgigTALSICCALYMLVSIVIVGlvpyyemdpdtpissafashgmhWASYVITIGAVTALCSTLmgsilpqprILMAMArdgllppffsdvnkttqvpvksTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILryvppdevpvpstlqssidsVSLQfsqsslsisgkslvddvgtlretepllakkggavsyplIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYaasdlslprLLQLTLCGIGGALLLCGLIVLTsinqdearhnfghaggmvfipNFELFMINLV
mgflvdsqrdgggdggyGMFGCCVRTLVRRKQvdsvhtkpershqklaknltiPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPllakkggavsyplIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMVFIPNFELFMINLV
MGFLVDSQRDgggdggygmfgCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLqssidsvslqfsqsslsisgkslVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQltlcgiggalllcglivltSINQDEARHNFGHAGGMVFIPNFELFMINLV
**************GGYGMFGCCVRTLVRRKQV*************LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD*********************************DVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMVFIPNFELFMIN**
***************GYGMFGCCVRTLVRRK*******************LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP*************DSVS************************TEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMVFIPNFELFMINLV
MGFLVDSQRDGGGDGGYGMFGCCVRTLVRR**************QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMVFIPNFELFMINLV
*GFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVDSVHT****SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSI******************LAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMVFIPNFELFMINLV
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
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MGFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMVFIPNFELFMINLV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query583 2.2.26 [Sep-21-2011]
Q9ASS7635 Cationic amino acid trans yes no 0.957 0.878 0.719 0.0
Q8GYB4609 Cationic amino acid trans no no 0.912 0.873 0.707 0.0
Q8W4K3600 Cationic amino acid trans no no 0.921 0.895 0.614 0.0
Q6DCE8622 Low affinity cationic ami N/A no 0.715 0.670 0.421 1e-86
Q09143622 High affinity cationic am yes no 0.713 0.668 0.415 4e-85
B5D5N9657 Low affinity cationic ami yes no 0.730 0.648 0.419 6e-85
B3TP03654 Low affinity cationic ami no no 0.725 0.646 0.420 7e-85
P18581657 Low affinity cationic ami no no 0.730 0.648 0.417 2e-84
P30823624 High affinity cationic am no no 0.713 0.666 0.407 1e-83
A8I499657 Low affinity cationic ami no no 0.725 0.643 0.420 4e-83
>sp|Q9ASS7|CAAT2_ARATH Cationic amino acid transporter 2, vacuolar OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  827 bits (2135), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/581 (71%), Positives = 480/581 (82%), Gaps = 23/581 (3%)

Query: 1   MGFLVDSQRDGGGDG-GYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAI 59
           MGFLVD+Q++GGG   GY      VR+LVRRKQVDS + +    HQ LA+ LT+PHLVAI
Sbjct: 1   MGFLVDTQKEGGGHSWGY------VRSLVRRKQVDSANGQ-SHGHQ-LARALTVPHLVAI 52

Query: 60  GVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHY 119
           GVG+TIGAGVYILVGTVAREHSGP+LALSFLIAGIA+  SAFCYAEL+SRCPSAGSAYHY
Sbjct: 53  GVGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSAFCYAELSSRCPSAGSAYHY 112

Query: 120 SYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGI 179
           SYICVGEGVAW+IGWALILEYTIGGSAVARGISPNLA++FG  D LP  +AR QIPGL I
Sbjct: 113 SYICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFGGEDGLPAILARHQIPGLDI 172

Query: 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL 239
           +VDPCAAILV +VTGLLC+GIKEST AQ IVT  NV  +LFVI+AGSYLGFKTGW GYEL
Sbjct: 173 VVDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVCVLLFVIVAGSYLGFKTGWPGYEL 232

Query: 240 PTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYML 299
           PTG+FPFGV+GM AGSATVFFAFIGFD+VASTAEEV+NPQRDLP+GIG AL +CC+LYM+
Sbjct: 233 PTGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVRNPQRDLPIGIGLALLLCCSLYMM 292

Query: 300 VSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359
           VSIVIVGL+PYY MDPDTPISSAFASH M WA Y+IT+GAV ALCS LMG++LPQPRILM
Sbjct: 293 VSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLITLGAVMALCSALMGALLPQPRILM 352

Query: 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMV 419
           AMARDGLLP  FSD+NK TQVPVK+T+ TG+ AA LAFFMDVS LAGMVSVGTLLAFTMV
Sbjct: 353 AMARDGLLPSIFSDINKRTQVPVKATVATGLCAATLAFFMDVSQLAGMVSVGTLLAFTMV 412

Query: 420 AISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRET-EPLLA 478
           AISVLILRYVPPDE P+PS+LQ  IDSVS    +++ S         VGT   + +PL+ 
Sbjct: 413 AISVLILRYVPPDEQPLPSSLQERIDSVSFICGETTSS-------GHVGTSDSSHQPLIV 465

Query: 479 KKGGAVSYPLIKQVQD----ILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQL 534
                V  PLIK  +     +L+EE RR VAGW+IMFTC+G F+L+YAAS LS P L++ 
Sbjct: 466 NNDALVDVPLIKNQEALGCLVLSEETRRIVAGWSIMFTCVGAFLLSYAASSLSFPGLIRY 525

Query: 535 TLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGMV--FIP 573
            LCG+GG LLL GLI L+SI+QD+ARH FGH+GG +  F+P
Sbjct: 526 PLCGVGGCLLLAGLIALSSIDQDDARHTFGHSGGYMCPFVP 566
Permease involved in the transport of the cationic amino acids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GYB4|CAAT3_ARATH Cationic amino acid transporter 3, mitochondrial OS=Arabidopsis thaliana GN=CAT3 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4K3|CAAT4_ARATH Cationic amino acid transporter 4, vacuolar OS=Arabidopsis thaliana GN=CAT4 PE=1 SV=1 Back     alignment and function description
>sp|Q6DCE8|CTR2_XENLA Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|B5D5N9|CTR2_RAT Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1 Back     alignment and function description
>sp|B3TP03|CTR2_CHICK Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1 Back     alignment and function description
>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3 Back     alignment and function description
>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1 Back     alignment and function description
>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
255569446643 cationic amino acid transporter, putativ 0.969 0.878 0.759 0.0
224123888640 cationic amino acid transporter [Populus 0.984 0.896 0.733 0.0
224144852641 cationic amino acid transporter [Populus 0.970 0.882 0.753 0.0
30696198635 cationic amino acid transporter 2 [Arabi 0.957 0.878 0.719 0.0
297840681635 hypothetical protein ARALYDRAFT_475412 [ 0.957 0.878 0.712 0.0
23306414635 Unknown protein [Arabidopsis thaliana] 0.957 0.878 0.717 0.0
225439247639 PREDICTED: high affinity cationic amino 0.938 0.856 0.751 0.0
296085920619 unnamed protein product [Vitis vinifera] 0.933 0.878 0.753 0.0
449462747655 PREDICTED: cationic amino acid transport 0.979 0.871 0.691 0.0
296085919646 unnamed protein product [Vitis vinifera] 0.977 0.882 0.688 0.0
>gi|255569446|ref|XP_002525690.1| cationic amino acid transporter, putative [Ricinus communis] gi|223534990|gb|EEF36673.1| cationic amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/574 (75%), Positives = 492/574 (85%), Gaps = 9/574 (1%)

Query: 1   MGFLVDSQRDGGGDGGYGMFGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIG 60
           MGFLVDSQ++G      G+FG C+R+LVRRKQVDS+H K   SH +LAK L++PHL+AIG
Sbjct: 1   MGFLVDSQKEGK----LGVFGGCIRSLVRRKQVDSIHAKAHNSHHQLAKELSVPHLIAIG 56

Query: 61  VGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120
           VGSTIGAGVYILVGTVAREHSGPALA+SFLIAGIA+A SAFCYAELASRCPSAGSAYHYS
Sbjct: 57  VGSTIGAGVYILVGTVAREHSGPALAISFLIAGIAAALSAFCYAELASRCPSAGSAYHYS 116

Query: 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGII 180
           YICVGEG AWLIGWALILEYTIGGSAVARGISPNLA+LFG  DSLP F+ARQ IPGL I+
Sbjct: 117 YICVGEGAAWLIGWALILEYTIGGSAVARGISPNLALLFGGQDSLPAFLARQHIPGLDIV 176

Query: 181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP 240
           VDPCAA+LV+IVTGLLCVGIKEST+ QAIVTT NV AMLFVII GSYLGFKTGW GYELP
Sbjct: 177 VDPCAAVLVVIVTGLLCVGIKESTLVQAIVTTVNVCAMLFVIIVGSYLGFKTGWPGYELP 236

Query: 241 TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLV 300
           TGYF FGV+GMLAGSATVFFA+IGFD+VASTAEEVKNPQRDLP+GIG ALSICC+LYMLV
Sbjct: 237 TGYFAFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPMGIGFALSICCSLYMLV 296

Query: 301 SIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360
           S+VIVGLVPY+ M+PDTPISSAFA HGMHWA+Y+IT GAV ALCSTLMGS+LPQPRILMA
Sbjct: 297 SVVIVGLVPYFAMNPDTPISSAFAEHGMHWAAYIITAGAVMALCSTLMGSLLPQPRILMA 356

Query: 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVA 420
           MARDGLLPPFFSDVN++TQ+P+KST+ TG  AA LAF M+V  LAGMVSVGTLLAFTMVA
Sbjct: 357 MARDGLLPPFFSDVNRSTQIPIKSTLTTGAGAAVLAFCMEVDQLAGMVSVGTLLAFTMVA 416

Query: 421 ISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKK 480
           ISVLILRYVPPDEVP PS+LQ +IDSVSL +S      +G+      GT   T PLL K 
Sbjct: 417 ISVLILRYVPPDEVPFPSSLQDTIDSVSLLYSAKGQDTNGEKSEVHAGT-SSTLPLLGKT 475

Query: 481 GGAVSYPLIKQVQD----ILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTL 536
             AV Y +I + +     +L EENRR +AGWTI FTCIG F+LTY+A+DLSLP   + TL
Sbjct: 476 NAAVDYHVIGKEEAQGSFLLKEENRRKIAGWTIAFTCIGAFLLTYSATDLSLPGPFRFTL 535

Query: 537 CGIGGALLLCGLIVLTSINQDEARHNFGHAGGMV 570
           CG+GGA+LL GL+VLT I QD+ARH+FGH+GG +
Sbjct: 536 CGVGGAVLLFGLVVLTCIEQDDARHSFGHSGGFI 569

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224123888|ref|XP_002319189.1| cationic amino acid transporter [Populus trichocarpa] gi|222857565|gb|EEE95112.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224144852|ref|XP_002325438.1| cationic amino acid transporter [Populus trichocarpa] gi|222862313|gb|EEE99819.1| cationic amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|30696198|ref|NP_849822.1| cationic amino acid transporter 2 [Arabidopsis thaliana] gi|75308011|sp|Q9ASS7.1|CAAT2_ARATH RecName: Full=Cationic amino acid transporter 2, vacuolar gi|13605811|gb|AAK32891.1|AF367304_1 AT5g36940/MLF18_60 [Arabidopsis thaliana] gi|209529757|gb|ACI49773.1| At1g58030 [Arabidopsis thaliana] gi|332195367|gb|AEE33488.1| cationic amino acid transporter 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297840681|ref|XP_002888222.1| hypothetical protein ARALYDRAFT_475412 [Arabidopsis lyrata subsp. lyrata] gi|297334063|gb|EFH64481.1| hypothetical protein ARALYDRAFT_475412 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|23306414|gb|AAN17434.1| Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225439247|ref|XP_002271330.1| PREDICTED: high affinity cationic amino acid transporter 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085920|emb|CBI31244.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449462747|ref|XP_004149102.1| PREDICTED: cationic amino acid transporter 2, vacuolar-like [Cucumis sativus] gi|449511751|ref|XP_004164044.1| PREDICTED: cationic amino acid transporter 2, vacuolar-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296085919|emb|CBI31243.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
TAIR|locus:2196245635 CAT2 "cationic amino acid tran 0.970 0.891 0.672 2.7e-203
TAIR|locus:2167462609 CAT3 "cationic amino acid tran 0.716 0.686 0.790 1.6e-197
ZFIN|ZDB-GENE-041212-5641 slc7a2 "solute carrier family 0.324 0.294 0.476 1e-88
UNIPROTKB|B3TP03654 SLC7A2 "Low affinity cationic 0.353 0.314 0.451 1.2e-87
ZFIN|ZDB-GENE-091116-69652 slc7a1 "solute carrier family 0.324 0.289 0.465 1.5e-87
UNIPROTKB|F1P388624 SLC7A1 "Uncharacterized protei 0.324 0.302 0.460 3.9e-87
UNIPROTKB|F1N5P6629 SLC7A1 "Uncharacterized protei 0.324 0.300 0.449 6.4e-87
UNIPROTKB|P30825629 SLC7A1 "High affinity cationic 0.324 0.300 0.455 6.4e-87
UNIPROTKB|E2QU34629 SLC7A1 "Uncharacterized protei 0.324 0.300 0.444 6.4e-87
UNIPROTKB|F1NW41609 SLC7A2 "Low affinity cationic 0.322 0.308 0.460 1.7e-86
TAIR|locus:2196245 CAT2 "cationic amino acid transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1967 (697.5 bits), Expect = 2.7e-203, P = 2.7e-203
 Identities = 395/587 (67%), Positives = 453/587 (77%)

Query:     1 MGFLVDSQRDXXXXXXXXXXXCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIG 60
             MGFLVD+Q++             VR+LVRRKQVDS + +    HQ LA+ LT+PHLVAIG
Sbjct:     1 MGFLVDTQKEGGGHSWGY-----VRSLVRRKQVDSANGQ-SHGHQ-LARALTVPHLVAIG 53

Query:    61 VGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120
             VG+TIGAGVYILVGTVAREHSGP+LALSFLIAGIA+  SAFCYAEL+SRCPSAGSAYHYS
Sbjct:    54 VGATIGAGVYILVGTVAREHSGPSLALSFLIAGIAAGLSAFCYAELSSRCPSAGSAYHYS 113

Query:   121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGII 180
             YICVGEGVAW+IGWALILEYTIGGSAVARGISPNLA++FG  D LP  +AR QIPGL I+
Sbjct:   114 YICVGEGVAWIIGWALILEYTIGGSAVARGISPNLALIFGGEDGLPAILARHQIPGLDIV 173

Query:   181 VDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP 240
             VDPCAAILV +VTGLLC+GIKEST AQ IVT  NV  +LFVI+AGSYLGFKTGW GYELP
Sbjct:   174 VDPCAAILVFVVTGLLCMGIKESTFAQGIVTAVNVCVLLFVIVAGSYLGFKTGWPGYELP 233

Query:   241 TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLV 300
             TG+FPFGV+GM AGSATVFFAFIGFD+VASTAEEV+NPQRDLP+GIG AL +CC+LYM+V
Sbjct:   234 TGFFPFGVDGMFAGSATVFFAFIGFDSVASTAEEVRNPQRDLPIGIGLALLLCCSLYMMV 293

Query:   301 SIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360
             SIVIVGL+PYY MDPDTPISSAFASH M WA Y+IT+GAV ALCS LMG++LPQPRILMA
Sbjct:   294 SIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLITLGAVMALCSALMGALLPQPRILMA 353

Query:   361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVA 420
             MARDGLLP  FSD+NK TQVPVK+T+ TG+ AA LAFFMDVS LAGMVSVGTLLAFTMVA
Sbjct:   354 MARDGLLPSIFSDINKRTQVPVKATVATGLCAATLAFFMDVSQLAGMVSVGTLLAFTMVA 413

Query:   421 ISVLILRYVPPDEVPVPSTLXXXXXXXXXXXXXXXXXXXXXXXVDDVGTLRET-EPLLAK 479
             ISVLILRYVPPDE P+PS+L                          VGT   + +PL+  
Sbjct:   414 ISVLILRYVPPDEQPLPSSLQERIDSVSFICGETTSSGH-------VGTSDSSHQPLIVN 466

Query:   480 KGGAVSYPLIKQVQD----ILNEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQXX 535
                 V  PLIK  +     +L+EE RR VAGW+IMFTC+G F+L+YAAS LS P L++  
Sbjct:   467 NDALVDVPLIKNQEALGCLVLSEETRRIVAGWSIMFTCVGAFLLSYAASSLSFPGLIRYP 526

Query:   536 XXXXXXXXXXXXXXXXXSINQDEARHNFGHAGGMV--FIPNFELFMI 580
                              SI+QD+ARH FGH+GG +  F+P   +  I
Sbjct:   527 LCGVGGCLLLAGLIALSSIDQDDARHTFGHSGGYMCPFVPLLPIICI 573
GO:0003333 "amino acid transmembrane transport" evidence=IEA
GO:0006810 "transport" evidence=IEA;ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA
GO:0016020 "membrane" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0006635 "fatty acid beta-oxidation" evidence=RCA
GO:0016558 "protein import into peroxisome matrix" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
TAIR|locus:2167462 CAT3 "cationic amino acid transporter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041212-5 slc7a2 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B3TP03 SLC7A2 "Low affinity cationic amino acid transporter 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-091116-69 slc7a1 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P388 SLC7A1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5P6 SLC7A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P30825 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QU34 SLC7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NW41 SLC7A2 "Low affinity cationic amino acid transporter 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ASS7CAAT2_ARATHNo assigned EC number0.71940.95710.8787yesno
Q8GYB4CAAT3_ARATHNo assigned EC number0.70730.91250.8735nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PtrCAT2
cationic amino acid transporter (640 aa)
(Populus trichocarpa)
Predicted Functional Partners:
GH3-8
GH3 family protein (587 aa)
      • 0.510
MYB102
hypothetical protein (118 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
TIGR00906557 TIGR00906, 2A0303, cationic amino acid transport p 1e-128
TIGR00909429 TIGR00909, 2A0306, amino acid transporter 6e-79
COG0531466 COG0531, PotE, Amino acid transporters [Amino acid 3e-62
pfam13520425 pfam13520, AA_permease_2, Amino acid permease 1e-43
PRK11357445 PRK11357, frlA, putative fructoselysine transporte 2e-31
pfam00324473 pfam00324, AA_permease, Amino acid permease 3e-31
TIGR00911501 TIGR00911, 2A0308, L-type amino acid transporter 6e-30
COG1113462 COG1113, AnsP, Gamma-aminobutyrate permease and re 3e-27
COG0833541 COG0833, LysP, Amino acid transporters [Amino acid 1e-22
TIGR00908442 TIGR00908, 2A0305, ethanolamine permease 5e-22
TIGR00905473 TIGR00905, 2A0302, transporter, basic amino acid/p 1e-20
PRK15049499 PRK15049, PRK15049, L-asparagine permease; Provisi 7e-19
TIGR03428475 TIGR03428, ureacarb_perm, permease, urea carboxyla 6e-16
PRK11049469 PRK11049, PRK11049, D-alanine/D-serine/glycine per 1e-15
PRK10249458 PRK10249, PRK10249, phenylalanine transporter; Pro 2e-15
PRK10238456 PRK10238, PRK10238, aromatic amino acid transporte 3e-15
TIGR00907482 TIGR00907, 2A0304, amino acid permease (GABA perme 4e-15
PRK10644445 PRK10644, PRK10644, arginine:agmatin antiporter; P 6e-14
TIGR00913478 TIGR00913, 2A0310, amino acid permease (yeast) 8e-14
PRK10836489 PRK10836, PRK10836, lysine transporter; Provisiona 4e-13
TIGR01773452 TIGR01773, GABAperm, gamma-aminobutyrate permease 8e-13
PRK11387471 PRK11387, PRK11387, S-methylmethionine transporter 1e-12
PRK10580457 PRK10580, proY, putative proline-specific permease 1e-12
TIGR03810468 TIGR03810, arg_ornith_anti, arginine-ornithine ant 5e-12
TIGR04298429 TIGR04298, his_histam_anti, histidine-histamine an 1e-11
PRK10746461 PRK10746, PRK10746, putative transport protein Yif 1e-10
PRK10197446 PRK10197, PRK10197, gamma-aminobutyrate transporte 4e-08
PRK10655438 PRK10655, potE, putrescine transporter; Provisiona 4e-08
PRK11021410 PRK11021, PRK11021, putative transporter; Provisio 7e-08
TIGR00910507 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyr 1e-05
TIGR03813474 TIGR03813, put_Glu_GABA_T, putative glutamate/gamm 2e-05
TIGR00930 953 TIGR00930, 2a30, K-Cl cotransporter 4e-04
TIGR04299430 TIGR04299, antiport_PotE, putrescine-ornithine ant 4e-04
PRK10435435 PRK10435, cadB, lysine/cadaverine antiporter; Prov 8e-04
>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease Back     alignment and domain information 
 Score =  386 bits (993), Expect = e-128
 Identities = 197/440 (44%), Positives = 267/440 (60%), Gaps = 15/440 (3%)

Query: 25  RTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA 84
           R L+RRK VD       R   K+ + LT   L+A+G+GSTIGAG+Y+L G VAR  SGPA
Sbjct: 8   RCLIRRKIVDL----DSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA 63

Query: 85  LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGG 144
           + LSFLI+G+A+  S FCYAE  +R P AGSAY YSY+ VGE  A++ GW LILEY IG 
Sbjct: 64  IVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGT 123

Query: 145 SAVARGISPNLAMLFGS--ADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202
           +AVAR  S     L           +       GL    D  A  L+L++  LL  G+KE
Sbjct: 124 AAVARSWSAYFDELLNKQIGQFRRTYFKLNY-DGLAEYPDFFAVCLILLLAVLLSFGVKE 182

Query: 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP--TGYFPFGVNGMLAGSATVFF 260
           S     I T  N+L +LFVIIAG        WS  E     G+ P+G  G+L+G+AT FF
Sbjct: 183 SAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFF 242

Query: 261 AFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPIS 320
           AFIGFDA+A+T EEVKNPQR +P+GI T+L +C   Y L+S  +  ++PYY +DPD P  
Sbjct: 243 AFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFP 302

Query: 321 SAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQV 380
            AF   G   A Y++ +GA+  + ++L+G + P PR++ AMARDGLL  + + +N  T+ 
Sbjct: 303 VAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKT 362

Query: 381 PVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVP------PDEV 434
           P+ +T+V+G +AA +AF  D+ AL  ++S+GTLLA+++VA  VLILRY P        + 
Sbjct: 363 PINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDT 422

Query: 435 PVPSTLQSSIDSVSLQFSQS 454
               TL S +   S   SQS
Sbjct: 423 DEKDTLDSWVPFTSKSESQS 442

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557
>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter Back     alignment and domain information
>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease Back     alignment and domain information
>gnl|CDD|183096 PRK11357, frlA, putative fructoselysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease Back     alignment and domain information
>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter Back     alignment and domain information
>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease Back     alignment and domain information
>gnl|CDD|129983 TIGR00905, 2A0302, transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>gnl|CDD|185009 PRK15049, PRK15049, L-asparagine permease; Provisional Back     alignment and domain information
>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system Back     alignment and domain information
>gnl|CDD|236830 PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>gnl|CDD|236667 PRK10249, PRK10249, phenylalanine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182324 PRK10238, PRK10238, aromatic amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease) Back     alignment and domain information
>gnl|CDD|182613 PRK10644, PRK10644, arginine:agmatin antiporter; Provisional Back     alignment and domain information
>gnl|CDD|233181 TIGR00913, 2A0310, amino acid permease (yeast) Back     alignment and domain information
>gnl|CDD|182767 PRK10836, PRK10836, lysine transporter; Provisional Back     alignment and domain information
>gnl|CDD|233567 TIGR01773, GABAperm, gamma-aminobutyrate permease Back     alignment and domain information
>gnl|CDD|236904 PRK11387, PRK11387, S-methylmethionine transporter; Provisional Back     alignment and domain information
>gnl|CDD|182566 PRK10580, proY, putative proline-specific permease; Provisional Back     alignment and domain information
>gnl|CDD|163522 TIGR03810, arg_ornith_anti, arginine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|213911 TIGR04298, his_histam_anti, histidine-histamine antiporter Back     alignment and domain information
>gnl|CDD|182694 PRK10746, PRK10746, putative transport protein YifK; Provisional Back     alignment and domain information
>gnl|CDD|182297 PRK10197, PRK10197, gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>gnl|CDD|182622 PRK10655, potE, putrescine transporter; Provisional Back     alignment and domain information
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional Back     alignment and domain information
>gnl|CDD|129988 TIGR00910, 2A0307_GadC, glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|163525 TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>gnl|CDD|233194 TIGR00930, 2a30, K-Cl cotransporter Back     alignment and domain information
>gnl|CDD|213912 TIGR04299, antiport_PotE, putrescine-ornithine antiporter Back     alignment and domain information
>gnl|CDD|182458 PRK10435, cadB, lysine/cadaverine antiporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 583
TIGR00906557 2A0303 cationic amino acid transport permease. 100.0
KOG1287479 consensus Amino acid transporters [Amino acid tran 100.0
PRK15049499 L-asparagine permease; Provisional 100.0
PRK10249458 phenylalanine transporter; Provisional 100.0
PRK11387471 S-methylmethionine transporter; Provisional 100.0
PRK11357445 frlA putative fructoselysine transporter; Provisio 100.0
PRK10746461 putative transport protein YifK; Provisional 100.0
PRK10655438 potE putrescine transporter; Provisional 100.0
PRK10644445 arginine:agmatin antiporter; Provisional 100.0
PRK10238456 aromatic amino acid transporter; Provisional 100.0
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 100.0
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 100.0
PRK10836489 lysine transporter; Provisional 100.0
PRK10580457 proY putative proline-specific permease; Provision 100.0
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 100.0
TIGR00911501 2A0308 L-type amino acid transporter. 100.0
TIGR00908442 2A0305 ethanolamine permease. The three genes used 100.0
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 100.0
TIGR00909429 2A0306 amino acid transporter. 100.0
KOG1286554 consensus Amino acid transporters [Amino acid tran 100.0
TIGR00913478 2A0310 amino acid permease (yeast). 100.0
PRK10197446 gamma-aminobutyrate transporter; Provisional 100.0
COG0833541 LysP Amino acid transporters [Amino acid transport 100.0
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 100.0
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 100.0
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 100.0
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 100.0
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 100.0
PRK11021410 putative transporter; Provisional 100.0
TIGR00907482 2A0304 amino acid permease (GABA permease). 100.0
PRK15238496 inner membrane transporter YjeM; Provisional 100.0
TIGR00930 953 2a30 K-Cl cotransporter. 100.0
KOG1289550 consensus Amino acid transporters [Amino acid tran 100.0
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 100.0
COG0531466 PotE Amino acid transporters [Amino acid transport 100.0
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
KOG1288 945 consensus Amino acid transporters [Amino acid tran 99.89
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.89
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 99.88
PHA02764399 hypothetical protein; Provisional 99.86
KOG2083643 consensus Na+/K+ symporter [Inorganic ion transpor 99.83
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 99.81
TIGR00814397 stp serine transporter. The HAAAP family includes 99.81
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.77
PRK10483414 tryptophan permease; Provisional 99.73
PRK09664415 tryptophan permease TnaB; Provisional 99.7
PRK15132403 tyrosine transporter TyrP; Provisional 99.66
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.66
PRK13629443 threonine/serine transporter TdcC; Provisional 99.64
PF03845320 Spore_permease: Spore germination protein; InterPr 99.63
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 99.57
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 99.54
TIGR00835425 agcS amino acid carrier protein. Members of the AG 99.45
KOG1303437 consensus Amino acid transporters [Amino acid tran 99.29
PTZ00206467 amino acid transporter; Provisional 99.27
PLN03074473 auxin influx permease; Provisional 99.25
KOG1304449 consensus Amino acid transporters [Amino acid tran 99.18
PRK11375484 allantoin permease; Provisional 98.97
COG1457442 CodB Purine-cytosine permease and related proteins 98.92
COG3949349 Uncharacterized membrane protein [Function unknown 98.9
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 98.9
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 98.65
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.65
TIGR00813407 sss transporter, SSS family. have different number 98.65
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.64
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.63
PRK11017404 codB cytosine permease; Provisional 98.5
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 98.5
COG0733439 Na+-dependent transporters of the SNF family [Gene 98.43
PF01566358 Nramp: Natural resistance-associated macrophage pr 98.34
PRK15433439 branched-chain amino acid transport system 2 carri 98.33
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.3
PRK12488549 acetate permease; Provisional 98.28
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.25
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.22
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.16
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 98.14
KOG1305411 consensus Amino acid transporter protein [Amino ac 98.12
PRK09395551 actP acetate permease; Provisional 98.11
PRK15419502 proline:sodium symporter PutP; Provisional 98.08
TIGR03648552 Na_symport_lg probable sodium:solute symporter, VC 98.07
PRK00701439 manganese transport protein MntH; Reviewed 97.97
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.94
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.92
PRK10484523 putative transporter; Provisional 97.79
PLN00151 852 potassium transporter; Provisional 97.74
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 97.51
PLN00150 779 potassium ion transporter family protein; Provisio 97.39
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.34
PF02705534 K_trans: K+ potassium transporter; InterPro: IPR00 97.28
PLN00149 779 potassium transporter; Provisional 97.16
PLN00148 785 potassium transporter; Provisional 96.86
COG4147529 DhlC Predicted symporter [General function predict 96.6
TIGR00794 688 kup potassium uptake protein. Proteins of the KUP 96.21
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.88
PRK10745622 trkD potassium transport protein Kup; Provisional 95.81
PRK09950506 putative transporter; Provisional 95.52
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.41
COG1292537 BetT Choline-glycine betaine transporter [Cell env 95.41
PRK09928679 choline transport protein BetT; Provisional 95.3
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 95.28
KOG4303524 consensus Vesicular inhibitory amino acid transpor 95.15
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 94.79
KOG2466572 consensus Uridine permease/thiamine transporter/al 93.92
PRK03356504 L-carnitine/gamma-butyrobetaine antiporter; Provis 93.77
COG3158627 Kup K+ transporter [Inorganic ion transport and me 92.24
KOG3660629 consensus Sodium-neurotransmitter symporter [Signa 91.99
PRK15033389 tricarballylate utilization protein B; Provisional 89.05
TIGR00842453 bcct choline/carnitine/betaine transport. properti 87.37
TIGR02484372 CitB CitB domain protein. CobZ is essential for co 83.82
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information 
Probab=100.00  E-value=6.5e-53  Score=461.65  Aligned_cols=406  Identities=47%  Similarity=0.803  Sum_probs=345.7

Q ss_pred             hhhhhhhhccccCcccCCCcccccccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHH
Q 007966           22 CCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAF  101 (583)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l  101 (583)
                      +..+++.|+|+.+++    .+++++++|+++.+|+++++++.++|+|+|..++.++.+.+|++.+++|+++++..++.++
T Consensus         5 ~~~~~~~r~k~~~~~----~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al   80 (557)
T TIGR00906         5 TFARCLIRRKIVDLD----SREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGF   80 (557)
T ss_pred             HHHHHHhccCCcccc----cccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence            445667777777652    1123468999999999999999999999999999877677899999999999999999999


Q ss_pred             HHHHHhhhCcCCCchhhhHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-hh-hhhhhccCCCCcc
Q 007966          102 CYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS-LP-FFMARQQIPGLGI  179 (583)
Q Consensus       102 ~~~el~s~~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  179 (583)
                      +++|+++++|++||.|.|+++.+|+.+||+++|.+++.|....+..+.+.+.++...+..... .. .... ...+....
T Consensus        81 ~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~-~~~~~l~~  159 (557)
T TIGR00906        81 CYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFK-LNYDGLAE  159 (557)
T ss_pred             HHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc-ccCCcccc
Confidence            999999999999999999999999999999999999999999999888888888776642100 00 0000 00011111


Q ss_pred             chhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--CCCCCCCCCchhhhHHHHHHH
Q 007966          180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPTGYFPFGVNGMLAGSAT  257 (583)
Q Consensus       180 ~~~~~~i~~~~~~~~i~~~gvk~~~~i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  257 (583)
                      ....++++++++++.+|.+|+|..++++++.+.++++.++++++.++.....+++..  ....+++.|.++.+++.+...
T Consensus       160 ~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~  239 (557)
T TIGR00906       160 YPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAAT  239 (557)
T ss_pred             cchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHH
Confidence            223567777888899999999999999999999999998888888775433333321  111235667777889999999


Q ss_pred             HHHHhhhhhHHHhhhhhhhCcCCchhhHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCChHHHHHHHcchhHHHHHHHH
Q 007966          258 VFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITI  337 (583)
Q Consensus       258 ~~fa~~G~e~~~~~~~E~knP~k~~p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~~~~~~~~~~~~~g~~~~~~i~~~  337 (583)
                      .+|+|.|+|.+++++||+|||+||+||+++.+.++++++|++.++++....|+++++.++|+..+++..+.++...++.+
T Consensus       240 ~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~  319 (557)
T TIGR00906       240 CFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAV  319 (557)
T ss_pred             HHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988888899999998888888899999


Q ss_pred             HHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccCCchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 007966          338 GAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFT  417 (583)
Q Consensus       338 ~~~~~~~~~~~~~~~~~sR~l~~~a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~~~~~~l~~l~~~~~~~~~~  417 (583)
                      +.+.+.++++++.+++.+|++++|+|||.+|++|+|+|+|+++|++++++.++++.++.++.+.+.+.++.+++.++.|.
T Consensus       320 ~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~  399 (557)
T TIGR00906       320 GALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYS  399 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999888999999999999999888888999999999999999999


Q ss_pred             HHHHHHHHHhccCCC
Q 007966          418 MVAISVLILRYVPPD  432 (583)
Q Consensus       418 ~~~~a~i~lr~~~~~  432 (583)
                      +++++.+++|++++.
T Consensus       400 lv~~~~l~lR~~~~~  414 (557)
T TIGR00906       400 LVAACVLILRYQPGL  414 (557)
T ss_pred             HHHHHHHHhhccccc
Confidence            999999999987543

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PLN00151 potassium transporter; Provisional Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PLN00150 potassium ion transporter family protein; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members Back     alignment and domain information
>PLN00149 potassium transporter; Provisional Back     alignment and domain information
>PLN00148 potassium transporter; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>TIGR00794 kup potassium uptake protein Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>PRK10745 trkD potassium transport protein Kup; Provisional Back     alignment and domain information
>PRK09950 putative transporter; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK09928 choline transport protein BetT; Provisional Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional Back     alignment and domain information
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>PRK15033 tricarballylate utilization protein B; Provisional Back     alignment and domain information
>TIGR00842 bcct choline/carnitine/betaine transport Back     alignment and domain information
>TIGR02484 CitB CitB domain protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
3gi9_C444 Crystal Structure Of Apct Transporter Bound To 7f11 3e-15
3gi8_C444 Crystal Structure Of Apct K158a Transporter Bound T 7e-15
3ncy_A445 X-Ray Crystal Structure Of An Arginine Agmatine Ant 8e-13
3l1l_A445 Structure Of Arg-Bound Escherichia Coli Adic Length 1e-11
3lrb_A445 Structure Of E. Coli Adic Length = 445 3e-11
3ob6_A445 Structure Of Adic(N101a) In The Open-To-Out Arg+ Bo 2e-10
>pdb|3GI9|C Chain C, Crystal Structure Of Apct Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure 
Iteration: 1

 Score = 80.1 bits (196), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 180/392 (45%), Gaps = 34/392 (8%)
Query: 49  KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELAS 108
           K L++   V++ VG  IGA ++ + G V  + +G  L  +F+++GI +   A+ Y +L +
Sbjct: 6   KKLSLWEAVSMAVGVMIGASIFSIFG-VGAKIAGRNLPETFILSGIYALLVAYSYTKLGA 64
Query: 109 RCPSAGSAYHYSYICVGE----GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS 164
           +  S      + +  +G+    G   ++ W   + Y I  +  A+G +     L  +   
Sbjct: 65  KIVSNAGPIAFIHKAIGDNIITGALSILLW---MSYVISIALFAKGFAGYFLPLINA--- 118
Query: 165 LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIA 224
            P       I  +GI         V   T L   G K    A+  +    +L +   I A
Sbjct: 119 -PINTFNIAITEIGI---------VAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA 168
Query: 225 GSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPL 284
           G      T    Y +P    P  V+GM+  SA  F +++GF  + + +E ++NP++++P 
Sbjct: 169 G----LITIHPSYVIPD-LAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPR 223
Query: 285 GIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGM--HWASYVITIGAVTA 342
            I  ++ I   +Y+ V+I  +G +P  E+   +  + A A+     +    +I+IGA+ +
Sbjct: 224 AIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFS 283
Query: 343 LCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVS 402
           + S +  +I     +  ++A+DG LP FF       +V  KST    I +A    F  + 
Sbjct: 284 ISSAMNATIYGGANVAYSLAKDGELPEFFER-----KVWFKSTEGLYITSALGVLFALLF 338
Query: 403 ALAGMVSVGTLLAFTMVAISVLILRYVPPDEV 434
            + G+ S+ T   F ++ + V++  Y+  DEV
Sbjct: 339 NMEGVASI-TSAVFMVIYLFVILSHYILIDEV 369
>pdb|3GI8|C Chain C, Crystal Structure Of Apct K158a Transporter Bound To 7f11 Monoclonal Fab Fragment Length = 444 Back     alignment and structure
>pdb|3NCY|A Chain A, X-Ray Crystal Structure Of An Arginine Agmatine Antiporter (Adic) In Complex With A Fab Fragment Length = 445 Back     alignment and structure
>pdb|3L1L|A Chain A, Structure Of Arg-Bound Escherichia Coli Adic Length = 445 Back     alignment and structure
>pdb|3LRB|A Chain A, Structure Of E. Coli Adic Length = 445 Back     alignment and structure
>pdb|3OB6|A Chain A, Structure Of Adic(N101a) In The Open-To-Out Arg+ Bound Conformation Length = 445 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 1e-132
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 2e-86
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 7e-78
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444 Back     alignment and structure
 Score =  393 bits (1012), Expect = e-132
 Identities = 80/396 (20%), Positives = 166/396 (41%), Gaps = 24/396 (6%)

Query: 45  QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYA 104
           +   K L++   V++ VG  IGA ++ + G  A + +G  L  +F+++GI +   A+ Y 
Sbjct: 2   ELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYT 60

Query: 105 ELASRCPSAGSAYHYSYICVGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD 163
           +L ++  S      + +  +G+  +   +   L + Y I  +  A+G +     L  +  
Sbjct: 61  KLGAKIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-- 118

Query: 164 SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVII 223
                      P     +      +V   T L   G K    A+  +    +L +   I 
Sbjct: 119 -----------PINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIF 167

Query: 224 AGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283
           AG      +            P  V+GM+  SA  F +++GF  + + +E ++NP++++P
Sbjct: 168 AGLITIHPSYVI-----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVP 222

Query: 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVT 341
             I  ++ I   +Y+ V+I  +G +P  E+    +  ++ A      +    +I+IGA+ 
Sbjct: 223 RAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALF 282

Query: 342 ALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV 401
           ++ S +  +I     +  ++A+DG LP FF           +   +T  +    A   ++
Sbjct: 283 SISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFK--STEGLYITSALGVLFALLFNM 340

Query: 402 SALAGMVSVGTLLAFTMVAISVLILRYVPPDEVPVP 437
             +A + S   ++ +  V +S  IL         + 
Sbjct: 341 EGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIV 376
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445 Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 100.0
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 100.0
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 100.0
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.07
3dh4_A530 Sodium/glucose cotransporter; membrane protein, sy 98.07
2xq2_A593 Sodium/glucose cotransporter; transport protein, i 97.99
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.78
2wsw_A509 BCCT family betaine/carnitine/choline transporter; 87.95
4ain_A539 Glycine betaine transporter BETP; membrane protein 83.76
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=100.00  E-value=2.7e-46  Score=401.37  Aligned_cols=365  Identities=22%  Similarity=0.318  Sum_probs=308.3

Q ss_pred             ccccccChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhCcCCCchhhhHHHHhC
Q 007966           46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG  125 (583)
Q Consensus        46 ~l~r~l~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii~~l~~~~~~l~~~el~s~~p~~GG~y~~~~~~~g  125 (583)
                      +++|+++++++.++.+++++|+|+|..++.++  .+|+.++++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G   82 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFG   82 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSC
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcC
Confidence            46789999999999999999999999988743  4688899999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHhhhHHHHH
Q 007966          126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI  205 (583)
Q Consensus       126 ~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~gvk~~~~  205 (583)
                      |++|++.+|.+|+.+....+......++++...+.      ..       ..++...+++++++++++.+|.+|+|...+
T Consensus        83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~~~~~~~~~~~~~~~in~~g~~~~~~  149 (445)
T 3l1l_A           83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP------IL-------KDPWVLTITCVVVLWIFVLLNIVGPKMITR  149 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCG------GG-------GSHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc------cc-------cccHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            99999999999999988887777666666543321      10       011233456888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCc---hhhhHHHHHHHHHHHhhhhhHHHhhhhhhhCcCCch
Q 007966          206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL  282 (583)
Q Consensus       206 i~~~~~~~~ii~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~fa~~G~e~~~~~~~E~knP~k~~  282 (583)
                      ++.+...++++.++.+++.++.....+   ++.  +++.+.   ++.+++.++...+|+|.|+|.++++++|+|||+|++
T Consensus       150 ~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~i  224 (445)
T 3l1l_A          150 VQAVATVLALIPIVGIAVFGWFWFRGE---TYM--AAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNV  224 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSTTCCCC---CCC--CC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhChh---hcc--cccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccc
Confidence            999999999988877776665432111   111  112222   255788889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhcccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007966          283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM  361 (583)
Q Consensus       283 p~a~~~~~~i~~vlyil~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~  361 (583)
                      ||++..+..+++++|++.++++....|++++. .++|..+++++.++++...++.+..+++.+++.++.+++.+|+++++
T Consensus       225 p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~  304 (445)
T 3l1l_A          225 PIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAA  304 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988874 45789999999988999999999999999999999999999999999


Q ss_pred             HhcCCCcccccccccccCCchHHHHHHHHHHHHHHHh-------hCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 007966          362 ARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-------MDVSALAGMVSVGTLLAFTMVAISVLILRYVPP  431 (583)
Q Consensus       362 a~dg~lP~~~~k~n~~~g~P~~aill~~~l~~il~~~-------~~~~~l~~l~~~~~~~~~~~~~~a~i~lr~~~~  431 (583)
                      +|||.+|++|+|+||+ ++|.++++++.+++.++.++       ..++++.++.+...++.|.+.+++++++|+|+|
T Consensus       305 a~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          305 ADDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             HHTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             HhCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            9999999999999987 99999999999988776654       236789999999999999999999999998765
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A* Back     alignment and structure
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 97.5
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.50  E-value=0.019  Score=59.11  Aligned_cols=58  Identities=17%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             ChHHHHHHHHhhhhhhhHHHhHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHhhh
Q 007966           52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLI-AGIASAFSAFCYAELASR  109 (583)
Q Consensus        52 ~~~~~~~l~~~~viG~gif~~~~~i~~~~~G~~~i~~~ii-~~l~~~~~~l~~~el~s~  109 (583)
                      +..+.++-.++..+|.|++..-+....++||..-++.+++ ..++.+|...+-.-+|+.
T Consensus         6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~   64 (509)
T d2a65a1           6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRY   64 (509)
T ss_dssp             CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4466777788899999999888888889999885555554 444555544433333443