Citrus Sinensis ID: 007985

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580--
MASANALSSASILCSPKQGSLRRRGNQNQGQRVNYRRFAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV
cccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccEEEEEcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEccccccccEEEEEcccccccccccccccccccEEEEcccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEcccccccccccccccccccEEEEEcccEEEEcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEEcccccHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
cccHHHHHHcHEcccccccccEcccccccccEccHHHHHHHHccEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHHccccccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcEEEcccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHccccEEEEccccEEEEccccccEEEHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccccccccccc
masanalssasilcspkqgslrrrgnqnqgqrvnYRRFAVRASAKDIAFDQRSRAAMQAGIDKLSdavgltlgprgrnvvldefgspkvvndGVTIARAIELADPMENAGAALIREVASktndsagdgtTTASVLAREIIKLGLLsvtsganpvslkrgidKTVHGLVEELEKrarpiegrddiKAVAtisagnddlIGTMIADAidkvgpdgvlsiessssfetTVEVEegmeidrgyispqfvtnpEKLIVEFENARVLVTDQKISAIKDIIPLLekttqlraPLLIIAEDVTGEALATLVVNKLRGILNVaaikapgfGERRKALLQDIAIVTgaefqagdlgllieNTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAetdsvydsEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAieegivpgggAALVHLSDHVPAIKDKLEDADERLGADIVQKALVapasliahnagveGEVVVEKVKdsewttgyNAMTDKYENMLqagvidpakVTRCALQNAASVAGMVLTTQAIvvekpkpktpvaappqglmv
masanalssasilcspkqgslrrrgnqnqgqrvnyrrfavRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVldefgspkvvndGVTIARAIELADPMENAGAALIREVasktndsagdGTTTASVLAREIIKLGllsvtsganpvslkrgidktvHGLVEElekrarpiegrddikavatisagnddlIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENtsveqlgtarkvtirkdsttiiadaaskdeIQARIAQLKKElaetdsvydsEKLAERIAKLSGGVAVIKVgaateteledrklRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIahnagvegevvvEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAivvekpkpktpvaappqglmv
MasanalssasILCSPKqgslrrrgnqnqgqrvnyrrFAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLsiessssfettveveeGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAgvegevvvekvkDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIvvekpkpktpvaappQGLMV
**********************************YRRFAVRASAKDIAF*******MQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIR***************TASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELE*****IEGRDDIKAVATISAGNDDLIGTMIADAIDKV*************************IDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAA****IQARIAQL*********VYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV******************
*************************************FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK********DDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV******************
***********ILCSP***************RVNYRRFAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPK**************
****************KQGSLRRR***NQGQRVNYRRFAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKP*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MASANALSSASILCSPKQGSLRRRGNQNQGQRVNYRRFAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASxxxxxxxxxxxxxxxxxxxxxYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query582 2.2.26 [Sep-21-2011]
P08926587 RuBisCO large subunit-bin N/A no 0.996 0.988 0.862 0.0
P21239546 RuBisCO large subunit-bin N/A no 0.938 1.0 0.886 0.0
P21238586 Chaperonin 60 subunit alp yes no 0.979 0.972 0.842 0.0
P34794583 RuBisCO large subunit-bin N/A no 0.994 0.993 0.841 0.0
P08823543 RuBisCO large subunit-bin N/A no 0.927 0.994 0.840 0.0
P08824495 RuBisCO large subunit-bin N/A no 0.850 1.0 0.915 0.0
Q42694580 RuBisCO large subunit-bin N/A no 0.936 0.939 0.726 0.0
Q56XV8575 Chaperonin 60 subunit alp no no 0.962 0.973 0.610 0.0
B0CFQ6558 60 kDa chaperonin 1 OS=Ac yes no 0.910 0.949 0.614 0.0
Q2JKV7539 60 kDa chaperonin 2 OS=Sy yes no 0.922 0.996 0.593 0.0
>sp|P08926|RUBA_PEA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2 Back     alignment and function desciption
 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/589 (86%), Positives = 548/589 (93%), Gaps = 9/589 (1%)

Query: 1   MASANALSSASILCSPK---QGSLRRRGNQNQGQRVNYR----RFAVRASAKDIAFDQRS 53
           MAS NALSS SIL SP    Q SL ++  Q+   RVN+R    RF V+A+AKDIAFDQ S
Sbjct: 1   MASTNALSSTSILRSPTNQAQTSLSKKVKQHG--RVNFRQKPNRFVVKAAAKDIAFDQHS 58

Query: 54  RAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAAL 113
           R+AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAAL
Sbjct: 59  RSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAAL 118

Query: 114 IREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEK 173
           IREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV  LVEELEK
Sbjct: 119 IREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEK 178

Query: 174 RARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGM 233
            ARP++G DDIKAVATISAGND+LIG MIA+AIDKVGPDGVLSIESS+SFETTVEVEEGM
Sbjct: 179 LARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDGVLSIESSNSFETTVEVEEGM 238

Query: 234 EIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAED 293
           EIDRGYISPQFVTNPEK IVEFENARVL+TDQKISAIKDIIPLLEKTTQLRAPLLII+ED
Sbjct: 239 EIDRGYISPQFVTNPEKSIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIISED 298

Query: 294 VTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTS 353
           +TGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAI+TGAEFQA DLGLL+ENT+
Sbjct: 299 ITGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTT 358

Query: 354 VEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLS 413
           +EQLG ARKVTI KDSTTIIADAASKDE+Q+R+AQLKKEL+ETDS+YDSEKLAERIAKLS
Sbjct: 359 IEQLGLARKVTISKDSTTIIADAASKDELQSRVAQLKKELSETDSIYDSEKLAERIAKLS 418

Query: 414 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKL 473
           GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KL
Sbjct: 419 GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKL 478

Query: 474 EDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQA 533
           EDADERLGADIVQKALVAPA+LIA NAG+EGEVVVEK+K+ EW  GYNAMTD YEN++++
Sbjct: 479 EDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVES 538

Query: 534 GVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV 582
           GVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPK  VAA PQGL +
Sbjct: 539 GVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587
This protein binds RuBisCO small and large subunits and is implicated in the assembly of the enzyme oligomer.
Pisum sativum (taxid: 3888)
>sp|P21239|RUB1_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2 Back     alignment and function description
>sp|P21238|CPNA1_ARATH Chaperonin 60 subunit alpha 1, chloroplastic OS=Arabidopsis thaliana GN=CPN60A1 PE=1 SV=2 Back     alignment and function description
>sp|P34794|RUB2_BRANA RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|P08823|RUBA_WHEAT RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|P08824|RUBA_RICCO RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1 Back     alignment and function description
>sp|Q42694|RUBA_CHLRE RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1 Back     alignment and function description
>sp|Q56XV8|CPNA2_ARATH Chaperonin 60 subunit alpha 2, chloroplastic OS=Arabidopsis thaliana GN=CPN60A2 PE=2 SV=1 Back     alignment and function description
>sp|B0CFQ6|CH601_ACAM1 60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1 Back     alignment and function description
>sp|Q2JKV7|CH602_SYNJB 60 kDa chaperonin 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=groL2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
224104681586 predicted protein [Populus trichocarpa] 1.0 0.993 0.901 0.0
224132004587 predicted protein [Populus trichocarpa] 0.994 0.986 0.900 0.0
359479362586 PREDICTED: ruBisCO large subunit-binding 1.0 0.993 0.895 0.0
356542646584 PREDICTED: ruBisCO large subunit-binding 0.996 0.993 0.889 0.0
356539332584 PREDICTED: ruBisCO large subunit-binding 0.996 0.993 0.887 0.0
147819511576 hypothetical protein VITISV_037064 [Viti 0.982 0.993 0.873 0.0
346229113584 putative rubisco subunit binding-protein 0.996 0.993 0.885 0.0
84468456588 putative rubisco subunit binding-protein 0.996 0.986 0.862 0.0
84468296588 putative rubisco subunit binding-protein 0.996 0.986 0.861 0.0
84468438588 putative rubisco subunit binding-protein 0.996 0.986 0.859 0.0
>gi|224104681|ref|XP_002313525.1| predicted protein [Populus trichocarpa] gi|222849933|gb|EEE87480.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/586 (90%), Positives = 561/586 (95%), Gaps = 4/586 (0%)

Query: 1   MASANALSSASILCSPKQGSLRRRGNQNQGQRVNY----RRFAVRASAKDIAFDQRSRAA 56
           MA++NALS+ASILCSPKQG LRR+GNQ    R+N+    RRFAVRA+AKDIAFDQ SRAA
Sbjct: 1   MATSNALSTASILCSPKQGGLRRKGNQQHNSRLNFGQSTRRFAVRANAKDIAFDQDSRAA 60

Query: 57  MQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIRE 116
           +Q+GIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIRE
Sbjct: 61  LQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIRE 120

Query: 117 VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRAR 176
           VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+K+GIDKTV GLVEELEKRAR
Sbjct: 121 VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVQGLVEELEKRAR 180

Query: 177 PIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEID 236
           P++GRDDIKAVATISAGND+LIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEID
Sbjct: 181 PVKGRDDIKAVATISAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEID 240

Query: 237 RGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTG 296
           RGYISPQFVTNPEKLI  FENARVLVTDQKISAIKDIIPLLEKTTQLR+PLLIIAEDVTG
Sbjct: 241 RGYISPQFVTNPEKLICVFENARVLVTDQKISAIKDIIPLLEKTTQLRSPLLIIAEDVTG 300

Query: 297 EALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQ 356
           EALATLVVNKLRGILNV+AIKAPGFGERRKA+LQDIAI+TGAEFQA DLGL IENTS+EQ
Sbjct: 301 EALATLVVNKLRGILNVSAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLSIENTSIEQ 360

Query: 357 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGV 416
           LG ARKVTI KDSTTIIADAASKDE+QARIAQLKKEL+ETDSVYDSEKLAERIAKLSGGV
Sbjct: 361 LGLARKVTISKDSTTIIADAASKDELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGV 420

Query: 417 AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDA 476
           AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS HVPAIK+K++DA
Sbjct: 421 AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTHVPAIKEKIKDA 480

Query: 477 DERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAMTDKYENMLQAGVI 536
           DERLGADIVQKALVAPASLIA NAG+EGEVVVEK+K+SEW  GYNAMTDKYEN+++AGVI
Sbjct: 481 DERLGADIVQKALVAPASLIAQNAGIEGEVVVEKLKESEWEMGYNAMTDKYENLVEAGVI 540

Query: 537 DPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGLMV 582
           DPAKVTRCALQN+ASVAGMVLTTQAIVVEKPKP+TP AA PQGL V
Sbjct: 541 DPAKVTRCALQNSASVAGMVLTTQAIVVEKPKPRTPAAASPQGLTV 586

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224132004|ref|XP_002328161.1| predicted protein [Populus trichocarpa] gi|222837676|gb|EEE76041.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359479362|ref|XP_002277357.2| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356542646|ref|XP_003539777.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356539332|ref|XP_003538152.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|147819511|emb|CAN69818.1| hypothetical protein VITISV_037064 [Vitis vinifera] Back     alignment and taxonomy information
>gi|346229113|gb|AEO21430.1| putative rubisco subunit binding-protein alpha subunit [Glycine max] Back     alignment and taxonomy information
>gi|84468456|dbj|BAE71311.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information
>gi|84468296|dbj|BAE71231.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468304|dbj|BAE71235.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468426|dbj|BAE71296.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information
>gi|84468438|dbj|BAE71302.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query582
TAIR|locus:2057841586 CPN60A "chaperonin-60alpha" [A 0.936 0.930 0.8 2.3e-222
TAIR|locus:2144955575 Cpn60alpha2 "chaperonin-60alph 0.898 0.909 0.593 5.7e-162
UNIPROTKB|Q05972541 groL1 "60 kDa chaperonin 1" [S 0.883 0.950 0.536 1.1e-142
TIGR_CMR|CHY_0807540 CHY_0807 "chaperonin GroL" [Ca 0.890 0.959 0.531 9.2e-139
TIGR_CMR|BA_0267544 BA_0267 "chaperonin, 60 kDa" [ 0.884 0.946 0.530 2e-136
TIGR_CMR|CJE_1356545 CJE_1356 "co-chaperonin GroEL" 0.881 0.941 0.520 8.5e-136
TIGR_CMR|GSU_3340544 GSU_3340 "60 kDa chaperonin" [ 0.888 0.950 0.510 1.4e-135
TIGR_CMR|SPO_0887546 SPO_0887 "chaperonin, 60 kDa" 0.890 0.948 0.498 7.9e-133
UNIPROTKB|P0A335540 groL "60 kDa chaperonin" [Stre 0.884 0.953 0.511 3.4e-132
TAIR|locus:2193839600 CPN60B "chaperonin 60 beta" [A 0.898 0.871 0.5 1.5e-131
TAIR|locus:2057841 CPN60A "chaperonin-60alpha" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2147 (760.8 bits), Expect = 2.3e-222, P = 2.3e-222
 Identities = 436/545 (80%), Positives = 476/545 (87%)

Query:    38 FAVRASAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIA 97
             F+VRA+ K+IAFDQ SRAA+QAGIDKL+D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIA
Sbjct:    42 FSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIA 101

Query:    98 RAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLK 157
             RAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLK
Sbjct:   102 RAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLK 161

Query:   158 RGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXX 217
             RGIDKTV GL+EEL+K+ARP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDGVL  
Sbjct:   162 RGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSI 221

Query:   218 XXXXXXXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLL 277
                           GMEIDRGYISPQFVTNPEKL+ EFENARVL+TDQKI+AIKDIIP+L
Sbjct:   222 ESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPIL 281

Query:   278 EKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTG 337
             EKTTQLRAPLLIIAEDVTGEALATLVVNKLRG+LNV A+KAPGFGERRKA+LQDIAI+TG
Sbjct:   282 EKTTQLRAPLLIIAEDVTGEALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTG 341

Query:   338 AEFQAGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETD 397
             AE+ A D+ LL+EN +++QLG ARKVTI KDSTT+IADAASKDE+QARIAQLKKEL ETD
Sbjct:   342 AEYLAMDMSLLVENATIDQLGIARKVTISKDSTTLIADAASKDELQARIAQLKKELFETD 401

Query:   398 SVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA 457
             SVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA
Sbjct:   402 SVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA 461

Query:   458 ALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXXDSEWT 517
             ALVHLS  +PAIK+  EDADERLGADIVQKAL++PA+LIA NA             S+W 
Sbjct:   462 ALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWE 521

Query:   518 TGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXX 577
              GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI               
Sbjct:   522 NGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAP 581

Query:   578 QGLMV 582
             +GLMV
Sbjct:   582 EGLMV 586
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0042026 "protein refolding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0009658 "chloroplast organization" evidence=RCA;IMP
GO:0009790 "embryo development" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0016020 "membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
TAIR|locus:2144955 Cpn60alpha2 "chaperonin-60alpha2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q05972 groL1 "60 kDa chaperonin 1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0807 CHY_0807 "chaperonin GroL" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0267 BA_0267 "chaperonin, 60 kDa" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1356 CJE_1356 "co-chaperonin GroEL" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3340 GSU_3340 "60 kDa chaperonin" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0887 SPO_0887 "chaperonin, 60 kDa" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P0A335 groL "60 kDa chaperonin" [Streptococcus pneumoniae TIGR4 (taxid:170187)] Back     alignment and assigned GO terms
TAIR|locus:2193839 CPN60B "chaperonin 60 beta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2JKV7CH602_SYNJBNo assigned EC number0.59360.92260.9962yesno
Q05972CH601_SYNY3No assigned EC number0.56020.90720.9759N/Ano
Q8YVS8CH602_NOSS1No assigned EC number0.61980.90890.9446yesno
B0CFQ6CH601_ACAM1No assigned EC number0.61420.91060.9498yesno
B1I661CH60_DESAPNo assigned EC number0.56570.89510.9524yesno
B8E1A9CH60_DICTDNo assigned EC number0.55490.91400.9888yesno
Q7WVY0CH602_ANASLNo assigned EC number0.60.91400.9551N/Ano
P22034CH602_SYNY3No assigned EC number0.58450.90720.9565N/Ano
P34794RUB2_BRANANo assigned EC number0.84120.99480.9931N/Ano
P21238CPNA1_ARATHNo assigned EC number0.84200.97930.9726yesno
P21239RUB1_BRANANo assigned EC number0.88640.93811.0N/Ano
Q42694RUBA_CHLRENo assigned EC number0.72620.93640.9396N/Ano
B5YDR9CH60_DICT6No assigned EC number0.55490.91400.9888yesno
C1A8L8CH60_GEMATNo assigned EC number0.55550.90200.9668yesno
Q7TV93CH602_PROMANo assigned EC number0.54730.90370.9651yesno
Q7TUS4CH602_PROMMNo assigned EC number0.54860.91060.9742yesno
A5GV53CH60_SYNR3No assigned EC number0.55050.91060.9689yesno
Q7MBB4CH602_GLOVINo assigned EC number0.59250.91580.9638yesno
P08823RUBA_WHEATNo assigned EC number0.84070.92780.9944N/Ano
Q3AZK3CH601_SYNS9No assigned EC number0.55610.91060.9742yesno
A2C4I2CH602_PROM1No assigned EC number0.54420.91400.9797yesno
Q67KB8CH60_SYMTHNo assigned EC number0.56660.92430.9962yesno
B3DZP5CH60_METI4No assigned EC number0.55140.92090.9852yesno
Q119S1CH601_TRIEINo assigned EC number0.59840.90370.9376yesno
Q3M6L5CH602_ANAVTNo assigned EC number0.62350.90890.9446yesno
Q2RL13CH601_MOOTANo assigned EC number0.56110.91920.9925yesno
Q5N3T6CH602_SYNP6No assigned EC number0.55530.91400.9585yesno
Q2JXD4CH601_SYNJANo assigned EC number0.59770.91920.9870yesno
Q318V6CH602_PROM9No assigned EC number0.53880.91920.9816yesno
P0A338CH602_THEVLNo assigned EC number0.58610.90890.9742N/Ano
P0A337CH602_THEEBNo assigned EC number0.58610.90890.9742yesno
O50323CH601_THEVLNo assigned EC number0.56810.90370.9651N/Ano
Q0I7U3CH602_SYNS3No assigned EC number0.55550.89860.9631yesno
A5GNA9CH602_SYNPWNo assigned EC number0.55800.91060.9742yesno
A2C6Z6CH601_PROM3No assigned EC number0.55050.91060.9742yesno
Q65MZ8CH60_BACLDNo assigned EC number0.56650.89510.9577yesno
P08926RUBA_PEANo assigned EC number0.86240.99650.9880N/Ano
P08824RUBA_RICCONo assigned EC number0.91510.85051.0N/Ano
Q7TTX1CH601_SYNPXNo assigned EC number0.55610.91060.9742yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_IX0706
SubName- Full=Putative uncharacterized protein; (587 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2088.1
hypothetical protein (955 aa)
      • 0.588
estExt_fgenesh4_pm.C_LG_I0780
hypothetical protein (97 aa)
•     • 0.546
estExt_Genewise1_v1.C_LG_VIII0130
hypothetical protein (97 aa)
•     • 0.545
estExt_Genewise1_v1.C_LG_III0383
hypothetical protein (681 aa)
  •   • 0.526
estExt_fgenesh4_pg.C_LG_X1007
hypothetical protein (97 aa)
•     • 0.520
estExt_fgenesh4_pm.C_LG_IX0449
SubName- Full=Putative uncharacterized protein; (97 aa)
•     • 0.507
estExt_Genewise1_v1.C_LG_XVIII0619
hypothetical protein (258 aa)
• ••  • 0.499
estExt_Genewise1_v1.C_280199
SubName- Full=Putative uncharacterized protein; (256 aa)
• ••  • 0.487
grail3.3134000101
Predicted protein (100 aa)
      • 0.451
rps3
RecName- Full=30S ribosomal protein S3, chloroplastic; (74 aa)
  •     0.429

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.0
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
CHL00093529 CHL00093, groEL, chaperonin GroEL 0.0
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.0
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 0.0
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 0.0
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 0.0
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-177
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-152
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-131
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-113
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-34
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 2e-18
cd03343517 cd03343, cpn60, cpn60 chaperonin family 2e-09
cd03343517 cd03343, cpn60, cpn60 chaperonin family 3e-09
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 7e-09
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 3e-07
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 4e-07
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 7e-07
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 2e-06
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 3e-06
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 3e-06
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 3e-06
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 4e-06
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-05
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 2e-05
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 5e-05
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 3e-04
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 4e-04
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 8e-04
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 0.001
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 0.002
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 0.003
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 0.004
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  810 bits (2096), Expect = 0.0
 Identities = 309/522 (59%), Positives = 407/522 (77%), Gaps = 3/522 (0%)

Query: 45  KDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIELA 103
           KDI F + +R A+  G++KL+DAV +TLGP+GRNVV++  FGSPK+  DGVT+A+ IEL 
Sbjct: 1   KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60

Query: 104 DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKT 163
           DP EN GA L++EVASKTND AGDGTTTA+VLAR IIK GL +V +GANP+ LKRGI+K 
Sbjct: 61  DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120

Query: 164 VHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSSSF 223
           V  +VEEL+K ++P++ +++I  VATISA  D+ IG +IA+A++KVG DGV+++E   + 
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180

Query: 224 ETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQL 283
           ET +EV EGM+ DRGY+SP FVT+PEK+ VE EN  +L+TD+KIS+I++++P+LE   + 
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240

Query: 284 RAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAG 343
             PLLIIAEDV GEALATLVVNKLRG L V A+KAPGFG+RRKA+L+DIAI+TG    + 
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300

Query: 344 DLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSE 403
           +LGL +E+ ++E LG A+KV + KD TTII  A  K  I+ARIAQ++K++ ET S YD E
Sbjct: 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360

Query: 404 KLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS 463
           KL ER+AKLSGGVAVIKVG ATE EL+++K R+EDA NAT AA+EEGIVPGGG AL+  S
Sbjct: 361 KLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRAS 420

Query: 464 DHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYNAM 523
             +  +  K  + DE+LG +IV++AL AP   IA NAGV+G VVVEKV +S    GY+A 
Sbjct: 421 PALDKL--KALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESPDGFGYDAA 478

Query: 524 TDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVE 565
           T +Y +M++AG+IDP KV R ALQNAASVA ++LTT+A+VV+
Sbjct: 479 TGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 582
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
CHL00093529 groEL chaperonin GroEL 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.95
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.93
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.13
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 96.93
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.4e-113  Score=950.81  Aligned_cols=537  Identities=53%  Similarity=0.833  Sum_probs=515.3

Q ss_pred             ecccchhhhchH--HHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHH
Q 007985           40 VRASAKDIAFDQ--RSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIRE  116 (582)
Q Consensus        40 ~~~~~~~~~~g~--~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e  116 (582)
                      .+.++|++.||.  ++|+.+++||..|+++|++||||+||+|||++ +|+|+|||||+||+|+|+++||++|+||+|+++
T Consensus        52 ~~~~~k~~~~~~~~~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~  131 (600)
T PLN03167         52 KVKAAKELHFNKDGSAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQ  131 (600)
T ss_pred             hhhhcceeecCCcHHHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHH
Confidence            345689999999  79999999999999999999999999999999 999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCch
Q 007985          117 VASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDD  196 (582)
Q Consensus       117 ~a~~~d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~  196 (582)
                      +|++||+++||||||++||+++||+++.++++.|+||..|++||++|.+.+++.|+++++|+++ ++|.++|++|+++++
T Consensus       132 ~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d-~~L~~vA~tS~~~~~  210 (600)
T PLN03167        132 AAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVED-SELADVAAVSAGNNY  210 (600)
T ss_pred             HHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHhccCcH
Confidence            9999999999999999999999999999999999999999999999999999999999999976 679999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHH
Q 007985          197 LIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPL  276 (582)
Q Consensus       197 ~l~~li~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~  276 (582)
                      .|++|+++|+.+++++|.|.++.|++++|++++++|++|++||.+|||++++++|+++++||+||++|++|++++++.++
T Consensus       211 ~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~~~~l~~~  290 (600)
T PLN03167        211 EVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGI  290 (600)
T ss_pred             HHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCCHHHHHHH
Confidence            99999999999999989999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCC
Q 007985          277 LEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQ  356 (582)
Q Consensus       277 le~i~~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~  356 (582)
                      ++++.+.|+||||++++|++++|++|+.|+++|.+++++||+|+|++.++++|+|||++||+++++++.|+++++++.++
T Consensus       291 le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i~~~~~~~l~~~~~~~  370 (600)
T PLN03167        291 LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKVGKEV  370 (600)
T ss_pred             HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEecccccCCcccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888899999999


Q ss_pred             cceeEEEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhH
Q 007985          357 LGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRI  436 (582)
Q Consensus       357 lG~~~~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l  436 (582)
                      ||+|++|++.+++++++++.++++.++.|+.+|+.+++.+.++|++++|++|+++|+|++++|+|||+|+.+++|+||++
T Consensus       371 LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i  450 (600)
T PLN03167        371 LGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRV  450 (600)
T ss_pred             CceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcEEEEEecCCcHHHHHHHHHHH
Confidence            99999999999999999998999999999999999999999999999999999999999999899999999999999999


Q ss_pred             HhHHHHHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhh-cCC
Q 007985          437 EDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVK-DSE  515 (582)
Q Consensus       437 ~DAl~~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~-~~~  515 (582)
                      +||++++++++++|+|||||++|++++.+|++++.+.++.++..+++++++||+.||++||+|||+|+.+++.+|+ +.+
T Consensus       451 ~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~~p~r~La~NAG~d~~~vv~~L~~~~~  530 (600)
T PLN03167        451 EDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDN  530 (600)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcchhhhhhcCCCCHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999988777788888889999999999999999999999999999997 446


Q ss_pred             CceeEEccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCCCCCCC
Q 007985          516 WTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPP  577 (582)
Q Consensus       516 ~~~G~d~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~~~~~~  577 (582)
                      +++|||+.+|+++||++.|||||+.||+++|++|+++|++||++|++|..+|+++++..+.|
T Consensus       531 ~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~iI~~~~~~~~~~~~~~  592 (600)
T PLN03167        531 PKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPVPAGNP  592 (600)
T ss_pred             CCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCC
Confidence            78999999999999999999999999999999999999999999999998876654433333

>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 1e-145
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-143
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-138
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 1e-138
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-138
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-138
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 1e-138
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 1e-138
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-138
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-137
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 1e-137
1ss8_A524 Groel Length = 524 1e-137
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-137
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-137
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-136
1oel_A547 Conformational Variability In The Refined Structure 1e-136
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-136
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-125
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 2e-53
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 7e-53
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 3e-52
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 3e-52
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 1e-51
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 2e-41
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 1e-40
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 2e-40
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 3e-37
1a6d_A545 Thermosome From T. Acidophilum Length = 545 4e-08
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-07
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-07
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-07
3izi_A513 Mm-Cpn Rls With Atp Length = 513 4e-07
3izh_A513 Mm-Cpn D386a With Atp Length = 513 4e-07
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 4e-07
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 4e-07
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 4e-07
1a6d_B543 Thermosome From T. Acidophilum Length = 543 1e-06
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-06
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 2e-06
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-06
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-06
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-06
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-05
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 6e-05
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 7e-05
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-04
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-04
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-04
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-04
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-04
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure 
Iteration: 1

 Score =  511 bits (1317), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/522 (52%), Positives = 370/522 (70%), Gaps = 5/522 (0%)
Query: 44  AKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIEL 102
           AK + FD+ +R A++ G++ +++AV +TLGPRGRNVVL++ FGSP +  DGVT+A+ +EL
Sbjct: 2   AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVEL 61
Query: 103 ADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDK 162
            D +EN GA L++EVASKTND AGDGTTTA+VLA+ I++ GL +V +GANP++LKRGI+K
Sbjct: 62  EDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEK 121
Query: 163 TVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLXXXXXXX 222
            V   VE+++  A P+E R  I+ VATISA ND  +G +IADA++KVG +G++       
Sbjct: 122 AVEAAVEKIKALAIPVEDRKAIEEVATISA-NDPEVGKLIADAMEKVGKEGIITVEESKS 180
Query: 223 XXXXXXXXXGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQ 282
                    G + D+GYISP FVTNPE +    E+A +L+ ++K+S +++++P+LE+  Q
Sbjct: 181 LETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQ 240
Query: 283 LRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQA 342
              PLLIIAEDV GEALATLVVNKLRG L+VAA+KAPGFG+RRK +L+DIA VTG    +
Sbjct: 241 TGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVIS 300
Query: 343 GDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDS 402
            +LG  +EN ++  LG A +V I KD TTI+     K++I+ARI  +KKEL  TDS Y  
Sbjct: 301 EELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAR 360
Query: 403 EKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHL 462
           EKL ER+AKL+GGVAVI+VGAATETEL+++K R EDA NAT AA+EEGIVPGGG  L+  
Sbjct: 361 EKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRA 420
Query: 463 SDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXX--XXDSEWTTGY 520
              V  +  KLE  DE  GA IV++AL  PA  IA NA                    G+
Sbjct: 421 ISAVEELIKKLE-GDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGF 479
Query: 521 NAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 562
           NA T ++ +M++AG++DPAKVTR ALQNAAS+  ++LTT+A+
Sbjct: 480 NAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAV 521
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query582
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 0.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 2e-99
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 4e-97
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-70
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-25
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 1e-20
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 2e-20
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 4e-20
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 5e-20
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 9e-20
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-19
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 1e-19
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 2e-19
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 2e-19
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 4e-19
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 6e-19
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 9e-19
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-18
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 4e-18
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 6e-18
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 4e-17
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-16
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-12
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 2e-09
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 9e-10
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 5e-06
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 6e-09
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 9e-06
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
 Score =  789 bits (2041), Expect = 0.0
 Identities = 268/539 (49%), Positives = 377/539 (69%), Gaps = 3/539 (0%)

Query: 43  SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLD-EFGSPKVVNDGVTIARAIE 101
           +AKD+ F   +   M  G++ L+DAV +TLGP+GRNVVLD  FG+P +  DGV++AR IE
Sbjct: 1   AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIE 60

Query: 102 LADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGID 161
           L D  EN GA +++EVASK ND+AGDGTTTA+VLA+ II  GL +V +G NP+ LKRGID
Sbjct: 61  LEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGID 120

Query: 162 KTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDGVLSIESSS 221
           K V   VEEL+  + P      I  V TISA +D+ +G +IA+A+DKVG +GV+++E  +
Sbjct: 121 KAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGT 180

Query: 222 SFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTT 281
             +  ++V EGM+ DRGY+SP F+  PE   VE E+  +L+ D+KIS I++++P+LE   
Sbjct: 181 GLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA 240

Query: 282 QLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQ 341
           +   PLLIIAEDV GEALATLVVN +RGI+ VAA+KAPGFG+RRKA+LQDIA +TG    
Sbjct: 241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVI 300

Query: 342 AGDLGLLIENTSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYD 401
           + ++G+ +E  ++E LG A++V I KD+TTII     +  IQ R+AQ+++++ E  S YD
Sbjct: 301 SEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYD 360

Query: 402 SEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVH 461
            EKL ER+AKL+GGVAVIKVGAATE E++++K R+EDA +AT AA+EEG+V GGG AL+ 
Sbjct: 361 REKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIR 420

Query: 462 LSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYN 521
           ++  +  ++   ++AD+ +G  +  +A+ AP   I  N G E  VV   VK  +   GYN
Sbjct: 421 VASKLADLRG--QNADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYN 478

Query: 522 AMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTPVAAPPQGL 580
           A T++Y NM+  G++DP KVTR ALQ AASVAG+++TT+ +V + PK          G+
Sbjct: 479 AATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAADLGAAGGM 537
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query582
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.85
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.74
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=1.2e-121  Score=1013.15  Aligned_cols=528  Identities=51%  Similarity=0.818  Sum_probs=513.3

Q ss_pred             cchhhhchHHHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhc
Q 007985           43 SAKDIAFDQRSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKT  121 (582)
Q Consensus        43 ~~~~~~~g~~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~  121 (582)
                      ++|++.||.++|.+|++||..|+++|++||||+||||||++ +|+|+|||||+||+|+|+++||+||+||+|++++|++|
T Consensus         1 ~~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~q   80 (547)
T 1kp8_A            1 AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKA   80 (547)
T ss_dssp             CCEEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhh
Confidence            36899999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             ccccCCCcchHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHH
Q 007985          122 NDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTM  201 (582)
Q Consensus       122 d~~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~l  201 (582)
                      |+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++|++++++|.++|++|++++++|+++
T Consensus        81 d~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~l  160 (547)
T 1kp8_A           81 NDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKL  160 (547)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHH
T ss_pred             ccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999889999999


Q ss_pred             HHHHHHHhCCCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHH
Q 007985          202 IADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTT  281 (582)
Q Consensus       202 i~~ai~~v~~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~  281 (582)
                      +++|+.+++++|.|++++|++++||+++++||+|+++|+||||+++|++|+++++||+||++|++|+++++++++++++.
T Consensus       161 iadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~  240 (547)
T 1kp8_A          161 IAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA  240 (547)
T ss_dssp             HHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHH
T ss_pred             HHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCEEEEecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeE
Q 007985          282 QLRAPLLIIAEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTAR  361 (582)
Q Consensus       282 ~~~~~lvii~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~  361 (582)
                      +.|+||||++++|+++|+++|+.|+++|.++|+|||+|+|+++++++|+|||++|||++++++.|+++++++.++||+|+
T Consensus       241 ~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~  320 (547)
T 1kp8_A          241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAK  320 (547)
T ss_dssp             GGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEE
T ss_pred             hcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEecccccCCcccCCHHHCCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecceEEEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHH
Q 007985          362 KVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKN  441 (582)
Q Consensus       362 ~v~i~~~~~~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~  441 (582)
                      .|+++++++++|++|++++.+++|++||+.+++.++++|+||+|+||+++|+|++|||+|||+|+.+++|+||+++||+|
T Consensus       321 ~v~~~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~  400 (547)
T 1kp8_A          321 RVVINKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALH  400 (547)
T ss_dssp             EEEECSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcCCCceeEE
Q 007985          442 ATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDSEWTTGYN  521 (582)
Q Consensus       442 ~~~~al~~gvVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~~~~~G~d  521 (582)
                      ++++++++|+|||||++|++++.+|++++. .. .++++++++|++||+.||++||+|||+|+.+++.+|++.++++|||
T Consensus       401 ~~r~av~~giVpGGGa~e~~~s~~L~~~~~-~~-g~~q~~i~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~~~~~G~d  478 (547)
T 1kp8_A          401 ATRAAVEEGVVAGGGVALIRVASKLADLRG-QN-ADQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDGNYGYN  478 (547)
T ss_dssp             HHHHHHHHCEEETTTHHHHHHHHHTTTCCC-SS-HHHHHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHSCTTEEEE
T ss_pred             HHHHhccCCEEeCCcHHHHHHHHHHHHHhc-cC-chHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcCCCEeEe
Confidence            999999999999999999999999998875 44 4568999999999999999999999999999999999887899999


Q ss_pred             ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhccCCCCCCC
Q 007985          522 AMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKTP  572 (582)
Q Consensus       522 ~~~g~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~p~~~~~  572 (582)
                      +.+|++.||++.|||||+.||+++|++|+|+|++||++|++|..+|++++|
T Consensus       479 ~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~id~iI~~~~~~~~~  529 (547)
T 1kp8_A          479 AATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPKNDAA  529 (547)
T ss_dssp             TTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECCC----
T ss_pred             CCCCccccchhcCceechHhHHHHHHHHHHHHHHHHhHhheeecCCccCCC
Confidence            999999999999999999999999999999999999999999999886633
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 582
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 1e-81
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 4e-81
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 1e-79
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 9e-67
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 1e-46
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 4e-39
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 8e-42
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-39
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 2e-39
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 8e-32
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-31
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-15
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 1e-24
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 8e-19
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 7e-23
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 6e-04
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 3e-21
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-20
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-20
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 1e-17
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 0.001
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 3e-16
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 3e-08
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 3e-15
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 1e-07
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]

 Score =  251 bits (643), Expect = 1e-81
 Identities = 98/184 (53%), Positives = 131/184 (71%)

Query: 232 GMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIA 291
           GM  D+GYIS  FVT+PE+     E+  +L+   K+S +KD++PLLEK      PLLIIA
Sbjct: 1   GMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSKVSTVKDLLPLLEKVIGAGKPLLIIA 60

Query: 292 EDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIEN 351
           EDV GEAL+TLVVNK+RG     A+KAPGFG+RRKA+LQD+AI+TG +  + ++GL +EN
Sbjct: 61  EDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRKAMLQDMAILTGGQVISEEVGLTLEN 120

Query: 352 TSVEQLGTARKVTIRKDSTTIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAK 411
             +  LG ARKV + KD TTI+  A   D I  R+AQ+++E+  +DS YD EKL ER+AK
Sbjct: 121 ADLSLLGKARKVVVTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDREKLQERLAK 180

Query: 412 LSGG 415
           L+GG
Sbjct: 181 LAGG 184
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query582
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.98
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.96
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.76
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.72
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.71
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.71
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.51
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.27
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.25
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.19
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.31
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.21
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.17
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 97.12
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.31
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 95.61
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=2.6e-48  Score=386.03  Aligned_cols=237  Identities=24%  Similarity=0.411  Sum_probs=221.2

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCceeEec-CCCeEEecChHHHhhhcccCCcchhhHHHHHHHHHhhcccccCCCcc
Q 007985           52 RSRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTT  130 (582)
Q Consensus        52 ~~~~~~~~~i~~la~~v~stlGP~G~~kmi~~-~g~~~iTnDG~tIlk~i~l~hP~~~~ga~Ll~e~a~~~d~~~GDGTT  130 (582)
                      ++++.|++++..|+++|++||||+||+|||.+ +|++++||||+||+|++.++||.    ++++++++++|++++|||||
T Consensus         2 ~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~----a~~~~~~~~~~~~~~GDGtt   77 (243)
T d1a6db1           2 DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPA----AKMMVEVSKTQDSFVGDGTT   77 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHH----HHHHHHHHTCTTCCCTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchH----HHHHHHHHHHHHHHhhcCCc
Confidence            68999999999999999999999999999999 99999999999999999999998    99999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhCCCChHHHHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHhhhcCCchhHHHHHHHHHHHhC
Q 007985          131 TASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVG  210 (582)
Q Consensus       131 t~vvLa~~Ll~~~~~li~~g~~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~~ai~~v~  210 (582)
                      |+++|+++||+++.+++..|+||..|++||+.+++.+++.|++++.++.                               
T Consensus        78 t~~vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~-------------------------------  126 (243)
T d1a6db1          78 TAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIA-------------------------------  126 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECE-------------------------------
T ss_pred             chHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccccc-------------------------------
Confidence            9999999999999999999999999999999999999987755432211                               


Q ss_pred             CCCcEEEecCCCccccceeeeeeEEeeecccCCCccCcccCceeecCeeEEEeccCcCCHHHHHHHHHHHHhcCCCEEEE
Q 007985          211 PDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEKLIVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLII  290 (582)
Q Consensus       211 ~~g~I~i~~G~~~~ds~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~~~~i~~~le~i~~~~~~lvii  290 (582)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCccHHHHHHHHHhhhcCCceEEEeeCCCcchhhhHHHHHHHHHhCCeEeccccCCcccCCCcCCcceeEEEEEecceE
Q 007985          291 AEDVTGEALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAIVTGAEFQAGDLGLLIENTSVEQLGTARKVTIRKDST  370 (582)
Q Consensus       291 ~~~i~~~al~~L~~n~~~g~~~v~aVk~~~~~~~~~~~l~~ia~~tG~~iis~~~~~~~~~~~~~~lG~~~~v~i~~~~~  370 (582)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCChHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHhhHHhHHHHHHHHHhcC
Q 007985          371 TIIADAASKDEIQARIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEG  450 (582)
Q Consensus       371 ~~~~~~~~~~~i~~ri~~l~~~l~~~~~~~~~~~l~~ri~~l~g~~~tI~v~G~t~~~l~E~~~~l~DAl~~~~~al~~g  450 (582)
                                                                                                      
T Consensus       127 --------------------------------------------------------------------------------  126 (243)
T d1a6db1         127 --------------------------------------------------------------------------------  126 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCcchhHHHHHHhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhhcC----CCceeEEccCCc
Q 007985          451 IVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAGVEGEVVVEKVKDS----EWTTGYNAMTDK  526 (582)
Q Consensus       451 vVpGGGa~e~~l~~~L~~~~~~~~~~~~~~~~~~~a~AL~~i~~~L~~NaG~d~~~vi~~l~~~----~~~~G~d~~~g~  526 (582)
                      ++||||++|++++..+..+++++++.+ ++++++|++||+.||++|++|||+|+.+++.+|+..    ++++|+|..+|+
T Consensus       127 ~~~ggGa~e~~~a~~l~~~a~~~~g~~-q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~~~~~~Gvd~~~g~  205 (243)
T d1a6db1         127 YAAGGGATAAEIAFRLRSYAQKIGGRQ-QLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVFTGE  205 (243)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHTCSSH-HHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETTTTE
T ss_pred             cccCCCchhHHHHHHHhhhhhccCCHH-HHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhCCCCceeEECcCCE
Confidence            113799999999999999999888775 699999999999999999999999999999998763    678999999999


Q ss_pred             ccccccCCccccHHHHHHHHHHHHHHHHHHhchhhhhc
Q 007985          527 YENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIVV  564 (582)
Q Consensus       527 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~lL~id~iI~  564 (582)
                      +.||.+.|||||+.||+++|+.|+|+|++|||+|++|.
T Consensus       206 i~d~~~~gV~dp~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         206 IEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             EEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             EeehHhcccEecHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999874
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure