Citrus Sinensis ID: 008004

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
MGENAAALHTAANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSGVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPGQQRKEPVCPSLQFSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTIRRSLWDHSPNDKPKKVASTGTANSADSSTGSRENIAGNKLVKLIDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY
ccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccEEEEEcccEEccccccccEEcccccccccccccccccHHHHHHccccccccccccccEEcccccccccHHHHHHccEEEEcEEEEEEEEEEcccccccHHHHHHccccccHHHHHHHHHHccEEEEEEEEEccEEEEEEEEcccccccHHHHHHHHHHHcccEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHccccccEEEEEccHHHHHHccccHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEEEEccccccHHHHHHHccccccEEEcccccccccccccccccccccccEEEEccccccccEEEEcccccccccccccEEEEEccEEEEEEccccEEEEEEEEcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEccEEEEEEEEEcccc
cccHHHHHHHHHHHHHHHccccccccccEHHHcccccccEEEEEccccccEEEEcccEEEccccccEEcccccEEEEccccccHHHHHHHHHHHccccccccccccccEEcccccHHHHHHHHHHEccccEEEEEEEEEEccccccHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHccccccEEEEEEEEHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccccccccEEEEccccEEEEEcccEEcccccEcEEEEEEEccccccHHEEHHHHHccccHccccccccccccccccccccccccccEEEEEcccccEEEEccEEccccccccccEEEEEccEEEEccccccEEEEEEEEEccccccEEEEcccccccccccccccccEEEcccccccccccccccccHEEEEcccHccccccccccEEEEEccEEEEcccEEEEEEEEEEccc
MGENAAALHTAANSVqalgrgfdvnfdtRLLYCKGVagsrvvevdeehkkdlflydeivvpnvsrdiknsqesigrqssgvctyPQMVEYFNEkanlsggfplgsfnaafsftASKHIDAAATKTlsmdgfyiPLAKvelksplvlqenvkraipaswdppslaSFIENFGTHVITSVTIGGKDVIYVkqhqssplstMEIKTYVQDvgnqrfsdkdsltssgqlklkdkgldpglfnsqgiypqptsapyltgkedVTVIFRRRGGDDLEQNHRQWARtvrsspdviemtfFPITAlldgitgkeHLTRAIGLYLECKPQIEELRYFLEFqiprvwapvqtkipgqqrkepvcpslqfsmmgqklyitqeqisvgrkpvtglRLCLEGAKQNRLSIHLQHLASLPKILFRYWDthvaigapkwqgpeeqdsrwfepvkwknfshvstapienpetfndlsgVYIVTGaqlgvwdfgskNVLYMKLLYSrlpgctirrslwdhspndkpkkvastgtansadsstgsreniagnklVKLIdmsemtkgpqdppghwlvtggklgvekGKIVLRVKYSLLNY
MGENAAALHTAANSVQALGRGFDVNFDTRLLYCKGVagsrvvevdeehkkdlflydeivvpnVSRDIknsqesigrqssgvCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQLKLKDKGLDPGLFNSQGiypqptsapyltgKEDVTVIFRRrggddleqnhrqwartvrsspdvieMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWApvqtkipgqqrkEPVCPSLQFSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTIRRslwdhspndkpkkvastgtansadsstgsreniagnKLVKLIDMSEmtkgpqdppgHWLVtggklgvekgkiVLRVKYSLLNY
MGENAAALHTAANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSGVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQlklkdkgldpglFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPGQQRKEPVCPSLQFSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTIRRSLWDHSPNDKPKKVASTGTANSADSSTGSRENIAGNKLVKLIDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY
************NSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSR**************GVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQH*********IKTYV************************************IY*****APYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPG****EPVCPSLQFSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTIRRSLW*****************************************************HWLVTGGKLGVEKGKIVLRVKYSLL**
***********ANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKN******RQSSGVCTYPQMVE******************AAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVK****************QDVGNQRFS**********************************************************NHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVW*********************FSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAI*********EQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTI************************************GNKLVKLIDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY
*********TAANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKN*********SGVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTK********PVCPSLQFSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTIRRSLWDHSPN*********************RENIAGNKLVKLIDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY
*****AALH*AANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSGVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSD***************************************KEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPGQQRKEPVCPSLQFSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTIRRSLWDHSPN*******STGTANS*DSSTGSRENIAGNKLVKLIDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGENAAALHTAANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSGVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPGQQRKEPVCPSLQFSMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFNDLSGVYIVTGAQLGVWDFGSKNVLYMKLLYSRLPGCTIRRSLWDHSPNDKPKKVASTGTANSADSSTGSRENIAGNKLVKLIDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query581 2.2.26 [Sep-21-2011]
Q9C7N2561 MACPF domain-containing p yes no 0.929 0.962 0.597 0.0
Q9STW5606 MACPF domain-containing p no no 0.960 0.920 0.419 1e-123
Q9SGN6612 MACPF domain-containing p no no 0.967 0.918 0.402 1e-108
Q8L612627 MACPF domain-containing p no no 0.960 0.889 0.351 1e-100
>sp|Q9C7N2|CAD1_ARATH MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/574 (59%), Positives = 430/574 (74%), Gaps = 34/574 (5%)

Query: 10  TAANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIKN 69
           T  N++QALGRGFDV  D RLLYCKG  GSR+V ++E   +DL L    ++PNV  DI  
Sbjct: 20  TLRNAIQALGRGFDVTSDVRLLYCKGAPGSRLVRIEEGQNRDLELSHGFLLPNVPADIDC 79

Query: 70  SQESIGRQSSGVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDAAATKTLSMD 129
           S+ + G Q   VC++ +M E FN ++ + G  PLG FNA F++T S  +DAA+TK+L++ 
Sbjct: 80  SRGNSGTQRISVCSFHEMAEEFNVRSGVKGNIPLGCFNAMFNYTGSWQVDAASTKSLALV 139

Query: 130 GFYIPLAKVEL-KSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTIGGKDVIYV 188
           G++IPL  V+L K  LVL   ++RA+P+SWDP SLASFIEN+GTH++TSVTIGG+DV+Y+
Sbjct: 140 GYFIPLYDVKLAKLTLVLHNEIRRAVPSSWDPASLASFIENYGTHIVTSVTIGGRDVVYI 199

Query: 189 KQHQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQLKLKDKGLDPGLFNSQGIYPQPTS 248
           +QHQSSPL   EI+ YV D+   RF + +S + +G LK KDK                  
Sbjct: 200 RQHQSSPLPVSEIENYVNDMIKHRFHEAESQSITGPLKYKDK------------------ 241

Query: 249 APYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITGKEHL 308
                   D+TVIFRRRGGDDLEQ+H +WA TV ++PD+I MTF PI +LL+G+ G  HL
Sbjct: 242 --------DITVIFRRRGGDDLEQSHARWAETVPAAPDIINMTFTPIVSLLEGVPGLRHL 293

Query: 309 TRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPGQQRKEPVCPSLQFSMMGQKLYI 368
           TRAI LYLE KP IE+L+YFL++QI R WAP Q+ +   QRKEPVC SLQFS+MG KL+I
Sbjct: 294 TRAIELYLEYKPPIEDLQYFLDYQIARAWAPEQSNL---QRKEPVCSSLQFSLMGPKLFI 350

Query: 369 TQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKWQGPE 428
           + +Q++VGRKPVTGLRL LEG+KQNRLSIHLQHL SLPKIL  +WD+HV IGAPKWQGPE
Sbjct: 351 SADQVTVGRKPVTGLRLSLEGSKQNRLSIHLQHLVSLPKILQPHWDSHVPIGAPKWQGPE 410

Query: 429 EQDSRWFEPVKWKNFSHVSTAPIENPET-FNDLSGVYIVTGAQLGVWDFGSKNVLYMKLL 487
           EQDSRWFEP+KWKNFSHVST+PIE+ ET   DLSGV+IVTGAQLGVWDFGSKNVL++KLL
Sbjct: 411 EQDSRWFEPIKWKNFSHVSTSPIEHTETHIGDLSGVHIVTGAQLGVWDFGSKNVLHLKLL 470

Query: 488 YSRLPGCTIRRSLWDHSPNDKPKKVASTGTANSADSSTGSRENIAGNKLVKLIDMSEMTK 547
           +S++PGCTIRRS+WDH+P     ++   G + S+ +   S ++    KL K++D SEM K
Sbjct: 471 FSKVPGCTIRRSVWDHTPVASSGRLEPGGPSTSSSTEEVSGQS---GKLAKIVDSSEMLK 527

Query: 548 GPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY 581
           GPQD PGHWLVTG KLGVEKGKIVLRVKYSLLNY
Sbjct: 528 GPQDLPGHWLVTGAKLGVEKGKIVLRVKYSLLNY 561
Negatively controls the salicylic acid (SA)-mediated pathway of programmed cell death in plant immunity.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9STW5|MACP2_ARATH MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana GN=At4g24290 PE=2 SV=1 Back     alignment and function description
>sp|Q9SGN6|NSL1_ARATH MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana GN=NSL1 PE=1 SV=1 Back     alignment and function description
>sp|Q8L612|MACP1_ARATH MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana GN=At1g14780 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
297735552623 unnamed protein product [Vitis vinifera] 0.998 0.930 0.839 0.0
224087849597 predicted protein [Populus trichocarpa] 1.0 0.973 0.800 0.0
225439673615 PREDICTED: uncharacterized protein LOC10 0.953 0.900 0.801 0.0
224139348560 predicted protein [Populus trichocarpa] 0.960 0.996 0.802 0.0
255584257563 conserved hypothetical protein [Ricinus 0.946 0.976 0.779 0.0
356506458555 PREDICTED: uncharacterized protein LOC10 0.951 0.996 0.751 0.0
356496305555 PREDICTED: uncharacterized protein LOC10 0.951 0.996 0.749 0.0
449449861560 PREDICTED: MACPF domain-containing prote 0.955 0.991 0.737 0.0
449523826560 PREDICTED: MACPF domain-containing prote 0.955 0.991 0.737 0.0
356566790547 PREDICTED: uncharacterized protein LOC10 0.934 0.992 0.724 0.0
>gi|297735552|emb|CBI18046.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/584 (83%), Positives = 533/584 (91%), Gaps = 4/584 (0%)

Query: 1   MGENAAALHTAANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVV 60
           MGE A ALHTA NSVQALGRGFDVNFDTRLLYCKG AGSRVVEVDEEH KDL LYD ++V
Sbjct: 41  MGEKAVALHTALNSVQALGRGFDVNFDTRLLYCKGGAGSRVVEVDEEHTKDLCLYDNLLV 100

Query: 61  PNVSRDIKNSQESIGRQSSGVCTYPQMVEYFNEKANLSGGFPLGSFNAAFSFTASKHIDA 120
           PNVSRDIKNSQE+ GR+ SGV ++P+MVEYFN+KANLSG  PLGSFNAAFSFT  KH+D+
Sbjct: 101 PNVSRDIKNSQETKGREISGVLSFPEMVEYFNKKANLSGNVPLGSFNAAFSFTGLKHMDS 160

Query: 121 AATKTLSMDGFYIPLAKVEL-KSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVT 179
           A TK+L MD F+I LAKV+L  SPLVLQENVKRA+P+ WDPPSLASFIENFGTHVITSVT
Sbjct: 161 ATTKSLYMDAFFISLAKVQLVNSPLVLQENVKRAVPSCWDPPSLASFIENFGTHVITSVT 220

Query: 180 IGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSDKDSLTSSGQLKLKDKGLDPGLFNS 239
           IGGKDVIYVKQHQSSPLSTMEIK YVQD+GNQRFSD +S  SSG +KLKDK +DP LFNS
Sbjct: 221 IGGKDVIYVKQHQSSPLSTMEIKNYVQDIGNQRFSDTESNASSGPMKLKDKSVDPCLFNS 280

Query: 240 QGIYPQPTSAPYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALL 299
           QGIYPQPTSAP LTGKEDVTVIFRRRGGDDLEQ+H QWA +VRSSPDVIEMTFFPITALL
Sbjct: 281 QGIYPQPTSAPILTGKEDVTVIFRRRGGDDLEQSHTQWATSVRSSPDVIEMTFFPITALL 340

Query: 300 DGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPGQQRKEPVCPSLQF 359
           +G+TGKEHL  AIGLYLE KPQ+EELRYFLEFQIPR+WAP+Q K+PG QRKEPVCPSLQF
Sbjct: 341 EGVTGKEHLAHAIGLYLEYKPQLEELRYFLEFQIPRIWAPIQDKLPGHQRKEPVCPSLQF 400

Query: 360 SMMGQKLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAI 419
           SMMGQKLY++QEQ+SVGRKPVTGLRLCLEG+KQNRLSIH+QHLASLPKIL  YWDTHVAI
Sbjct: 401 SMMGQKLYVSQEQVSVGRKPVTGLRLCLEGSKQNRLSIHIQHLASLPKILQPYWDTHVAI 460

Query: 420 GAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETF-NDLSGVYIVTGAQLGVWDFGS 478
           GAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETF  D+S ++IVTGAQLGVWDFGS
Sbjct: 461 GAPKWQGPEEQDSRWFEPVKWKNFSHVSTAPIENPETFVGDISAIFIVTGAQLGVWDFGS 520

Query: 479 KNVLYMKLLYSRLPGCTIRRSLWDHSPNDKPKKVASTGT-ANSADSSTGSRENIAGNKLV 537
           +NVLY+KLLYSRLPGCTIRRSLWDH+PNDK KK  +TG+  N+ DSS+GSREN  GNKL 
Sbjct: 521 RNVLYLKLLYSRLPGCTIRRSLWDHAPNDKLKKGITTGSIVNNGDSSSGSREN-TGNKLA 579

Query: 538 KLIDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY 581
           K +DMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY
Sbjct: 580 KFVDMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224087849|ref|XP_002308249.1| predicted protein [Populus trichocarpa] gi|222854225|gb|EEE91772.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439673|ref|XP_002267193.1| PREDICTED: uncharacterized protein LOC100260206 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224139348|ref|XP_002323068.1| predicted protein [Populus trichocarpa] gi|222867698|gb|EEF04829.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255584257|ref|XP_002532866.1| conserved hypothetical protein [Ricinus communis] gi|223527378|gb|EEF29520.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356506458|ref|XP_003521999.1| PREDICTED: uncharacterized protein LOC100780783 [Glycine max] Back     alignment and taxonomy information
>gi|356496305|ref|XP_003517009.1| PREDICTED: uncharacterized protein LOC100817248 [Glycine max] Back     alignment and taxonomy information
>gi|449449861|ref|XP_004142683.1| PREDICTED: MACPF domain-containing protein CAD1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449523826|ref|XP_004168924.1| PREDICTED: MACPF domain-containing protein CAD1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356566790|ref|XP_003551610.1| PREDICTED: uncharacterized protein LOC100791420 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
TAIR|locus:2013673561 CAD1 "AT1G29690" [Arabidopsis 0.564 0.584 0.689 2.3e-185
TAIR|locus:2135912606 AT4G24290 "AT4G24290" [Arabido 0.958 0.919 0.427 1.2e-113
TAIR|locus:2032532612 NSL1 "AT1G28380" [Arabidopsis 0.965 0.916 0.405 6.2e-101
TAIR|locus:2006807627 AT1G14780 "AT1G14780" [Arabido 0.922 0.854 0.344 9.8e-97
TAIR|locus:2013673 CAD1 "AT1G29690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1229 (437.7 bits), Expect = 2.3e-185, Sum P(2) = 2.3e-185
 Identities = 235/341 (68%), Positives = 277/341 (81%)

Query:   245 QPTSAPYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIEMTFFPITALLDGITG 304
             Q  + P     +D+TVIFRRRGGDDLEQ+H +WA TV ++PD+I MTF PI +LL+G+ G
Sbjct:   230 QSITGPLKYKDKDITVIFRRRGGDDLEQSHARWAETVPAAPDIINMTFTPIVSLLEGVPG 289

Query:   305 KEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIPGQQRKEPVCPSLQFSMMGQ 364
               HLTRAI LYLE KP IE+L+YFL++QI R WAP Q+ +   QRKEPVC SLQFS+MG 
Sbjct:   290 LRHLTRAIELYLEYKPPIEDLQYFLDYQIARAWAPEQSNL---QRKEPVCSSLQFSLMGP 346

Query:   365 KLYITQEQISVGRKPVTGLRLCLEGAKQNRLSIHLQHLASLPKILFRYWDTHVAIGAPKW 424
             KL+I+ +Q++VGRKPVTGLRL LEG+KQNRLSIHLQHL SLPKIL  +WD+HV IGAPKW
Sbjct:   347 KLFISADQVTVGRKPVTGLRLSLEGSKQNRLSIHLQHLVSLPKILQPHWDSHVPIGAPKW 406

Query:   425 QGPEEQDSRWFEPVKWKNFSHVSTAPIENPET-FNDLSGVYIVTGAQLGVWDFGSKNVLY 483
             QGPEEQDSRWFEP+KWKNFSHVST+PIE+ ET   DLSGV+IVTGAQLGVWDFGSKNVL+
Sbjct:   407 QGPEEQDSRWFEPIKWKNFSHVSTSPIEHTETHIGDLSGVHIVTGAQLGVWDFGSKNVLH 466

Query:   484 MKLLYSRLPGCTIRRSLWDHSPNDKPKKVASTGTANSADSSTGSR-ENIAGN--KLVKLI 540
             +KLL+S++PGCTIRRS+WDH+P      VAS+G       ST S  E ++G   KL K++
Sbjct:   467 LKLLFSKVPGCTIRRSVWDHTP------VASSGRLEPGGPSTSSSTEEVSGQSGKLAKIV 520

Query:   541 DMSEMTKGPQDPPGHWLVTGGKLGVEKGKIVLRVKYSLLNY 581
             D SEM KGPQD PGHWLVTG KLGVEKGKIVLRVKYSLLNY
Sbjct:   521 DSSEMLKGPQDLPGHWLVTGAKLGVEKGKIVLRVKYSLLNY 561
GO:0006955 "immune response" evidence=IMP
GO:0008219 "cell death" evidence=IMP
GO:0009626 "plant-type hypersensitive response" evidence=IMP
GO:0010337 "regulation of salicylic acid metabolic process" evidence=IMP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0052542 "defense response by callose deposition" evidence=RCA
TAIR|locus:2135912 AT4G24290 "AT4G24290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032532 NSL1 "AT1G28380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006807 AT1G14780 "AT1G14780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C7N2CAD1_ARATHNo assigned EC number0.59750.92940.9625yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00060942
hypothetical protein (597 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
pfam01823209 pfam01823, MACPF, MAC/Perforin domain 8e-27
smart00457195 smart00457, MACPF, membrane-attack complex / perfo 9e-14
PTZ00482844 PTZ00482, PTZ00482, membrane-attack complex/perfor 0.001
>gnl|CDD|216723 pfam01823, MACPF, MAC/Perforin domain Back     alignment and domain information 
 Score =  107 bits (270), Expect = 8e-27
 Identities = 49/227 (21%), Positives = 84/227 (37%), Gaps = 33/227 (14%)

Query: 104 GSFNAAFSFTASKHIDAAATKTLSMDGFYIPLAKVELKSPLVLQ-----ENVKRAIPASW 158
           GSF+A+  F +  +       +  +   Y  L +  LK P  L+          A+P+++
Sbjct: 1   GSFSASSEFKSLSNKTKQKKSSFIISKSYCSLYQFSLKPPNDLELSDEFLKALNALPSTY 60

Query: 159 DPPSLA---SFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFSD 215
           D  +      F E +GTH ITSVT+GGK V  +K   S           V+ +       
Sbjct: 61  DSATKDSYIQFFEKYGTHYITSVTLGGKIVYVLKLDSS----------QVKKLKLTGS-- 108

Query: 216 KDSLTSSGQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL----- 270
            D +++                 S             +     +      GG        
Sbjct: 109 -DCVSAEAGASFGKVSSKGCKSTSSS-----QKEKKSSSSSIESSKTDVIGGTPEFNAGS 162

Query: 271 -EQNHRQWARTVRSSPDVIEMTFFPITALL-DGITGKEHLTRAIGLY 315
             + + +WA +V+ +P  I+    PI+ LL +    KE+L +A+  Y
Sbjct: 163 DPKTYSKWAESVKDNPMPIKYKLVPISELLKEVPCKKENLKKALEEY 209

The membrane-attack complex (MAC) of the complement system forms transmembrane channels. These channels disrupt the phospholipid bilayer of target cells, leading to cell lysis and death. A number of proteins participate in the assembly of the MAC. Freshly activated C5b binds to C6 to form a C5b-6 complex, then to C7 forming the C5b-7 complex. The C5b-7 complex binds to C8, which is composed of three chains (alpha, beta, and gamma), thus forming the C5b-8 complex. C5b-8 subsequently binds to C9 and acts as a catalyst in the polymerisation of C9. Active MAC has a subunit composition of C5b-C6-C7-C8-C9{n}. Perforin is a protein found in cytolytic T-cell and killer cells. In the presence of calcium, perforin polymerises into transmembrane tubules and is capable of lysing, non-specifically, a variety of target cells. There are a number of regions of similarity in the sequences of complement components C6, C7, C8-alpha, C8-beta, C9 and perforin. The X-ray crystal structure of a MACPF domain reveals that it shares a common fold with bacterial cholesterol dependent cytolysins (pfam01289) such as perfringolysin O. Three key pieces of evidence suggests that MACPF domains and CDCs are homologous: Functional similarity (pore formation), conservation of three glycine residues at a hinge in both families and conservation of a complex core fold. Length = 209
>gnl|CDD|214671 smart00457, MACPF, membrane-attack complex / perforin Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 581
PTZ00482844 membrane-attack complex/perforin (MACPF) Superfami 99.96
smart00457194 MACPF membrane-attack complex / perforin. 99.94
PF01823212 MACPF: MAC/Perforin domain; InterPro: IPR020864 Th 99.92
PTZ00481524 Membrane attack complex/ Perforin (MACPF) Superfam 99.8
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information 
Probab=99.96  E-value=3.3e-28  Score=276.52  Aligned_cols=325  Identities=19%  Similarity=0.219  Sum_probs=208.8

Q ss_pred             HHHhhhcccceeecccccccccC--CCCCC--ceEEec-------CccceeeeecCCeeecCCCCcccccccccceeecc
Q 008004           12 ANSVQALGRGFDVNFDTRLLYCK--GVAGS--RVVEVD-------EEHKKDLFLYDEIVVPNVSRDIKNSQESIGRQSSG   80 (581)
Q Consensus        12 ~~ai~~lG~GyDlt~D~rl~~ck--~~~gs--rli~id-------~~~~r~l~~P~g~~v~~v~~~ikc~kger~r~~Sd   80 (581)
                      .+++++||.||||..---|..--  -.+|-  .+|++.       ..+.+.+.+|.|++|+   +.+.|.+++..+..++
T Consensus       243 ~~gleYLG~GYDIi~GNPlGd~~~~vDPGYR~pII~~~~~~n~~~~~nd~~~~~P~G~wIR---~e~sC~rSe~i~eI~s  319 (844)
T PTZ00482        243 FPGLYFLGIGYDSLFGNPLGEPDSLTDPGYRGQIILMNWAQSNDGVANDLATLQPLNGWIR---KENACSRSESIKECSS  319 (844)
T ss_pred             cccceecccceeceecCCCCCccccCCCcccchhhcccccccccccCccccccCCCCceec---cccceeccccceeecc
Confidence            68999999999999421111000  00111  222221       0122445688898887   5668999999987666


Q ss_pred             ccchhhHHHHhhcceeeecCcC-CceEEEEEeec-cchhhccccceeeEEeeeEEEEEEEEE--cCCCCCchhHHhh---
Q 008004           81 VCTYPQMVEYFNEKANLSGGFP-LGSFNAAFSFT-ASKHIDAAATKTLSMDGFYIPLAKVEL--KSPLVLQENVKRA---  153 (581)
Q Consensus        81 v~sf~qmse~fn~~~slsg~ip-~g~fna~f~~s-~S~~~~~astKsl~~~~~~i~ly~f~L--~~~l~Ls~eF~ka---  153 (581)
                      +   ++....+..+++++|+++ .+.|+|+.+|. ..........|.|..+. +|..|.+.|  ..++.|+++|+++   
T Consensus       320 i---sdy~ksLS~dasvsgs~~g~~sFSAS~gYk~f~~~lskk~~k~fi~ks-~C~~Y~~~L~~~~~~~Lt~~F~~aL~~  395 (844)
T PTZ00482        320 L---SDYTKNLSAEASVSGSYMGINSFSASTGYKKFLQEVSKRTTKTYLLKS-NCVKYTAGLPPYFKWNQTTAFKNAVNG  395 (844)
T ss_pred             H---HHhhhheeeeeecccccccceeeecccchHHHHHHHhhcceeEEEEee-eEEEEEEeccccCCCccCHHHHHHHHh
Confidence            4   445678888888888754 46788888774 33333345566687777 999999999  4478899999984   


Q ss_pred             CCCCCC------------------------hhHHHHHHhccccEEEEEEEEccEEEEEEEeeecCCCCHHHHHHHHhhcc
Q 008004          154 IPASWD------------------------PPSLASFIENFGTHVITSVTIGGKDVIYVKQHQSSPLSTMEIKTYVQDVG  209 (581)
Q Consensus       154 LP~~yd------------------------~~~Y~~FIe~YGTHyitsvtLGGkdvi~Vkq~~sS~lt~~evk~cLs~~a  209 (581)
                      ||..|+                        ...|++||++|||||+++++|||+-. ...+.+.+. .+...+.|+++.+
T Consensus       396 LP~~f~~~~~~~~Cs~~~Y~~n~~~e~C~~i~~W~~f~~~yGTH~~~~~~lGG~I~-~~~~le~s~-~e~lkk~~lsVkA  473 (844)
T PTZ00482        396 LPPVFDGLEAESECSSDVYEQDKTAEECENVPIWISFFEQYGTHIIMELQLGGKIT-KQVTVKNSS-VEQMKKDGVSVKA  473 (844)
T ss_pred             cchhhhcccccccCCHHHhhhcccccccccHHHHHHHHHHcCceEEEEEEeccEEE-EEEEecchh-HHHHHhcCcceee
Confidence            699887                        35699999999999999999999932 122222222 1334677777666


Q ss_pred             ceeEe--cccccccccccccccCCCCCCcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc-----hhhHHHHHHhcc
Q 008004          210 NQRFS--DKDSLTSSGQLKLKDKGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL-----EQNHRQWARTVR  282 (581)
Q Consensus       210 ~~~f~--~~~~~~s~~~~~~~ek~k~~~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~-----~~~~~~Wl~SV~  282 (581)
                      .+...  .++...+.......+.   ..++.+            ..+...    ..++||.+.     +..|.+|++||+
T Consensus       474 ~~k~~~g~~S~ggs~~~ss~~es---kss~~~------------~~~sk~----t~ViGG~~~~d~~d~~~~~~W~~SV~  534 (844)
T PTZ00482        474 QVKAQFGFASAGGSTNVSSDNSS---ASNEYS------------YNMSEQ----LLVIGGNPIKDVTKEENLAEWSKTVS  534 (844)
T ss_pred             eehhccccceecccccccchhhh---hhhhhh------------hccceE----EEEECCCCCCCCCChHHHHHHHHHhh
Confidence            54321  1111111100000000   000111            001112    224788763     578999999999


Q ss_pred             cCCceeeeeeeehhhhcCCchhHHHHHHHHHHHHH-cCCCHHHH--------HHHhhhccccceeeccCCCCCCcccCCC
Q 008004          283 SSPDVIEMTFFPITALLDGITGKEHLTRAIGLYLE-CKPQIEEL--------RYFLEFQIPRVWAPVQTKIPGQQRKEPV  353 (581)
Q Consensus       283 ~~P~vI~~kL~PI~eLL~~~p~k~~Lk~AI~~YL~-yKP~ieeL--------~~flefq~p~~waPc~n~lpg~~r~~~~  353 (581)
                      .+|+||+++|.||++||+..+++++|++||+.|++ +.-.+++.        ...|+.     ...+..+  |.......
T Consensus       535 ~nP~pI~~~l~PI~~Ll~~~~~ke~y~kAI~~Yi~l~G~~p~~~~~~~~~~I~~~l~~-----~t~i~~~--g~~~i~a~  607 (844)
T PTZ00482        535 TLPMPINIELLPISTLFPSDDLKESYEKAVIYYSRLYGLSPHDTMQKDEKDIVKILTA-----ATTVTWS--GAPPISAE  607 (844)
T ss_pred             cCCcceEEEeEEHHHhcCChhhHHHHHHHHHHHHHHhCCChhHhhccccccHHHHHhh-----CcEEeec--CCCceeEE
Confidence            99999999999999999998889999999999999 44444442        122221     1112211  33456678


Q ss_pred             CCceeEEeeccEEEEeee
Q 008004          354 CPSLQFSMMGQKLYITQE  371 (581)
Q Consensus       354 ~pslqfs~mgpklyv~t~  371 (581)
                      ||.=+-.+||.-|-++..
T Consensus       608 CP~g~vIlfGFiL~~~~~  625 (844)
T PTZ00482        608 CPHGQVVLFGFAMRQNFW  625 (844)
T ss_pred             CCCCCEEEEEEEEEeecc
Confidence            999999999999988753

>smart00457 MACPF membrane-attack complex / perforin Back     alignment and domain information
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants Back     alignment and domain information
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
2qp2_A511 Unknown protein; toxin, unknown function; 2.00A {P 1e-34
2rd7_A367 Complement component C8 alpha chain; membrane atta 7e-26
3nsj_A540 Perforin-1; pore forming protein, immune system; H 1e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-11
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 1e-11
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 4e-11
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 1e-10
3kk7_A541 Putative cell invasion protein with MAC/perforin; 4e-09
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp} Length = 511 Back     alignment and structure
 Score =  136 bits (342), Expect = 1e-34
 Identities = 53/411 (12%), Positives = 115/411 (27%), Gaps = 50/411 (12%)

Query: 10  TAANSVQALGRGFDVNFDTRLLYCKGVAGSRVVEVDEEHKKDLFLYDEIVVPNVSRDIK- 68
           T     + +G  +DV       YC    GS +  + +E K +    +   V  + + +K 
Sbjct: 37  TVIAGAEMIGTSYDVFGK----YCNV--GSCMNSLFDERKINASEDNFKKVTILGKTLKV 90

Query: 69  ------NSQESIGRQSSGVCTYPQMVEYFNEKANLSGGFPL--GSFNAAFSFTASKHIDA 120
                  S   +   ++   +        + K+ + G +     S    F   +    + 
Sbjct: 91  PYYIDCYSVGDLKYTNASGESIESYQSNISSKSRIKGNYLFFSASLKVDFDTDSLTDFEN 150

Query: 121 AATKTLSMDGFYIPLAKVELKSPLVLQENVKRAIPASWDPPSLASFIENFGTHVITSVTI 180
           A ++       YI  +  E      L+E+VK A+  +     +      +G+H ++ V +
Sbjct: 151 AFSRIQYTYDLYILKSSAEALKEF-LKESVKTALDKADTEEDMNDLFNTWGSHFLSGVVM 209

Query: 181 GGKDVIYVKQHQSSPLSTMEIKTYVQDVGNQRFS-----------DKDSLTSSGQLKLKD 229
           GG        ++ +   T                           D     S+  +K   
Sbjct: 210 GGCAQYSSSTNKYTSNLTNSFDVVAAASFAGFIGLSARTGNSFMEDIKKFRSASNIKTHA 269

Query: 230 KGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDLEQNHRQWARTVRSSPDVIE 289
            G D   F+  G                             ++    W  +V ++P+++ 
Sbjct: 270 IGGDLSRFDPFGGATSADQ-------------PSAEEIAAAKKAFEDWKASVPNAPELVN 316

Query: 290 ----MTFFPITALLDGITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPRVWAPVQTKIP 345
                    I  L    T K  L +          +  + R   ++    +     T  P
Sbjct: 317 FADSNPLTGIWELCSDRTQKAKLKKHFETVWA-PAESAKRRVHADYIDEIIIGINNTNTP 375

Query: 346 GQQRKEPVCPSLQFSMMGQKLYITQEQISV-----GRKPVTGLRLCLEGAK 391
            +          +       + +   +         +  +T L+      K
Sbjct: 376 PEGYIGLKSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITELKFITVRDK 426
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A Length = 367 Back     alignment and structure
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554 Back     alignment and structure
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 537 Back     alignment and structure
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482} Length = 541 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query581
3nsj_A540 Perforin-1; pore forming protein, immune system; H 100.0
3ojy_B537 Complement component C8 beta chain; macpf, lipocal 100.0
3ojy_A554 Complement component C8 alpha chain; macpf, lipoca 100.0
3t5o_A 913 Complement component C6; macpf, MAC, membrane atta 100.0
2rd7_A367 Complement component C8 alpha chain; membrane atta 100.0
2qp2_A511 Unknown protein; toxin, unknown function; 2.00A {P 100.0
3kk7_A541 Putative cell invasion protein with MAC/perforin; 99.46
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=4.9e-40  Score=363.40  Aligned_cols=312  Identities=15%  Similarity=0.191  Sum_probs=221.2

Q ss_pred             HHHhhhcccceeecc-cccc------cccCCCCCCce--EEecCccce-eeeecCCeeecCCCCc-ccccccccceeecc
Q 008004           12 ANSVQALGRGFDVNF-DTRL------LYCKGVAGSRV--VEVDEEHKK-DLFLYDEIVVPNVSRD-IKNSQESIGRQSSG   80 (581)
Q Consensus        12 ~~ai~~lG~GyDlt~-D~rl------~~ck~~~gsrl--i~id~~~~r-~l~~P~g~~v~~v~~~-ikc~kger~r~~Sd   80 (581)
                      .++++.+|.||||+. +.|-      +|..+. ++.+  +. +.+... -+-+|..+..  .... ++|+...+..++++
T Consensus        17 ~Pg~~l~G~G~nilt~e~~g~~VlD~~~~~~~-~G~C~~c~-~~~~~~~~~RlP~nv~~--~~~~~~~~~~~~s~e~y~s   92 (540)
T 3nsj_A           17 VPGVWMAGEGMDVTTLRRSGSFPVNTQRFLRP-DRTCTLCK-NSLMRDATQRLPVAITH--WRPHSSHCQRNVAAAKVHS   92 (540)
T ss_dssp             CTTGGGTTCEEETTTTEECSCCSBCCCCCSCT-TSCEEEEE-ETTTTTEEEEECTTEEE--EEECCSCCCCCCEEEEECS
T ss_pred             CCChHHhcCCEEEecCcccCCEeEechhccCC-CCeeeEec-ccccCCceeeccceeee--EEEEEeeeeeeechhhccc
Confidence            467999999999986 3322      355421 1233  22 232222 2568987532  2234 78999888888888


Q ss_pred             ccchhh-HHHHhhcceeeecCcCC---ceEEEEEeeccchhhccccce------eeEEeeeEEEEEEEEEcCCCCCchhH
Q 008004           81 VCTYPQ-MVEYFNEKANLSGGFPL---GSFNAAFSFTASKHIDAAATK------TLSMDGFYIPLAKVELKSPLVLQENV  150 (581)
Q Consensus        81 v~sf~q-mse~fn~~~slsg~ip~---g~fna~f~~s~S~~~~~astK------sl~~~~~~i~ly~f~L~~~l~Ls~eF  150 (581)
                      ..++-+ +......+++++.+|+.   ..+++++++++|....++.+|      .|......|++|+|+|+.+++|+++|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~s~s~~~~~a~~~s~~~~~~F~~~~~~~~~~~~~~~~~~~L~~~F  172 (540)
T 3nsj_A           93 TEGVAREAAANINNDWRVGLDVNPRPEANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQKPPLHLDF  172 (540)
T ss_dssp             HHHHHHHHHTTBCSCTTTTSCCC-CCSTTTTCBCTTTTSHHHHHHHHHHHHSCEEEEEEEEEEEEEEEEECSSCCBCHHH
T ss_pred             HHHHHHHHhhhcccccceeeecccccccceeEEeecccchhhHHHHHhhhccceEEEEEEEEEEEEEEEeCCCCCCCHHH
Confidence            666522 22222233444555543   123355555666665554433      27777789999999996689999999


Q ss_pred             Hh---hCCCCCCh---hHHHHHHhccccEEEEEEEEccE-EEE-EEEe--eecCCCCHHHHHHHHhhccceeEec-cccc
Q 008004          151 KR---AIPASWDP---PSLASFIENFGTHVITSVTIGGK-DVI-YVKQ--HQSSPLSTMEIKTYVQDVGNQRFSD-KDSL  219 (581)
Q Consensus       151 ~k---aLP~~yd~---~~Y~~FIe~YGTHyitsvtLGGk-dvi-~Vkq--~~sS~lt~~evk~cLs~~a~~~f~~-~~~~  219 (581)
                      ++   +||..||+   ++|++||++||||||++++|||+ +++ ++++  ++.+++|.+|+++||+.++++++.. +.+.
T Consensus       173 ~~~l~~LP~~~~~~~~~~Y~~fi~~yGTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~~  252 (540)
T 3nsj_A          173 KKALRALPRNFNSSTEHAYHELISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVS  252 (540)
T ss_dssp             HHHHHTSCSSCCSSTHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHhcccccCcccHHHHHHHHHhcCcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEeec
Confidence            98   58999999   99999999999999999999999 554 5555  4678999999999999877655531 1222


Q ss_pred             cccccccccc---CCCCCCcccCCccCCCCCCCCcccCCcCeEEEEEeecCCcc------------hhhHHHHHHhcccC
Q 008004          220 TSSGQLKLKD---KGLDPGLFNSQGIYPQPTSAPYLTGKEDVTVIFRRRGGDDL------------EQNHRQWARTVRSS  284 (581)
Q Consensus       220 ~s~~~~~~~e---k~k~~~sf~~q~~~~r~~~~s~~s~~ed~~VI~~vrGG~~~------------~~~~~~Wl~SV~~~  284 (581)
                      .+  ...|.+   +.+...              +...++++  ++..++||.+.            ++.|++|++||+++
T Consensus       253 ~~--~~~C~~~~~~~~~~~--------------~~~~~~~~--~~~~V~GG~~~~~~~L~~~~~~~p~~~~~W~~Sv~~~  314 (540)
T 3nsj_A          253 SE--YKACEEKKKQHKMAT--------------SFHQTYRE--RHVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSN  314 (540)
T ss_dssp             HH--HHHHHHHHHHTTCSS--------------CHHHHCCC--EEEEEESSCGGGCCCSSSCSSCCHHHHHHHHHHTTTS
T ss_pred             cc--ccccccccccccccC--------------Ccccccce--EEEEEeCCCccchhhhhcccCCCHHHHHHHHHHHhhC
Confidence            11  222332   111112              22234456  67788999852            46899999999999


Q ss_pred             CceeeeeeeehhhhcCC-chhHHHHHHHHHHHHHcCCCHHHHHHHhhhcccc-cee-eccCCCC--CCcccCCCCCcee
Q 008004          285 PDVIEMTFFPITALLDG-ITGKEHLTRAIGLYLECKPQIEELRYFLEFQIPR-VWA-PVQTKIP--GQQRKEPVCPSLQ  358 (581)
Q Consensus       285 P~vI~~kL~PI~eLL~~-~p~k~~Lk~AI~~YL~yKP~ieeL~~flefq~p~-~wa-Pc~n~lp--g~~r~~~~~pslq  358 (581)
                      |+||+|+|.|||+||+. .++|+|||+||++||.             +++|| +|+ ||+||.+  ..+.|.|+||.-.
T Consensus       315 P~~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~-------------e~~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~  380 (540)
T 3nsj_A          315 PGLVDYSLEPLHTLLEEQNPKREALRQAISHYIM-------------SRARWQNCSRPCRSGQHKSSHDSCQCECQDSK  380 (540)
T ss_dssp             CEEEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHH-------------HTCBCCCTTSCCBTTEEECSSCTTCEEESCTT
T ss_pred             CceEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHH-------------hcCchhhhcccccCCCccCCCCceEeeCCCCC
Confidence            99999999999999984 7889999999999999             89999 997 9999965  5588999998753
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Back     alignment and structure
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A Back     alignment and structure
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp} Back     alignment and structure
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00