Citrus Sinensis ID: 008008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MGSKCKSSRAYDLMMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDYYKNLSPTYF
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccccccccccccccccEEEEcccccccccccccccEEEEcccccccccccEEcccccccccccccccEEEEEccccccEEEEcccccccccEEEEEEEEccccccccccccEEEEEccEEEEEEEEccccccEEEEEEEEEccccEEEEEEEccccccEEEEEEcEEccccccccccccEEEEEEEEcccccccEEccccccccccccccccccccccccccEEEccccccccccHHHHHHHccccccccccEEEEEcccccccccEEEEEEEcccccccccEEEEEEEEccccccccccccccccEEEEcEEEcccccEEEEEcccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccccccccccccEEcccccccccEEEEEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccccEEEEcccccccEEEccccccccEEEEEEcccccccccHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccHHHHHHHHHHHHHHHHHHHHcccccEHccccccccccccccHEEEEEEEccccccEEEEEccccccccccccccccEEEccccHccccccccccHHHcccccccHccEEcccccccccEEEEEcccccccEEEEEEEEEEccccccccccEEEEEEccccEEEEEEccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEccccccccccccccEEEEEEEccccccccEEEccccccccEEEcccccccccEEEccccccccccccccccHHHHHHccccccccccEEEEEccccccccEEEEEEEHHHHccccccEEEEEEEEccccccccccccccEEEEEEccccccccEEEEEEEEccccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccEEccccccccEEEEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHHHcccccEEEEEccccccEEEEccEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mgskckssraYDLMMRFIFISLFAICVCIEKQtvlasdatssgksekfvghkharrklddiggdisidcgvpagfmyldektqlsyksDEEFIRTGVNKNISSKFMSANlqntyatvrsfpegnrncyslrppegkaktYLTRASfmygdyddedklpefdlyigvnrwdsikfdnasHVVIKEIIHSALMDEINVCllntgkgtpfiSALELRHFHNATYRTQSGALVLYrrldvgstttqiirfkddhydriwvpypgfpgsasintSFIIDSLVdsqyrlpsavMKTAvkpmnvndsldfdfeigdptLQFYVYMHFAELesrqgnqyrEFSIELNgnlweksvvpeylqsktisstqpargsklnfslcktsnstlppiLNAIEIYILtdtlqeptdqddvnaIMDIKLsydlgkgwqgdpcspmyyswdglncsyngykppkiislnltsegltgkispslsnlkslenldlsnnsltgsipeflsqlpllrvlnldgnklsgsvptslvarSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSasssqgpkqfRTEVELIDYYknlsptyf
Flexible Loop (DISEMBL)
mgskckssrayDLMMRFIFISLFAICVCIEKQTVlasdatssgksekfvghkharrklddiggdiSIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYAtvrsfpegnrncyslrppegkaktYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATyrtqsgalvlyrRLDVGSTTTqiirfkddhydrIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKtisstqpargsKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSASssqgpkqfrtEVELIDYYKNLSPTYF
Low Complexity Region (SEG)
MGSKCKSSRAYDLMMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLddiggdisidcgVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKIspslsnlkslenldlsnnslTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDYYKNLSPTYF
Disordered region (IsUnstruct)
*********AYDLMMRFIFISLFAICVCIEKQTVLA*****************ARRKLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLR***GKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQ**************LNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGL************************TGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKM**************EVELIDYYK*******
Disordered Region (DISOPRED)
********RAYDLMMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKH*RR**DDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDYYKNLSPTYF
Disordered Region (DISEMBL)
********RAYDLMMRFIFISLFAICVCIEKQTVL*******************RRKLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQS***********SKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKML********KQFRTEVELIDYYKNLSPTYF
Disordered Region (DISPRO)
*GSKCKSSRAYDLMMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDYYKNLSPTYF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSKCKSSRAYDLMMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDYYKNLSPTYF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
O65924	881	Putative leucine-rich rep	yes	no	0.812	0.535	0.474	1e-126
O64556	877	Putative leucine-rich rep	no	no	0.807	0.534	0.479	1e-124
C0LGD6	852	Probable LRR receptor-lik	no	no	0.874	0.596	0.453	1e-123
O64483	876	Senescence-induced recept	no	no	0.803	0.533	0.460	1e-116
Q9FZB1	872	Probable LRR receptor-lik	no	no	0.802	0.534	0.449	1e-106
C0LGR6	913	Probable LRR receptor-lik	no	no	0.795	0.506	0.463	1e-103
C0LGG6	876	Probable LRR receptor-lik	no	no	0.786	0.521	0.423	4e-98
C0LGG4	890	Probable LRR receptor-lik	no	no	0.793	0.517	0.420	3e-97
Q9FZB8	871	Probable LRR receptor-lik	no	no	0.781	0.521	0.420	3e-93
Q9FN93	887	Probable LRR receptor-lik	no	no	0.764	0.500	0.418	3e-93

>sp|O65924|Y2921_ARATH Putative leucine-rich repeat receptor-like protein kinase At2g19210 OS=Arabidopsis thaliana GN=At2g19210 PE=3 SV=1

 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/474 (47%), Positives = 304/474 (64%), Gaps = 2/474 (0%)

Query: 57  KLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYAT 116
           +  D  G +SIDCG+P    Y DE T + Y SD  F+ +G   +I  +F +++L+  +  
Sbjct: 24  RAQDQSGFVSIDCGIPEDSSYNDETTDIKYVSDAAFVESGTIHSIDPEFQTSSLEKQFQN 83

Query: 117 VRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDN 176
           VRSFPEGNRNCY ++PP+GK   YL R  FMYG+YD+  K P+FDLY+G N WDS+  DN
Sbjct: 84  VRSFPEGNRNCYDVKPPQGKGFKYLIRTRFMYGNYDNLGKAPDFDLYLGFNIWDSVTIDN 143

Query: 177 ASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDV 236
           A+ +V KEIIH+   D ++VCL++  +GTPF+SALE+R   + TY T   +L+L++R D+
Sbjct: 144 ATTIVTKEIIHTLRSDHVHVCLVDKNRGTPFLSALEIRLLKSNTYETPYDSLILFKRWDL 203

Query: 237 GSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMN 296
           G      +R+KDD +DRIW+P   FP     N S  IDS  +  ++    VM TA  P +
Sbjct: 204 GGLGALPVRYKDDVFDRIWIPL-RFPKYTIFNASLTIDSNNNEGFQPARFVMNTATSPED 262

Query: 297 VNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELN-GNLWEKSVVPEYLQSK 355
           ++  + F +E  DPT +++VYMHFAE+     N+ REF + LN   +   S  P YL + 
Sbjct: 263 LSQDIIFSWEPKDPTWKYFVYMHFAEVVELPSNETREFKVLLNEKEINMSSFSPRYLYTD 322

Query: 356 TISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSY 415
           T+    P  G KL F L +T  STLPPI+NAIE Y + + LQ PTDQ DV+AIM IK  Y
Sbjct: 323 TLFVQNPVSGPKLEFRLQQTPRSTLPPIINAIETYRVNEFLQSPTDQQDVDAIMRIKSKY 382

Query: 416 DLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENL 475
            + K W GDPC+P+ Y W  +NCSY   + P+IIS+NL+S GLTG+I  + SNL  L  L
Sbjct: 383 GVKKSWLGDPCAPVKYPWKDINCSYVDNESPRIISVNLSSSGLTGEIDAAFSNLTLLHIL 442

Query: 476 DLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
           DLSNNSLTG IP+FL  L  L  LNL+GNKLSG++P  L+ RS    +LLRI G
Sbjct: 443 DLSNNSLTGKIPDFLGNLHNLTELNLEGNKLSGAIPVKLLERSNKKLILLRIDG 496

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|O64556|Y2923_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g19230 OS=Arabidopsis thaliana GN=At2g19230 PE=2 SV=3

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/473 (47%), Positives = 306/473 (64%), Gaps = 4/473 (0%)

Query: 60  DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRS 119
           D  G +SIDCG+P    Y DEKT + Y SD  F+ +G   +I SKF   NL+  +  VRS
Sbjct: 26  DQSGFVSIDCGIPEDSSYYDEKTDIKYISDAAFVESGTIHSIDSKFQKKNLEKQFQKVRS 85

Query: 120 FPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASH 179
           FPEG +NCY ++PP+GK   YL R  FMYG+YD+  K P+FDLY+GVN WDS+  +N++ 
Sbjct: 86  FPEGKKNCYDVQPPQGKGFKYLIRTRFMYGNYDNLGKAPDFDLYLGVNLWDSVTLENSTT 145

Query: 180 VVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGST 239
           +V KEII++   D+++VCL++  +GTPF+S LELR   N  Y T S +L+LYRR D+G+T
Sbjct: 146 IVTKEIIYTLRSDKVHVCLVDKERGTPFLSVLELRLLKNNIYETASDSLMLYRRWDLGAT 205

Query: 240 TTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVN- 298
                R+KDD +DR W+P   FP    +NTS +ID    + +  PS VM TAV PMN + 
Sbjct: 206 GDLPARYKDDIFDRFWMPL-MFPNFLILNTSLMIDPTSSNGFLPPSVVMSTAVAPMNSSI 264

Query: 299 DSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVV--PEYLQSKT 356
           + +   +E  DP  +FY+Y+HFAE+E    N+ REFS+ LN    + + V  P YL + T
Sbjct: 265 EQIMVYWEPRDPNWKFYIYIHFAEVEKLPSNETREFSVFLNKEQIDTTSVFRPSYLYTDT 324

Query: 357 ISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYD 416
           +    P  G  L F L +   ST PPI+NAIE Y   + L  PTDQ+DV+AIM IK  Y 
Sbjct: 325 LYVQNPVSGPFLEFVLRQGVKSTRPPIMNAIETYRTNEFLDLPTDQNDVDAIMKIKTKYK 384

Query: 417 LGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLD 476
           + K W GDPC+P  Y W G+NCSY    PP+IIS+NL+  GLTG+I P    L  L+ LD
Sbjct: 385 VKKNWLGDPCAPFGYPWQGINCSYTANNPPRIISVNLSFSGLTGQIDPVFITLTPLQKLD 444

Query: 477 LSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
           LSNN LTG++P+FL+ LP L  LNL+ NKL+G +P  L+ RS++GSL LR+ G
Sbjct: 445 LSNNRLTGTVPDFLANLPDLTELNLEENKLTGILPEKLLERSKDGSLSLRVGG 497

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGD6|Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1

 Score =  444 bits (1142), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/545 (45%), Positives = 330/545 (60%), Gaps = 37/545 (6%)

Query: 14  MMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLDDIGGDISIDCGVPA 73
            +  I+ + FA+C+ +   +VLA D +                      G ISIDCG+P+
Sbjct: 6   FLYLIYSAAFALCLVV---SVLAQDQS----------------------GFISIDCGIPS 40

Query: 74  GFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPP 133
           G  Y D+ T ++Y SD  F+ TGV+K+I        LQN    +RSFPEG+RNCY+L P 
Sbjct: 41  GSSYKDDTTGINYVSDSSFVETGVSKSIPFT-AQRQLQN----LRSFPEGSRNCYTLIPI 95

Query: 134 EGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDE 193
           +GK K YL RASFMYG+YD E+  PEFDL++G N WD++   N S +V KE+++ +  + 
Sbjct: 96  QGKGKKYLIRASFMYGNYDGENGSPEFDLFLGGNIWDTVLLSNGSSIVSKEVVYLSQSEN 155

Query: 194 INVCLLNTGKGTPFISALELRHF--HNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHY 251
           I VCL N GKGTPFIS LELR     N TY + +GAL   RR D+ S     +R+ DD Y
Sbjct: 156 IFVCLGNKGKGTPFISTLELRFLGNDNTTYDSPNGALFFSRRWDLRSLMGSPVRYDDDVY 215

Query: 252 DRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPT 311
           DRIW+P   F     INTS  + S  +S Y L S VM TA+ P+N    +    E  DP 
Sbjct: 216 DRIWIPR-NFGYCREINTSLPVTSDNNS-YSLSSLVMSTAMTPINTTRPITMTLENSDPN 273

Query: 312 LQFYVYMHFAELE--SRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLN 369
           ++++VYMHFAE+E  S + NQ REF I +NG        P+YLQ+ T     P   SK+ 
Sbjct: 274 VRYFVYMHFAEVEDLSLKPNQTREFDISINGVTVAAGFSPKYLQTNTFF-LNPESQSKIA 332

Query: 370 FSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPM 429
           FSL +T  STLPPI+NA+EIY+     Q  T+Q+D +A+  +K SY + K W GDPC P 
Sbjct: 333 FSLVRTPKSTLPPIVNALEIYVANSFSQSLTNQEDGDAVTSLKTSYKVKKNWHGDPCLPN 392

Query: 430 YYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
            Y W+GLNCSY+   PP+I SLNL+S GLTG IS S SNL  ++ LDLSNN LTG IPEF
Sbjct: 393 DYIWEGLNCSYDSLTPPRITSLNLSSSGLTGHISSSFSNLTMIQELDLSNNGLTGDIPEF 452

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAI 549
           LS+L  LRVLNL+ N L+GSVP+ L+ RS  GS  LR+    G  T      ++  ++ I
Sbjct: 453 LSKLKFLRVLNLENNTLTGSVPSELLERSNTGSFSLRLGENPGLCTEISCRKSNSKKLVI 512

Query: 550 KMLSA 554
            ++++
Sbjct: 513 PLVAS 517

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O64483|SIRK_ARATH Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/469 (46%), Positives = 288/469 (61%), Gaps = 2/469 (0%)

Query: 60  DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRS 119
           D  G ISIDCG+P    Y DE T + Y SD  F+ +G  K I+++F S+        VRS
Sbjct: 26  DQSGFISIDCGIPDDSSYNDETTGIKYVSDSAFVDSGTTKRIAAQFQSSGFDRHLLNVRS 85

Query: 120 FPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASH 179
           FP+  R+CY +  P GK   YL R  FMYG+YDD  ++PEFDLY+GVN WDS+K D+A+ 
Sbjct: 86  FPQSKRSCYDVPTPRGKGFKYLIRTRFMYGNYDDLGRVPEFDLYLGVNFWDSVKLDDATT 145

Query: 180 VVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGST 239
           ++ KEII   L+D + VC+++   GTPF+S LE+R   N TY T   AL L RRLD   T
Sbjct: 146 ILNKEIITIPLLDNVQVCVVDKNAGTPFLSVLEIRLLLNTTYETPYDALTLLRRLDYSKT 205

Query: 240 TTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVND 299
                R+KDD YDRIW P         +NTS  +D  +++ Y+  S VM TA    N + 
Sbjct: 206 GKLPSRYKDDIYDRIWTPRIVSSEYKILNTSLTVDQFLNNGYQPASTVMSTAETARNESL 265

Query: 300 SLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISS 359
            L   F   DP  +FYVYMHFAE+E  + NQ REFSI LN ++   S    YL + T  +
Sbjct: 266 YLTLSFRPPDPNAKFYVYMHFAEIEVLKSNQTREFSIWLNEDVISPSFKLRYLLTDTFVT 325

Query: 360 TQPARGSKLNFSLCKTSNS-TLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLG 418
             P  G  +NFSL +      LPPI+NA+E+Y + + LQ PT   DV+A+  IK +Y + 
Sbjct: 326 PDPVSGITINFSLLQPPGEFVLPPIINALEVYQVNEFLQIPTHPQDVDAMRKIKATYRVK 385

Query: 419 KGWQGDPCSPMYYSWDGLNC-SYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDL 477
           K WQGDPC P+ YSW+G++C   +    P+++SLN++   L G+I P+ SNL S+  LDL
Sbjct: 386 KNWQGDPCVPVDYSWEGIDCIQSDNTTNPRVVSLNISFSELRGQIDPAFSNLTSIRKLDL 445

Query: 478 SNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLR 526
           S N+LTG IP FL+ LP L  LN++GNKL+G VP  L  RS+NGSL LR
Sbjct: 446 SGNTLTGEIPAFLANLPNLTELNVEGNKLTGIVPQRLHERSKNGSLSLR 494

Involved in innate immune response of plants.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/481 (44%), Positives = 306/481 (63%), Gaps = 15/481 (3%)

Query: 63  GDISIDCG-VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFP 121
           G IS+DCG VP    Y ++ T ++YKSD  +I +G+   IS+++  A LQ    TVRSFP
Sbjct: 28  GFISLDCGLVPKNATYTEKTTNITYKSDANYIDSGLVGRISAEY-KAQLQQQTWTVRSFP 86

Query: 122 EGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVV 181
           EG RNCY+      K++ YL RA+F YG+YD   ++P+FD++IG ++W S+K D   +  
Sbjct: 87  EGERNCYNFNL-TAKSR-YLIRATFTYGNYDGLRQVPKFDIHIGPSKWTSVKLDGVGNGA 144

Query: 182 IKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTT 241
           + E+IH    D + +CL+ TGKG PFIS+LELR  +N TY TQSG+L+ + R+   +T T
Sbjct: 145 VLEMIHVLTQDRLQICLVKTGKGIPFISSLELRPLNNNTYLTQSGSLIGFARVFFSATPT 204

Query: 242 QIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSL 301
             IR+ +D +DR+WV   G  G  SI+T  ++D+   + Y +P AV KTA  P N +  L
Sbjct: 205 -FIRYDEDIHDRVWVRQFG-NGLKSISTDLLVDT--SNPYDVPQAVAKTACVPSNASQPL 260

Query: 302 DFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVV-PEYLQSKTISST 360
            FD+ + + T Q YVYMHFAE+++ + N  REF+I  NG     S + PE  +  T+  +
Sbjct: 261 IFDWTLDNITSQSYVYMHFAEIQTLKDNDIREFNITYNGGQNVYSYLRPEKFEISTLFDS 320

Query: 361 QPARGSKLNFSL--CKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLG 418
           +P      +FSL   KT NSTLPP++N +EIY + D L+  TDQD+V+A+++IK +YDL 
Sbjct: 321 KPLSSPDGSFSLSFTKTGNSTLPPLINGLEIYKVLDLLELETDQDEVSAMINIKATYDLS 380

Query: 419 K--GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLD 476
           K   WQGDPC+P  Y W+GLNCSY     P+IISLNL    LTG I+P +S L  L  LD
Sbjct: 381 KKVSWQGDPCAPKSYQWEGLNCSYPNSDQPRIISLNLAENKLTGTITPEISKLTQLIELD 440

Query: 477 LSNNSLTGSIPEFLSQLPLLRVLNLDGN-KLSGSVPTSLVARSQNGSLLLRILGKGGFGT 535
           LS N L+G IPEF + + LL+++NL GN  L+ ++P S+  R  + SL+L IL K    T
Sbjct: 441 LSKNDLSGEIPEFFADMKLLKLINLSGNLGLNSTIPDSIQQRLDSKSLIL-ILSKTVTKT 499

Query: 536 V 536
           V
Sbjct: 500 V 500

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGR6|Y4291_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/472 (46%), Positives = 288/472 (61%), Gaps = 10/472 (2%)

Query: 62  GGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKF---MSANLQNTYATVR 118
            G ISIDCG P    Y+D  T +SY  D  FI  GVN N+S ++    +  L    A VR
Sbjct: 26  AGFISIDCGSPPNINYVDTDTGISYTWDAPFINAGVNLNVSEEYGYPKNPVLPFPLADVR 85

Query: 119 SFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNAS 178
           SFP+GNRNCY+L P +GK   YL RASFMYG+YD ++ LPEFDLY+ VN W S+K  NAS
Sbjct: 86  SFPQGNRNCYTLTPSDGKGNLYLIRASFMYGNYDGKNALPEFDLYVNVNFWTSVKLRNAS 145

Query: 179 HVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSG---ALVLYRRLD 235
             VIKEI+  A  D I VCL+N GKGTPFISALELR  +++ Y T+ G   +LVLY+R D
Sbjct: 146 ENVIKEILSFAESDTIYVCLVNKGKGTPFISALELRPMNSSIYGTEFGRNVSLVLYQRWD 205

Query: 236 VGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPM 295
            G       R++ D YDRIW PY     + ++ T +I   +  S YR P  V+KTA  P 
Sbjct: 206 TG-YLNGTGRYQKDTYDRIWSPYSPVSWNTTMTTGYI--DIFQSGYRPPDEVIKTAASPK 262

Query: 296 NVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSK 355
           + ++ L+  +   DP  +FY Y++FAELE+ + N+ RE  I  NG+    +  P    S 
Sbjct: 263 SDDEPLELSWTSSDPDTRFYAYLYFAELENLKRNESREIKIFWNGSPVSGAFNPSPEYSM 322

Query: 356 TISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSY 415
           T+S+++   G     S+ KT+ ST PPILNAIEI+      +  T  DDV AI  IK +Y
Sbjct: 323 TVSNSRAFTGKDHWISVQKTAESTRPPILNAIEIFSAQSLDEFYTRIDDVQAIESIKSTY 382

Query: 416 DLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENL 475
            + K W GDPCSP  + W+G+ CSYN     +I SLNL+S GL G I+ +  NL  LE+L
Sbjct: 383 KVNKIWTGDPCSPRLFPWEGIGCSYNT-SSYQIKSLNLSSSGLHGPIAFAFRNLSLLESL 441

Query: 476 DLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRI 527
           DLSNN+L G +PEFL+ L  L+ LNL GN L+G +P SL  R+    L L +
Sbjct: 442 DLSNNNLKGIVPEFLADLKYLKSLNLKGNNLTGFIPRSLRKRATANGLALSV 493

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG6|Y5189_ARATH Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2

 Score =  359 bits (921), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 201/475 (42%), Positives = 286/475 (60%), Gaps = 18/475 (3%)

Query: 60  DIGGDISIDCG-VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVR 118
           D  G IS+DCG VP    Y+++ T ++Y+SD  +I +GV   I+  + +   Q  +A +R
Sbjct: 21  DQSGFISLDCGLVPTEITYVEKSTNITYRSDATYIDSGVPGKINEVYRTQFQQQIWA-LR 79

Query: 119 SFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNAS 178
           SFPEG RNCY+        + YL R +F+YG+YD  ++LP FDLYIG N+W S+      
Sbjct: 80  SFPEGQRNCYNFS--LTAKRKYLIRGTFIYGNYDGLNQLPSFDLYIGPNKWTSVSIPGVR 137

Query: 179 HVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGS 238
           +  + E+IH    D + +CL+ TG+ TPFIS+LELR  +N TY T+SG+L++  RL   S
Sbjct: 138 NGSVSEMIHVLRQDHLQICLVKTGETTPFISSLELRPLNNNTYVTKSGSLIVVARLYF-S 196

Query: 239 TTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVN 298
            T   +R+ +D +DRIW+P+     S  ++T   +D+   + Y +P  V KTA  P+N  
Sbjct: 197 PTPPFLRYDEDVHDRIWIPFLDNKNSL-LSTELSVDT--SNFYNVPQTVAKTAAVPLNAT 253

Query: 299 DSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNL-WEKSVVPEYLQSKTI 357
             L  ++ + D T Q Y+YMHFAE+E+ + N+ REF+I  NG   W     P   +  T+
Sbjct: 254 QPLKINWSLDDITSQSYIYMHFAEIENLEANETREFNITYNGGENWFSYFRPPKFRITTV 313

Query: 358 SSTQPARGSKL----NFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKL 413
            +  PA  S L    NF+   T NST PP++N +EIY + +  Q  T QD+V+A+M+IK 
Sbjct: 314 YN--PAAVSSLDGNFNFTFSMTGNSTHPPLINGLEIYQVLELPQLDTYQDEVSAMMNIKT 371

Query: 414 SYDLGK--GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKS 471
            Y L K   WQGDPC+P  Y W+GLNCSY  + PP+IISLNL+   L+G I+  +S L  
Sbjct: 372 IYGLSKRSSWQGDPCAPELYRWEGLNCSYPNFAPPQIISLNLSGSNLSGTITSDISKLTH 431

Query: 472 LENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK-LSGSVPTSLVARSQNGSLLL 525
           L  LDLSNN L+G IP   S +  L ++NL GNK L+ SVP +L  R  N SL L
Sbjct: 432 LRELDLSNNDLSGDIPFVFSDMKNLTLINLSGNKNLNRSVPETLQKRIDNKSLTL 486

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGG4|Y1518_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2

 Score =  356 bits (913), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/478 (42%), Positives = 293/478 (61%), Gaps = 17/478 (3%)

Query: 62  GGDISIDCG-VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSF 120
            G IS+DCG VP    Y ++ T ++YKSD ++I +G+   I+  + +   Q  +A VRSF
Sbjct: 27  AGFISLDCGLVPKETTYTEKSTNITYKSDVDYIDSGLVGKINDAYKTQFQQQVWA-VRSF 85

Query: 121 PEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHV 180
           P G RNCY++         YL R +F+YG+YD  ++ P FDL+IG N+W S+K    ++ 
Sbjct: 86  PVGQRNCYNVNLTANNK--YLIRGTFVYGNYDGLNQFPSFDLHIGPNKWSSVKILGVTNT 143

Query: 181 VIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTT 240
            + EIIH    D + VCL+ TG  TPFIS+LE+R  +N +Y TQSG+L+L+ R+   S++
Sbjct: 144 SMHEIIHVVPQDSLEVCLVKTGPTTPFISSLEVRPLNNESYLTQSGSLMLFARVYFPSSS 203

Query: 241 TQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDS 300
           +  IR+ +D +DR+W  +     +  I+T   ID+   + Y +P +VMKTA  P N ++ 
Sbjct: 204 SSFIRYDEDIHDRVWNSFTD-DETVWISTDLPIDT--SNSYDMPQSVMKTAAVPKNASEP 260

Query: 301 LDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNL-WEKSVVPEYLQSKTISS 359
               + + + T Q YVYMHFAE+++   N+ REF+I  NG L W   + P  L   TI +
Sbjct: 261 WLLWWTLDENTAQSYVYMHFAEVQNLTANETREFNITYNGGLRWFSYLRPPNLSISTIFN 320

Query: 360 TQPARGSK--LNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDL 417
            +    S    NF+   T NSTLPP+LNA+EIY + D LQ  T++D+V+A+M+IK +Y L
Sbjct: 321 PRAVSSSNGIFNFTFAMTGNSTLPPLLNALEIYTVVDILQLETNKDEVSAMMNIKETYGL 380

Query: 418 GK--GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENL 475
            K   WQGDPC+P  Y W+GLNCSY   +  +IISLNL    LTG I+  +S L  L  L
Sbjct: 381 SKKISWQGDPCAPQLYRWEGLNCSYPDSEGSRIISLNLNGSELTGSITSDISKLTLLTVL 440

Query: 476 DLSNNSLTGSIPEFLSQLPLLRVLNLDGN---KLSGSVPTSLVARSQNGSLLLRILGK 530
           DLSNN L+G IP F +++  L+++NL GN    L+ ++P SL  R  + SL L ILG+
Sbjct: 441 DLSNNDLSGDIPTFFAEMKSLKLINLSGNPNLNLT-AIPDSLQQRVNSKSLTL-ILGE 496

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZB8|Y5181_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1

 Score =  343 bits (879), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 198/471 (42%), Positives = 287/471 (60%), Gaps = 17/471 (3%)

Query: 53  HARRKLDDIGGDISIDCGVP-AGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQ 111
           H  +  D IG  I++DCG+   G  Y +  T L+Y SD+ F+++G    I+ +  S   +
Sbjct: 16  HLVQAQDPIGF-INLDCGLSIQGSPYKESSTGLTYTSDDGFVQSGKIGKITKELESL-YK 73

Query: 112 NTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDS 171
               T+R FP+G RNC+SL    G    YL + +F+YG+YD  + +P+FDLYIG N W +
Sbjct: 74  KPERTLRYFPDGVRNCFSLNVTRGTK--YLIKPTFLYGNYDGRNVIPDFDLYIGPNMWIT 131

Query: 172 IKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLY 231
           +  DN     IKEI+H +  + + VCL+ TG   P+I+ LELR   +  Y  +SG+L   
Sbjct: 132 VNTDNT----IKEILHVSKSNTLQVCLVKTGTSIPYINTLELRPLADDIYTNESGSLNYL 187

Query: 232 RRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTA 291
            R+   S     I + DD +DRIW     +     + T+  I+  V + Y LP  VMKTA
Sbjct: 188 FRV-YYSNLKGYIEYPDDVHDRIWKQILPYQDWQILTTNLQIN--VSNDYDLPQRVMKTA 244

Query: 292 VKPMNVNDS-LDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPE 350
           V P+  + + ++F + +  PT QFY+++HFAEL+S Q N+ REF++ LNGN+  KS  P+
Sbjct: 245 VTPIKASTTTMEFPWNLEPPTSQFYLFLHFAELQSLQANETREFNVVLNGNVTFKSYSPK 304

Query: 351 YLQSKTISSTQPAR--GSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAI 408
           +L+ +T+ ST P +  G K    L KTS STLPP++NA+E Y + D  Q  T+ D+V AI
Sbjct: 305 FLEMQTVYSTAPKQCDGGKCLLQLVKTSRSTLPPLINAMEAYTVLDFPQIETNVDEVIAI 364

Query: 409 MDIKLSYDLGKG-WQGDPCSPMYYSWDGLNCS-YNGYKPPKIISLNLTSEGLTGKISPSL 466
            +I+ +Y L K  WQGDPC P  + WDGLNC+  +   PP I SLNL+S GLTG I  ++
Sbjct: 365 KNIQSTYGLSKTTWQGDPCVPKKFLWDGLNCNNSDDSTPPIITSLNLSSSGLTGIIVLTI 424

Query: 467 SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVAR 517
            NL +L+ LDLSNN+L+G +PEFL+ +  L V+NL GN LSG VP  L+ +
Sbjct: 425 QNLANLQELDLSNNNLSGGVPEFLADMKSLLVINLSGNNLSGVVPQKLIEK 475

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN93|Y5596_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1

 Score =  343 bits (879), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 192/459 (41%), Positives = 276/459 (60%), Gaps = 15/459 (3%)

Query: 63  GDISIDCGVPAG--FMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSF 120
           G IS+DCG+PA     Y + +T L + SD  FI++G    I +  + A+      T+R F
Sbjct: 28  GFISLDCGLPANEPSPYTEPRTGLQFSSDAAFIQSGKIGRIQAN-LEADFLKPSTTMRYF 86

Query: 121 PEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHV 180
           P+G RNCY+L   +G+   +L RA F+YG+YD  D  P+FDLY+G N W +I      + 
Sbjct: 87  PDGKRNCYNLNVEKGR--NHLIRARFVYGNYDGRDTGPKFDLYLGPNPWATIDLAKQVNG 144

Query: 181 VIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTT 240
              EI+H    +++ VCL+ TG+ TP IS LE+R   + TY T+SG+L LY R +  S +
Sbjct: 145 TRPEIMHIPTSNKLQVCLVKTGETTPLISVLEVRPMGSGTYLTKSGSLKLYYR-EYFSKS 203

Query: 241 TQIIRFKDDHYDRIWVPYPGFPGS-ASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVND 299
              +R+ DD YDR W  +  F      INT+  + +  D  Y+ P   + TA  P N + 
Sbjct: 204 DSSLRYPDDIYDRQWTSF--FDTEWTQINTTSDVGNSND--YKPPKVALTTAAIPTNASA 259

Query: 300 SLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISS 359
            L  ++   +P  Q+YVY HF+E++  Q N+ REF++ LNG L+   VVP  L   TI S
Sbjct: 260 PLTNEWSSVNPDEQYYVYAHFSEIQELQANETREFNMLLNGKLFFGPVVPPKLAISTILS 319

Query: 360 TQP--ARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDL 417
             P    G + N  L +T+ STLPP+LNA E+Y +    Q  T++ DV+A+ +I+ +Y+L
Sbjct: 320 VSPNTCEGGECNLQLIRTNRSTLPPLLNAYEVYKVIQFPQLETNETDVSAVKNIQATYEL 379

Query: 418 GK-GWQGDPCSPMYYSWDGLNCSYNGY-KPPKIISLNLTSEGLTGKISPSLSNLKSLENL 475
            +  WQ DPC P  + WDGLNCS      PP+I +LNL+S GLTG I+ ++ NL +LE L
Sbjct: 380 SRINWQSDPCVPQQFMWDGLNCSITDITTPPRITTLNLSSSGLTGTITAAIQNLTTLEKL 439

Query: 476 DLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           DLSNN+LTG +PEFLS +  L V+NL GN L+G++P SL
Sbjct: 440 DLSNNNLTGEVPEFLSNMKSLLVINLSGNDLNGTIPQSL 478

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
147800914	809	hypothetical protein VITISV_044244 [Viti	0.900	0.646	0.599	0.0
297743150	918	unnamed protein product [Vitis vinifera]	0.901	0.570	0.592	0.0
255549760	1234	Serine/threonine-protein kinase-transfor	0.848	0.399	0.617	1e-177
356557314	875	PREDICTED: putative leucine-rich repeat	0.820	0.545	0.606	1e-169
359482547	896	PREDICTED: putative leucine-rich repeat	0.870	0.564	0.498	1e-136
449463629	877	PREDICTED: putative leucine-rich repeat	0.810	0.537	0.498	1e-130
449516792	877	PREDICTED: putative leucine-rich repeat	0.810	0.537	0.494	1e-130
255549700	884	BRASSINOSTEROID INSENSITIVE 1-associated	0.803	0.528	0.510	1e-129
225442394	879	PREDICTED: putative leucine-rich repeat	0.803	0.531	0.512	1e-127
255549712	884	BRASSINOSTEROID INSENSITIVE 1-associated	0.803	0.528	0.494	1e-125

>gi|147800914|emb|CAN68923.1| hypothetical protein VITISV_044244 [Vitis vinifera]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/527 (59%), Positives = 397/527 (75%), Gaps = 4/527 (0%)

Query: 1   MGSKCKSSRAYDLMMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLDD 60
           M  +C+ + A+   +  IF+ +FA+ + +E+   LASD    G SE  +  K ARRKLDD
Sbjct: 1   MFVECRGTYAWSSKVCLIFLQVFALTISMEESVALASDGVF-GDSESVINRKPARRKLDD 59

Query: 61  IGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSF 120
           I G I+IDCG+P    Y+D +T L Y SD  FIR+G+NKNISSKF S  L  +   VRSF
Sbjct: 60  IAGSINIDCGLPEDCKYIDAETGLQYTSDASFIRSGINKNISSKFSSTTLHKSLTNVRSF 119

Query: 121 PEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHV 180
           P+G RNCY+LRPPEG    YL RASFMYG+YD+ +++P+FDLYIGVN WDS+K DNASH+
Sbjct: 120 PQGKRNCYTLRPPEGHGTMYLIRASFMYGNYDELNQVPQFDLYIGVNMWDSVKLDNASHL 179

Query: 181 VIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTT 240
           V+KEI+H+   D+I VCL+N G G PFIS+LE+RHFH+++Y+T+SG+L LYRRLD GSTT
Sbjct: 180 VMKEILHAPSDDDIYVCLVNIGYGEPFISSLEVRHFHDSSYKTESGSLALYRRLDAGSTT 239

Query: 241 TQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDS 300
            +I+RFKDD YDRIW PY   P   S+NT+  IDS  +++Y+LPS VM TA++PMN + S
Sbjct: 240 NEIVRFKDDAYDRIWFPY-NLPDCESLNTTVPIDSHAETEYKLPSKVMTTAIRPMNSSAS 298

Query: 301 LDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLW-EKSVVPEYLQSKTISS 359
           LDFDF+IGD TL+FYVYMHFAELE  Q NQ R FSI LNGN W E ++VP+YL S+T+++
Sbjct: 299 LDFDFDIGDSTLEFYVYMHFAELEGLQENQTRNFSITLNGNPWGEANIVPKYLHSRTVNN 358

Query: 360 TQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK 419
            QP RGSKL FS+ KT NS+LPPILNA+EIY++ D LQ PT Q+DVN I  IK  Y + K
Sbjct: 359 KQPVRGSKLKFSIYKTLNSSLPPILNAMEIYMVKDLLQAPTCQEDVNGISRIKSFYLVEK 418

Query: 420 GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSN 479
            WQGDPC+P+   WDGL CS NGY+ P+IISLNL+S GL G ISPSL NL +L+ LDLSN
Sbjct: 419 NWQGDPCAPV-QPWDGLTCSNNGYESPRIISLNLSSSGLRGTISPSLLNLTALQFLDLSN 477

Query: 480 NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLR 526
           NSLTG +PEFLS+L  L  LN+ GNKLSGSVP  L+ARS+ GSL LR
Sbjct: 478 NSLTGELPEFLSRLSFLTALNVTGNKLSGSVPPDLIARSEKGSLSLR 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743150|emb|CBI36017.3| unnamed protein product [Vitis vinifera]

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/528 (59%), Positives = 395/528 (74%), Gaps = 4/528 (0%)

Query: 1   MGSKCKSSRAYDLMMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLDD 60
           M  +C+ + A+   +  IF+ +FA+ + +E+   LASD    G SE  +  K ARRKLDD
Sbjct: 1   MFVECRGTYAWSSKVCLIFLQVFALTISMEESVALASDGVF-GNSESVINRKPARRKLDD 59

Query: 61  IGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSF 120
           I G I+IDCG+P    Y+D +T L Y SD  FIR+G+NKNISSKF S  L  +   VRSF
Sbjct: 60  IAGSINIDCGLPEDCKYIDAETGLQYTSDASFIRSGINKNISSKFSSTTLHKSLTNVRSF 119

Query: 121 PEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHV 180
           P+G RNCY+LRPPEG    YL RASFMYG+YD+ +++P+FDLYIGVN WDS+K DNASH+
Sbjct: 120 PQGKRNCYTLRPPEGHGTMYLIRASFMYGNYDELNQVPQFDLYIGVNMWDSVKLDNASHL 179

Query: 181 VIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTT 240
           V+KEI+H+   D+I VCL+N G G PFIS+LE+RHFH+++Y+T+SG+L LYRRLD GSTT
Sbjct: 180 VMKEILHAPSDDDIYVCLVNIGYGEPFISSLEVRHFHDSSYKTESGSLALYRRLDAGSTT 239

Query: 241 TQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDS 300
            +I+RFKDD YDRIW PY   P   S+NT+  IDS  +++Y+LPS VM TA++PMN + S
Sbjct: 240 NEIVRFKDDAYDRIWFPY-NLPDCESLNTTVPIDSHAETEYKLPSKVMTTAIRPMNSSAS 298

Query: 301 LDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLW-EKSVVPEYLQSKTISS 359
           LDFDF+IGD TL+FYVYMHFAELE  Q NQ R FSI LNGN W E ++VP+YL S+T+++
Sbjct: 299 LDFDFDIGDSTLEFYVYMHFAELEGLQENQTRNFSITLNGNPWGEANIVPKYLHSRTVNN 358

Query: 360 TQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK 419
            QP RGSKL FS+ KT NS+LPPILNA+EIY++   LQ PT Q+DVN I  IK  Y + K
Sbjct: 359 KQPVRGSKLKFSIYKTLNSSLPPILNAMEIYMVKGLLQAPTCQEDVNGISRIKSFYLVEK 418

Query: 420 GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSN 479
            WQGDPC+P+   WDGL CS NGY+ P+IISL L+S GL G ISPSL NL +L+ LDLSN
Sbjct: 419 NWQGDPCAPV-QPWDGLTCSNNGYESPRIISLKLSSSGLRGTISPSLLNLTALQFLDLSN 477

Query: 480 NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRI 527
           NSLTG +PEFLS+L  L  LN+ GNKLSGSVP  L+ARS+ GSL L +
Sbjct: 478 NSLTGELPEFLSRLSFLTALNVTGNKLSGSVPPDLIARSEKGSLSLSV 525

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549760|ref|XP_002515931.1| Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis] gi|223544836|gb|EEF46351.1| Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]

 Score =  626 bits (1615), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 307/497 (61%), Positives = 388/497 (78%), Gaps = 4/497 (0%)

Query: 35  LASDATSSGKSE-KFVGHKHARRKLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFI 93
           +AS ++    SE K +   H RRKLDDI G I+IDCG+       + KT + Y SD  + 
Sbjct: 1   MASGSSRFRNSEAKSIVQMHTRRKLDDIAGSINIDCGLSEDSSSTEVKTGMHYISDTLYT 60

Query: 94  RTGVNKNISSKFMS-ANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYD 152
            TGVNK ISS F S A    +  TVRSF +G RNCY+LRPPEGKA  YL RASFMYG+YD
Sbjct: 61  NTGVNKKISSNFSSDAQFPVSLMTVRSFSQGIRNCYTLRPPEGKASIYLIRASFMYGNYD 120

Query: 153 DEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALE 212
           + ++LP+F LY+GVN WD++KFDNASHVVIKEIIH   +++I VCLLNTG GTPFISALE
Sbjct: 121 NLNQLPQFSLYLGVNLWDTVKFDNASHVVIKEIIHVPALNDIYVCLLNTGSGTPFISALE 180

Query: 213 LRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFI 272
           LRHFHN+TYRT+SG+LVL++RLD GSTT +I+R+ DD YDRIW PY   P  A+++TSF 
Sbjct: 181 LRHFHNSTYRTESGSLVLFQRLDFGSTTNEIVRYHDDAYDRIWFPY-NCPQYAALSTSFA 239

Query: 273 IDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYR 332
           +DSL  + + LPS VM+TAV+PMN N+SL+F+F+IG P + FY+YMHFAE+ES Q NQYR
Sbjct: 240 VDSLKTTDFNLPSKVMQTAVEPMNANESLNFEFDIGTPNMNFYIYMHFAEVESIQRNQYR 299

Query: 333 EFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYIL 392
            F+I LNG L+ + VV +YLQS TIS+ QP RG+K++ SL K  NSTLPPILNA+EIY++
Sbjct: 300 GFNIALNGKLFNEGVVLKYLQSMTISTMQPMRGAKISISLNKLPNSTLPPILNAMEIYLM 359

Query: 393 TDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLN 452
            +  Q+PT Q+D N+I DI  SY++GKGWQGDPC P   +WDGLNCS NGY PP+IISLN
Sbjct: 360 NEFWQQPTYQEDANSIEDIMSSYNVGKGWQGDPCLPA-PAWDGLNCSDNGYDPPRIISLN 418

Query: 453 LTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT 512
           L+S G+TG+IS SLSNLK L++LDLSNNSLTG++PEFLSQLP L++LNL GN+LSGS+P+
Sbjct: 419 LSSIGITGQISSSLSNLKFLQHLDLSNNSLTGAVPEFLSQLPDLKILNLGGNRLSGSIPS 478

Query: 513 SLVARSQNGSLLLRILG 529
           +L+ +S N SLLLR+ G
Sbjct: 479 ALMEKSNNQSLLLRLDG 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557314|ref|XP_003546962.1| PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Glycine max]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 293/483 (60%), Positives = 353/483 (73%), Gaps = 6/483 (1%)

Query: 51  HKHARRKLDDIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANL 110
           HK  RRKLDD+ G I IDCG+  G  Y D+KTQ+ Y SD +FI TG +K+IS KF+S   
Sbjct: 10  HKQGRRKLDDVTGSICIDCGIAEGLDYTDDKTQIHYTSDAQFIGTGTSKSISHKFISDTP 69

Query: 111 QNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWD 170
           Q T+  VRSFPEG +NCY+LR PEG+   YL RASFMYG+YDD +KLP+FDLYIGVN WD
Sbjct: 70  QRTFTNVRSFPEGKKNCYTLRHPEGRNTIYLIRASFMYGNYDDLNKLPQFDLYIGVNLWD 129

Query: 171 SIKFDNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVL 230
           ++ F+NA+HVVIKEI+H   +DE+ VCLLNT KGTPFISALE+RHF +++YRT+S  L L
Sbjct: 130 TVMFENATHVVIKEILHVPSLDELYVCLLNTDKGTPFISALEVRHFDHSSYRTKSELLSL 189

Query: 231 YRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKT 290
           YRR D+GSTT +I+R+  D YDR+W PY   P S  +NTSF +DSL  + Y LPSAVMKT
Sbjct: 190 YRRFDIGSTTNEIVRYDKDVYDRMWYPY-NLPDSTPLNTSFTVDSLNHTAYHLPSAVMKT 248

Query: 291 AVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPE 350
           AV+P N NDSL+F+F+ G PT + YVYMHFAE+E    N+ R F I LNG LW + V P 
Sbjct: 249 AVRPTNENDSLEFEFDTGQPTSESYVYMHFAEIEVLNENECRAFDITLNGKLWAEYVTPT 308

Query: 351 YLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMD 410
           YLQS TI   Q  RGSKL FS+ K  NST PPILNA+EIYI+ + L  PT+QDDV AI+D
Sbjct: 309 YLQSNTIDGNQSIRGSKLKFSMHKKPNSTHPPILNAMEIYIVKEFLHSPTNQDDVKAIID 368

Query: 411 IKLSYDL----GKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSL 466
           IK  Y L    GK WQGDPC+P  YSW+GLNCS NGY PP I +L L S GL G I  S 
Sbjct: 369 IKSHYKLTSSVGKSWQGDPCAPSKYSWNGLNCSNNGYNPPTITALYLASSGLGGTIIASF 428

Query: 467 SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLR 526
             LK LE+LDLSNNSLTG +P+F SQL  L+ LNL GN+LSG +P+ L  RS NGSLLL 
Sbjct: 429 LELKFLESLDLSNNSLTGPLPDF-SQLQHLKALNLSGNRLSGEIPSLLKERSNNGSLLLS 487

Query: 527 ILG 529
           + G
Sbjct: 488 VDG 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482547|ref|XP_002277236.2| PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Vitis vinifera]

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/516 (49%), Positives = 339/516 (65%), Gaps = 10/516 (1%)

Query: 14  MMRFIFISLFAICVCIEKQTVLASDATSSGKSEKFVGHKHARRKLDDIGGDISIDCGVPA 73
           ++R IF+ LF I        ++A     +  + +   H   RR   D  G ISIDCG+  
Sbjct: 7   LVRLIFV-LFTIISSGNNPELVAGKPHHTASTFQH-NHPSPRRLAADTQGFISIDCGIAP 64

Query: 74  GFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPP 133
           G  Y D+KTQ+ Y SD +F  TG+N N+S    S N       VRSFPEG RNCY+L P 
Sbjct: 65  GSYYTDDKTQIPYTSDADFTDTGINYNVSR---SENPSKQLMNVRSFPEGARNCYTLEPE 121

Query: 134 EGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDE 193
           +GK   YL RA FMYG+YD +++LP F L++GV+ WD+I F+N+S  V KEIIH    D 
Sbjct: 122 KGKGNKYLIRAFFMYGNYDSKNQLPVFKLHLGVDEWDTINFNNSSQTVRKEIIHVPKTDY 181

Query: 194 INVCLLNTGKGTPFISALELRHFHNATY-RTQSGALVLYRRLDVGSTTTQI-IRFKDDHY 251
           I+VCL+N G GTPFISALELR   N++Y +T+SG+L+L+ R D+GS   ++ +R+KDD  
Sbjct: 182 IDVCLVNNGSGTPFISALELRPLGNSSYNKTESGSLLLFNRWDIGSEQEKLQVRYKDDAL 241

Query: 252 DRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPT 311
           DRIW  Y       SI   F   S  +++++LP  +M TA  P N ++ L F  ++ DP+
Sbjct: 242 DRIWNSYMS-TSWESITAGFESYSYSETRFKLPGIIMSTAATPKNESEPLRFFLDMDDPS 300

Query: 312 LQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFS 371
            +FY+YMHF+E+   QGNQ R F+I LNGNLW  +V PE L S TI ST   RGS+L+FS
Sbjct: 301 QRFYLYMHFSEVLQLQGNQSRVFTIWLNGNLWSDAVAPERLTSTTIFSTNSVRGSRLSFS 360

Query: 372 LCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYY 431
           L KT  S LPPI+NA+E+Y++ +  Q  TDQ+DV AI  IK  Y + + WQGDPC PM Y
Sbjct: 361 LQKTGESMLPPIINALEVYVIKEFSQSTTDQEDVEAIKKIKSVYMVRRNWQGDPCLPMDY 420

Query: 432 SWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS 491
            WDGL CS NG   P +ISLNL+   LTGKI PS SNLKSL+NLDLS N+LTGS+PEFL+
Sbjct: 421 QWDGLKCSDNG--SPTLISLNLSYSNLTGKIHPSFSNLKSLQNLDLSYNNLTGSVPEFLA 478

Query: 492 QLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRI 527
           +L  L  LNL+GN L+GSVP +L+ + QNG+L L +
Sbjct: 479 ELSSLTFLNLEGNNLTGSVPQALMEKYQNGTLSLSL 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463629|ref|XP_004149534.1| PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Cucumis sativus]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 236/473 (49%), Positives = 316/473 (66%), Gaps = 2/473 (0%)

Query: 60  DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRS 119
           D  G ISIDCG+     Y D  T + Y SD  F  TG++K+ISS F +  L   +  VRS
Sbjct: 25  DQSGFISIDCGISGNSSYKDSVTNIKYISDVNFTETGISKSISSDFNTTTLPQQFWYVRS 84

Query: 120 FPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASH 179
           FPEG RNCY+++  +GK   YL RASFMYG YD +   P FDLY+GVN+W ++   N S+
Sbjct: 85  FPEGERNCYTIKLAQGKGFKYLIRASFMYGSYDGQGTAPVFDLYMGVNKWGTVVMGNESN 144

Query: 180 VVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGST 239
           ++IKE++H      I +CL+NTG G+PFISALELR   NA+Y T    L L+RRLDVGST
Sbjct: 145 IIIKEVVHVLPTSSICICLVNTGFGSPFISALELRLLKNASYVTDFDLLALHRRLDVGST 204

Query: 240 TTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVND 299
             + +R+ DD  DRIWVPY  F     +NTS  +DS   + Y LP  VM TA+   N +D
Sbjct: 205 INRTVRYNDDISDRIWVPY-NFLNYKIMNTSSTVDSGGSNSYNLPGIVMSTAITTYNASD 263

Query: 300 SLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISS 359
            L+F +   DP+ ++++++HFA+LE  Q NQ REF+I  NGN +     P+YLQS T+SS
Sbjct: 264 PLEFHWVPEDPSARYHIFLHFADLEKLQANQLREFNIYQNGNYFHGPFSPDYLQSTTLSS 323

Query: 360 TQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK 419
           T P  G  + FSL KT+ S LPPILNA+EIY++ DTLQ  TD+ D+ A+M+IK  Y + K
Sbjct: 324 TSPMSGENIAFSLLKTNASNLPPILNALEIYLVLDTLQSRTDEQDITALMNIKSFYGVRK 383

Query: 420 GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSN 479
            WQGDPC P  + WDGL CSY+   P +I +LNL+S GL G+I+  +S L +L+ LDLSN
Sbjct: 384 NWQGDPCQPKSFLWDGLICSYDDQIPNRITTLNLSSSGLVGEITTYVSELTTLQYLDLSN 443

Query: 480 NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGG 532
           N+L+G +P+ LS+L  L+VL+L  N L GS+P+ LV RS+NGSL +R+ G GG
Sbjct: 444 NNLSGPVPDSLSKLQSLKVLDLRDNPLLGSIPSELVERSKNGSLSIRV-GAGG 495

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516792|ref|XP_004165430.1| PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Cucumis sativus]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/473 (49%), Positives = 316/473 (66%), Gaps = 2/473 (0%)

Query: 60  DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRS 119
           D  G ISIDCG+     Y D  T + Y SD  F  TG++K+ISS F +  L   +  VRS
Sbjct: 25  DQSGFISIDCGISGNSSYKDSVTNIKYISDVNFTETGISKSISSDFNTTTLPQQFWYVRS 84

Query: 120 FPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASH 179
           FPEG RNCY+++  +GK   YL RASFMYG YD +   P FDLY+GVN+W ++   N S+
Sbjct: 85  FPEGERNCYTIKLAQGKGFKYLIRASFMYGSYDGQGTAPVFDLYMGVNKWGTVVMGNESN 144

Query: 180 VVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGST 239
           ++IKE++H      I +CL+NTG G+PFISALELR   NA+Y T    L L+RRLDVGST
Sbjct: 145 IIIKEVVHVLPTSSICICLVNTGFGSPFISALELRLLKNASYVTDFDLLALHRRLDVGST 204

Query: 240 TTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVND 299
             + +R+ DD  DRIWVPY  F     +NTS  +DS   + Y LP  VM TA+   N +D
Sbjct: 205 INRTVRYNDDISDRIWVPY-NFLNYKIMNTSSTVDSGGSNSYNLPGIVMSTAITTYNASD 263

Query: 300 SLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISS 359
            L+F +   DP+ ++++++HFA+LE  Q NQ REF+I  NGN +     P+YLQS T+SS
Sbjct: 264 PLEFHWVPEDPSARYHIFLHFADLEKLQANQLREFNIYQNGNYFHGPFSPDYLQSTTLSS 323

Query: 360 TQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK 419
           T P  G  + FSL KT+ S LPPILNA+E+Y++ DTLQ  TD+ D+ A+M+IK  Y + K
Sbjct: 324 TSPMSGENIAFSLLKTNASNLPPILNALEVYLVLDTLQSRTDEQDITALMNIKSFYGVRK 383

Query: 420 GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSN 479
            WQGDPC P  + WDGL CSY+   P +I +LNL+S GL G+I+  +S L +L+ LDLSN
Sbjct: 384 NWQGDPCQPKSFLWDGLICSYDDQIPNRITTLNLSSSGLVGEITTYVSELTTLQYLDLSN 443

Query: 480 NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGG 532
           N+L+G +P+ LS+L  L+VL+L  N L GS+P+ L+ RS+NGSL +R+ G GG
Sbjct: 444 NNLSGPVPDSLSKLQSLKVLDLRDNPLLGSIPSELMERSKNGSLSIRV-GAGG 495

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549700|ref|XP_002515901.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223544806|gb|EEF46321.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 240/470 (51%), Positives = 312/470 (66%), Gaps = 3/470 (0%)

Query: 60  DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRS 119
           D  G ISIDCG+PA   Y DE T L+Y SD  FI  G+   I+ K  + +      +VRS
Sbjct: 27  DQSGFISIDCGLPANSSYTDETTSLNYISDASFIDVGIITTITPKVTTNSTDRQQLSVRS 86

Query: 120 FPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASH 179
           FPEG+RNC+++     K   YL RA F +GDYD  ++LPEFDL++G N+W ++K  NAS 
Sbjct: 87  FPEGDRNCFNVE--LAKNTKYLIRAIFAHGDYDGSNELPEFDLHLGPNKWVTVKILNASI 144

Query: 180 VVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGST 239
            VIKEIIH+  ++ I++CL+NT  G PFISALELR   N TY  QSGALV   RLD+GS 
Sbjct: 145 PVIKEIIHTPTLNYIHICLVNTDSGMPFISALELRPLKNTTYVAQSGALVKSTRLDLGSL 204

Query: 240 TTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVND 299
           T + +R+ DD +DRIW P   F     ++T   +D+     ++ PS VM+TA  P N ++
Sbjct: 205 TNKTVRYPDDVFDRIWTP-DHFHKWTDLSTPDTVDAQNHIDFQPPSVVMRTANMPTNASE 263

Query: 300 SLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISS 359
           +++F  +I D T  FYVYMHFAE+   Q NQ R F+I LNG +W   V+P +L S T+ S
Sbjct: 264 NMEFYIDIDDTTSLFYVYMHFAEIVELQANQSRLFNISLNGTIWYGPVIPNHLSSGTVYS 323

Query: 360 TQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK 419
             P  G    FSL K   STLPP+LNAIEIY + D  Q  TDQDDV+AIM IK +Y + K
Sbjct: 324 QFPIIGGNNMFSLFKIEGSTLPPLLNAIEIYFVVDLSQSETDQDDVDAIMKIKSTYGITK 383

Query: 420 GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSN 479
            WQGDPC+P  Y W GLNCSY+   PP + SLNL+S GL G+I   ++NL+SLE LDLSN
Sbjct: 384 NWQGDPCAPQAYVWHGLNCSYSDDDPPTVKSLNLSSSGLRGEIVSEIANLRSLELLDLSN 443

Query: 480 NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
           NSL+GS+P+FLS++  L+VLNL GNKL+G++P  L  RSQ GSLLL + G
Sbjct: 444 NSLSGSLPDFLSRMTSLKVLNLTGNKLTGTIPADLFERSQQGSLLLSVSG 493

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442394|ref|XP_002276980.1| PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like [Vitis vinifera]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/470 (51%), Positives = 317/470 (67%), Gaps = 3/470 (0%)

Query: 60  DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRS 119
           D  G ISIDCG+  G  Y D  T + Y SD +FI TG NK+IS    S NL    ++VR+
Sbjct: 21  DQSGFISIDCGMAEGTDYNDATTSILYTSDAQFIDTGTNKSISPDLESENLPKYLSSVRA 80

Query: 120 FPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASH 179
           FPEG +NCY+ +  +G    YL R+ FMYG+YD +++ PEF LY+  + WDS+K +N+S 
Sbjct: 81  FPEGLKNCYTFKLVQGNK--YLIRSVFMYGNYDSKNQAPEFGLYLNADEWDSVKLENSSD 138

Query: 180 VVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGST 239
           VV+KEIIH    +  +VCL+NTG GTPFISALELR  ++  Y+TQS +LVL  RLD+GST
Sbjct: 139 VVVKEIIHVQETNYSHVCLVNTGLGTPFISALELRLLNSTIYKTQSASLVLATRLDIGST 198

Query: 240 TTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVND 299
           +   IRFKDD YDRIW PY        ++  +  D L  + + LP  VM TAV P N + 
Sbjct: 199 SNDTIRFKDDDYDRIWKPYTSSSWEL-VSLRYASDLLSANPFILPPRVMTTAVTPKNGSR 257

Query: 300 SLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISS 359
           SL+  ++  D T QFYVYMHFAE+E      YR F+I LNG+ W   +  +YL   T+ S
Sbjct: 258 SLELQYDPDDATKQFYVYMHFAEVEELGDGGYRNFTILLNGDFWYGPMSVQYLSPVTVYS 317

Query: 360 TQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK 419
                G+ L  SL + ++S  PPILNA+E+Y + + LQ PT+Q DV AI ++K  Y + +
Sbjct: 318 QYTVSGTSLELSLVQANDSKFPPILNAVELYWVKEFLQSPTEQSDVEAIRNVKSVYGVKR 377

Query: 420 GWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSN 479
            WQGDPC+P  + WDGL CSYNGY  P+IISL+L+S GL+GKI  SLSNL+SL+ LDLSN
Sbjct: 378 NWQGDPCAPKKHLWDGLECSYNGYNSPRIISLDLSSSGLSGKIDSSLSNLESLQYLDLSN 437

Query: 480 NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
           NSLTG +P+FLSQLPLL+ LNL GN+ +GSVP+ L+ RS+NGSL L + G
Sbjct: 438 NSLTGEVPDFLSQLPLLKTLNLSGNEFTGSVPSLLIQRSKNGSLSLSVDG 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549712|ref|XP_002515907.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis] gi|223544812|gb|EEF46327.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/471 (49%), Positives = 310/471 (65%), Gaps = 4/471 (0%)

Query: 60  DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRS 119
           D  G ISIDCG+PA   Y D  T L+Y SD  FI TG+  N++    ++++     +VRS
Sbjct: 28  DQSGFISIDCGLPANSSYTDATTGLNYVSDAAFIDTGIINNLAPGLNTSSIDRQQLSVRS 87

Query: 120 FPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASH 179
           FPEG+RNCY +    G    YL RA F+Y +YD   KLP FDL++G N+W ++K  NA+ 
Sbjct: 88  FPEGDRNCYQVELTRGTK--YLIRAIFLYRNYDGLSKLPHFDLHLGPNKWITVKILNATI 145

Query: 180 VVIKEIIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRTQS-GALVLYRRLDVGS 238
            VI EII++ +++ I+VCL+NTG GTPFISALELR   N TY  +S GAL  + RLD GS
Sbjct: 146 PVITEIIYTPILNYIHVCLVNTGLGTPFISALELRPLKNTTYEIRSEGALAKFARLDFGS 205

Query: 239 TTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVN 298
            T + +R+ DD YDRIW P   +  +  ++T   ID+   + ++ PS VM TA  P N +
Sbjct: 206 VTNKTVRYPDDVYDRIWTPDHYYKWT-DLSTPETIDAQFHNDFQPPSIVMSTANVPTNAS 264

Query: 299 DSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTIS 358
           + + F  +  D +LQFY YMHFAE+   + NQ R+F+I LNG ++   V+P+YL + ++ 
Sbjct: 265 EDMQFFIDNEDTSLQFYFYMHFAEIVKLEANQSRQFNISLNGTIFFGPVIPDYLYTSSVY 324

Query: 359 STQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLG 418
           +  P       FSL K   STLPP+LNAIEIY   D  Q  TDQDDV+AI  IK +Y + 
Sbjct: 325 NGLPINAGSNVFSLFKIGGSTLPPLLNAIEIYFFVDLSQSQTDQDDVDAITKIKSTYGIT 384

Query: 419 KGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLS 478
           + WQGD C+P  Y W GLNCSY+   PPKI SLNL+S GLTG+I   ++NLKSLE LDLS
Sbjct: 385 RNWQGDACAPQAYVWQGLNCSYSDNDPPKITSLNLSSSGLTGEIVSDIANLKSLEFLDLS 444

Query: 479 NNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
           NNSL+G +P+FLSQ+P L+VLNL GNKL+G +P  L  R+Q GSLLL + G
Sbjct: 445 NNSLSGPVPDFLSQMPSLKVLNLTGNKLTGRIPVDLFERTQKGSLLLSVSG 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
TAIR|locus:2047675	881	AT2G19210 [Arabidopsis thalian	0.788	0.519	0.447	2.8e-120
TAIR|locus:2126540	876	AT4G29990 [Arabidopsis thalian	0.786	0.521	0.455	5.2e-119
TAIR|locus:2059093	876	FRK1 "FLG22-induced receptor-l	0.784	0.520	0.430	2.7e-109
TAIR|locus:2195850	890	AT1G51860 [Arabidopsis thalian	0.779	0.508	0.396	2.8e-101
TAIR|locus:2118344	863	AT4G29450 [Arabidopsis thalian	0.764	0.514	0.444	1.8e-99
TAIR|locus:2195855	876	AT1G51910 [Arabidopsis thalian	0.776	0.514	0.403	9.7e-99
TAIR|locus:2017572	882	AT1G51790 [Arabidopsis thalian	0.759	0.5	0.394	6.8e-98
TAIR|locus:2078176	878	MEE39 "maternal effect embryo	0.765	0.506	0.401	2.9e-97
TAIR|locus:2017557	894	IOS1 "IMPAIRED OOMYCETE SUSCEP	0.779	0.506	0.388	4.7e-97
TAIR|locus:2195830	837	AT1G51870 [Arabidopsis thalian	0.664	0.461	0.415	6.1e-94

TAIR|locus:2047675 AT2G19210 [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.8e-120, Sum P(2) = 2.8e-120
 Identities = 206/460 (44%), Positives = 282/460 (61%)

Query:    71 VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSL 130
             +P    Y DE T + Y SD  F+ +G   +I  +F +++L+  +  VRSFPEGNRNCY +
Sbjct:    38 IPEDSSYNDETTDIKYVSDAAFVESGTIHSIDPEFQTSSLEKQFQNVRSFPEGNRNCYDV 97

Query:   131 RPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSAL 190
             +PP+GK   YL R  FMYG+YD+  K P+FDLY+G N WDS+  DNA+ +V KEIIH+  
Sbjct:    98 KPPQGKGFKYLIRTRFMYGNYDNLGKAPDFDLYLGFNIWDSVTIDNATTIVTKEIIHTLR 157

Query:   191 MDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDH 250
              D ++VCL++  +GTPF+SALE+R   + TY T   +L+L++R D+G      +R+KDD 
Sbjct:   158 SDHVHVCLVDKNRGTPFLSALEIRLLKSNTYETPYDSLILFKRWDLGGLGALPVRYKDDV 217

Query:   251 YDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDP 310
             +DRIW+P   FP     N S  IDS  +  ++    VM TA  P +++  + F +E  DP
Sbjct:   218 FDRIWIPLR-FPKYTIFNASLTIDSNNNEGFQPARFVMNTATSPEDLSQDIIFSWEPKDP 276

Query:   311 TLQFYVYMHFAELESRQGNQYREFSIELNGN-LWEKSVVPEYLQSKTISSTQPARGSKLN 369
             T +++VYMHFAE+     N+ REF + LN   +   S  P YL + T+    P  G KL 
Sbjct:   277 TWKYFVYMHFAEVVELPSNETREFKVLLNEKEINMSSFSPRYLYTDTLFVQNPVSGPKLE 336

Query:   370 FSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPM 429
             F L +T  STLPPI+NAIE Y + + LQ PTDQ DV+AIM IK  Y + K W GDPC+P+
Sbjct:   337 FRLQQTPRSTLPPIINAIETYRVNEFLQSPTDQQDVDAIMRIKSKYGVKKSWLGDPCAPV 396

Query:   430 YYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGSIPEF 489
              Y W  +NCSY   + P+IIS+NL+S GLTG+I                    TG IP+F
Sbjct:   397 KYPWKDINCSYVDNESPRIISVNLSSSGLTGEIDAAFSNLTLLHILDLSNNSLTGKIPDF 456

Query:   490 LSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
             L  L  L  LNL+GNKLSG++P  L+ RS    +LLRI G
Sbjct:   457 LGNLHNLTELNLEGNKLSGAIPVKLLERSNKKLILLRIDG 496

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126540 AT4G29990 [Arabidopsis thaliana (taxid:3702)]

 Score = 1039 (370.8 bits), Expect = 5.2e-119, Sum P(2) = 5.2e-119
 Identities = 210/461 (45%), Positives = 286/461 (62%)

Query:    71 VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSL 130
             +P    Y DEKT + Y SD  F+ +G + +I S   + +L+  +  VRSFPEG RNCY +
Sbjct:    34 IPDDSSYTDEKTNMKYVSDLGFVESGTSHSIVSDLQTTSLERQFQNVRSFPEGKRNCYDI 93

Query:   131 RPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSAL 190
             RP +GK   YL R  FMYG+YD   K PEFDLYIG N W+S+   N + ++ KEII++  
Sbjct:    94 RPQQGKGFKYLIRTRFMYGNYDGFSKTPEFDLYIGANLWESVVLINETAIMTKEIIYTPP 153

Query:   191 MDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDH 250
              D I+VCL++  +GTPF+S LE+R   N TY T   AL+L RR D G+ T   IR+KDD 
Sbjct:   154 SDHIHVCLVDKNRGTPFLSVLEIRFLKNDTYDTPYEALMLGRRWDFGTATNLQIRYKDDF 213

Query:   251 YDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDP 310
             YDRIW+PY   P   ++NTS  ID    + +R  S VM++A+ P N ++ L F++   DP
Sbjct:   214 YDRIWMPYKS-PYQKTLNTSLTIDETNHNGFRPASIVMRSAIAPGNESNPLKFNWAPDDP 272

Query:   311 TLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLN- 369
               +FY+YMHFAE+   Q N+ REF I +N  +  ++  P YL + T S+  P  G K+N 
Sbjct:   273 RSKFYIYMHFAEVRELQRNETREFDIYINDVILAENFRPFYLFTDTRSTVDPV-GRKMNE 331

Query:   370 FSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPM 429
               L +T  STLPPI+NAIEIY + + LQ PTDQ DV+A+  IK  Y + K WQGDPC P+
Sbjct:   332 IVLQRTGVSTLPPIINAIEIYQINEFLQLPTDQQDVDAMTKIKFKYRVKKNWQGDPCVPV 391

Query:   430 YYSWDGLNCSYNGYKP-PKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGSIPE 488
               SW+GL C ++     PK I+LNL+S GLTG+I                    TG +P+
Sbjct:   392 DNSWEGLECLHSDNNTSPKSIALNLSSSGLTGQIDPAFANLTSINKLDLSNNSLTGKVPD 451

Query:   489 FLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
             FL+ LP L  LNL+GNKL+GS+P  L+ +S++GSL LR  G
Sbjct:   452 FLASLPNLTELNLEGNKLTGSIPAKLLEKSKDGSLSLRFGG 492

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2059093 FRK1 "FLG22-induced receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 958 (342.3 bits), Expect = 2.7e-109, Sum P(2) = 2.7e-109
 Identities = 197/458 (43%), Positives = 266/458 (58%)

Query:    71 VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSL 130
             +P    Y DE T + Y SD  F+ +G  K I+++F S+        VRSFP+  R+CY +
Sbjct:    37 IPDDSSYNDETTGIKYVSDSAFVDSGTTKRIAAQFQSSGFDRHLLNVRSFPQSKRSCYDV 96

Query:   131 RPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSAL 190
               P GK   YL R  FMYG+YDD  ++PEFDLY+GVN WDS+K D+A+ ++ KEII   L
Sbjct:    97 PTPRGKGFKYLIRTRFMYGNYDDLGRVPEFDLYLGVNFWDSVKLDDATTILNKEIITIPL 156

Query:   191 MDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDH 250
             +D + VC+++   GTPF+S LE+R   N TY T   AL L RRLD   T     R+KDD 
Sbjct:   157 LDNVQVCVVDKNAGTPFLSVLEIRLLLNTTYETPYDALTLLRRLDYSKTGKLPSRYKDDI 216

Query:   251 YDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDP 310
             YDRIW P         +NTS  +D  +++ Y+  S VM TA    N +  L   F   DP
Sbjct:   217 YDRIWTPRIVSSEYKILNTSLTVDQFLNNGYQPASTVMSTAETARNESLYLTLSFRPPDP 276

Query:   311 TLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNF 370
               +FYVYMHFAE+E  + NQ REFSI LN ++   S    YL + T  +  P  G  +NF
Sbjct:   277 NAKFYVYMHFAEIEVLKSNQTREFSIWLNEDVISPSFKLRYLLTDTFVTPDPVSGITINF 336

Query:   371 SLCKTSNS-TLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPM 429
             SL +      LPPI+NA+E+Y + + LQ PT   DV+A+  IK +Y + K WQGDPC P+
Sbjct:   337 SLLQPPGEFVLPPIINALEVYQVNEFLQIPTHPQDVDAMRKIKATYRVKKNWQGDPCVPV 396

Query:   430 YYSWDGLNC-SYNGYKPPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGSIPE 488
              YSW+G++C   +    P+++SLN++   L G+I                    TG IP 
Sbjct:   397 DYSWEGIDCIQSDNTTNPRVVSLNISFSELRGQIDPAFSNLTSIRKLDLSGNTLTGEIPA 456

Query:   489 FLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLR 526
             FL+ LP L  LN++GNKL+G VP  L  RS+NGSL LR
Sbjct:   457 FLANLPNLTELNVEGNKLTGIVPQRLHERSKNGSLSLR 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=RCA;IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2195850 AT1G51860 [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 2.8e-101, Sum P(2) = 2.8e-101
 Identities = 185/467 (39%), Positives = 274/467 (58%)

Query:    71 VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSL 130
             VP    Y ++ T ++YKSD ++I +G+   I+  + +   Q  +A VRSFP G RNCY++
Sbjct:    37 VPKETTYTEKSTNITYKSDVDYIDSGLVGKINDAYKTQFQQQVWA-VRSFPVGQRNCYNV 95

Query:   131 RPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSAL 190
                      YL R +F+YG+YD  ++ P FDL+IG N+W S+K    ++  + EIIH   
Sbjct:    96 NLTANNK--YLIRGTFVYGNYDGLNQFPSFDLHIGPNKWSSVKILGVTNTSMHEIIHVVP 153

Query:   191 MDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDH 250
              D + VCL+ TG  TPFIS+LE+R  +N +Y TQSG+L+L+ R+   S+++  IR+ +D 
Sbjct:   154 QDSLEVCLVKTGPTTPFISSLEVRPLNNESYLTQSGSLMLFARVYFPSSSSSFIRYDEDI 213

Query:   251 YDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDP 310
             +DR+W  +     +  I+T   ID+   + Y +P +VMKTA  P N ++     + + + 
Sbjct:   214 HDRVWNSFTD-DETVWISTDLPIDT--SNSYDMPQSVMKTAAVPKNASEPWLLWWTLDEN 270

Query:   311 TLQFYVYMHFAELESRQGNQYREFSIELNGNL-WEKSVVPEYLQSKTISSTQPARGSK-- 367
             T Q YVYMHFAE+++   N+ REF+I  NG L W   + P  L   TI + +    S   
Sbjct:   271 TAQSYVYMHFAEVQNLTANETREFNITYNGGLRWFSYLRPPNLSISTIFNPRAVSSSNGI 330

Query:   368 LNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK--GWQGDP 425
              NF+   T NSTLPP+LNA+EIY + D LQ  T++D+V+A+M+IK +Y L K   WQGDP
Sbjct:   331 FNFTFAMTGNSTLPPLLNALEIYTVVDILQLETNKDEVSAMMNIKETYGLSKKISWQGDP 390

Query:   426 CSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGS 485
             C+P  Y W+GLNCSY   +  +IISLNL    LTG I                    +G 
Sbjct:   391 CAPQLYRWEGLNCSYPDSEGSRIISLNLNGSELTGSITSDISKLTLLTVLDLSNNDLSGD 450

Query:   486 IPEFLSQLPLLRVLNLDGN-KLS-GSVPTSLVARSQNGSLLLRILGK 530
             IP F +++  L+++NL GN  L+  ++P SL  R  + SL L ILG+
Sbjct:   451 IPTFFAEMKSLKLINLSGNPNLNLTAIPDSLQQRVNSKSLTL-ILGE 496

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2118344 AT4G29450 [Arabidopsis thaliana (taxid:3702)]

 Score = 901 (322.2 bits), Expect = 1.8e-99, Sum P(2) = 1.8e-99
 Identities = 202/454 (44%), Positives = 270/454 (59%)

Query:    79 DEKTQLSYKSDEEFIRTGVNKNISSKF-MSAN--LQNTYATVRSFPEGNRNCYSLRPPEG 135
             D  T ++Y SDE FI TGVN  +S ++    N  L +T A VR+FP+GNRNCY+L+  +G
Sbjct:    42 DTMTNINYVSDEAFITTGVNFKVSEEYGYPKNPVLLSTLAEVRAFPQGNRNCYTLKLSQG 101

Query:   136 KAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEIN 195
             K   YL RASFMYG+YD +  LPEFDLY+ VN W ++KF NAS  V KEI+  A  D I 
Sbjct:   102 KDHLYLIRASFMYGNYDGKKALPEFDLYVNVNFWSTVKFKNASDQVTKEILSFAESDTIY 161

Query:   196 VCLLNTGKGTPFISALELRHFHNATYRTQSG---ALVLYRRLDVGSTTTQIIRFKDDHYD 252
             VCL+N GKGTPFIS LELR  +++ Y T+ G   +LVLYRR D+G       R++DD +D
Sbjct:   162 VCLVNKGKGTPFISGLELRPVNSSIYGTEFGRNVSLVLYRRWDIGYLNGTG-RYQDDRFD 220

Query:   253 RIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTL 312
             RIW PY       SI TS  ID +  + Y  P  V+KTA  P NV+D L+  +   DP +
Sbjct:   221 RIWSPYSSNISWNSIITSGYID-VFQNGYCPPDEVIKTAAAPENVDDPLELFWTSDDPNV 279

Query:   313 QFYVYMHFAELESRQGNQYREFSIELNGN-LWEKSVVPEYLQSKTISSTQPARGSKLNFS 371
             +FY Y++FAELE+ + N+ R+  I  NG+ + E S  P    S T S+ +   G     S
Sbjct:   280 RFYAYLYFAELETLEKNETRKIKILWNGSPVSETSFEPSSKYSTTFSNPRAFTGKDHWIS 339

Query:   372 LCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYY 431
             + KT +STLPPILNAIEI+      +  T  +D++AI  IK +Y + K W GDPCSP  +
Sbjct:   340 IQKTVDSTLPPILNAIEIFTAQSLDEFSTTIEDIHAIESIKATYKVNKVWSGDPCSPRLF 399

Query:   432 SWDGLNCSYNGYKPPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGSIPEFLS 491
              W+G+ CS N     +I SLNL+S GL G I                      ++PEFL+
Sbjct:   400 PWEGVGCSDNNNNH-QIKSLNLSSSGLLGPIVLAFRNLSLLESLDLSNNDLQQNVPEFLA 458

Query:   492 QLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLL 525
              L  L+VLNL GN  +G +P SL+ + + G L L
Sbjct:   459 DLKHLKVLNLKGNNFTGFIPKSLMKKLKAGLLTL 492

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2195855 AT1G51910 [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
 Identities = 187/463 (40%), Positives = 274/463 (59%)

Query:    71 VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSL 130
             +P    Y ++ T ++Y SD ++I +G+ + IS  + S   Q T+ T+RSFPEG RNCY+ 
Sbjct:    37 IPKDTTYTEQITNITYISDADYIDSGLTERISDSYKSQLQQQTW-TLRSFPEGQRNCYNF 95

Query:   131 RPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSAL 190
                +   K YL R +F+YG+YD  +++P+FDL+IG N+W S+  +  ++  I EIIH   
Sbjct:    96 NL-KANLK-YLIRGTFVYGNYDGLNQMPKFDLHIGPNKWTSVILEGVANATIFEIIHVLT 153

Query:   191 MDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDH 250
              D + VCL+ TG+ TPFIS+LELR  +N TY TQ G+L+ + R+    T    +R+ DD 
Sbjct:   154 QDRLQVCLVKTGQTTPFISSLELRPLNNDTYVTQGGSLMSFARIYFPKTA-YFLRYSDDL 212

Query:   251 YDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDP 310
             YDR+WVP+     + S++T+  +D+  +S Y +P  V  +A+ P      L+  +++ + 
Sbjct:   213 YDRVWVPFSQNE-TVSLSTNLPVDTSSNS-YNVPQNVANSAIIPAEATHPLNIWWDLQNI 270

Query:   311 TLQFYVYMHFAELESRQGNQYREFSIELNGN-LWEKSVVPEYLQSKTISSTQPARGSK-- 367
                 YVYMHFAE+++ + N  REF+I  NG  +WE S+ P  L   TISS      S   
Sbjct:   271 NAPSYVYMHFAEIQNLKANDIREFNITYNGGQVWESSIRPHNLSITTISSPTALNSSDGF 330

Query:   368 LNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK--GWQGDP 425
              NF+   T+ STLPP++NA+E+Y L + L   T QD+V+A+M+IK +Y L K   WQGDP
Sbjct:   331 FNFTFTMTTTSTLPPLINALEVYTLVENLLLETYQDEVSAMMNIKKTYGLSKKISWQGDP 390

Query:   426 CSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGS 485
             CSP  Y W+GLNC Y     P I SLNL + GLTG I                    +G 
Sbjct:   391 CSPQIYRWEGLNCLYLDSDQPLITSLNLRTSGLTGIITHDISNLIQLRELDLSDNDLSGE 450

Query:   486 IPEFLSQLPLLRVLNLDGN-KLSGSVPTSLVARSQNGSLLLRI 527
             IP+FL+ + +L ++NL GN KL+ +VP S+  R  N SL L I
Sbjct:   451 IPDFLADMKMLTLVNLKGNPKLNLTVPDSIKHRINNKSLKLII 493

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2017572 AT1G51790 [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 6.8e-98, Sum P(2) = 6.8e-98
 Identities = 178/451 (39%), Positives = 273/451 (60%)

Query:    72 PAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLR 131
             P    Y +  T + Y SD  +  TG +  ++ +    N++ +  +VRSFPEG RNCY++ 
Sbjct:    38 PENSSYTETSTDIKYVSDSSYTDTGTSYFVAPENRQ-NMKQSMWSVRSFPEGIRNCYTIA 96

Query:   132 PPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALM 191
                  +  YL RA FMYG+YD  +++P FDL++G N+WD+++  +    V KEII+  L 
Sbjct:    97 V--NSSTKYLIRADFMYGNYDSRNEIPGFDLHLGPNKWDTVELVSPLQTVSKEIIYYVLT 154

Query:   192 DEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHY 251
             D I VCL+NTG GTPFIS LELR   N++Y  QS +L L++RLD GSTT   +R+ +D +
Sbjct:   155 DTIQVCLVNTGNGTPFISVLELRQLPNSSYAAQSESLQLFQRLDFGSTTNLTVRYPNDVF 214

Query:   252 DRIWVPYPGFP-GSASINT-SFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGD 309
             DRIW  +P  P G+  ++  S  + S     +RLP  VM+T + P N    +DF +   D
Sbjct:   215 DRIW--FPATPNGTKPLSDPSTSLTSNSTGNFRLPQVVMRTGIVPDNPRGFVDFGWIPDD 272

Query:   310 PTLQFYVYMHFAELES-RQGN-QYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSK 367
             P+L+F+ Y++F EL+    G  + REF I LNG  + + +   Y ++  + ++ P +   
Sbjct:   273 PSLEFFFYLYFTELQQPNSGTVETREFVILLNGKSFGEPLSLNYFRTLALFTSNPLKAES 332

Query:   368 LNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCS 427
               FSL +T +S+LPP++NA+E Y +    Q  TD +D++A+ +IK +Y + + W+GD C 
Sbjct:   333 FQFSLRQTQSSSLPPLINAMETYFVNKLPQSSTDPNDLSAMRNIKSAYKVKRNWEGDVCV 392

Query:   428 PMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTG-SI 486
             P  Y+W+GLNCS+NG   P++I+LNL+S GLTG+I                    +G ++
Sbjct:   393 PQAYTWEGLNCSFNGTNMPRVIALNLSSAGLTGEITSDISRLSQLQILDLSNNNLSGPAV 452

Query:   487 PEFLSQLPLLRVLNLDGNKLSGSVPTSLVAR 517
             P FL+QL  LRVL+L  N+LSG +P+SL+ R
Sbjct:   453 PAFLAQLQFLRVLHLANNQLSGPIPSSLIER 483

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2078176 MEE39 "maternal effect embryo arrest 39" [Arabidopsis thaliana (taxid:3702)]

 Score = 848 (303.6 bits), Expect = 2.9e-97, Sum P(2) = 2.9e-97
 Identities = 184/458 (40%), Positives = 263/458 (57%)

Query:    77 YLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGK 136
             Y++ +T + + SDE FI++G    I     S NL+  YAT+R FP+G RNCY LR  EG+
Sbjct:    45 YIESETGIQFSSDENFIQSGKTGRIPKNLESENLKQ-YATLRYFPDGIRNCYDLRVEEGR 103

Query:   137 AKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINV 196
                YL RA+F YG++D  +  PEFD++IG N+W +I         +KEIIH    + + +
Sbjct:   104 --NYLIRATFFYGNFDGLNVSPEFDMHIGPNKWTTIDLQIVPDGTVKEIIHIPRSNSLQI 161

Query:   197 CLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWV 256
             CL+ TG   P ISALELR   N TY  +SG+L  Y R+ + S  T ++R+  D YDR WV
Sbjct:   162 CLVKTGATIPMISALELRPLANDTYIAKSGSLKYYFRMYL-SNATVLLRYPKDVYDRSWV 220

Query:   257 PYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYV 316
             PY   P    I+T+  + +   + Y  P   +K A  P N++ +L   + + +P  Q Y+
Sbjct:   221 PYIQ-PEWNQISTTSNVSN--KNHYDPPQVALKMAATPTNLDAALTMVWRLENPDDQIYL 277

Query:   317 YMHFAELESRQGNQYREFSIELNGN-LWEKSVVPEYLQSKTISSTQPAR--GSKLNFSLC 373
             YMHF+E++  + N  REF I LNG  +  + V P+YL+  T  +T P +  G      L 
Sbjct:   278 YMHFSEIQVLKANDTREFDIILNGETINTRGVTPKYLEIMTWLTTNPRQCNGGICRMQLT 337

Query:   374 KTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK-GWQGDPCSPMYYS 432
             KT  STLPP+LNA E+Y +    Q  T++ +V AI +I+ +Y L +  WQGDPC P  + 
Sbjct:   338 KTQKSTLPPLLNAFEVYSVLQLPQSQTNEIEVVAIKNIRTTYGLSRISWQGDPCVPKQFL 397

Query:   433 WDGLNCSYNGYK-PPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGSIPEFLS 491
             WDGLNC+      PP+IISLNL+S GL+G I                    +G +PEFL+
Sbjct:   398 WDGLNCNITDISAPPRIISLNLSSSGLSGTIVSNFQNLAHLESLDLSNNSLSGIVPEFLA 457

Query:   492 QLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILG 529
              +  L V+NL GNKLSG++P +L  R + G L L +LG
Sbjct:   458 TMKSLLVINLSGNKLSGAIPQALRDREREG-LKLNVLG 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2017557 IOS1 "IMPAIRED OOMYCETE SUSCEPTIBILITY 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 856 (306.4 bits), Expect = 4.7e-97, Sum P(2) = 4.7e-97
 Identities = 181/466 (38%), Positives = 274/466 (58%)

Query:    72 PAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSLR 131
             P    + ++ T ++Y SD  FI TGV  +I   + +   Q T+  +RSFP+G RNCY+L 
Sbjct:    37 PRETSFREKTTNITYISDANFINTGVGGSIKQGYRTQFQQQTW-NLRSFPQGIRNCYTLN 95

Query:   132 PPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALM 191
                G    YL RA+F++G YDD+    +F+LY+G N W ++   N +   I E+IH    
Sbjct:    96 LTIGDE--YLIRANFLHGGYDDKPST-QFELYLGPNLWSTVTTTNETEASIFEMIHILTT 152

Query:   192 DEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHY 251
             D + +CL+ TG  TPFISALELR   N TY T+ G+L  + R DVG+T  Q  R+  D +
Sbjct:   153 DRLQICLVKTGNATPFISALELRKLMNTTYLTRQGSLQTFIRADVGATVNQGYRYGIDVF 212

Query:   252 DRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPT 311
             DR+W PY  F   + I+T+  ++  +++ Y+ P   M TA  P + + +++      + T
Sbjct:   213 DRVWTPY-NFGNWSQISTNQSVN--INNDYQPPEIAMVTASVPTDPDAAMNISLVGVERT 269

Query:   312 LQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVP-EYLQSKTISSTQ---PARGSK 367
             +QFYV+MHFAE++  + N  REF+I  N         P  +  S   + T+    A G  
Sbjct:   270 VQFYVFMHFAEIQELKSNDTREFNIMYNNKHIYGPFRPLNFTTSSVFTPTEVVADANGQY 329

Query:   368 LNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK-GWQGDPC 426
             + FSL +T NSTLPP+LNA+EIY +    Q+ TD+ +V+A+M+IK +Y + K  W+GDPC
Sbjct:   330 I-FSLQRTGNSTLPPLLNAMEIYSVNLLPQQETDRKEVDAMMNIKSAYGVNKIDWEGDPC 388

Query:   427 SPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKIXXXXXXXXXXXXXXXXXXXXTGSI 486
              P+ Y W G+NC+Y   + PKIISL+L++ GLTG+I                    TGS+
Sbjct:   389 VPLDYKWSGVNCTYVDNETPKIISLDLSTSGLTGEILEFISDLTSLEVLDLSNNSLTGSV 448

Query:   487 PEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGG 532
             PEFL+ +  L+++NL GN+L+GS+P +L+ + + GS+ L I G  G
Sbjct:   449 PEFLANMETLKLINLSGNELNGSIPATLLDKERRGSITLSIEGNTG 494

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2195830 AT1G51870 [Arabidopsis thaliana (taxid:3702)]

 Score = 774 (277.5 bits), Expect = 6.1e-94, Sum P(3) = 6.1e-94
 Identities = 165/397 (41%), Positives = 234/397 (58%)

Query:    71 VPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRNCYSL 130
             VP    Y++  T ++YKSD  +  +G+   I+    +   Q  +A +RSFPEG RNCY+ 
Sbjct:    37 VPKETTYVETSTNITYKSDANYTDSGLVGKINDAHKTLVQQPLWA-LRSFPEGERNCYNF 95

Query:   131 RPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSAL 190
                     TYL R +F+YG+YD  ++ P FDL+IG ++W S+     +  V+ EIIH   
Sbjct:    96 NLTVNS--TYLIRGTFLYGNYDGLNQSPSFDLHIGASKWTSVNIVGVTDTVMPEIIHVLT 153

Query:   191 MDEINVCLLNTGKGTPFISALELRHFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDH 250
                + VCL+ TGK TPFIS+LELR   N  Y  +SG++VL  R+   S +T I+R+ +D 
Sbjct:   154 QKRLQVCLVKTGKTTPFISSLELRPLINNIYIAESGSMVLQNRVYFPSDSTSIVRYDEDI 213

Query:   251 YDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDP 310
             +DR+W P      S+SI+T   + +  ++ Y +P  VMKTA  P + +      + I + 
Sbjct:   214 HDRVWNPVSD-DDSSSISTDLQVQT--NNLYDVPQFVMKTAAIPKDASAPWSLVWTIDNT 270

Query:   311 TLQFYVYMHFAELESRQGNQYREFSIELNGN-LWEKSVVPEYLQSKTISSTQPARGS--K 367
             T   YVYMHFAE++  + N  REF I  NG  LW     P  L   T+ S  P   S  +
Sbjct:   271 TALSYVYMHFAEIQDLKANDLREFDITYNGGKLWFSQFRPNKLSILTMFSQVPLTSSNGE 330

Query:   368 LNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGK--GWQGDP 425
              NF+   TSNSTLPP++NA+EIY   + LQ  TD+D+V+A+M+IK +YDL K   WQGDP
Sbjct:   331 YNFTFEMTSNSTLPPLINALEIYTGLEILQLQTDKDEVSAMMNIKTTYDLSKKISWQGDP 390

Query:   426 CSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKI 462
             C+P  Y W+GL+CSY   +  +IISLNL + GL G I
Sbjct:   391 CAPQLYRWEGLDCSYPDTEASRIISLNLNASGLNGTI 427

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034256001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (770 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	581
pfam12819	335	pfam12819, Malectin_like, Carbohydrate-binding pro	1e-119
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-45
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	2e-05
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-05
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-04
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	0.003
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	0.004
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	0.004

>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER

 Score =  355 bits (913), Expect = e-119
 Identities = 151/337 (44%), Positives = 206/337 (61%), Gaps = 17/337 (5%)

Query: 67  IDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFPEGNRN 126
           IDCG+P+   Y D  T +++ SD  FI TG + NIS +  S+ L   Y T+RSFP+G RN
Sbjct: 1   IDCGLPSNESYTDPSTGITWVSDAGFIDTGKSGNISKENSSSFLSKPYKTLRSFPDGKRN 60

Query: 127 CYSLRPPEGKAKTYLTRASFMYGDYDDEDKL---PEFDLYIGVNRWDSIKFDNAS-HVVI 182
           CY+L    GK   YL RA+F+YG+YD  + +   P FDLY+GVN W ++   N S   V+
Sbjct: 61  CYTLPVTPGKGTKYLIRATFLYGNYDGLNSVSSPPSFDLYLGVNLWTTVNLSNDSGDSVV 120

Query: 183 KE-IIHSALMDEINVCLLNTGKGTPFISALELRHFHNATYRT--QSGALVLYRRLDVGST 239
           KE IIH    D ++VCL+NTG GTPFISALELR   ++ Y +   S AL L  RL+ G  
Sbjct: 121 KEYIIHVTKSDTLSVCLVNTGTGTPFISALELRPLPDSLYPSSGGSQALKLVARLNFGG- 179

Query: 240 TTQIIRFKDDHYDRIWVPYPGFPGSASINTSF-IIDSLVDSQYRLPSAVMKTAVKPMNVN 298
           +   IR+ DD YDRIW P+   PG + I+TS  +  S  ++ Y  PSAV++TAV P N +
Sbjct: 180 SEGTIRYPDDVYDRIWEPFFSSPGWSQISTSLSVDISSNNAPYIPPSAVLQTAVTPTNAS 239

Query: 299 DSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTIS 358
             L+F +++ DP  ++YVY+HFAE++S    + REF I +NG      V P+YL + T +
Sbjct: 240 APLNFTWDLVDPNFEYYVYLHFAEIQS---LETREFDIYINGKTVYGDVSPKYLGTDTGA 296

Query: 359 STQPA-----RGSKLNFSLCKTSNSTLPPILNAIEIY 390
                      G  LN SL  TS STLPP+LNA+EI+
Sbjct: 297 LYLDFPVNVSGGGLLNISLVPTSGSTLPPLLNALEIF 333

Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. Length = 335

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score =  169 bits (430), Expect = 2e-45
 Identities = 132/452 (29%), Positives = 209/452 (46%), Gaps = 59/452 (13%)

Query: 116 TVRSFP--EGNRNCYSL-RPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSI 172
           T+R FP  +G  NCY++ R P+G    Y  R  F      + D  P FD+ +   +  S+
Sbjct: 71  TLRYFPLSDGPENCYNINRVPKGH---YSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSL 127

Query: 173 KFDNASH---VVIKEIIHSALMD-EINVCLLNTGKGTPFISALELRHFHNATYRTQSGA- 227
           K   +SH   V  + ++   L D   ++C  +TG G P I ++E+    +  Y       
Sbjct: 128 KSGWSSHDEQVFAEALVF--LTDGSASICFHSTGHGDPAILSIEILQVDDKAYNFGPSWG 185

Query: 228 ----LVLYRRLDVGSTTTQI-IRFKDDHY--DRIWVPYPGFPGSA--SINTSFIIDSLVD 278
               L   +RL  G+  ++    +  DH+  DR W     F   +  +I+T  +I    +
Sbjct: 186 QGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASN 245

Query: 279 SQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELE-SRQGNQYREFSIE 337
           +    P ++ ++A+   +    L +  ++ DP   + V++HFAE++ S      R F + 
Sbjct: 246 APNFYPESLYQSALVSTDTQPDLSYTMDV-DPNRNYSVWLHFAEIDNSITAEGKRVFDVL 304

Query: 338 LNGNLWEKSV-----VPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYIL 392
           +NG+   K V       E   +  ++ T    G  L   L     +    I+NAIE++ +
Sbjct: 305 INGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTH--AIINAIEVFEI 362

Query: 393 TDTLQEPTDQDDVNAIMDIK--LSYDLGKGWQGDPCSPMYYSWDGLNCSYN--------- 441
             T +  T  ++V+A+  +K  L   L  GW GDPC P  + W G +C ++         
Sbjct: 363 I-TAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKGKWFID 421

Query: 442 ----------GYKPPKII------SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGS 485
                     G+ P  I       S+NL+   + G I PSL ++ SLE LDLS NS  GS
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 486 IPEFLSQLPLLRVLNLDGNKLSGSVPTSLVAR 517
           IPE L QL  LR+LNL+GN LSG VP +L  R
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 29/69 (42%), Positives = 46/69 (66%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            +++ L L+   L+G+I   LS+ K L +LDLS+N L+G IP   S++P+L  L+L  N+
Sbjct: 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Query: 506 LSGSVPTSL 514
           LSG +P +L
Sbjct: 559 LSGEIPKNL 567

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           K+ISL+L+   L+G+I   +  L++LE L L +N+ TG IP  L+ LP L+VL L  NK 
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 507 SGSVPTSL 514
           SG +P +L
Sbjct: 345 SGEIPKNL 352

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 458 LTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           L+G I PS+ +L+ L +LDLS+NSL+G IPE + QL  L +L+L  N  +G +P +L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 1e-08
 Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 5/80 (6%)

Query: 433 WDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQ 492
           W G+ C+       +++S++L+ + ++GKIS ++  L  ++ ++LSNN L+G IP+ +  
Sbjct: 60  WQGITCN----NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT 115

Query: 493 LPL-LRVLNLDGNKLSGSVP 511
               LR LNL  N  +GS+P
Sbjct: 116 TSSSLRYLNLSNNNFTGSIP 135

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 29/64 (45%), Positives = 38/64 (59%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L+L    L GKI  SL+NL SLE L L++N L G IP  L Q+  L+ + L  N LSG +
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 511 PTSL 514
           P  +
Sbjct: 229 PYEI 232

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 31/65 (47%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 451 LNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS 509
           LNL++   TG I   S+ NL   E LDLSNN L+G IP  +     L+VL+L GN L G 
Sbjct: 123 LNLSNNNFTGSIPRGSIPNL---ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 510 VPTSL 514
           +P SL
Sbjct: 180 IPNSL 184

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L+L    LTG I  SL NLK+L+ L L  N L+G IP  +  L  L  L+L  N LSG +
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300

Query: 511 PTSLVARSQNGSLL 524
           P  LV + QN  +L
Sbjct: 301 P-ELVIQLQNLEIL 313

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 5e-07
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           K++SL+L+   L+G+I  S S +  L  LDLS N L+G IP+ L  +  L  +N+  N L
Sbjct: 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 507 SGSVPTS 513
            GS+P++
Sbjct: 584 HGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P +  L+L      G + P     K LENLDLS N  +G++P  L  L  L  L L  NK
Sbjct: 452 PSLQMLSLARNKFFGGL-PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 506 LSGSVPTSL 514
           LSG +P  L
Sbjct: 511 LSGEIPDEL 519

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 26/57 (45%), Positives = 34/57 (59%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           SL+L++  LT     +   L +L+ LDLS N+LT   PE  S LP LR L+L GN L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L L S  L G+I  SL   +SL  + L +NS +G +P   ++LPL+  L++  N L G +
Sbjct: 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444

Query: 511 PT 512
            +
Sbjct: 445 NS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           ++ +L+L+    +G +   L +L  L  L LS N L+G IP+ LS    L  L+L  N+L
Sbjct: 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Query: 507 SGSVPTS 513
           SG +P S
Sbjct: 536 SGQIPAS 542

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L+L S   TGKI  +L++L  L+ L L +N  +G IP+ L +   L VL+L  N L+G +
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 511 PTSL 514
           P  L
Sbjct: 373 PEGL 376

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query: 458 LTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           L+G+I   +  L SL +LDL  N+LTG IP  L  L  L+ L L  NKLSG +P S+
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI 280

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 30/71 (42%), Positives = 38/71 (53%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P++  L L S   +G+I  +L    +L  LDLS N+LTG IPE L     L  L L  N 
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 506 LSGSVPTSLVA 516
           L G +P SL A
Sbjct: 392 LEGEIPKSLGA 402

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 26/64 (40%), Positives = 37/64 (57%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L L S  L G+I   L  +KSL+ + L  N+L+G IP  +  L  L  L+L  N L+G +
Sbjct: 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252

Query: 511 PTSL 514
           P+SL
Sbjct: 253 PSSL 256

Length = 968

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 470 KSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            +LE LDLSNN +T  +P  LS LP L  L+L GNK++
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGS-----EVAIKMLSASSS-QGPKQFRTEVEL 569
           L + LG+G FG VY G L         EVA+K L   +S Q  ++F  E  +
Sbjct: 3   LGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARI 54

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 45.2 bits (108), Expect = 4e-05
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGS-----EVAIKMLSASSS-QGPKQFRTEVEL 569
           L + LG+G FG VY G L         EVA+K L   +S Q  ++F  E  +
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARI 54

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.6 bits (108), Expect = 8e-05
 Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 444 KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
           K P +  L++++  L G+I+    ++ SL+ L L+ N   G +P+       L  L+L  
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSR 484

Query: 504 NKLSGSVPTSLVARSQ 519
           N+ SG+VP  L + S+
Sbjct: 485 NQFSGAVPRKLGSLSE 500

Length = 968

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASS--SQGPKQFRTEVEL 569
           LLR LG G FGTVY       G  VA+K+L   S  S+  +  R E+ +
Sbjct: 3   LLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRI 51

Length = 260

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 9e-05
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 471 SLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLV 515
           +L++LDLSNN LT         LP L+VL+L GN L+   P +  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFS 45

Length = 60

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE-----VAIKMLSASSSQGPKQ-FRTEVEL 569
           L + LG+G FG VY G L    E     VA+K L   +S+  ++ F  E  +
Sbjct: 3   LGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASI 54

Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASS-SQGPKQFRTEVEL 569
           +L  LG+G FG VY       G  VAIK++      +  ++   E+++
Sbjct: 3   ILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKI 50

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 34/61 (55%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L+L++  LTG+I   L +  +L  L L +NSL G IP+ L     LR + L  N  SG +
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420

Query: 511 P 511
           P
Sbjct: 421 P 421

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 20/61 (32%), Positives = 32/61 (52%)

Query: 453 LTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT 512
           L     +G++    + L  +  LD+SNN+L G I      +P L++L+L  NK  G +P 
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Query: 513 S 513
           S
Sbjct: 471 S 471

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 461 KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            +   L NL +L+NLDLS N L+  +P+ LS L  L  L+L GNK+S
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 452 NLTSEGLTGKISPSLSNLKSLENLDLSNNSLT----GSIPEFLSQLPLLRVLNLDGNKLS 507
            +   G+   ++  L    +LE LDL+NN LT     ++ E L+ L  L VLNL  N L 
Sbjct: 176 GIGDAGIR-ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL- 233

Query: 508 GSVPTSLVA---RSQNGSLL 524
                + +A    S N SLL
Sbjct: 234 TDAGAAALASALLSPNISLL 253

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 452 NLTSEGLTGKISPSLSNLKSLENLDLSNNSLT----GSIPEFLSQLPLLRVLNLDGNKLS 507
           NLT  G     S  LS   SL  L LS N +T      + E L++   L  L+L GNK  
Sbjct: 232 NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 528 LGKGGFGTVYHG-YLADGSEVAIKMLSASSSQGPKQ-FRTEVELI 570
           LG+GGFGTVY       G +VAIK++    S    +    E+E++
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEIL 45

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 526 RILGKGGFGTVYHGYLADGS----EVAIKMLSAS-SSQGPKQFRTEVEL 569
           + LG+G FG VY G L        EVA+K L    S +  K F  E  +
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARV 49

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDYYKNL 576
           L R LG G FG V+ G   +   VAIK+L +      + F+ EV+ +   K L
Sbjct: 10  LERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQAL---KRL 59

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
PLN03150	623	hypothetical protein; Provisional	100.0
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	100.0
PLN03150	623	hypothetical protein; Provisional	99.85
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.39
PF12819	347	Malectin_like: Carbohydrate-binding protein of the	99.37
PF11721	174	Malectin: Di-glucose binding within endoplasmic re	99.26
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.21
KOG1187	361	consensus Serine/threonine protein kinase [Signal	98.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.66
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	97.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.96
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	97.81
KOG0595	429	consensus Serine/threonine-protein kinase involved	97.78
KOG0192	362	consensus Tyrosine kinase specific for activated (	97.78
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	97.72
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	97.7
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	97.68
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	97.68
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	97.63
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	97.62
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	97.53
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	97.51
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	97.49
KOG2052	513	consensus Activin A type IB receptor, serine/threo	97.48
KOG0575	592	consensus Polo-like serine/threonine protein kinas	97.44
PHA02988	283	hypothetical protein; Provisional	97.44
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	97.38
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	97.37
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	97.35
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	97.32
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	97.21
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	97.21
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	97.19
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	97.16
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	97.15
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	97.15
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	97.14
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.11
KOG1989	738	consensus ARK protein kinase family [Signal transd	97.07
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	97.06
KOG3653	534	consensus Transforming growth factor beta/activin	97.06
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	97.02
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	97.01
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	97.0
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	96.99
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	96.96
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	96.96
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	96.95
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	96.94
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	96.9
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	96.9
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	96.89
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	96.88
PLN00034	353	mitogen-activated protein kinase kinase; Provision	96.88
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	96.87
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	96.86
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	96.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.85
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	96.84
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	96.83
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	96.83
PRK09188	365	serine/threonine protein kinase; Provisional	96.83
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	96.81
KOG0198	313	consensus MEKK and related serine/threonine protei	96.81
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	96.81
KOG0661	538	consensus MAPK related serine/threonine protein ki	96.79
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	96.78
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	96.78
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	96.78
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	96.77
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	96.77
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	96.75
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	96.75
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	96.74
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	96.74
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	96.74
KOG0598	357	consensus Ribosomal protein S6 kinase and related	96.74
PTZ00263	329	protein kinase A catalytic subunit; Provisional	96.72
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	96.72
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	96.7
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	96.7
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	96.7
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	96.7
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	96.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.69
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	96.68
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	96.68
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	96.68
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	96.68
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	96.67
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	96.67
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	96.67
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	96.66
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	96.65
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	96.64
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.64
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	96.61
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	96.6
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	96.59
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	96.59
KOG0577	948	consensus Serine/threonine protein kinase [Signal	96.58
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	96.57
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	96.57
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	96.52
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	96.52
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	96.52
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	96.51
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	96.51
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	96.5
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	96.49
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	96.48
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	96.47
PTZ00036	440	glycogen synthase kinase; Provisional	96.47
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	96.46
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.45
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	96.45
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	96.45
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	96.45
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	96.44
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	96.43
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	96.43
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	96.43
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	96.42
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	96.41
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	96.41
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	96.4
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	96.4
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	96.4
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	96.39
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	96.38
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	96.38
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	96.36
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	96.36
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	96.36
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	96.35
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	96.35
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	96.35
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	96.35
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	96.35
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	96.34
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	96.34
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	96.32
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	96.31
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	96.31
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	96.31
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	96.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.3
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	96.29
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	96.29
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	96.28
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	96.28
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	96.27
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	96.27
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	96.26
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	96.26
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	96.25
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	96.25
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	96.25
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	96.25
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	96.25
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	96.25
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	96.24
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	96.24
PHA03212	391	serine/threonine kinase US3; Provisional	96.24
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	96.24
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	96.22
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	96.22
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	96.22
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	96.21
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	96.2
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	96.2
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	96.19
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	96.19
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	96.18
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	96.18
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	96.17
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	96.17
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	96.17
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	96.17
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	96.16
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	96.15
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	96.14
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.14
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.14
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	96.14
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	96.12
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	96.11
KOG0582	516	consensus Ste20-like serine/threonine protein kina	96.11
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	96.09
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	96.08
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	96.08
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	96.08
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	96.07
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	96.07
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	96.06
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	96.05
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.05
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	96.04
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	96.04
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	96.03
PLN00009	294	cyclin-dependent kinase A; Provisional	96.03
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	96.03
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	96.03
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	96.02
PTZ00024	335	cyclin-dependent protein kinase; Provisional	96.02
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	96.02
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	96.02
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	96.01
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	96.01
PLN03224	507	probable serine/threonine protein kinase; Provisio	96.0
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	96.0
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	95.99
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	95.99
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	95.98
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	95.98
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	95.98
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	95.97
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	95.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	95.96
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	95.96
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	95.96
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	95.95
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	95.94
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	95.94
PTZ00283	496	serine/threonine protein kinase; Provisional	95.94
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	95.93
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.93
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	95.92
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	95.92
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	95.92
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	95.92
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	95.91
KOG0578	550	consensus p21-activated serine/threonine protein k	95.91
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	95.9
KOG0201	467	consensus Serine/threonine protein kinase [Signal	95.89
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	95.89
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	95.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.88
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	95.87
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	95.86
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	95.86
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	95.86
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	95.84
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	95.84
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	95.83
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	95.83
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	95.83
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	95.83
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	95.82
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	95.82
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	95.82
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	95.81
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	95.8
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	95.8
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	95.8
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	95.79
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	95.78
PTZ00267	478	NIMA-related protein kinase; Provisional	95.77
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	95.77
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	95.77
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	95.76
PHA03211	461	serine/threonine kinase US3; Provisional	95.76
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	95.75
KOG0605	550	consensus NDR and related serine/threonine kinases	95.73
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	95.73
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	95.73
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	95.71
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	95.71
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	95.67
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	95.65
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	95.63
KOG0583	370	consensus Serine/threonine protein kinase [Signal	95.62
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	95.62
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	95.61
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	95.6
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	95.59
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	95.57
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	95.57
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	95.56
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	95.56
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	95.56
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	95.55
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	95.53
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	95.52
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	95.51
KOG0586	596	consensus Serine/threonine protein kinase [General	95.51
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	95.5
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	95.45
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	95.43
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	95.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	95.42
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	95.42
PHA03207	392	serine/threonine kinase US3; Provisional	95.41
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	95.39
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	95.39
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	95.37
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	95.35
KOG0611	668	consensus Predicted serine/threonine protein kinas	95.33
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	95.32
KOG0581	364	consensus Mitogen-activated protein kinase kinase	95.31
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	95.26
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	95.26
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	95.26
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	95.24
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	95.21
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	95.19
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	95.19
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	95.18
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	95.16
PRK10345	210	hypothetical protein; Provisional	95.14
PTZ00266	1021	NIMA-related protein kinase; Provisional	95.14
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	95.12
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	95.11
PHA03209	357	serine/threonine kinase US3; Provisional	95.09
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	95.09
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	95.07
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	95.01
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	94.96
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	94.96
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	94.95
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	94.91
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	94.76
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	94.74
KOG0694	694	consensus Serine/threonine protein kinase [Signal	94.62
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	94.59
KOG0584	632	consensus Serine/threonine protein kinase [General	94.52
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	94.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.22
KOG4721	904	consensus Serine/threonine protein kinase, contain	94.11
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	94.09
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	94.01
PHA03210	501	serine/threonine kinase US3; Provisional	93.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	93.83
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	93.64
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	93.64
KOG0607	463	consensus MAP kinase-interacting kinase and relate	93.57
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	93.25
KOG0596	677	consensus Dual specificity; serine/threonine and t	93.24
PTZ00284	467	protein kinase; Provisional	93.17
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.13
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	92.96
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	92.95
KOG1027	903	consensus Serine/threonine protein kinase and endo	92.87
KOG4717	864	consensus Serine/threonine protein kinase [Signal	92.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	92.85
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	92.62
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	92.58
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	92.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	92.53
KOG0589	426	consensus Serine/threonine protein kinase [General	92.34
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	92.33
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	92.19
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	91.98
PLN03210	1153	Resistant to P. syringae 6; Provisional	91.93
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	91.92
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	91.61
PLN03210	1153	Resistant to P. syringae 6; Provisional	91.56
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	91.48
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.35
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	91.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	91.14
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	91.01
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	90.81
KOG1152	772	consensus Signal transduction serine/threonine kin	90.8
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	90.52
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	90.43
PHA02882	294	putative serine/threonine kinase; Provisional	90.37
smart00090	237	RIO RIO-like kinase.	90.2
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	89.81
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	89.6
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	89.59
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	89.05
KOG3593	355	consensus Predicted receptor-like serine/threonine	88.37
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	88.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	88.02
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	87.76
KOG0610	459	consensus Putative serine/threonine protein kinase	87.75
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	87.72
KOG0576	829	consensus Mitogen-activated protein kinase kinase	87.7
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	87.27
PRK09605	535	bifunctional UGMP family protein/serine/threonine	86.73
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	86.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	85.95
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	84.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	84.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	83.73
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	83.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	81.95
KOG1167	418	consensus Serine/threonine protein kinase of the C	81.57
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	81.17
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	80.65
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	80.64

>PLN03150 hypothetical protein; Provisional

Probab=100.00  E-value=3.7e-77  Score=669.94  Aligned_cols=440  Identities=29%  Similarity=0.483  Sum_probs=334.8

Q ss_pred             CCCCcEEEecCCCCCCcccCCCCceeecCCcccccCCCccccccccccccccccceeeeeeC--CCCceeEEecCCCCCc
Q 008008           60 DIGGDISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNKNISSKFMSANLQNTYATVRSFP--EGNRNCYSLRPPEGKA  137 (581)
Q Consensus        60 ~~~gf~~IdCG~~~~~~~~D~~~~~~w~~D~~~~~~g~~~~i~~~~~~~~~~~~y~t~R~f~--~~~~~~Y~~~v~~~~~  137 (581)
                      .++++|+||||++++.. +|. ++|+|++|..|.. |........   ....++|+|+|+||  +|+++||+||+.+++ 
T Consensus        21 ~~~~~~~I~CGs~~~~~-~d~-~~~~w~~D~~~~~-~~~~~~~~~---~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g-   93 (623)
T PLN03150         21 PEPFTMRISCGARVNVR-TAP-TNTLWYKDFAYTG-GIPANATRP---SFIAPPLKTLRYFPLSDGPENCYNINRVPKG-   93 (623)
T ss_pred             CCCccEEEeCCCCCCcc-cCC-CCCEEcCCccccc-CccccccCc---ccccchhhccccCCcccccccceEeeecCCC-
Confidence            45789999999975422 454 7999999977643 222211111   12357899999999  577899999998888 


Q ss_pred             ccEEEEEEeecCCCCCCCCCceEEEEEcceeeEEEEe--cCCCccEEEEEEEEccCCcEEEEEeeCCCCCceeeeeeeee
Q 008008          138 KTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKF--DNASHVVIKEIIHSALMDEINVCLLNTGKGTPFISALELRH  215 (581)
Q Consensus       138 ~~ylVRl~F~~~~yd~~~~~~~F~v~i~~~~~~~v~~--~~~~~~~~~E~i~~~~~~~l~v~l~~~~~~~pfIn~iEi~~  215 (581)
                       +||||+||+|++||+.+..|.|||+++++.|.+|..  +..+..++||+++.++++.+.|||+|++.++||||+||||+
T Consensus        94 -~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~  172 (623)
T PLN03150         94 -HYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQ  172 (623)
T ss_pred             -cEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEE
Confidence             999999999999999888899999999999999964  33456799999999999999999999999999999999999


Q ss_pred             cCccccccc-----ccceeeEEeeecCCCCC-ccccCCCCCC--CCccCCCCCC---CCCeeeecceeeeccCCCCCCch
Q 008008          216 FHNATYRTQ-----SGALVLYRRLDVGSTTT-QIIRFKDDHY--DRIWVPYPGF---PGSASINTSFIIDSLVDSQYRLP  284 (581)
Q Consensus       216 l~~~~y~~~-----~~~l~~~~Rin~G~~~~-~~ir~~~D~~--dR~W~~d~~~---~~~~~~st~~~i~~~~~~~~~~P  284 (581)
                      +|+++|...     ..+|++++|+||||.+. ..+||++|+|  ||+|.+|. .   ..+..+++...|.++..+++.+|
T Consensus       173 l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~-~~~~~~~~~~st~~~I~~~~~~~~~~P  251 (623)
T PLN03150        173 VDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQ-TFGSGSDQAISTENVIKKASNAPNFYP  251 (623)
T ss_pred             cCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCc-ccCCCcccccccccccccccCCCccCh
Confidence            999999643     23699999999999753 4589999999  99999997 3   23566777777776556788999


Q ss_pred             HHHHHhcccCCCCCcceEEEEecCCCCccEEEEEEeeeccc-cCCCCeEEEEEEECCEEecccccc-----c---ceeee
Q 008008          285 SAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELES-RQGNQYREFSIELNGNLWEKSVVP-----E---YLQSK  355 (581)
Q Consensus       285 ~~Vy~TA~~~~~~~~~~~~t~~~~~~~~~y~vrLhF~ei~~-~~~~~~R~F~V~ing~~~~~~~~p-----~---~~~~~  355 (581)
                      +.||||||++.+...+++|.|+ +++++.|+|||||||++. ....++|+|+|+|||+.+.+++++     .   .++.+
T Consensus       252 ~~VyqTA~~~~~~~~~lty~~~-v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~  330 (623)
T PLN03150        252 ESLYQSALVSTDTQPDLSYTMD-VDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLN  330 (623)
T ss_pred             HHHhhhhccccCCCCceEEEee-cCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEE
Confidence            9999999999875434444444 578899999999999984 445456999999999988765432     1   22233


Q ss_pred             eEEeeecCCCCeEEEEEeecCCCCcChHHHHHHhhhhhccCCCCCCcchhhhhhhhhhhccCC--CCCCCCCCCCCcccc
Q 008008          356 TISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLG--KGWQGDPCSPMYYSW  433 (581)
Q Consensus       356 ~v~~~~~~~~~~~~isl~~t~~s~lp~~ln~le~~~l~~~~~~~t~~~d~~aL~~~k~~~~~~--~~W~g~pC~~~~~~W  433 (581)
                      +.+.   +.++.++|+|+|+..+  +|+|||+|+|++.+. ...+.+.|+.+|+.+|..+...  .+|.++||.|..+.|
T Consensus       331 ~~v~---~~~g~l~isl~p~~~s--~pilNaiEI~~~~~~-~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w  404 (623)
T PLN03150        331 KTVA---VSGRTLTIVLQPKKGT--HAIINAIEVFEIITA-ESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPW  404 (623)
T ss_pred             eEEe---ecCCeEEEEEeeCCCC--cceeeeeeeeecccc-ccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCccccc
Confidence            3333   2347899999997655  599999999999885 5678889999999999887643  389999999888899


Q ss_pred             cCccCCCCCCC-------------------------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccc
Q 008008          434 DGLNCSYNGYK-------------------------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE  488 (581)
Q Consensus       434 ~Gv~C~~~~~~-------------------------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~  488 (581)
                      .||.|......                         ..+++.|+|++|.|.|.+|..++.+++|+.|+|++|+|+|.+|.
T Consensus       405 ~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~  484 (623)
T PLN03150        405 SGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE  484 (623)
T ss_pred             ccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence            99999632110                         13455555555656566665666666666666666666666666


Q ss_pred             cccCCCccccccccCccCCCCCchHHH
Q 008008          489 FLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       489 ~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      .++++++|+.|+|++|+|+|.+|..+.
T Consensus       485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        485 SLGQLTSLRILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             HHhcCCCCCEEECcCCcccccCChHHh
Confidence            666666666666666666666665553

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=100.00  E-value=1.3e-68  Score=560.47  Aligned_cols=323  Identities=43%  Similarity=0.734  Sum_probs=270.6

Q ss_pred             EecCCCCCCc-ccCCCCceeecCCcccccCCCcccccccc--ccccccccceeeeeeCCCCceeEEecCCCCCcccEEEE
Q 008008           67 IDCGVPAGFM-YLDEKTQLSYKSDEEFIRTGVNKNISSKF--MSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTR  143 (581)
Q Consensus        67 IdCG~~~~~~-~~D~~~~~~w~~D~~~~~~g~~~~i~~~~--~~~~~~~~y~t~R~f~~~~~~~Y~~~v~~~~~~~ylVR  143 (581)
                      ||||++.+.+ |+|+.+||+|++|.+|+++|.+..++...  ..+...++|+|||+||+|.|+||+|++.++++++||||
T Consensus         1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~~g~r~cY~l~~~~~~~~~yliR   80 (347)
T PF12819_consen    1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFPEGSRNCYTLPVTPPGGGKYLIR   80 (347)
T ss_pred             CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcCCCCccEEEeeccCCCCceEEEE
Confidence            7999998777 99988999999999999999988883221  12345789999999999989999999984333499999


Q ss_pred             EEeecCCCCCCC-----CCceEEEEEcceeeEEEEecCC-CccEEEEEEEEcc-CCcEEEEEeeCCCCC-ceeeeeeeee
Q 008008          144 ASFMYGDYDDED-----KLPEFDLYIGVNRWDSIKFDNA-SHVVIKEIIHSAL-MDEINVCLLNTGKGT-PFISALELRH  215 (581)
Q Consensus       144 l~F~~~~yd~~~-----~~~~F~v~i~~~~~~~v~~~~~-~~~~~~E~i~~~~-~~~l~v~l~~~~~~~-pfIn~iEi~~  215 (581)
                      |||+||+||+.+     .++.|||++|.+.|.+|+.+.. ..++++||++.+. ++.|+|||+|++.+. |||||||||+
T Consensus        81 l~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiEl~~  160 (347)
T PF12819_consen   81 LHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSNSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIELRP  160 (347)
T ss_pred             EEeccccccccccccccCCcceEEEECCceeEEEEecCCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEEEEE
Confidence            999999999774     2478999999999999998762 2579999999888 799999999999776 9999999999


Q ss_pred             cCcccccc----cccceeeEEeeecCCCCCccccCCCCCCCCccCCCCCCCCCeeeecceeee-ccCCCCCCchHHHHHh
Q 008008          216 FHNATYRT----QSGALVLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIID-SLVDSQYRLPSAVMKT  290 (581)
Q Consensus       216 l~~~~y~~----~~~~l~~~~Rin~G~~~~~~ir~~~D~~dR~W~~d~~~~~~~~~st~~~i~-~~~~~~~~~P~~Vy~T  290 (581)
                      ||+++|+.    .+.+|++++|+|||+.... |||++|+|||+|.++.....|..+++...++ ....+.+.||.+||||
T Consensus       161 lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~~-iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~T  239 (347)
T PF12819_consen  161 LPDSLYPDTDANSSQALETVYRLNVGGSSSF-IRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQT  239 (347)
T ss_pred             CCccceeccccCCCceeEEEEeecCCCcccc-cCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHh
Confidence            99999942    2347999999999997433 9999999999999874246688888877776 4456899999999999


Q ss_pred             cccCCCCCcceEEEEecCCCCccEEEEEEeeeccccC-CCCeEEEEEEECCEEecccccccceeee-------eEEeeec
Q 008008          291 AVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQ-GNQYREFSIELNGNLWEKSVVPEYLQSK-------TISSTQP  362 (581)
Q Consensus       291 A~~~~~~~~~~~~t~~~~~~~~~y~vrLhF~ei~~~~-~~~~R~F~V~ing~~~~~~~~p~~~~~~-------~v~~~~~  362 (581)
                      |+++.+.+.+++++|.+++++..|+||||||||+... .+++|+|+|||||+.+.++++|.++..+       +++..  
T Consensus       240 A~~~~~~s~~~nltw~~~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~--  317 (347)
T PF12819_consen  240 ARTPSNSSDPLNLTWSFVDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNV--  317 (347)
T ss_pred             hhcccccccceEEEeccCCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEe--
Confidence            9999987777999999988999999999999999854 3435999999999998767776554443       33331  


Q ss_pred             CCCCeEEEEEeecCCCCcChHHHHHHhhhh
Q 008008          363 ARGSKLNFSLCKTSNSTLPPILNAIEIYIL  392 (581)
Q Consensus       363 ~~~~~~~isl~~t~~s~lp~~ln~le~~~l  392 (581)
                      ..++.++|+|+|+++|++||+|||+|+|++
T Consensus       318 ~~~~~~~isL~~t~~S~lppiLNalEIy~v  347 (347)
T PF12819_consen  318 PDSGFLNISLGPTPDSTLPPILNALEIYKV  347 (347)
T ss_pred             cCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence            133579999999999999999999999974

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PLN03150 hypothetical protein; Provisional

Probab=99.85  E-value=2.2e-20  Score=210.57  Aligned_cols=153  Identities=11%  Similarity=0.110  Sum_probs=106.3

Q ss_pred             cEEEecCCCCCC---cccCCC--CceeecCCcccccCCC-----ccccccccccc--cccccceeeeeeCCC-CceeEEe
Q 008008           64 DISIDCGVPAGF---MYLDEK--TQLSYKSDEEFIRTGV-----NKNISSKFMSA--NLQNTYATVRSFPEG-NRNCYSL  130 (581)
Q Consensus        64 f~~IdCG~~~~~---~~~D~~--~~~~w~~D~~~~~~g~-----~~~i~~~~~~~--~~~~~y~t~R~f~~~-~~~~Y~~  130 (581)
                      .+|||||++...   .|.|+.  .+|.|.+|..|+....     ...|......+  .|..+|+|||.+.+. ...+|+|
T Consensus       193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lty~~  272 (623)
T PLN03150        193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTM  272 (623)
T ss_pred             EEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCCCCceEEEe
Confidence            469999986432   343332  3799999988763311     11121110011  245799999999842 3569999


Q ss_pred             cCCCCCcccEEEEEEeecCCCCC-CCCCceEEEEEcceeeE-EEEe---cC-CCccEEEEEEEEccCCcEEEEEeeCCCC
Q 008008          131 RPPEGKAKTYLTRASFMYGDYDD-EDKLPEFDLYIGVNRWD-SIKF---DN-ASHVVIKEIIHSALMDEINVCLLNTGKG  204 (581)
Q Consensus       131 ~v~~~~~~~ylVRl~F~~~~yd~-~~~~~~F~v~i~~~~~~-~v~~---~~-~~~~~~~E~i~~~~~~~l~v~l~~~~~~  204 (581)
                      ++++++  +|+|||||++..... ....++|+|++++.... .++.   .+ ...++++|+.+.+.++.+.|+|+|....
T Consensus       273 ~v~~~~--~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s  350 (623)
T PLN03150        273 DVDPNR--NYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGT  350 (623)
T ss_pred             ecCCCC--CEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCC
Confidence            999888  999999999764321 22238999999985322 1121   21 3468999999988888899999998877


Q ss_pred             CceeeeeeeeecCc
Q 008008          205 TPFISALELRHFHN  218 (581)
Q Consensus       205 ~pfIn~iEi~~l~~  218 (581)
                      .|+||||||+++..
T Consensus       351 ~pilNaiEI~~~~~  364 (623)
T PLN03150        351 HAIINAIEVFEIIT  364 (623)
T ss_pred             cceeeeeeeeeccc
Confidence            89999999998875

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.39  E-value=5.9e-13  Score=126.35  Aligned_cols=138  Identities=19%  Similarity=0.323  Sum_probs=81.5

Q ss_pred             EEEecCCCCCCcccCCCCceeecCCcccccCCCc-----------cccccccccccccccceeeeeeCCCCceeEEecCC
Q 008008           65 ISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVN-----------KNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPP  133 (581)
Q Consensus        65 ~~IdCG~~~~~~~~D~~~~~~w~~D~~~~~~g~~-----------~~i~~~~~~~~~~~~y~t~R~f~~~~~~~Y~~~v~  133 (581)
                      ++||||++.   ++| ..++.|.+|..|......           ............+.+|+|.|+-+.  ...|.+|+.
T Consensus         3 ~~IN~Gg~~---~~~-~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~--~f~Y~ip~~   76 (174)
T PF11721_consen    3 LRINAGGPA---YTD-SSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS--SFSYDIPVV   76 (174)
T ss_dssp             EEEEETSSS---EEE-TTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS--SEEEEEE--
T ss_pred             EEEECCCCc---ccC-CCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC--ceEEEEecC
Confidence            799999864   344 479999999977544330           011111111234589999999654  479999966


Q ss_pred             CCCcccEEEEEEeecCCCCC------CCCCceEEEEEccee-eEEEEe---cCC-CccEEEEE-EEEccCCcEEEEEee-
Q 008008          134 EGKAKTYLTRASFMYGDYDD------EDKLPEFDLYIGVNR-WDSIKF---DNA-SHVVIKEI-IHSALMDEINVCLLN-  200 (581)
Q Consensus       134 ~~~~~~ylVRl~F~~~~yd~------~~~~~~F~v~i~~~~-~~~v~~---~~~-~~~~~~E~-i~~~~~~~l~v~l~~-  200 (581)
                      +.+  .|.|||||....+..      .++ ++|||+++++. ...++.   .+. ..++++++ -+.+.++.|.|+|.. 
T Consensus        77 ~~G--~Y~V~L~FaE~~~~~~~~~~~~G~-RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~  153 (174)
T PF11721_consen   77 PNG--TYTVRLHFAELYFGASGGASGPGQ-RVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWA  153 (174)
T ss_dssp             S-E--EEEEEEEEE-SSS--------SSS-S-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE
T ss_pred             CCc--EEEEEEEeccccccccccccCCCc-eEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEec
Confidence            665  999999999776665      566 89999999842 222222   122 33688888 667789999999996 


Q ss_pred             ----------CCCCCceeeee
Q 008008          201 ----------TGKGTPFISAL  211 (581)
Q Consensus       201 ----------~~~~~pfIn~i  211 (581)
                                ...+.|.||||
T Consensus       154 ~~~~~~i~~~~~~~~p~IsaI  174 (174)
T PF11721_consen  154 GKGTLCIPFIGSYGNPLISAI  174 (174)
T ss_dssp             --SEEEEEEESSSSSSSEEEE
T ss_pred             CCCcEEeeccccCCCcEEeeC
Confidence                      44566888876

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []

Probab=99.37  E-value=3.2e-12  Score=134.49  Aligned_cols=147  Identities=19%  Similarity=0.231  Sum_probs=102.3

Q ss_pred             cEEEecCCCC-CCcccCCCCceeecCC---ccc--ccCCCccccc---cccccccccccceeeeeeCCCC---ceeEEec
Q 008008           64 DISIDCGVPA-GFMYLDEKTQLSYKSD---EEF--IRTGVNKNIS---SKFMSANLQNTYATVRSFPEGN---RNCYSLR  131 (581)
Q Consensus        64 f~~IdCG~~~-~~~~~D~~~~~~w~~D---~~~--~~~g~~~~i~---~~~~~~~~~~~y~t~R~f~~~~---~~~Y~~~  131 (581)
                      ++|+|||++. ...|.|+..+|.|.+.   ...  +.+..  .+.   .......|..+|+|||......   ..+|.+ 
T Consensus       180 ~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~--~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-  256 (347)
T PF12819_consen  180 VYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTS--NININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-  256 (347)
T ss_pred             EEeecCCCcccccCCCCCcceeeccccccCccccccccce--eeecccCCccCcChHHHHHhhhcccccccceEEEecc-
Confidence            6899999874 2567777799999953   111  11211  122   1111123568999999998543   458888 


Q ss_pred             CCCCCcccEEEEEEeecCCCC--CCCCCceEEEEEcceeeE-EEE---ecCCCccEEEEEEEEccC-CcEEEEEeeCCCC
Q 008008          132 PPEGKAKTYLTRASFMYGDYD--DEDKLPEFDLYIGVNRWD-SIK---FDNASHVVIKEIIHSALM-DEINVCLLNTGKG  204 (581)
Q Consensus       132 v~~~~~~~ylVRl~F~~~~yd--~~~~~~~F~v~i~~~~~~-~v~---~~~~~~~~~~E~i~~~~~-~~l~v~l~~~~~~  204 (581)
                      ++++.  .|+||+|||.....  +.+ .+.|+|+++++.|. .+.   +.....++++++++.+++ +.+.|+|+++..+
T Consensus       257 ~~~~~--~y~v~lHFaEi~~~~~~~~-~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S  333 (347)
T PF12819_consen  257 VDPGF--SYYVRLHFAEIQSLSPNNN-QREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDS  333 (347)
T ss_pred             CCCCc--cEEEEEEEeecccccCCCC-eEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCC
Confidence            88888  99999999975442  223 38999999997664 222   122345678999998865 4699999998766


Q ss_pred             --Cceeeeeeeeec
Q 008008          205 --TPFISALELRHF  216 (581)
Q Consensus       205 --~pfIn~iEi~~l  216 (581)
                        -|+|||+||+++
T Consensus       334 ~lppiLNalEIy~v  347 (347)
T PF12819_consen  334 TLPPILNALEIYKV  347 (347)
T ss_pred             CcCceeEeeeeEeC
Confidence              499999999975

This entry represents a malectin-like domain found in a number of plant receptor kinases.

>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan

Probab=99.26  E-value=2.5e-12  Score=122.11  Aligned_cols=130  Identities=18%  Similarity=0.175  Sum_probs=70.4

Q ss_pred             EEeeecCCCCCccccCCCCCCCCccCCCCCCCC-Cee--eecc--e--eeeccCCCCCCchHHHHHhcccCCCCCcceEE
Q 008008          231 YRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPG-SAS--INTS--F--IIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDF  303 (581)
Q Consensus       231 ~~Rin~G~~~~~~ir~~~D~~dR~W~~d~~~~~-~~~--~st~--~--~i~~~~~~~~~~P~~Vy~TA~~~~~~~~~~~~  303 (581)
                      ++||||||+.     + .|..++.|.+|. .+. ...  ....  .  ............+..+|||+|....   .+.|
T Consensus         2 ~~~IN~Gg~~-----~-~~~~g~~w~~D~-~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~f~Y   71 (174)
T PF11721_consen    2 VLRINAGGPA-----Y-TDSSGIVWEADQ-YYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---SFSY   71 (174)
T ss_dssp             EEEEEETSSS-----E-EETTTEEE-SSS-SSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---SEEE
T ss_pred             EEEEECCCCc-----c-cCCCCCEEcCCC-CCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---ceEE
Confidence            6899999975     3 677899999997 331 111  1110  0  0011112344567899999999543   2444


Q ss_pred             EEecCCCCccEEEEEEeeeccccC------CCCeEEEEEEECCEEeccccccc------c--eeeeeEEeeecCCCCeEE
Q 008008          304 DFEIGDPTLQFYVYMHFAELESRQ------GNQYREFSIELNGNLWEKSVVPE------Y--LQSKTISSTQPARGSKLN  369 (581)
Q Consensus       304 t~~~~~~~~~y~vrLhF~ei~~~~------~~~~R~F~V~ing~~~~~~~~p~------~--~~~~~v~~~~~~~~~~~~  369 (581)
                      .. |..+++.|.|+|||||+....      +++ |+|||+|||+.+.++|++.      .  ....+ ... .+..|.++
T Consensus        72 ~i-p~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~-RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~-~~v-~v~dg~L~  147 (174)
T PF11721_consen   72 DI-PVVPNGTYTVRLHFAELYFGASGGASGPGQ-RVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRF-FNV-TVTDGTLN  147 (174)
T ss_dssp             EE-E--S-EEEEEEEEEE-SSS--------SSS-S-EEEEETTEEEEEEE-HHHHHSSSS---EEEE-EEE-EEETTEEE
T ss_pred             EE-ecCCCcEEEEEEEeccccccccccccCCCc-eEEEEEecceEEEeccCHHHHcCCCceEEEEEE-EEE-EEeCCcEE
Confidence            44 236679999999999998766      777 9999999999988765421      1  11111 111 24567888


Q ss_pred             EEEee
Q 008008          370 FSLCK  374 (581)
Q Consensus       370 isl~~  374 (581)
                      |.|..
T Consensus       148 i~f~~  152 (174)
T PF11721_consen  148 IQFVW  152 (174)
T ss_dssp             TTEEE
T ss_pred             EEEEe
Confidence            88874

It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.21  E-value=3.4e-11  Score=143.74  Aligned_cols=131  Identities=29%  Similarity=0.475  Sum_probs=99.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH-----------
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL-----------  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l-----------  514 (581)
                      ..++.|+|++|.++|.+|..+..+++|+.|+|++|+++|.+|..+..++.|+.|++++|++.|.+|..-           
T Consensus       523 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~  602 (968)
T PLN00113        523 KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVA  602 (968)
T ss_pred             cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhc
Confidence            567888888999888888888888999999999999999999988888999999999999888777320           


Q ss_pred             -----H--------------------------------------------hhcc----------CCc--c----------
Q 008008          515 -----V--------------------------------------------ARSQ----------NGS--L----------  523 (581)
Q Consensus       515 -----~--------------------------------------------~~~~----------~~~--~----------  523 (581)
                           +                                            ++.+          .+.  .          
T Consensus       603 ~n~~lc~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (968)
T PLN00113        603 GNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKS  682 (968)
T ss_pred             CCccccCCccccCCCCCccccccceeeeehhHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccchh
Confidence                 0                                            0000          000  0          


Q ss_pred             -----------eEEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          524 -----------LLRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       524 -----------~l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                                 ...++|+|+||.||+|+. .++..||||+++.....    ..+|++.+++  |||||+++
T Consensus       683 ~~~~~~~~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~----~~~~~~~l~~l~HpnIv~~~  749 (968)
T PLN00113        683 ITINDILSSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSI----PSSEIADMGKLQHPNIVKLI  749 (968)
T ss_pred             hhHHHHHhhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCccc----cHHHHHHHhhCCCCCcceEE
Confidence                       001689999999999997 57889999999644322    2346788888  99999986

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.77  E-value=9.2e-09  Score=108.93  Aligned_cols=67  Identities=43%  Similarity=0.615  Sum_probs=54.9

Q ss_pred             HHhhccCCcceEEeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          514 LVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       514 l~~~~~~~~~~l~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      +..+++++.... +||+|+||.||+|.+++|+.||||+++....+..+||.+|+++|++  |||||+|++
T Consensus        70 l~~AT~~Fs~~~-~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlG  138 (361)
T KOG1187|consen   70 LRKATNNFSESN-LIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLG  138 (361)
T ss_pred             HHHHHhCCchhc-ceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEE
Confidence            444455555444 7999999999999999999999999976544326789999999999  999999974

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.66  E-value=3.6e-08  Score=117.92  Aligned_cols=104  Identities=29%  Similarity=0.646  Sum_probs=82.5

Q ss_pred             Ccchhhhhhhhhhhcc----CCCCCCC-CCCCCCcccccCccCCCCCCCCCceeEeecCCCCCceecchhhhcccCCCeE
Q 008008          401 DQDDVNAIMDIKLSYD----LGKGWQG-DPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENL  475 (581)
Q Consensus       401 ~~~d~~aL~~~k~~~~----~~~~W~g-~pC~~~~~~W~Gv~C~~~~~~~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L  475 (581)
                      .++|..+|+++|..+.    ...+|.. +.|    |.|.||.|+..    .+|+.|+|++|+++|.+|..+..++.|+.|
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~----c~w~gv~c~~~----~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L   98 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWNSSADV----CLWQGITCNNS----SRVVSIDLSGKNISGKISSAIFRLPYIQTI   98 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCCCCCCC----CcCcceecCCC----CcEEEEEecCCCccccCChHHhCCCCCCEE
Confidence            5578999999998774    2457853 334    38999999753    478999999999888888888888899999


Q ss_pred             eCCCCCCCCCcccccc-CCCccccccccCccCCCCCch
Q 008008          476 DLSNNSLTGSIPEFLS-QLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       476 ~Ls~N~l~G~iP~~l~-~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      +|++|+++|.+|..+. .+++|++|+|++|+++|.+|.
T Consensus        99 ~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~  136 (968)
T PLN00113         99 NLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR  136 (968)
T ss_pred             ECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc
Confidence            9999988888887765 777888888887777776664

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=1.4e-06  Score=97.67  Aligned_cols=55  Identities=29%  Similarity=0.395  Sum_probs=47.6

Q ss_pred             eeccCCceeeeeeeecC------CceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLAD------GSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .+|+|.||+||+|+..+      -+.||||.|++...+ ..++|++|+++|+.  |||||+|++
T Consensus       493 eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlG  556 (774)
T KOG1026|consen  493 ELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLG  556 (774)
T ss_pred             hhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence            78999999999999632      358999999876544 78999999999999  999999974

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.96  E-value=4.5e-06  Score=64.74  Aligned_cols=61  Identities=49%  Similarity=0.662  Sum_probs=53.3

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  506 (581)
                      ++++.|+|++|.++.--+..|..+++|+.|++++|.++.--|..+..+++|+.|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3688999999999855456789999999999999999866667889999999999999975

...

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=97.81  E-value=1.3e-05  Score=82.16  Aligned_cols=52  Identities=29%  Similarity=0.495  Sum_probs=41.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      +++|.|+||.||+|.+. .+..||||+.-...+    .=-+|+++|.+  |||||+|+|
T Consensus        30 ~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r----~knrEl~im~~l~HpNIV~L~~   84 (364)
T KOG0658|consen   30 RLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR----YKNRELQIMRKLDHPNIVRLLY   84 (364)
T ss_pred             EEEeecccceEEEEEEcCCCceeEEEEecCCCC----cCcHHHHHHHhcCCcCeeeEEE
Confidence            48999999999999985 468999999854432    22367888888  999999976

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.78  E-value=1.7e-05  Score=82.50  Aligned_cols=54  Identities=26%  Similarity=0.444  Sum_probs=44.9

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||.|.|+.||+|+. .++..||||.+....  ....+-...||.+|+.  |||||.|+
T Consensus        17 ~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~   75 (429)
T KOG0595|consen   17 EIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLL   75 (429)
T ss_pred             hccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEE
Confidence            589999999999997 467899999996553  2334557899999999  99999985

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=97.78  E-value=2.4e-05  Score=82.76  Aligned_cols=55  Identities=36%  Similarity=0.570  Sum_probs=45.7

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCC--hHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQG--PKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~--~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .+|.|+||+||+|.+.+-..||||++.......  .++|..|+.+|++  |||||.|++
T Consensus        48 ~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G  106 (362)
T KOG0192|consen   48 VLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYG  106 (362)
T ss_pred             hcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEE
Confidence            489999999999999855559999997543222  5699999999999  999999863

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=97.72  E-value=3.3e-05  Score=83.85  Aligned_cols=52  Identities=31%  Similarity=0.565  Sum_probs=44.3

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|.||+||+|.|.+  .||||.|+....  ...+.|.+|+.++++  |.||+-++
T Consensus       399 rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFM  454 (678)
T KOG0193|consen  399 RIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFM  454 (678)
T ss_pred             eeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeee
Confidence            79999999999999974  599999986533  246889999999999  99998664

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=97.70  E-value=2.7e-05  Score=83.36  Aligned_cols=54  Identities=30%  Similarity=0.505  Sum_probs=48.3

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .||+|-||.|+.|.+++...||||.++.. ....++|.+|+++|.+  |+|||+|++
T Consensus       213 ~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~g  268 (468)
T KOG0197|consen  213 ELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYG  268 (468)
T ss_pred             HhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEE
Confidence            68999999999999998889999999876 3456889999999999  999999973

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.68  E-value=2.6e-05  Score=90.62  Aligned_cols=56  Identities=41%  Similarity=0.579  Sum_probs=47.6

Q ss_pred             EeeccCCceeeeeeeecC--Cc----eEEEEeeccC-CCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          526 RILGKGGFGTVYHGYLAD--GS----EVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~--g~----~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      +.||+|.||.||+|++.+  |.    .||||.++.. +.|...+|.+|..+|++  |||||+|++
T Consensus       698 ~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liG  762 (1025)
T KOG1095|consen  698 RVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIG  762 (1025)
T ss_pred             eeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEE
Confidence            489999999999999854  32    4999999754 45667899999999999  999999974

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.68  E-value=4.1e-05  Score=81.49  Aligned_cols=55  Identities=24%  Similarity=0.359  Sum_probs=46.1

Q ss_pred             EeeccCCceeeeeee-ecCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGY-LADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|-||.|||++ +.+|..||+|++....  .....-..+||.+|++  |||||+|.
T Consensus       123 ~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~  182 (560)
T KOG0600|consen  123 EKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLE  182 (560)
T ss_pred             HHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCccccee
Confidence            479999999999999 6789999999997554  2334556899999999  99999985

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=97.63  E-value=3.1e-05  Score=83.79  Aligned_cols=55  Identities=33%  Similarity=0.481  Sum_probs=45.3

Q ss_pred             eeccCCceeeeeeeecC--C---ceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLAD--G---SEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~--g---~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .+|+|.||.||+|.+..  +   ..||||..+..   .....++|..|.+++.+  |||||+|++
T Consensus       164 kLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yG  228 (474)
T KOG0194|consen  164 KLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYG  228 (474)
T ss_pred             eeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence            68999999999999843  2   23899998752   23446899999999999  999999975

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=97.62  E-value=5.3e-05  Score=81.87  Aligned_cols=55  Identities=22%  Similarity=0.359  Sum_probs=49.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .||+|.||.|..-+++.+..||||.+++.... ..++|..||++|++  |||||+|++
T Consensus       545 kiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvG  602 (807)
T KOG1094|consen  545 KIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLG  602 (807)
T ss_pred             hhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEe
Confidence            68999999999999998899999999976554 45899999999999  999999863

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.53  E-value=2.2e-05  Score=78.04  Aligned_cols=54  Identities=30%  Similarity=0.517  Sum_probs=45.6

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +||+|.||.|||+. +.+|..||.|.++-.  ..+..+....||.+|++  |||||+.+
T Consensus        26 ~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy   84 (375)
T KOG0591|consen   26 KIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYY   84 (375)
T ss_pred             HHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            79999999999988 688999999998733  23345678999999999  99999864

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=97.51  E-value=0.00011  Score=72.59  Aligned_cols=54  Identities=28%  Similarity=0.463  Sum_probs=45.2

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCC-CCC-hHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASS-SQG-PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~-~~~-~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|.||.||+|+ ...|+.||||+++... .+| ...-.+||+.|+.  |+|||.|+
T Consensus         9 ~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~Li   67 (318)
T KOG0659|consen    9 KLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELI   67 (318)
T ss_pred             hhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhh
Confidence            68999999999999 4678999999997553 234 3567899999999  99999885

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=97.49  E-value=6.4e-05  Score=83.72  Aligned_cols=55  Identities=29%  Similarity=0.387  Sum_probs=46.4

Q ss_pred             eeccCCceeeeeeeecC----CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLAD----GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      +||.|.||.|++|+|+-    -..||||.|+.... ....+|..|..+|.+  ||||++|.+
T Consensus       636 VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEG  697 (996)
T KOG0196|consen  636 VIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEG  697 (996)
T ss_pred             EEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEE
Confidence            89999999999999842    24899999987643 345799999999999  999999853

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=97.48  E-value=0.00013  Score=76.77  Aligned_cols=70  Identities=33%  Similarity=0.521  Sum_probs=53.5

Q ss_pred             CCCCchHHHhhccCCcceE-EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc----CCCccccc
Q 008008          507 SGSVPTSLVARSQNGSLLL-RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       507 ~G~iP~~l~~~~~~~~~~l-~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      +|+=++-+.+++-..+..+ .+||+|.||.|++|.|+ |..||||.+...   ..+.+.+|.++-..    |+||..++
T Consensus       197 SGSGlplLVQRTiarqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~sr---dE~SWfrEtEIYqTvmLRHENILgFI  271 (513)
T KOG2052|consen  197 SGSGLPLLVQRTIARQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSSR---DERSWFRETEIYQTVMLRHENILGFI  271 (513)
T ss_pred             CCCCchhHhHHhhhheeEEEEEecCccccceeecccc-CCceEEEEeccc---chhhhhhHHHHHHHHHhccchhhhhh
Confidence            4555566666665555543 48999999999999998 688999999543   45678888887766    99998775

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=97.44  E-value=0.00014  Score=79.05  Aligned_cols=55  Identities=29%  Similarity=0.480  Sum_probs=46.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +++|+|||..||.++- +.|..||+|++....   ....+...+||++.++  |||||+++
T Consensus        24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~   84 (592)
T KOG0575|consen   24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFY   84 (592)
T ss_pred             eeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeee
Confidence            3899999999999996 889999999996532   2234678999999999  99999986

>PHA02988 hypothetical protein; Provisional

Probab=97.44  E-value=0.00018  Score=73.50  Aligned_cols=53  Identities=15%  Similarity=0.295  Sum_probs=45.3

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||+|.+ +|..||||+++......   .+.|.+|+++|.+  |||||+++
T Consensus        27 ~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~   84 (283)
T PHA02988         27 LIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIY   84 (283)
T ss_pred             EEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            689999999999998 57899999997654333   4678899999999  99999986

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=97.38  E-value=0.00017  Score=80.81  Aligned_cols=55  Identities=35%  Similarity=0.451  Sum_probs=46.5

Q ss_pred             eeccCCceeeeeeee-cCC----ceEEEEeeccC-CCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYL-ADG----SEVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g----~~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      ++|.|.||+||||.| ++|    .+||||++... +.+..+||.+|+-.|++  |+||++|+.
T Consensus       703 vLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLg  765 (1177)
T KOG1025|consen  703 VLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLG  765 (1177)
T ss_pred             eeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhh
Confidence            899999999999997 455    37899998654 44557899999999999  999999974

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=97.37  E-value=0.00016  Score=72.71  Aligned_cols=54  Identities=26%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC-CCh-HHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGP-KQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~-~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.|||.+- +.|+.||||++.++.. +.. +--.+||++|++  |+|||.|+
T Consensus         9 kvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLi   67 (396)
T KOG0593|consen    9 KVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLI   67 (396)
T ss_pred             ccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            689999999999885 4689999999966543 333 446899999999  99999885

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=97.35  E-value=0.0002  Score=78.98  Aligned_cols=66  Identities=27%  Similarity=0.363  Sum_probs=52.4

Q ss_pred             CCchHHHhhccCCcceEEeeccCCceeeeeeeec--CCc--eEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCcccccC
Q 008008          509 SVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLA--DGS--EVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       509 ~iP~~l~~~~~~~~~~l~~iG~g~fg~Vykg~l~--~g~--~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      -||.+-++...       .+|+|.||.|++|.|.  +|.  .||||.|+..... ...+|.+|+.+|.+  |||||+|++
T Consensus       106 lIpee~i~l~e-------~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyG  178 (1039)
T KOG0199|consen  106 LIPEEQIKLYE-------LLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYG  178 (1039)
T ss_pred             eccHHHHHHHH-------HhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEee
Confidence            46655444433       6899999999999984  343  7899999876543 67899999999998  999999985

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.32  E-value=0.00026  Score=66.05  Aligned_cols=54  Identities=24%  Similarity=0.311  Sum_probs=44.7

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeecc--CCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSA--SSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~--~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|.+|+|+||+- +.++.||+|+.+.  ..++-...-.+||-+|+.  |+|||+|+
T Consensus         9 kigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~   67 (292)
T KOG0662|consen    9 KIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH   67 (292)
T ss_pred             hhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehh
Confidence            689999999999994 5678999998763  333445778999999998  99999985

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=97.21  E-value=0.00014  Score=80.44  Aligned_cols=54  Identities=31%  Similarity=0.545  Sum_probs=46.4

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|+ -..|+.||||..+..+ ....+...+|+++|+|  |+|||++.
T Consensus        20 ~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f   77 (732)
T KOG4250|consen   20 RLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLF   77 (732)
T ss_pred             hhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhc
Confidence            68999999999999 6789999999997644 3345678999999999  99999874

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=97.21  E-value=0.00027  Score=70.97  Aligned_cols=54  Identities=31%  Similarity=0.575  Sum_probs=44.3

Q ss_pred             eeccCCceeeeeeeec-----CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-----DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-----~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||.|.||.||+|.+.     .+..|+||.++.... ...++|.+|++.+++  |||||+++
T Consensus         6 ~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~   67 (259)
T PF07714_consen    6 QIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLY   67 (259)
T ss_dssp             EEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EE
T ss_pred             EEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccc
Confidence            6899999999999987     246899999965432 236899999999999  99999875

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=97.19  E-value=0.0004  Score=70.73  Aligned_cols=53  Identities=23%  Similarity=0.337  Sum_probs=43.1

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC-CC-hHHHHHHHHHHhc--CCCcccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QG-PKQFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~-~~ef~~Ei~~l~~--H~NlV~l  579 (581)
                      .|++|.||.||+|+- .+++.||+|+++.... .| .---.+||++|.+  |||||.+
T Consensus        83 rI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~v  140 (419)
T KOG0663|consen   83 RIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEV  140 (419)
T ss_pred             hcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeee
Confidence            689999999999995 4678999999985532 23 2356899999999  9999976

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=97.16  E-value=0.00035  Score=75.50  Aligned_cols=54  Identities=31%  Similarity=0.511  Sum_probs=44.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|.||.||||+-+ +...||+|.+.+..+  ...+...+||+++++  |||||.++
T Consensus         9 ~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~   67 (808)
T KOG0597|consen    9 MIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEML   67 (808)
T ss_pred             HhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHH
Confidence            6899999999999965 457899999865432  335668999999999  99999875

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=97.15  E-value=0.00047  Score=69.22  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=46.6

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|... ++..||+|.+.....+..+++.+|++++++  |+|||+++
T Consensus        15 ~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   71 (268)
T cd06624          15 VLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYL   71 (268)
T ss_pred             EEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeee
Confidence            7899999999999964 577899999876655566789999999999  99999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=97.15  E-value=0.00042  Score=70.22  Aligned_cols=55  Identities=31%  Similarity=0.465  Sum_probs=46.3

Q ss_pred             EeeccCCceeeeeeeec-----CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-----DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-----~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||++...     ++..||||+++.......++|.+|++++++  |||||+++
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   71 (284)
T cd05081          10 QQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYK   71 (284)
T ss_pred             eeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEE
Confidence            47999999999999853     477899999976655556789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=97.14  E-value=0.00065  Score=67.85  Aligned_cols=54  Identities=37%  Similarity=0.612  Sum_probs=46.5

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++...++..+|+|.+.... ...++|.+|++++++  |+||++++
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~   67 (260)
T cd05067          12 KKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLY   67 (260)
T ss_pred             eeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEE
Confidence            4799999999999999889999999996443 346789999999999  99998764

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.0002  Score=83.43  Aligned_cols=56  Identities=38%  Similarity=0.497  Sum_probs=45.7

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccC-CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.++|+||||.|||++= -||+.+|||++... +.+......+|+.+|++  |||+|+.+
T Consensus       484 L~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYy  543 (1351)
T KOG1035|consen  484 LELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYY  543 (1351)
T ss_pred             HHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence            44799999999999983 47999999998543 23334667899999999  99999875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.11  E-value=0.00035  Score=50.44  Aligned_cols=36  Identities=56%  Similarity=0.784  Sum_probs=22.4

Q ss_pred             CCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          471 SLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       471 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      +|+.|+|++|+++ .+|..+++|+.|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4666666666666 56666666666666666666665

...

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=97.07  E-value=0.00052  Score=77.64  Aligned_cols=54  Identities=22%  Similarity=0.452  Sum_probs=48.8

Q ss_pred             eeccCCceeeeeeeecCC-ceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADG-SEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g-~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .|-+|||+.||.+....+ ..+|+||+-...+++.+...+||++|++   |||||.++
T Consensus        44 vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yi  101 (738)
T KOG1989|consen   44 VLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYI  101 (738)
T ss_pred             EEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEe
Confidence            789999999999998766 9999999976677788999999999998   99999875

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=97.06  E-value=0.00061  Score=68.50  Aligned_cols=55  Identities=33%  Similarity=0.433  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeec----CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA----DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~----~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.+.    .+..||+|.++.... ...+.|.+|++++++  |||||+++
T Consensus        11 ~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   72 (266)
T cd05064          11 RILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLE   72 (266)
T ss_pred             eeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEE
Confidence            37899999999999863    356899999975432 224679999999999  99999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=97.06  E-value=0.00025  Score=75.12  Aligned_cols=50  Identities=26%  Similarity=0.522  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc----CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      ++|+|+||.||||+|.+ +.||||.+..   +..+.|++|-++.+-    |+||++++
T Consensus       217 li~~Grfg~V~KaqL~~-~~VAVKifp~---~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi  270 (534)
T KOG3653|consen  217 LIGRGRFGCVWKAQLDN-RLVAVKIFPE---QEKQSFQNEKNIYSLPGMKHENILQFI  270 (534)
T ss_pred             HhhcCccceeehhhccC-ceeEEEecCH---HHHHHHHhHHHHHhccCccchhHHHhh
Confidence            68999999999999985 8999999954   456779999888775    99999986

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=97.02  E-value=0.00066  Score=69.72  Aligned_cols=54  Identities=26%  Similarity=0.377  Sum_probs=43.0

Q ss_pred             eeccCCceeeeeeeecC-----------------CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-----------------GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-----------------g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++..++                 +..||+|.+..... ...++|.+|+++|.+  |||||+++
T Consensus        12 ~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   85 (304)
T cd05096          12 KLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLL   85 (304)
T ss_pred             EecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEE
Confidence            78999999999998643                 33699999875432 234689999999999  99999875

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=97.01  E-value=0.001  Score=66.33  Aligned_cols=54  Identities=28%  Similarity=0.402  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++.+.++..+|+|.++.. ....++|..|+++|++  ||||++++
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~   65 (256)
T cd05114          10 KELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLY   65 (256)
T ss_pred             eEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEE
Confidence            378999999999999988889999988633 3345789999999999  99999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=97.00  E-value=0.00056  Score=74.67  Aligned_cols=55  Identities=25%  Similarity=0.491  Sum_probs=45.2

Q ss_pred             eeccCCceeeeeeeecC---C--ceEEEEeeccC-CCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLAD---G--SEVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~---g--~~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      +||+|-||.||+|...+   |  ..||||.-+.+ .....+.|..|.-+|++  |||||+|++
T Consensus       396 ~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIG  458 (974)
T KOG4257|consen  396 LIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIG  458 (974)
T ss_pred             hhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheee
Confidence            89999999999999733   3  36889987653 33446889999999999  999999985

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=96.99  E-value=0.0011  Score=66.31  Aligned_cols=54  Identities=33%  Similarity=0.600  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||+|...++..||+|.++... ...++|.+|++++++  |+||++++
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~   67 (261)
T cd05068          12 RKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLY   67 (261)
T ss_pred             EEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCcccee
Confidence            4789999999999998878899999996543 346789999999999  99999764

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=96.96  E-value=0.0006  Score=71.20  Aligned_cols=55  Identities=25%  Similarity=0.420  Sum_probs=43.3

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++..      .++..||||+++.... ...+.+.+|+++|.+   |||||+++
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~   77 (338)
T cd05102          13 KVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLL   77 (338)
T ss_pred             eEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEE
Confidence            3789999999999974      2346799999975432 234679999999987   99999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=96.96  E-value=0.00092  Score=71.27  Aligned_cols=54  Identities=28%  Similarity=0.449  Sum_probs=42.9

Q ss_pred             eeccCCceeeeeeee------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++..      +.+..||||+++.... ...+.+.+|+++|.+   |||||+++
T Consensus        42 ~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~  105 (375)
T cd05104          42 TLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLL  105 (375)
T ss_pred             eecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeee
Confidence            789999999999874      2356899999975432 334678999999986   99999875

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=96.95  E-value=0.0011  Score=66.20  Aligned_cols=54  Identities=31%  Similarity=0.583  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||+|...++..||+|.+.... ...++|.+|++++++  |+||++++
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~   67 (261)
T cd05072          12 KKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT-MSVQAFLEEANLMKTLQHDKLVRLY   67 (261)
T ss_pred             eecCCcCCceEEEEEecCCceEEEEEccCCc-hhHHHHHHHHHHHHhCCCCCeeeEE
Confidence            3789999999999998888899999986532 346789999999999  99999874

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=96.94  E-value=0.001  Score=71.70  Aligned_cols=54  Identities=28%  Similarity=0.428  Sum_probs=42.8

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||+|...      .+..||||+++..... ..+.|.+|+++|++   |||||+++
T Consensus        44 ~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~  107 (400)
T cd05105          44 ILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLL  107 (400)
T ss_pred             eecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEE
Confidence            7899999999999852      1346999999754332 34679999999997   99999986

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=96.90  E-value=0.00099  Score=69.64  Aligned_cols=55  Identities=31%  Similarity=0.519  Sum_probs=43.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC--C---hHH--HHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--G---PKQ--FRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~---~~e--f~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.|-.|.- .+|..||||.++.....  .   .++  ..+|+++|++  |||||+++
T Consensus       178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~  242 (475)
T KOG0615|consen  178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIK  242 (475)
T ss_pred             eeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEe
Confidence            3789999999999884 57899999999753211  1   122  3699999999  99999875

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=96.90  E-value=0.0011  Score=68.50  Aligned_cols=55  Identities=33%  Similarity=0.558  Sum_probs=43.8

Q ss_pred             EeeccCCceeeeeeeec-CCc----eEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGS----EVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~----~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||+|.+. ++.    .||||.++.... ...++|.+|+.++++  |||||+++
T Consensus        13 ~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~   75 (316)
T cd05108          13 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL   75 (316)
T ss_pred             eeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            47999999999999863 343    489999975432 345789999999999  99999875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=96.89  E-value=0.0016  Score=66.48  Aligned_cols=55  Identities=25%  Similarity=0.336  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||+|.++... .+....+.+|++++++  |||||+++
T Consensus        11 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   69 (288)
T cd07871          11 DKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLH   69 (288)
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEE
Confidence            47999999999999864 67899999986443 2334678899999999  99999874

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=96.88  E-value=0.0016  Score=65.27  Aligned_cols=54  Identities=19%  Similarity=0.352  Sum_probs=45.4

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|.. .++..||+|+++.......+.+.+|+.++.+  |+||++++
T Consensus        16 ~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~   72 (267)
T cd06646          16 RVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYF   72 (267)
T ss_pred             eeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeee
Confidence            689999999999996 5678999999975544445678899999998  99999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=96.88  E-value=0.0013  Score=69.44  Aligned_cols=54  Identities=24%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++... +|..||||.+...... ..++|.+|++++++  |+|||+++
T Consensus        81 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~  138 (353)
T PLN00034         81 RIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCH  138 (353)
T ss_pred             hccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceee
Confidence            6899999999999864 6889999998644322 24679999999999  99999875

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=96.87  E-value=0.0016  Score=67.16  Aligned_cols=52  Identities=21%  Similarity=0.322  Sum_probs=42.5

Q ss_pred             eeccCCceeeeeeeec---CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA---DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++...   ++..+|+|.++..  ....++.+|+++|++  |||||+++
T Consensus         8 ~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~   64 (317)
T cd07868           8 KVGRGTYGHVYKAKRKDGKDDRDYALKQIEGT--GISMSACREIALLRELKHPNVISLQ   64 (317)
T ss_pred             ccccCCCeEEEEEEEccCCCCceEEEEEECCC--CCcHHHHHHHHHHHhcCCCCCccee
Confidence            6899999999999864   4568999998643  234568899999999  99999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=96.86  E-value=0.0016  Score=64.96  Aligned_cols=53  Identities=30%  Similarity=0.564  Sum_probs=45.7

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++..+++..+|+|.++.... ..++|.+|++++++  |+|+++++
T Consensus        13 ~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~   67 (260)
T cd05070          13 KLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLY   67 (260)
T ss_pred             eeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEE
Confidence            6899999999999988888999999975433 45789999999999  99998864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=96.86  E-value=0.0016  Score=65.16  Aligned_cols=54  Identities=31%  Similarity=0.456  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||++...++..+|||.++.. ....++|.+|++++.+  ||||++++
T Consensus        10 ~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~   65 (256)
T cd05113          10 KELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMKLSHEKLVQLY   65 (256)
T ss_pred             eEecCcccceEEEEEecCCCcEEEEEcCCC-cccHHHHHHHHHHHhcCCCCCeeeEE
Confidence            368999999999999887778999998643 2345789999999999  99999875

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.85  E-value=0.00022  Score=66.28  Aligned_cols=66  Identities=30%  Similarity=0.504  Sum_probs=49.7

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC-CCchHH
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG-SVPTSL  514 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G-~iP~~l  514 (581)
                      .+..|++++|++. .+|.+++.++.|+.|+++-|.+. .+|..++.++.|++|||++|+++- .+|..+
T Consensus        57 nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnf  123 (264)
T KOG0617|consen   57 NLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNF  123 (264)
T ss_pred             hhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcch
Confidence            4566777777766 57777777888888888877776 678888888888888888888864 456554

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=96.84  E-value=0.0019  Score=64.40  Aligned_cols=53  Identities=30%  Similarity=0.547  Sum_probs=45.9

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++..+++..+|||.++... ...+++.+|++++++  |+||++++
T Consensus        13 ~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~   67 (261)
T cd05034          13 KLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLY   67 (261)
T ss_pred             eeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeee
Confidence            789999999999998888899999997532 346789999999999  99999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=96.83  E-value=0.0013  Score=70.88  Aligned_cols=54  Identities=24%  Similarity=0.405  Sum_probs=43.3

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCCCCC-hHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQG-PKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~~-~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++.+.      .+..||||+++...... .+.+..|+++|.+   |||||+++
T Consensus        44 ~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~  107 (401)
T cd05107          44 TLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLL  107 (401)
T ss_pred             hccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            6899999999999864      23579999997543332 4579999999997   99999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=96.83  E-value=0.0012  Score=66.59  Aligned_cols=54  Identities=35%  Similarity=0.542  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeeecC------CceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD------GSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|...+      +..||||.++..... ..++|.+|+++|.+  |+||++++
T Consensus        12 ~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   74 (280)
T cd05049          12 ELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFY   74 (280)
T ss_pred             hccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchhee
Confidence            68999999999998743      368999999765444 45789999999999  99999875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PRK09188 serine/threonine protein kinase; Provisional

Probab=96.83  E-value=0.0017  Score=68.99  Aligned_cols=52  Identities=21%  Similarity=0.314  Sum_probs=41.2

Q ss_pred             eeccCCceeeeeeeec--CCceEEEEeeccCC-----CCChHHHHHHHHHHhc--CCCccc
Q 008008          527 ILGKGGFGTVYHGYLA--DGSEVAIKMLSASS-----SQGPKQFRTEVELIDY--YKNLSP  578 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~--~g~~VAVK~l~~~~-----~~~~~ef~~Ei~~l~~--H~NlV~  578 (581)
                      .||+|+||.||+|...  ++..+|||++....     ....+.|.+|+++|++  |+|+|+
T Consensus        25 ~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~   85 (365)
T PRK09188         25 VLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVP   85 (365)
T ss_pred             EEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCc
Confidence            7899999999999864  57788999875321     1124568999999999  999985

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=96.81  E-value=0.0012  Score=70.90  Aligned_cols=54  Identities=31%  Similarity=0.550  Sum_probs=45.8

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++|.|.||.||-|+- ..|+.||||.+.+..  .....++.+|+.+|.+  ||.||.|.
T Consensus       571 vLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le  629 (888)
T KOG4236|consen  571 VLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLE  629 (888)
T ss_pred             hccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEE
Confidence            789999999999996 579999999997543  2334678999999999  99999875

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=96.81  E-value=0.0016  Score=67.48  Aligned_cols=55  Identities=25%  Similarity=0.469  Sum_probs=46.0

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      ++|+|.||.||.+...+ |...|||..........+.+.+|+++|++  |||||+.++
T Consensus        24 ~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G   81 (313)
T KOG0198|consen   24 LLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYG   81 (313)
T ss_pred             cccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCC
Confidence            78999999999999754 88999999865432236779999999999  999999764

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=96.81  E-value=0.0018  Score=64.92  Aligned_cols=54  Identities=35%  Similarity=0.450  Sum_probs=43.6

Q ss_pred             eeccCCceeeeeeeecC----CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD----GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|++..    ...||||.++.... ...++|.+|++++++  |+||++++
T Consensus        11 ~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   71 (266)
T cd05033          11 VIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLE   71 (266)
T ss_pred             EecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEe
Confidence            78999999999999843    35799999865432 234689999999999  99999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.79  E-value=0.00059  Score=72.43  Aligned_cols=53  Identities=28%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCCCCChHHH--HHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQF--RTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~~~~ef--~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|.|.||.||+|+ .+.|..||||+++... ...+|.  .+|++.|++   |||||+|.
T Consensus        17 klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf-~s~ee~~nLREvksL~kln~hpniikL~   75 (538)
T KOG0661|consen   17 KLGDGTFGSVYLAKSKETGELVAIKKMKKKF-YSWEECMNLREVKSLRKLNPHPNIIKLK   75 (538)
T ss_pred             HhcCCcceeEEEeeecCCCceeeHHHHHhhh-ccHHHHHHHHHHHHHHhcCCCCcchhhH
Confidence            68999999999999 5678899999996542 234554  689999999   99999874

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=96.78  E-value=0.0018  Score=67.37  Aligned_cols=55  Identities=22%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|.- .+|..||||+++...  .....++.+|++++++  |||||+++
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~   65 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIK   65 (338)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeec
Confidence            3789999999999985 468899999986432  2334678999999999  99999864

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=96.78  E-value=0.0015  Score=66.14  Aligned_cols=55  Identities=31%  Similarity=0.407  Sum_probs=44.3

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||+|..     +++..+|+|.+.... .+..++|.+|++++++  |+|||+++
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   73 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLL   73 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEE
Confidence            4789999999999985     345789999997433 2334689999999999  99999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=96.78  E-value=0.002  Score=64.60  Aligned_cols=54  Identities=31%  Similarity=0.529  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||+|...+...||+|.++.. ....++|.+|++++++  |+||++++
T Consensus        12 ~~lg~g~~~~v~~~~~~~~~~valK~~~~~-~~~~~~~~~E~~~l~~l~~~~i~~~~   67 (262)
T cd05071          12 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLY   67 (262)
T ss_pred             eecCCCCCCcEEEEEecCCceEEEEecccC-ccCHHHHHHHHHHHHhCCCCCcceEE
Confidence            378999999999999877778999999643 2345789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=96.77  E-value=0.0015  Score=69.30  Aligned_cols=54  Identities=24%  Similarity=0.348  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.- .+|..||||++....  ....+++.+|+++|++  |+|||+++
T Consensus         7 ~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   65 (372)
T cd07853           7 PIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSAL   65 (372)
T ss_pred             eeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHh
Confidence            689999999999985 578899999986432  2335678999999998  99999875

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=96.77  E-value=0.0013  Score=70.15  Aligned_cols=56  Identities=20%  Similarity=0.309  Sum_probs=45.4

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +..||+|+||.||++.. .++..+|||++....   ....+++.+|+++|.+  |+|||+++
T Consensus         6 ~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~   67 (381)
T cd05626           6 IKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLY   67 (381)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeE
Confidence            34799999999999986 467899999996432   2335678999999999  99999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=96.75  E-value=0.0014  Score=67.06  Aligned_cols=55  Identities=15%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||+|++....   ....+.+.+|++++++  ||||++++
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   67 (291)
T cd05612           7 KTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLF   67 (291)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhH
Confidence            47899999999999975 67899999986432   2235678999999999  99999874

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=96.75  E-value=0.0021  Score=66.21  Aligned_cols=52  Identities=23%  Similarity=0.323  Sum_probs=42.3

Q ss_pred             eeccCCceeeeeeeecC---CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD---GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~---g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++...+   +..+|+|.++..  ....++.+|+++|++  |||||+++
T Consensus         8 ~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~--~~~~~~~~E~~~l~~l~h~niv~~~   64 (317)
T cd07867           8 KVGRGTYGHVYKAKRKDGKDEKEYALKQIEGT--GISMSACREIALLRELKHPNVIALQ   64 (317)
T ss_pred             EeccCCCeeEEEEEecCCCccceEEEEEecCC--CCcHHHHHHHHHHHhCCCCCeeeEE
Confidence            68999999999999753   468999998643  224578899999999  99999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=96.74  E-value=0.0017  Score=66.08  Aligned_cols=55  Identities=29%  Similarity=0.408  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .+|..||||.+....   .+....+.+|++++++  |+|||+++
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~   66 (285)
T cd05631           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLA   66 (285)
T ss_pred             EEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEE
Confidence            4799999999999986 578899999986432   2334568899999999  99999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=96.74  E-value=0.0015  Score=65.21  Aligned_cols=54  Identities=31%  Similarity=0.519  Sum_probs=47.5

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|+||.||+|...++..+|+|.+.........++.+|++++++  |+||++++
T Consensus        13 ~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   68 (261)
T cd05148          13 KLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLF   68 (261)
T ss_pred             hhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhhee
Confidence            6899999999999998889999999976655556789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=96.74  E-value=0.0005  Score=67.14  Aligned_cols=54  Identities=37%  Similarity=0.432  Sum_probs=45.1

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|.||.||.|+-+ ++-.||+|++..+.   .+-.+++.+||++-+.  ||||.+|+
T Consensus        29 ~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY   88 (281)
T KOG0580|consen   29 PLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLY   88 (281)
T ss_pred             cccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhh
Confidence            6899999999999975 45689999996542   3446789999999998  99999886

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=96.74  E-value=0.0011  Score=68.50  Aligned_cols=57  Identities=21%  Similarity=0.415  Sum_probs=47.4

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCcccccC
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      +++||+|+||+||..+- +.++..|.|+|+...   ....+...+|.++|.+  ||.||.|+|
T Consensus        30 lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~y   92 (357)
T KOG0598|consen   30 LKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIY   92 (357)
T ss_pred             eeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEE
Confidence            45899999999999886 457789999997543   3346778999999999  999999976

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=96.72  E-value=0.0018  Score=67.54  Aligned_cols=55  Identities=22%  Similarity=0.228  Sum_probs=45.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.++..   .....+.+.+|+++|++  |||||+++
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   84 (329)
T PTZ00263         24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMM   84 (329)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEE
Confidence            47999999999999975 5789999998643   22345678999999999  99999875

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=96.72  E-value=0.0025  Score=65.38  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..||||.++.... .....+.+|++++++  |||||+++
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   69 (303)
T cd07869          11 EKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLH   69 (303)
T ss_pred             eeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEE
Confidence            47899999999999975 678999999865432 234567899999999  99999874

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=96.70  E-value=0.00084  Score=73.19  Aligned_cols=54  Identities=28%  Similarity=0.397  Sum_probs=46.8

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .+|-|.+|.||.|.|.. ...||||.|+++. ...+||..|..+|+.  |||||+|++
T Consensus       274 KLGGGQYGeVYeGvWKkyslTvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLG  330 (1157)
T KOG4278|consen  274 KLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLG  330 (1157)
T ss_pred             ccCCCcccceeeeeeeccceeeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhh
Confidence            57999999999999964 5689999998653 357899999999999  999999974

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=96.70  E-value=0.0027  Score=65.42  Aligned_cols=55  Identities=25%  Similarity=0.332  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||+|... ++..||+|+++.... .....+.+|++++++  ||||++++
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   70 (309)
T cd07872          12 EKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLH   70 (309)
T ss_pred             EEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEE
Confidence            47899999999999864 567899999875432 334578899999999  99999875

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=96.70  E-value=0.0016  Score=65.34  Aligned_cols=54  Identities=33%  Similarity=0.422  Sum_probs=43.5

Q ss_pred             eeccCCceeeeeeeec----CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA----DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~----~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.+.    .+..||||++....  ....+++.+|+++|++  |||||+++
T Consensus         6 ~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   67 (273)
T cd05074           6 MLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLI   67 (273)
T ss_pred             cccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEE
Confidence            6899999999999863    35789999986432  2235679999999999  99999874

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=96.70  E-value=0.0021  Score=63.76  Aligned_cols=54  Identities=33%  Similarity=0.557  Sum_probs=44.7

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC-----CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-----SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-----~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|++|.||+|... ++..|++|.+....     .+..++|.+|++++++  |+||++++
T Consensus         7 ~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   68 (258)
T cd06632           7 LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYL   68 (258)
T ss_pred             eeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchhee
Confidence            6899999999999986 78899999886432     1235689999999999  99999864

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=96.70  E-value=0.0018  Score=67.60  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||+++...   ....+++.+|++++.+  |||||+++
T Consensus         7 ~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~   67 (333)
T cd05600           7 TQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLL   67 (333)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEE
Confidence            47999999999999975 57899999996432   2345678999999999  99999875

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.69  E-value=0.00047  Score=64.10  Aligned_cols=69  Identities=29%  Similarity=0.436  Sum_probs=44.4

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCC-CccccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      +.+..|++.-|.|. .+|..|+.++.|+.|||+.|+++- .+|..+.-++.|+.|+|+.|.|. -+|..+.+
T Consensus        79 ~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~  148 (264)
T KOG0617|consen   79 PKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK  148 (264)
T ss_pred             hhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh
Confidence            55666666666665 456677777777777777777653 35666666667777777777765 45555433

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=96.68  E-value=0.0018  Score=68.06  Aligned_cols=54  Identities=26%  Similarity=0.381  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeee------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++..      .+++.||||+++.... ...+.+.+|+++|.+   |+|||+++
T Consensus        14 ~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~   77 (343)
T cd05103          14 PLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   77 (343)
T ss_pred             cccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhc
Confidence            689999999999973      4567899999975432 234678899999988   89999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=96.68  E-value=0.0028  Score=63.39  Aligned_cols=54  Identities=31%  Similarity=0.565  Sum_probs=44.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCC------ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQ------GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~------~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|...+|..+|||.++.....      ..+.+.+|+++|++  |+||++++
T Consensus         7 ~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   68 (265)
T cd06631           7 VLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYL   68 (265)
T ss_pred             eEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEe
Confidence            68999999999999888899999988643211      13568899999999  99999864

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=96.68  E-value=0.0023  Score=64.50  Aligned_cols=54  Identities=30%  Similarity=0.439  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeeeec-----CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-----DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-----~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++.+.     .+..+|||.++..... ..++|.+|++++++  |+||++++
T Consensus        11 ~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~   72 (284)
T cd05038          11 QLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYK   72 (284)
T ss_pred             eeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEE
Confidence            6899999999999974     3578999999755332 46789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=96.68  E-value=0.0028  Score=62.94  Aligned_cols=54  Identities=28%  Similarity=0.500  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||++...++..+|+|.++.. .....+|.+|++++.+  |||+++++
T Consensus        10 ~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (256)
T cd05112          10 QEIGSGQFGLVWLGYWLEKRKVAIKTIREG-AMSEEDFIEEAQVMMKLSHPKLVQLY   65 (256)
T ss_pred             eeecCcccceEEEEEEeCCCeEEEEECCCC-CCCHHHHHHHHHHHHhCCCCCeeeEE
Confidence            378999999999999877889999998643 2345789999999999  99999874

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=96.67  E-value=0.0022  Score=64.84  Aligned_cols=55  Identities=27%  Similarity=0.410  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeecC-----CceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-----GSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-----g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...+     +..|++|++...... ..+.+.+|++++++  |+||++++
T Consensus        12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~   74 (280)
T cd05043          12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPIL   74 (280)
T ss_pred             eeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            378999999999999865     678999998654322 25678999999998  99999864

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=96.67  E-value=0.0029  Score=64.11  Aligned_cols=55  Identities=20%  Similarity=0.283  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||+++.. ++..+|||+++...  ....+.+.+|++++.+  |+|||+++
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   66 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELK   66 (287)
T ss_pred             EEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchh
Confidence            47899999999999975 57789999986432  2335678899999999  99999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=96.67  E-value=0.0016  Score=69.54  Aligned_cols=56  Identities=20%  Similarity=0.301  Sum_probs=45.2

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||++.. .++..+|+|.+....   ....+.+.+|++++++  |+|||+++
T Consensus         6 ~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~   67 (382)
T cd05625           6 IKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLY   67 (382)
T ss_pred             EEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEE
Confidence            45799999999999986 467899999986432   2234678999999999  99999885

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=96.66  E-value=0.0018  Score=64.88  Aligned_cols=54  Identities=28%  Similarity=0.412  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeeecC----CceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD----GSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|.+..    +..||||+++...  .....+|.+|++.+++  |+|||+++
T Consensus         6 ~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   67 (273)
T cd05035           6 ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLI   67 (273)
T ss_pred             ccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            68999999999999743    2579999987432  2234689999999998  99999865

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=96.65  E-value=0.0024  Score=63.44  Aligned_cols=52  Identities=33%  Similarity=0.510  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||++... |..||||.++.... ..+++.+|++++++  |+||++++
T Consensus        13 ~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~   66 (256)
T cd05039          13 TIGKGEFGDVMLGDYR-GQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLL   66 (256)
T ss_pred             eeecCCCceEEEEEec-CcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeE
Confidence            7899999999999875 78899999975533 56789999999999  99999875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=96.64  E-value=0.0024  Score=63.86  Aligned_cols=54  Identities=24%  Similarity=0.390  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++...++..+|+|.++... ...+.|.+|++++++  |+||+++.
T Consensus        12 ~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~   67 (260)
T cd05073          12 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLH   67 (260)
T ss_pred             eEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEE
Confidence            3789999999999998888889999886432 235689999999999  99999864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.64  E-value=0.0017  Score=71.07  Aligned_cols=130  Identities=21%  Similarity=0.307  Sum_probs=64.8

Q ss_pred             eEEEEEeecCCCCcChHHH---HHHhhhhhccCCCCCCcchhhhhhhhhhhccCCCCC--CCCCCCCCcccccCccCCCC
Q 008008          367 KLNFSLCKTSNSTLPPILN---AIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGW--QGDPCSPMYYSWDGLNCSYN  441 (581)
Q Consensus       367 ~~~isl~~t~~s~lp~~ln---~le~~~l~~~~~~~t~~~d~~aL~~~k~~~~~~~~W--~g~pC~~~~~~W~Gv~C~~~  441 (581)
                      .-++++..|.-..+|-.|.   .+|.+.+..+ +..+.-.+...|-.+++.....++-  .|-|-.  .+          
T Consensus        34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d--iF----------  100 (1255)
T KOG0444|consen   34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD--IF----------  100 (1255)
T ss_pred             eeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHHhhhccccccCCCCch--hc----------
Confidence            4578888887777775554   4566666554 2222222222222222211111111  111110  00          


Q ss_pred             CCCCCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcccccc-CCCccccccccCccCCCCCchHH
Q 008008          442 GYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS-QLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       442 ~~~~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~-~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                        ....++.|+||.|+|. .+|..+..-+++-.|+||+|++. +||..+. +|+.|-.||||+|.|. .+|+.+
T Consensus       101 --~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~  169 (1255)
T KOG0444|consen  101 --RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQI  169 (1255)
T ss_pred             --ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHH
Confidence              1234566666666665 45666666666666666666665 5555443 5566666666666665 455544

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=96.61  E-value=0.0018  Score=68.84  Aligned_cols=55  Identities=24%  Similarity=0.334  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..||||.+...   .....+++.+|++++++  |||||+++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~   67 (377)
T cd05629           7 KVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLY   67 (377)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            4789999999999885 46789999998542   22335678999999999  99999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=96.60  E-value=0.0019  Score=68.25  Aligned_cols=55  Identities=24%  Similarity=0.359  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|+.||||+++...   ....+.+.+|+++|.+  |+|||+++
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~   67 (364)
T cd05599           7 KVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLY   67 (364)
T ss_pred             EEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceE
Confidence            47999999999999964 67899999996431   2234668899999999  99999875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=96.59  E-value=0.0021  Score=64.54  Aligned_cols=54  Identities=28%  Similarity=0.428  Sum_probs=43.0

Q ss_pred             eeccCCceeeeeeeecCC-c--eEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADG-S--EVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g-~--~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...+. .  .+|+|.++..  +....++|..|++++++  |+|||+++
T Consensus         6 ~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   66 (272)
T cd05075           6 TLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI   66 (272)
T ss_pred             ccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            689999999999998543 2  6899988643  22335789999999999  99999874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=96.59  E-value=0.0025  Score=64.45  Aligned_cols=54  Identities=30%  Similarity=0.400  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeeecC------CceEEEEeeccCCCCC-hHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD------GSEVAIKMLSASSSQG-PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~~~-~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|...+      +..||||+++....+. .++|.+|++++++  |||||+++
T Consensus        12 ~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~   74 (283)
T cd05091          12 ELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLL   74 (283)
T ss_pred             HhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEE
Confidence            58999999999998632      4689999997543332 3568999999998  99999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.58  E-value=0.0026  Score=69.28  Aligned_cols=56  Identities=32%  Similarity=0.403  Sum_probs=46.7

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCCh---HHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGP---KQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~---~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++-||.|+||.||.+.- .+...||||+++.+..|..   ++...||..|.+  |||+|...
T Consensus        31 LrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYk   92 (948)
T KOG0577|consen   31 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYK   92 (948)
T ss_pred             HHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCccccc
Confidence            34799999999999985 4567899999988777764   567899999999  99999754

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=96.57  E-value=0.0024  Score=66.93  Aligned_cols=54  Identities=24%  Similarity=0.301  Sum_probs=43.9

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.. .++..||||++....  ....+++.+|+++|++  |+|||+++
T Consensus        22 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   80 (343)
T cd07878          22 PVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLL   80 (343)
T ss_pred             ecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhh
Confidence            789999999999985 467899999986432  2234678899999999  99999875

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=96.57  E-value=0.0022  Score=64.43  Aligned_cols=54  Identities=30%  Similarity=0.436  Sum_probs=43.4

Q ss_pred             eeccCCceeeeeeeecC-C---ceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-G---SEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g---~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|.... +   ..||||.++... ....++|..|++++++  ||||++++
T Consensus        11 ~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~   71 (269)
T cd05065          11 VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLE   71 (269)
T ss_pred             EecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEE
Confidence            78999999999999743 3   369999986542 2335789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=96.52  E-value=0.0029  Score=64.03  Aligned_cols=55  Identities=29%  Similarity=0.401  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||++.. .++..+|+|.+.... ....++|.+|++++++  ||||++++
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   65 (279)
T cd06619           7 EILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFY   65 (279)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            3689999999999985 567899999986432 2334679999999998  99999875

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=96.52  E-value=0.0037  Score=62.42  Aligned_cols=53  Identities=34%  Similarity=0.583  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|++|.||++...++..+|+|.+.... ...+.|.+|++++++  |+|+++++
T Consensus        13 ~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~   67 (260)
T cd05069          13 KLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLY   67 (260)
T ss_pred             eecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEE
Confidence            689999999999998877789999986543 345679999999999  99999864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=96.52  E-value=0.0029  Score=63.60  Aligned_cols=55  Identities=25%  Similarity=0.427  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||+++..      +...+++|.+.....+ ..++|.+|++++++  |+|||+++
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   74 (275)
T cd05046          11 TTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLL   74 (275)
T ss_pred             eeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeE
Confidence            47899999999999964      2357999988654433 35789999999999  99999875

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=96.51  E-value=0.0033  Score=64.46  Aligned_cols=54  Identities=26%  Similarity=0.371  Sum_probs=45.9

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.. .++..||+|.++.......+.+.+|++++.+  ||||++++
T Consensus        28 ~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~   84 (297)
T cd06659          28 KIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMY   84 (297)
T ss_pred             hcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhh
Confidence            689999999999986 4688999999976555556789999999998  99999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=96.51  E-value=0.0033  Score=66.33  Aligned_cols=55  Identities=27%  Similarity=0.352  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- ..|..||||++...  .....+++.+|++++++  |||||+++
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   86 (359)
T cd07876          27 KPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLL   86 (359)
T ss_pred             EEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeee
Confidence            4799999999999985 45789999998643  22345678899999998  99999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=96.50  E-value=0.0042  Score=65.12  Aligned_cols=55  Identities=27%  Similarity=0.355  Sum_probs=46.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||.|+||.||+|.. .+|..||+|.+........+.+.+|++++++  ||||++++
T Consensus        11 ~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~   68 (342)
T cd07854          11 RPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVY   68 (342)
T ss_pred             EEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhH
Confidence            4789999999999986 4678999999876555566789999999999  99999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=96.49  E-value=0.003  Score=67.31  Aligned_cols=54  Identities=30%  Similarity=0.429  Sum_probs=42.3

Q ss_pred             eeccCCceeeeeeee------cCCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL------ADGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|+|+||.||++..      .++..||||+++..... ..+.+.+|++++++   |+|||+++
T Consensus        45 ~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~  108 (374)
T cd05106          45 TLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLL  108 (374)
T ss_pred             eecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEe
Confidence            789999999999873      23457999999754332 24568899999986   99999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=96.48  E-value=0.0034  Score=63.89  Aligned_cols=55  Identities=29%  Similarity=0.416  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..||||.+....   ......+.+|++++++  |+|||+++
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   66 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLA   66 (285)
T ss_pred             EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeee
Confidence            4789999999999986 467899999986432   2234567899999999  99999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=96.47  E-value=0.0027  Score=63.79  Aligned_cols=54  Identities=22%  Similarity=0.373  Sum_probs=43.4

Q ss_pred             eeccCCceeeeeeeecCC----ceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADG----SEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g----~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|...+.    ..||||...... .+..++|.+|++++++  ||||++++
T Consensus        13 ~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   73 (270)
T cd05056          13 CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLI   73 (270)
T ss_pred             eeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhcee
Confidence            789999999999987432    468999886543 2345689999999999  99999875

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>PTZ00036 glycogen synthase kinase; Provisional

Probab=96.47  E-value=0.0038  Score=68.18  Aligned_cols=51  Identities=27%  Similarity=0.410  Sum_probs=41.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.. ..+..||||++...    .....+|+++|++  |+|||+++
T Consensus        72 ~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~----~~~~~~Ei~il~~l~h~niv~l~  125 (440)
T PTZ00036         72 NIIGNGSFGVVYEAICIDTSEKVAIKKVLQD----PQYKNRELLIMKNLNHINIIFLK  125 (440)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEecC----cchHHHHHHHHHhcCCCCCccee
Confidence            4799999999999997 46789999988532    2334579999999  99999863

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=96.46  E-value=0.0049  Score=62.27  Aligned_cols=55  Identities=24%  Similarity=0.383  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||++... +|..||||+++...  ....+.+.+|++++++  ||||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   65 (284)
T cd07860           6 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLL   65 (284)
T ss_pred             eeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchh
Confidence            36899999999999864 67899999986432  2234679999999999  99999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.45  E-value=0.00098  Score=72.81  Aligned_cols=69  Identities=33%  Similarity=0.453  Sum_probs=61.9

Q ss_pred             CCceeEeecCCCCCc-eecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHH
Q 008008          445 PPKIISLNLTSEGLT-GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~-G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      ++++.++.+..|+|. ..||+.+..|..|+.||||+|+|. .+|..+....++.+|+||+|++. +||..++
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lf  146 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLF  146 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHH
Confidence            467888889999984 458999999999999999999998 89999999999999999999997 8998864

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=96.45  E-value=0.0033  Score=64.07  Aligned_cols=54  Identities=24%  Similarity=0.415  Sum_probs=45.9

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|+||.||+|+.. ++..+++|.+........++|.+|++++++  |+||++++
T Consensus        19 ~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   75 (292)
T cd06644          19 ELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLL   75 (292)
T ss_pred             eecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeE
Confidence            6899999999999975 478999999976554556789999999998  99999865

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=96.45  E-value=0.0033  Score=67.23  Aligned_cols=54  Identities=30%  Similarity=0.442  Sum_probs=45.6

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCCCC---ChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQ---GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|.|.||.||+++-.. |..+|+|.+......   ......+|+++|.+   |||||.|+
T Consensus        42 ~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~  102 (382)
T KOG0032|consen   42 ELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLK  102 (382)
T ss_pred             hhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEE
Confidence            78999999999999754 899999999755443   34689999999999   99999875

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=96.45  E-value=0.0039  Score=61.69  Aligned_cols=54  Identities=31%  Similarity=0.516  Sum_probs=45.3

Q ss_pred             eeccCCceeeeeeeecC-----CceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-----GSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-----g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|+||.||++...+     +..||+|+++..... ..+.+..|++++.+  |+||++++
T Consensus         6 ~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   67 (258)
T smart00219        6 KLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLL   67 (258)
T ss_pred             eeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEE
Confidence            68999999999999754     378999999765444 56789999999998  99999875

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=96.44  E-value=0.0045  Score=63.43  Aligned_cols=55  Identities=27%  Similarity=0.365  Sum_probs=46.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||++.. .++..||+|.+........+.+.+|+.++++  |+||++++
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   82 (297)
T cd06656          25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYL   82 (297)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4789999999999985 5788999999976555556778999999998  99999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=96.43  E-value=0.0052  Score=62.35  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=40.4

Q ss_pred             EeeccCCceeeeeeee--cCCceEEEEeeccCC--CCChHHHHHHHHHHhc-----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL--ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l--~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      ..||+|+||.||++..  .++..||||+++...  ......+.+|++++++     |||||+++
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~   70 (290)
T cd07862           7 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLF   70 (290)
T ss_pred             eEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEE
Confidence            3689999999999985  346789999986432  2223466677766653     99999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=96.43  E-value=0.0035  Score=65.64  Aligned_cols=55  Identities=24%  Similarity=0.399  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... +|..||||+++...   ....+.+.+|++++.+  |+||++++
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   67 (350)
T cd05573           7 KVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLY   67 (350)
T ss_pred             EEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchh
Confidence            47899999999999975 68899999986432   2345678999999999  99999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=96.43  E-value=0.0035  Score=65.96  Aligned_cols=55  Identities=27%  Similarity=0.372  Sum_probs=43.9

Q ss_pred             EeeccCCceeeeeeeecC--CceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD--GSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~--g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...+  +..||+|++...   .....+++.+|++++++  |||||+++
T Consensus        36 ~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~   97 (340)
T PTZ00426         36 RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLY   97 (340)
T ss_pred             EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceE
Confidence            479999999999998643  358999998543   22345678999999999  99999875

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=96.42  E-value=0.0036  Score=63.72  Aligned_cols=55  Identities=29%  Similarity=0.402  Sum_probs=43.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..+|+|.++...   ....+.+.+|+++|.+  |+||++++
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~   66 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLA   66 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEE
Confidence            4689999999999987 467899999986432   2234567899999999  99999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=96.41  E-value=0.0044  Score=62.01  Aligned_cols=54  Identities=20%  Similarity=0.379  Sum_probs=45.1

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++.. .++..+|+|.++.........+.+|+.++.+  ||||++++
T Consensus        16 ~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~   72 (267)
T cd06645          16 RIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYF   72 (267)
T ss_pred             HhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            689999999999986 4678999999876544455678899999998  99999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=96.41  E-value=0.0058  Score=62.60  Aligned_cols=55  Identities=27%  Similarity=0.349  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||+|.++.... .....+.+|++++++  |+||++++
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~   70 (301)
T cd07873          12 DKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLH   70 (301)
T ss_pred             eEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEE
Confidence            47899999999999864 578999999864432 334578899999999  99999875

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=96.40  E-value=0.004  Score=63.73  Aligned_cols=54  Identities=24%  Similarity=0.348  Sum_probs=45.6

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++.. .++..||||++.....+....+.+|+.++++  |+||++++
T Consensus        27 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   83 (292)
T cd06657          27 KIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY   83 (292)
T ss_pred             HcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhhee
Confidence            689999999999987 4688999999865544456679999999998  99999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=96.40  E-value=0.0034  Score=63.52  Aligned_cols=54  Identities=24%  Similarity=0.433  Sum_probs=45.1

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|... ++..+++|.+.....+..+.|.+|++++++  ||||++++
T Consensus        12 ~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~   68 (282)
T cd06643          12 ELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL   68 (282)
T ss_pred             hcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEE
Confidence            5899999999999975 467889999865544556789999999998  99999874

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=96.40  E-value=0.0057  Score=61.13  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=43.7

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|+. .++..||||.++....   ...+.|.+|++++++  ||||++++
T Consensus         9 ~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (267)
T cd08228           9 KIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYL   68 (267)
T ss_pred             eeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeee
Confidence            689999999999996 4688999998854222   223578999999999  99999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=96.39  E-value=0.0039  Score=66.28  Aligned_cols=56  Identities=18%  Similarity=0.300  Sum_probs=44.9

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+++- .++..+|||.+....   ....+.+.+|+++|++  |+|||+++
T Consensus         6 ~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~   67 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLY   67 (376)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEE
Confidence            34799999999999985 457899999986421   2235678899999999  99999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=96.38  E-value=0.0046  Score=61.61  Aligned_cols=53  Identities=32%  Similarity=0.443  Sum_probs=44.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++...++..+|+|.+... .....+|.+|++++++  |+||++++
T Consensus        11 ~lg~G~~~~v~~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (256)
T cd05059          11 ELGSGQFGVVHLGKWRGKIDVAIKMIREG-AMSEDDFIEEAKVMMKLSHPNLVQLY   65 (256)
T ss_pred             hhccCCCceEEEeEecCCccEEEEEeccC-CCCHHHHHHHHHHHHhCCCCCEEEEE
Confidence            68999999999999887778999998543 2335679999999999  99999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=96.38  E-value=0.0061  Score=61.54  Aligned_cols=54  Identities=24%  Similarity=0.368  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||+|.. .+|..||||++....  ....+.+.+|++++++  |+||++++
T Consensus         6 ~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~   64 (283)
T cd07835           6 KIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLL   64 (283)
T ss_pred             EecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHh
Confidence            689999999999986 478999999986443  2234678999999999  99999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=96.36  E-value=0.0057  Score=61.58  Aligned_cols=55  Identities=24%  Similarity=0.343  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|.|++|.||+|... ++..+|+|++....  ....+++.+|++++++  |+||++++
T Consensus         5 ~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   64 (287)
T cd07840           5 AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLK   64 (287)
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeehe
Confidence            36899999999999975 57899999997653  2234678999999999  99999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=96.36  E-value=0.0057  Score=61.70  Aligned_cols=55  Identities=20%  Similarity=0.282  Sum_probs=45.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||+|.. .+|..||||++....  ....+++.+|++++++  |+||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   65 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLL   65 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCccee
Confidence            3689999999999996 468899999987543  2235789999999999  99999875

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=96.36  E-value=0.0034  Score=63.43  Aligned_cols=54  Identities=28%  Similarity=0.475  Sum_probs=45.8

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||++... ++..+|+|..+.......+.|.+|++++++  |+||++++
T Consensus        12 ~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (280)
T cd06611          12 ELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLY   68 (280)
T ss_pred             HhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEE
Confidence            5899999999999974 578999999875544456789999999999  99999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=96.35  E-value=0.0041  Score=62.78  Aligned_cols=54  Identities=26%  Similarity=0.476  Sum_probs=44.0

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|... ++..||+|.++... ....+++.+|++++++  ||||++++
T Consensus        11 ~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (277)
T cd06642          11 RIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYY   68 (277)
T ss_pred             HhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhh
Confidence            5899999999999864 57789999986433 2334679999999999  99999875

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=96.35  E-value=0.0034  Score=63.86  Aligned_cols=54  Identities=33%  Similarity=0.508  Sum_probs=44.2

Q ss_pred             eeccCCceeeeeeee------cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL------ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++..      .++..+|+|.+........+.|.+|++++++  |+||++++
T Consensus        12 ~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   73 (288)
T cd05093          12 ELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFY   73 (288)
T ss_pred             ccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            689999999999985      2345689999876555556789999999999  99999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=96.35  E-value=0.0049  Score=62.32  Aligned_cols=55  Identities=25%  Similarity=0.317  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++... ++..+|+|++.....  ...+.+.+|++++++  |+||++++
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   66 (286)
T cd07846           7 GLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLI   66 (286)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHH
Confidence            47899999999999985 478999998864322  234678999999999  99999764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=96.35  E-value=0.0032  Score=63.73  Aligned_cols=54  Identities=31%  Similarity=0.500  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++...      ++..+|+|.+........++|.+|++++++  |+||++++
T Consensus        12 ~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   73 (280)
T cd05092          12 ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFY   73 (280)
T ss_pred             ccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEE
Confidence            6899999999999742      356899999876655556789999999999  99999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=96.35  E-value=0.0063  Score=62.43  Aligned_cols=55  Identities=25%  Similarity=0.398  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec---CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA---DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|++|.||+|...   ++..+|+|.+....   ....+.+.+|++++++  ||||++++
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLV   68 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceE
Confidence            36899999999999974   47899999997632   3334678899999999  99999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=96.34  E-value=0.0041  Score=64.87  Aligned_cols=55  Identities=20%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..+|+|.++.... ...++|.+|+++|++  |||||+++
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   69 (331)
T cd06649          11 SELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFY   69 (331)
T ss_pred             EeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEE
Confidence            47899999999999975 578899999865422 224679999999999  99999875

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=96.34  E-value=0.0054  Score=61.94  Aligned_cols=54  Identities=24%  Similarity=0.455  Sum_probs=44.0

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.. .++..+|||...... ....++|.+|++++++  |+|||+++
T Consensus        11 ~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   68 (277)
T cd06641          11 KIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY   68 (277)
T ss_pred             eEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence            689999999999986 467899999886432 2334679999999999  99999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=96.32  E-value=0.0043  Score=64.93  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++... ++..+|+|.++.... ...++|.+|++++++  |+|||+++
T Consensus        11 ~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   69 (333)
T cd06650          11 SELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFY   69 (333)
T ss_pred             ccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCccccee
Confidence            37899999999999975 577899998865422 224679999999999  99999875

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=96.31  E-value=0.0058  Score=62.05  Aligned_cols=55  Identities=27%  Similarity=0.387  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||+|... ++..||||.+...... ....+.+|++++++  |+||++++
T Consensus        11 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   69 (291)
T cd07844          11 DKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLH   69 (291)
T ss_pred             EEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEE
Confidence            37899999999999975 6789999998654322 23567899999999  99999864

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=96.31  E-value=0.0061  Score=62.45  Aligned_cols=55  Identities=25%  Similarity=0.365  Sum_probs=46.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||+|.. .++..||+|.+........+.+.+|++++++  |+||++++
T Consensus        26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~   83 (296)
T cd06654          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL   83 (296)
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4789999999999985 5678999999976555556789999999988  99999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=96.31  E-value=0.0058  Score=63.83  Aligned_cols=55  Identities=22%  Similarity=0.317  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||+|.. .+|..||||+++... ......+..|++++++  |+|||+++
T Consensus        11 ~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   69 (336)
T cd07849          11 SYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGIL   69 (336)
T ss_pred             EEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchh
Confidence            4789999999999985 568899999996432 2345678899999999  99999874

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=96.30  E-value=0.0066  Score=62.22  Aligned_cols=55  Identities=25%  Similarity=0.351  Sum_probs=46.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|.|++|.||+|.- .+|..|++|.+.....+..+.+.+|++++++  |+||++++
T Consensus        25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   82 (296)
T cd06655          25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFL   82 (296)
T ss_pred             EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeee
Confidence            4789999999999984 5788999999976555556788999999998  99999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.30  E-value=0.0035  Score=45.20  Aligned_cols=36  Identities=42%  Similarity=0.718  Sum_probs=31.7

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT  483 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~  483 (581)
                      .++.|+|++|+++ .+|+.+.+|+.|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            5789999999998 68888999999999999999987

...

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=96.29  E-value=0.0061  Score=62.32  Aligned_cols=55  Identities=27%  Similarity=0.360  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|.|+||.||++.. .++..+|+|.+........+.+.+|+.++++  ||||++++
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~   82 (293)
T cd06647          25 EKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYL   82 (293)
T ss_pred             eEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehh
Confidence            4789999999999985 4678899999865544456789999999998  99999865

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=96.29  E-value=0.0045  Score=62.98  Aligned_cols=54  Identities=28%  Similarity=0.417  Sum_probs=42.2

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|...      ....+++|.+..... ...++|.+|++++++  |||||+++
T Consensus         7 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   69 (290)
T cd05045           7 TLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLY   69 (290)
T ss_pred             cccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEE
Confidence            6899999999999852      235789998864432 234679999999999  99999864

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=96.28  E-value=0.0051  Score=64.74  Aligned_cols=55  Identities=29%  Similarity=0.320  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- ..+..||||+++...  ....+.+.+|+.++++  |||||+++
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   82 (355)
T cd07874          23 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLL   82 (355)
T ss_pred             EEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhcee
Confidence            4799999999999985 357899999996432  2234678899999998  99999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=96.28  E-value=0.0053  Score=61.08  Aligned_cols=55  Identities=20%  Similarity=0.287  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|.|+||.||++... ++..+|+|.+....   ....+.+.+|++++++  ||||++++
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   66 (258)
T cd05578           6 RVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLW   66 (258)
T ss_pred             EEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHH
Confidence            37899999999999975 57899999986432   2346789999999999  99999864

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=96.27  E-value=0.0073  Score=60.95  Aligned_cols=55  Identities=27%  Similarity=0.417  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|.|++|.||+|+.. +|..||||.++..... ..+.+.+|++++++  |+||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   64 (284)
T cd07836           6 EKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLH   64 (284)
T ss_pred             eeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeee
Confidence            47899999999999974 6889999999755433 34678899999999  99999875

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=96.27  E-value=0.0051  Score=61.56  Aligned_cols=55  Identities=27%  Similarity=0.558  Sum_probs=43.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--C---CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--S---QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~---~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++.. .+|..||||.+....  .   +..+.+.+|++++++  |+||++++
T Consensus         8 ~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   70 (265)
T cd06652           8 KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYY   70 (265)
T ss_pred             eEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEE
Confidence            3789999999999986 457899999885321  1   123578899999999  99999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=96.26  E-value=0.0067  Score=61.82  Aligned_cols=54  Identities=24%  Similarity=0.276  Sum_probs=43.8

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCC-----ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-----GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-----~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|++|.||+|... +|..||||++......     ..+.+..|++++++  |+||++++
T Consensus         7 ~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   68 (298)
T cd07841           7 KLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLL   68 (298)
T ss_pred             eeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhh
Confidence            6899999999999964 6889999999754322     23567889999998  99999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=96.26  E-value=0.0052  Score=61.41  Aligned_cols=54  Identities=26%  Similarity=0.417  Sum_probs=44.1

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|++|.||++.. .++..+|||.+.....   ...++|.+|++++++  |+||++++
T Consensus         9 ~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   68 (267)
T cd08229           9 KIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYY   68 (267)
T ss_pred             hhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhh
Confidence            689999999999995 5788999998864322   234689999999999  99999865

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=96.25  E-value=0.004  Score=63.06  Aligned_cols=54  Identities=24%  Similarity=0.383  Sum_probs=44.3

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++... +|..+|+|.++... ....++|.+|++++.+  |+||++++
T Consensus         8 ~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   65 (286)
T cd06622           8 ELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFY   65 (286)
T ss_pred             hhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhh
Confidence            6899999999999975 67899999886432 2224689999999999  99999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=96.25  E-value=0.0064  Score=61.66  Aligned_cols=54  Identities=24%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++... +|..+|+|.+.... ....++|.+|++++++  ||||++++
T Consensus        12 ~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   69 (284)
T cd06620          12 DLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFY   69 (284)
T ss_pred             HcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEe
Confidence            6899999999999864 67899999886443 2335789999999998  99999875

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=96.25  E-value=0.0056  Score=61.40  Aligned_cols=55  Identities=29%  Similarity=0.454  Sum_probs=43.0

Q ss_pred             EeeccCCceeeeeeeec----CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA----DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~----~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||+|...    .+..+|+|.++.... ...+.|.+|++++.+  ||||++++
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   71 (267)
T cd05066          10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLE   71 (267)
T ss_pred             eeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            37899999999999863    234799999865432 234689999999998  99999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=96.25  E-value=0.007  Score=61.06  Aligned_cols=55  Identities=25%  Similarity=0.309  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||++... +|..||+|++....  ....+.|.+|++++++  |+||++++
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   66 (286)
T cd07847           7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLI   66 (286)
T ss_pred             eeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeee
Confidence            36899999999999975 58899999986432  2234678999999999  99999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=96.25  E-value=0.0065  Score=61.29  Aligned_cols=55  Identities=22%  Similarity=0.330  Sum_probs=42.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||+|+++.... ....++..|+..+.+   |+|||+++
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~   66 (283)
T cd06617           7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFY   66 (283)
T ss_pred             EEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeee
Confidence            36899999999999974 688999999875432 334567777776544   99999865

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=96.25  E-value=0.005  Score=62.32  Aligned_cols=55  Identities=27%  Similarity=0.456  Sum_probs=43.5

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||.+..     .++..||+|.++.... +..+.|.+|+++|++  ||||++++
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   72 (283)
T cd05080          10 RVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYK   72 (283)
T ss_pred             eecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4789999999977543     4577899999865432 345789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=96.24  E-value=0.0053  Score=62.27  Aligned_cols=55  Identities=29%  Similarity=0.419  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||.+++     .++..||+|.++... ....+.|.+|++++++  |+||++++
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   72 (284)
T cd05079          10 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYK   72 (284)
T ss_pred             eecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeee
Confidence            4689999999999875     346789999987543 2335689999999999  99999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=96.24  E-value=0.0076  Score=60.07  Aligned_cols=54  Identities=26%  Similarity=0.407  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||+|... +|..+|+|.++...   ....+.+.+|++++++  |+||++++
T Consensus         9 ~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~   68 (267)
T cd08224           9 KIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYL   68 (267)
T ss_pred             eeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeee
Confidence            6899999999999986 78899999886321   2235689999999999  99998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PHA03212 serine/threonine kinase US3; Provisional

Probab=96.24  E-value=0.0052  Score=66.00  Aligned_cols=50  Identities=16%  Similarity=0.088  Sum_probs=41.6

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +..||+|+||.||++.- ..+..||+|...      .+.+.+|+++|++  |||||+++
T Consensus        97 ~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~  149 (391)
T PHA03212         97 LETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLK  149 (391)
T ss_pred             EEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEe
Confidence            35799999999999985 467899999753      2357899999999  99999875

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=96.24  E-value=0.0051  Score=64.25  Aligned_cols=55  Identities=22%  Similarity=0.364  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..||||.++..   .....+.|.+|+.++.+  |+||++++
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   67 (331)
T cd05597           7 KVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLH   67 (331)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceE
Confidence            47899999999999964 5789999998642   22234668899999988  99999875

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=96.22  E-value=0.0057  Score=64.27  Aligned_cols=55  Identities=25%  Similarity=0.332  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||+|+++...  ....+.+.+|++++.+  |+|||+++
T Consensus        23 ~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~   82 (345)
T cd07877          23 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLL   82 (345)
T ss_pred             EEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCccccee
Confidence            4799999999999985 578899999996432  2234678899999998  99999864

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=96.22  E-value=0.0077  Score=63.15  Aligned_cols=55  Identities=29%  Similarity=0.361  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. .+|..||||+++..  .....+.+.+|++++++  |+||++++
T Consensus        21 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~   80 (342)
T cd07879          21 KQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLL   80 (342)
T ss_pred             EEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchh
Confidence            4799999999999995 56889999998642  22234678899999998  99999875

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=96.22  E-value=0.0071  Score=60.16  Aligned_cols=54  Identities=26%  Similarity=0.450  Sum_probs=45.3

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|... ++..+++|.++.....  ..+++.+|++++++  |+||++++
T Consensus         7 ~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~   65 (264)
T cd06626           7 KIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYY   65 (264)
T ss_pred             EeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhhee
Confidence            6899999999999864 6789999998754332  46789999999999  99999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=96.21  E-value=0.0061  Score=60.99  Aligned_cols=53  Identities=28%  Similarity=0.417  Sum_probs=44.7

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++... .+..||+|.++.. ....++|.+|++++.+  |+||++++
T Consensus        13 ~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (263)
T cd05052          13 KLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLL   68 (263)
T ss_pred             ecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheE
Confidence            6899999999999975 4778999998643 3346789999999999  99999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=96.20  E-value=0.0075  Score=59.90  Aligned_cols=55  Identities=22%  Similarity=0.416  Sum_probs=46.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||++... ++..+++|.+........+++.+|++++++  ||||++++
T Consensus         9 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   66 (262)
T cd06613           9 QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYF   66 (262)
T ss_pred             EEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceE
Confidence            36899999999999974 567899999976555567889999999999  99999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=96.20  E-value=0.0074  Score=63.80  Aligned_cols=55  Identities=29%  Similarity=0.297  Sum_probs=44.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- ..+..||||++....  ....+++.+|+.++++  ||||++++
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~   89 (364)
T cd07875          30 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLL   89 (364)
T ss_pred             EEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccc
Confidence            4799999999999985 457889999996432  2335678899999998  99999875

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=96.19  E-value=0.0071  Score=59.49  Aligned_cols=55  Identities=25%  Similarity=0.496  Sum_probs=45.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||+|... ++..|++|+++....  ...+++.+|++++++  |+||++++
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (260)
T cd06606           6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY   65 (260)
T ss_pred             eEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEE
Confidence            36899999999999976 688999999865432  346789999999999  99999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=96.19  E-value=0.0082  Score=61.03  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.+|+|+||.||++... ++..||||.++...  ....+++.+|++++++   |+||++++
T Consensus         7 ~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~   67 (295)
T cd07837           7 EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLL   67 (295)
T ss_pred             eEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCcccee
Confidence            37899999999999974 68899999886432  2234678999999988   69999875

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=96.18  E-value=0.0087  Score=61.03  Aligned_cols=54  Identities=22%  Similarity=0.348  Sum_probs=44.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|... +|..||||+++...  ......+.+|++++++  ||||++++
T Consensus        14 ~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~   72 (302)
T cd07864          14 QIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLK   72 (302)
T ss_pred             eecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeee
Confidence            7899999999999985 57899999996442  2234578899999999  99999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=96.18  E-value=0.0062  Score=62.62  Aligned_cols=54  Identities=28%  Similarity=0.427  Sum_probs=44.6

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC-CC-hHHHHHHHHHHhc--CCC-ccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QG-PKQFRTEVELIDY--YKN-LSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~-~~ef~~Ei~~l~~--H~N-lV~l~  580 (581)
                      .+|+|.+|.||+|+- .+|..||+|+++.... .| ...-.+|+.+|.+  |+| ||.|+
T Consensus        18 klGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~   77 (323)
T KOG0594|consen   18 KLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLH   77 (323)
T ss_pred             HhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEE
Confidence            589999999999995 5788999999975544 23 4556899999999  999 99874

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=96.17  E-value=0.0043  Score=62.98  Aligned_cols=54  Identities=26%  Similarity=0.407  Sum_probs=43.4

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++...      ++..+|+|.+.... .+..++|.+|++++++  |||||+++
T Consensus        12 ~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~   74 (288)
T cd05050          12 DIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLL   74 (288)
T ss_pred             cccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEE
Confidence            6899999999999863      35689999986432 2335679999999999  99999864

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=96.17  E-value=0.0057  Score=61.37  Aligned_cols=54  Identities=26%  Similarity=0.457  Sum_probs=42.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC---C-------ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS---Q-------GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~---~-------~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||+|.. .+|..+|||.++....   +       ..+.+.+|++++++  |+||++++
T Consensus         8 ~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   74 (272)
T cd06629           8 LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYL   74 (272)
T ss_pred             eecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEE
Confidence            689999999999985 4688999998753211   1       12468899999999  99999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=96.17  E-value=0.0083  Score=60.12  Aligned_cols=53  Identities=25%  Similarity=0.608  Sum_probs=43.4

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|+|+||.||+|... ++..||+|.+... .....++..|++++.+   |+||++++
T Consensus        13 ~lg~g~~g~vy~~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~~~~h~~i~~~~   69 (272)
T cd06637          13 LVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINMLKKYSHHRNIATYY   69 (272)
T ss_pred             heeecCCeEEEEEEEcCCCcEEEEEEEEcC-CccHHHHHHHHHHHHHhcCCCCeeeEe
Confidence            5899999999999974 5788999998643 3445788999998887   99999864

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=96.17  E-value=0.0069  Score=64.57  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=43.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC---CC-----------ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQ-----------GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~-----------~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|.||.|-+|+- .++..||||.+....   .+           ..+...+||.+|++  |+|||+|+
T Consensus       104 eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen  104 EIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             hhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            689999999999884 578899999985321   11           12578899999999  99999986

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=96.16  E-value=0.005  Score=63.01  Aligned_cols=54  Identities=24%  Similarity=0.331  Sum_probs=45.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.. .++..||||++........+.+.+|+.++.+  |+||++++
T Consensus        29 ~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~   85 (292)
T cd06658          29 KIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMY   85 (292)
T ss_pred             cccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            689999999999986 4578999999866554556779999999998  99999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=96.15  E-value=0.0058  Score=61.01  Aligned_cols=54  Identities=22%  Similarity=0.361  Sum_probs=43.9

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC----C--ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS----Q--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~----~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++.. .++..+|+|.+.....    +  ..+++..|++++++  |+|||+++
T Consensus         7 ~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   69 (268)
T cd06630           7 QLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRML   69 (268)
T ss_pred             eecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhh
Confidence            689999999999985 6688999999864321    1  24678999999999  99999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=96.14  E-value=0.0087  Score=60.58  Aligned_cols=55  Identities=27%  Similarity=0.359  Sum_probs=41.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc-----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      +.||+|+||.||++... +|..||+|.++....  .....+.+|++++++     ||||++++
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~   68 (288)
T cd07863           6 AEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLM   68 (288)
T ss_pred             eEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeee
Confidence            36899999999999864 678999999865322  223456677766653     99999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.14  E-value=0.0027  Score=66.28  Aligned_cols=60  Identities=38%  Similarity=0.607  Sum_probs=49.6

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      .+++..|||..|.+. .+|.+++.|.+|+.||+|+|.++ .+|.+++++ .|+.|-+.+|.+.
T Consensus       251 L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  251 LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             cccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence            467888888888887 67888888888888888888888 678888888 8888888888764

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.14  E-value=0.0082  Score=70.46  Aligned_cols=55  Identities=33%  Similarity=0.552  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|... .|..||||+++.....   ..++|.+|++++++  |||||+++
T Consensus         8 ~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~   68 (932)
T PRK13184          8 RLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVY   68 (932)
T ss_pred             EEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEE
Confidence            47899999999999864 5789999999653222   24579999999999  99999875

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=96.14  E-value=0.0077  Score=63.21  Aligned_cols=55  Identities=27%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||++....  ....+++.+|+++|++  |+|||+++
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   80 (343)
T cd07880          21 KQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLL   80 (343)
T ss_pred             EEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccee
Confidence            4789999999999985 578899999985422  2234578899999999  99999874

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=96.12  E-value=0.0057  Score=63.63  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..+|||.++...   ....+.+.+|++++++  |+||++++
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~   67 (330)
T cd05601           7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQ   67 (330)
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCccee
Confidence            4789999999999986 467899999997432   2345678899999988  99999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=96.11  E-value=0.007  Score=64.40  Aligned_cols=55  Identities=20%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. ++..+|+|.++..   .....+.|.+|++++++  |||||+++
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~  109 (370)
T cd05596          49 KVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLH  109 (370)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEE
Confidence            47999999999999864 5789999998642   22334568899999998  99999875

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.11  E-value=0.0069  Score=64.13  Aligned_cols=55  Identities=22%  Similarity=0.335  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC-hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG-PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~-~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||.|..+.||+|+. +.++.||||+++....+. .++...|++.|+.  |||||+++
T Consensus        32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~   90 (516)
T KOG0582|consen   32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYH   90 (516)
T ss_pred             EEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEE
Confidence            3799999999999984 677999999997554443 5889999999998  99999864

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=96.09  E-value=0.0068  Score=60.73  Aligned_cols=54  Identities=28%  Similarity=0.522  Sum_probs=42.9

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC-----CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-----QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-----~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++.. ..+..+|+|++.....     +..+.+.+|++++++  ||||++++
T Consensus         9 ~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   70 (266)
T cd06651           9 LLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYY   70 (266)
T ss_pred             eecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEE
Confidence            689999999999986 4578999998853321     223568899999999  99999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=96.08  E-value=0.0053  Score=64.39  Aligned_cols=54  Identities=28%  Similarity=0.361  Sum_probs=42.0

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||+|...      .++.||+|+++....+ ..+.+..|++++.+   |+|||+++
T Consensus        14 ~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~   77 (337)
T cd05054          14 PLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLL   77 (337)
T ss_pred             ccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhhee
Confidence            7899999999999742      2468999999754322 24567889999888   99999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=96.08  E-value=0.0082  Score=59.39  Aligned_cols=54  Identities=22%  Similarity=0.327  Sum_probs=44.7

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++... ++..+++|.+...  .....+++.+|++++++  ||||++++
T Consensus         7 ~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   65 (256)
T cd08529           7 KIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYY   65 (256)
T ss_pred             EecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehhe
Confidence            6899999999999974 6789999998643  23345789999999999  99999865

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=96.08  E-value=0.011  Score=59.77  Aligned_cols=55  Identities=27%  Similarity=0.390  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|++|.||+|... ++..||||.++...  ....+++.+|++++.+  |+||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   65 (285)
T cd07861           6 EKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQ   65 (285)
T ss_pred             eEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeE
Confidence            36899999999999974 68899999986432  2234678999999999  99999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=96.07  E-value=0.01  Score=59.20  Aligned_cols=54  Identities=26%  Similarity=0.483  Sum_probs=42.8

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCC---------hHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG---------PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~---------~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||+|.. .++..+|+|.+.......         .+.+.+|++++++  ||||++++
T Consensus         7 ~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   72 (267)
T cd06628           7 LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYL   72 (267)
T ss_pred             eeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEE
Confidence            689999999999986 457899999886432211         2568899999999  99999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=96.07  E-value=0.01  Score=60.99  Aligned_cols=55  Identities=31%  Similarity=0.349  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||+|... +|..||+|.+......   ..+++.+|++++++  ||||++++
T Consensus        21 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~   81 (307)
T cd06607          21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYK   81 (307)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            37899999999999974 6789999998643322   23578999999999  99999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=96.06  E-value=0.0084  Score=60.99  Aligned_cols=55  Identities=24%  Similarity=0.312  Sum_probs=46.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|++|.||++.. .++..+++|+++.......+.+.+|+.++++  |+||++++
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~   82 (285)
T cd06648          25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMY   82 (285)
T ss_pred             eEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEE
Confidence            3799999999999985 4678999999875544556779999999998  99999875

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=96.05  E-value=0.0076  Score=59.63  Aligned_cols=52  Identities=25%  Similarity=0.505  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++...+ +..+++|.++....  .++|.+|++++++  |+||++++
T Consensus        10 ~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~   64 (256)
T cd06612          10 KLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYY   64 (256)
T ss_pred             hhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeee
Confidence            68999999999999865 78999999865422  6789999999999  99999875

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.05  E-value=0.0045  Score=64.56  Aligned_cols=78  Identities=27%  Similarity=0.496  Sum_probs=62.7

Q ss_pred             ccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC-ccCCC
Q 008008          436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG-NKLSG  508 (581)
Q Consensus       436 v~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~-N~l~G  508 (581)
                      |.|+..+..      |+..+.|+|..|+++-.-|..|+.+++|+.||||+|+++-.=|..+..+.+|..|-+.+ |+++ 
T Consensus        51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-  129 (498)
T ss_pred             EEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-
Confidence            778876642      66789999999999844445799999999999999999977788888888877776665 7887 


Q ss_pred             CCchHH
Q 008008          509 SVPTSL  514 (581)
Q Consensus       509 ~iP~~l  514 (581)
                      .+|...
T Consensus       130 ~l~k~~  135 (498)
T KOG4237|consen  130 DLPKGA  135 (498)
T ss_pred             hhhhhH
Confidence            677664

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=96.04  E-value=0.0092  Score=59.28  Aligned_cols=55  Identities=24%  Similarity=0.351  Sum_probs=46.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||++... ++..++||++..... ...++|.+|++.+.+  |+||++++
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (264)
T cd06623           7 KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCY   65 (264)
T ss_pred             eeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEE
Confidence            37899999999999986 488999999875543 346789999999998  99999864

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=96.04  E-value=0.0087  Score=60.18  Aligned_cols=54  Identities=24%  Similarity=0.464  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||+|... ++..+|+|.+.... .....++.+|++++++  |+||++++
T Consensus         8 ~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   65 (274)
T cd06609           8 CIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYY   65 (274)
T ss_pred             hhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeee
Confidence            6899999999999974 67899999986443 3345789999999999  99999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=96.03  E-value=0.0096  Score=62.22  Aligned_cols=55  Identities=22%  Similarity=0.356  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||++.- .++..||||+++..  .....+++.+|++++++  |+||++++
T Consensus        11 ~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~   70 (337)
T cd07858          11 KPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIK   70 (337)
T ss_pred             EEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchH
Confidence            3789999999999985 46789999998643  23345678899999998  99999764

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=96.03  E-value=0.0095  Score=60.64  Aligned_cols=55  Identities=20%  Similarity=0.323  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|++|.||+|... +|..||+|++....  ....+.+.+|++++++  |+||++++
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   67 (294)
T PLN00009          8 EKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQ   67 (294)
T ss_pred             EEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEE
Confidence            37899999999999974 68899999986432  2334678999999999  99999875

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=96.03  E-value=0.0063  Score=62.00  Aligned_cols=54  Identities=31%  Similarity=0.473  Sum_probs=44.1

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+++..      ++..+++|+++.......+.|.+|++++++  |+||++++
T Consensus        12 ~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   73 (291)
T cd05094          12 ELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFY   73 (291)
T ss_pred             eecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEE
Confidence            7899999999999742      345689999876554456789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=96.03  E-value=0.011  Score=60.10  Aligned_cols=55  Identities=29%  Similarity=0.396  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.. .+|..+|+|++..... +....+.+|++++++  |+||++++
T Consensus        11 ~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~   69 (291)
T cd07870          11 EKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLH   69 (291)
T ss_pred             EEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEE
Confidence            4789999999999986 4678999999865433 334578899999998  99999764

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=96.02  E-value=0.0092  Score=59.07  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||++... +|..+|+|.+....  ....+.+.+|++++++  |+||++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~   65 (257)
T cd08225           6 KKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFF   65 (257)
T ss_pred             EEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhh
Confidence            36899999999999975 57889999986432  2345678899999999  99999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=96.02  E-value=0.0086  Score=62.38  Aligned_cols=54  Identities=24%  Similarity=0.308  Sum_probs=42.3

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCC--------------hHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQG--------------PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~--------------~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||.|+||.||++... ++..||||.++......              ...+.+|++++++  |+|||+++
T Consensus        16 ~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (335)
T PTZ00024         16 HLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLV   86 (335)
T ss_pred             cccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeee
Confidence            6899999999999854 68899999886432111              1257899999999  99999865

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=96.02  E-value=0.0073  Score=62.03  Aligned_cols=55  Identities=33%  Similarity=0.593  Sum_probs=42.6

Q ss_pred             EeeccCCceeeeeeee-cCCc----eEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGS----EVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~----~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.. .+|.    .||+|.+...... ...+|.+|++++++  |||||+++
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~   75 (303)
T cd05110          13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLL   75 (303)
T ss_pred             cccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEE
Confidence            3799999999999986 3443    5789988654322 23578999999999  99999875

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=96.02  E-value=0.0077  Score=62.06  Aligned_cols=55  Identities=20%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++... ++..+|+|.++.... ...+++.+|++++.+  |||||+++
T Consensus         7 ~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   65 (308)
T cd06615           7 GELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFY   65 (308)
T ss_pred             eeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            46899999999999864 577899998864322 223568899999999  99999875

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=96.01  E-value=0.0099  Score=60.40  Aligned_cols=56  Identities=27%  Similarity=0.322  Sum_probs=45.7

Q ss_pred             EEeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ...+|.|++|.||++... ++..+|+|.+..... ....++.+|++++++  |||||+++
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   65 (287)
T cd06621           6 LSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYY   65 (287)
T ss_pred             EEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeee
Confidence            347899999999999984 578899999864432 345779999999999  99999874

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=96.01  E-value=0.0067  Score=61.27  Aligned_cols=54  Identities=33%  Similarity=0.550  Sum_probs=43.0

Q ss_pred             eeccCCceeeeeeeec-CCc----eEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGS----EVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~----~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|... +|.    .+|+|.+..... +...++.+|++++++  |+||++++
T Consensus        14 ~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   75 (279)
T cd05057          14 VLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLL   75 (279)
T ss_pred             eecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            6899999999999974 333    589998865433 234689999999999  99999875

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=96.00  E-value=0.0055  Score=67.89  Aligned_cols=40  Identities=23%  Similarity=0.408  Sum_probs=29.0

Q ss_pred             EeeccCCceeeeeeee-----------------cCCceEEEEeeccCCCCChHHHHH
Q 008008          526 RILGKGGFGTVYHGYL-----------------ADGSEVAIKMLSASSSQGPKQFRT  565 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----------------~~g~~VAVK~l~~~~~~~~~ef~~  565 (581)
                      +.||+|+||.||+|.+                 .+++.||||+++.......++|.+
T Consensus       151 ~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~  207 (507)
T PLN03224        151 DKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLK  207 (507)
T ss_pred             eEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHh
Confidence            4799999999999974                 235689999997654433445544

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=96.00  E-value=0.0077  Score=60.27  Aligned_cols=54  Identities=30%  Similarity=0.523  Sum_probs=43.0

Q ss_pred             eeccCCceeeeeeeec-CC---ceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DG---SEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g---~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|... ++   ..+|+|.++... ....++|..|++++++  |+||+++.
T Consensus        12 ~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   72 (268)
T cd05063          12 VIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLE   72 (268)
T ss_pred             EecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEE
Confidence            7899999999999974 23   379999986543 2235679999999998  99998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=95.99  E-value=0.0086  Score=60.68  Aligned_cols=54  Identities=20%  Similarity=0.404  Sum_probs=43.8

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++.. .++..+|+|.+..... ....++..|++++.+   |+|||+++
T Consensus        11 ~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~   69 (288)
T cd06616          11 EIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFY   69 (288)
T ss_pred             HhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeee
Confidence            589999999999886 4578999999865432 235678999999888   89999875

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=95.99  E-value=0.008  Score=60.88  Aligned_cols=54  Identities=28%  Similarity=0.384  Sum_probs=41.6

Q ss_pred             eeccCCceeeeeeeec-CCc----eEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGS----EVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~----~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.+. ++.    .+++|.+..... +..+++..|+..+++  |+|||+++
T Consensus        14 ~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~   75 (279)
T cd05111          14 LLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLL   75 (279)
T ss_pred             ccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEE
Confidence            7899999999999973 444    478888754332 234678889989988  99999875

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=95.98  E-value=0.0076  Score=60.84  Aligned_cols=54  Identities=24%  Similarity=0.456  Sum_probs=44.4

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|... ++..||||.+.... ....++|.+|++++++  |+||++++
T Consensus        11 ~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (277)
T cd06640          11 RIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY   68 (277)
T ss_pred             hcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            6899999999999874 57899999986432 2345789999999998  99999874

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=95.98  E-value=0.011  Score=57.83  Aligned_cols=54  Identities=33%  Similarity=0.598  Sum_probs=46.5

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++... ++..+++|++........+++.+|++++++  |+|+++++
T Consensus         7 ~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   63 (253)
T cd05122           7 KIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYY   63 (253)
T ss_pred             eeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            6899999999999985 678999999976554566889999999999  99998764

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=95.98  E-value=0.007  Score=61.91  Aligned_cols=54  Identities=30%  Similarity=0.498  Sum_probs=42.4

Q ss_pred             eeccCCceeeeeeeecC-Cc--eEEEEeeccC-CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-GS--EVAIKMLSAS-SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~--~VAVK~l~~~-~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||+|...+ +.  .+++|.++.. .....+.|.+|++++++   |||||+++
T Consensus         9 ~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~   69 (297)
T cd05089           9 VIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLL   69 (297)
T ss_pred             eecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheE
Confidence            78999999999999753 33  5789888643 22345689999999987   99999874

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=95.97  E-value=0.008  Score=60.70  Aligned_cols=54  Identities=37%  Similarity=0.568  Sum_probs=42.7

Q ss_pred             eeccCCceeeeeeeecCC------ceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADG------SEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g------~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.....      ..||+|.++.... ...++|.+|++++++  ||||++++
T Consensus        12 ~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   74 (283)
T cd05048          12 ELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLL   74 (283)
T ss_pred             cccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEE
Confidence            689999999999986432      4799999864432 234679999999998  99999865

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=95.96  E-value=0.0089  Score=63.67  Aligned_cols=55  Identities=20%  Similarity=0.347  Sum_probs=43.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..+|+|.++..   .....+.+.+|+++++.  |||||+++
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~  109 (370)
T cd05621          49 KVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLF  109 (370)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEE
Confidence            47999999999999975 5778999998532   22234568899999998  99999875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=95.96  E-value=0.0073  Score=60.98  Aligned_cols=55  Identities=35%  Similarity=0.526  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeecC------CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD------GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||+|...+      +..||+|....... +...+|..|+.++++  |+||++++
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   75 (277)
T cd05036          12 RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLI   75 (277)
T ss_pred             eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            378999999999999854      46789998864432 334679999999999  99999875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=95.96  E-value=0.0095  Score=60.14  Aligned_cols=55  Identities=35%  Similarity=0.552  Sum_probs=42.9

Q ss_pred             EeeccCCceeeeeeee-cCCc----eEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGS----EVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~----~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. ++|.    .||+|.++..... ..+++.+|+.++.+  |+||+.++
T Consensus        13 ~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   75 (279)
T cd05109          13 KVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLL   75 (279)
T ss_pred             eecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence            4799999999999985 4454    4899998654322 35688999999998  99998764

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=95.96  E-value=0.0059  Score=62.32  Aligned_cols=54  Identities=30%  Similarity=0.417  Sum_probs=41.8

Q ss_pred             eeccCCceeeeeeeecC-------------C--ceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-------------G--SEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-------------g--~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++...+             +  ..||+|.++.... .....|.+|++++++  |+||++++
T Consensus        12 ~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097          12 KLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             ccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            68999999999887532             1  2589999875422 234579999999999  99999874

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=95.95  E-value=0.011  Score=62.33  Aligned_cols=55  Identities=31%  Similarity=0.392  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++.- .+|..||||.+...  .....+++.+|++++++  |+||++++
T Consensus        22 ~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   81 (353)
T cd07850          22 KPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLL   81 (353)
T ss_pred             EEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCccee
Confidence            4789999999999985 46889999998532  22334678899999999  99999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=95.94  E-value=0.0063  Score=64.40  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..+|||.++...   ....+.+.+|++++.+  |+|||+++
T Consensus         7 ~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~   67 (363)
T cd05628           7 KVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMF   67 (363)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            4799999999999985 457899999986432   2234678899999998  99999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=95.94  E-value=0.0073  Score=60.90  Aligned_cols=54  Identities=26%  Similarity=0.447  Sum_probs=42.5

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|...      .+..||||+++... .....+|.+|++++++  |+|||+++
T Consensus        13 ~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~   75 (277)
T cd05062          13 ELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL   75 (277)
T ss_pred             eeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            7899999999998753      24579999986432 2234679999999998  99999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=95.94  E-value=0.0078  Score=66.81  Aligned_cols=54  Identities=24%  Similarity=0.374  Sum_probs=43.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCcccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l  579 (581)
                      ..||+|+||.||++.. .+|..||||.++...  .+....+.+|++.|.+  |+|||++
T Consensus        38 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~   96 (496)
T PTZ00283         38 RVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKC   96 (496)
T ss_pred             EEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEe
Confidence            3799999999999985 578999999986432  2334678899999988  9999875

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=95.93  E-value=0.01  Score=59.41  Aligned_cols=54  Identities=30%  Similarity=0.574  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccC-----CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSAS-----SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~-----~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++.. .++..+|+|.+...     ..+..+.|.+|++++++  |+||++++
T Consensus         9 ~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   70 (264)
T cd06653           9 LLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYY   70 (264)
T ss_pred             eEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEE
Confidence            789999999999986 45889999987432     12234678999999999  99999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.93  E-value=0.0037  Score=72.23  Aligned_cols=66  Identities=29%  Similarity=0.359  Sum_probs=54.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      ..+..|+|++|.|++ +|..   ...|+.|+|++|+++ .+|..+++++.|+.|+|++|+|+|.+|..+..
T Consensus       402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            457788888888874 6653   345778899999998 79999999999999999999999999887744

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.92  E-value=0.0051  Score=68.22  Aligned_cols=55  Identities=31%  Similarity=0.421  Sum_probs=46.9

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      ++|+|-+|+||.|+-.+ ...+|||.+.....+..+-..+||.+.++  |+|||+.++
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLG  639 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLG  639 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhh
Confidence            89999999999999544 45899999976666667788999999999  999998764

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=95.92  E-value=0.011  Score=58.74  Aligned_cols=55  Identities=24%  Similarity=0.398  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|.|++|.||+|... ++..+|+|++.... ....+++.+|+++|++  |+||++++
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (267)
T cd06610           7 EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYY   65 (267)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            36899999999999964 67789999996433 2356789999999998  99999864

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=95.92  E-value=0.0094  Score=59.12  Aligned_cols=55  Identities=24%  Similarity=0.360  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.+|++.. .+|..+|+|+++...  ....+++.+|++++++  |+||++++
T Consensus         6 ~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (256)
T cd08218           6 KKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQ   65 (256)
T ss_pred             EEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeE
Confidence            4789999999999886 467899999986432  2335689999999999  99999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=95.92  E-value=0.011  Score=59.79  Aligned_cols=55  Identities=25%  Similarity=0.363  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++... +|..+|+|+++...  ....+.+.+|++++++  |+||++++
T Consensus         6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   65 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLY   65 (284)
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHH
Confidence            36899999999999974 68899999986432  2234678899999998  99999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=95.91  E-value=0.0095  Score=60.63  Aligned_cols=55  Identities=27%  Similarity=0.392  Sum_probs=43.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... +++.+|||.+.....   +..+.+..|++++.+  |+|++.++
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~   66 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLA   66 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeee
Confidence            47899999999998864 678999999864322   223567889999998  99999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.91  E-value=0.006  Score=66.22  Aligned_cols=54  Identities=22%  Similarity=0.310  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|..|.||-+. ...+..||||++....++..+-..+|+.+|+.  |+|||.++
T Consensus       280 kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl  336 (550)
T KOG0578|consen  280 KIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFL  336 (550)
T ss_pred             hhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHH
Confidence            78999999999988 45678999999976544444456899999998  99999864

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=95.90  E-value=0.01  Score=61.33  Aligned_cols=54  Identities=30%  Similarity=0.322  Sum_probs=44.0

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++.. .++..+|+|.+......   ..+++..|++++++  |+|+|+++
T Consensus        32 ~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   91 (317)
T cd06635          32 EIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYK   91 (317)
T ss_pred             eeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            689999999999996 46789999998644322   23578899999999  99999875

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.89  E-value=0.0074  Score=63.75  Aligned_cols=55  Identities=24%  Similarity=0.501  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC-CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+||+|.||.||||.- ..++.||+|.+... ......+.+.|+.+|++  |+||.+.+
T Consensus        19 ~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yy   77 (467)
T KOG0201|consen   19 ELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYY   77 (467)
T ss_pred             hhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhh
Confidence            3799999999999996 35678999999743 34456788999999999  99997654

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=95.89  E-value=0.012  Score=60.40  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=43.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-C-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-Q-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|... +|..||+|+++.... . ....+.+|++++.+  |+||++++
T Consensus        13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   72 (309)
T cd07845          13 NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELK   72 (309)
T ss_pred             eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceE
Confidence            47899999999999974 588999999864322 2 23457789999999  99999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=95.89  E-value=0.01  Score=60.29  Aligned_cols=55  Identities=31%  Similarity=0.509  Sum_probs=42.4

Q ss_pred             EeeccCCceeeeeeeecC------CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD------GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||+|...+      +..||+|.++.... ....+|.+|+.++++  |+||++++
T Consensus        12 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   75 (288)
T cd05061          12 RELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLL   75 (288)
T ss_pred             eeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            479999999999997532      45799998864422 223568899999998  99999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.88  E-value=0.0025  Score=57.36  Aligned_cols=66  Identities=29%  Similarity=0.513  Sum_probs=46.9

Q ss_pred             CceeEeecCCCCCceecchhhhcc-cCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNL-KSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .+++.++|++|+|. .+|+.|... +.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|.-+
T Consensus        53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi  119 (177)
T KOG4579|consen   53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVI  119 (177)
T ss_pred             ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHH
Confidence            45777788888876 566666544 46777888888877 77887888888888888888776 334433

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=95.87  E-value=0.0099  Score=59.74  Aligned_cols=55  Identities=29%  Similarity=0.497  Sum_probs=43.7

Q ss_pred             EeeccCCceeeeeeeecC------CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD------GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||+|...+      +..||+|.+..... ....+|.+|+++|++  |+||++++
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   75 (277)
T cd05032          12 RELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLL   75 (277)
T ss_pred             eEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEE
Confidence            378999999999998743      35799999865432 234679999999998  99999875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=95.86  E-value=0.015  Score=59.40  Aligned_cols=55  Identities=27%  Similarity=0.400  Sum_probs=43.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||.|++|.||++... ++..+|||++....  ......+.+|++++++  |+||++++
T Consensus        14 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   73 (311)
T cd07866          14 GKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLI   73 (311)
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchh
Confidence            37899999999999964 67899999985432  2224567899999998  99999874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=95.86  E-value=0.011  Score=58.61  Aligned_cols=55  Identities=27%  Similarity=0.414  Sum_probs=44.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|.|+||.||++.. .++..+|+|.++...  ....+++..|++++++  |+||++++
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (265)
T cd08217           6 ETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYY   65 (265)
T ss_pred             eeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceee
Confidence            3689999999999985 467899999986432  2234678899999999  99999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=95.86  E-value=0.014  Score=60.20  Aligned_cols=55  Identities=31%  Similarity=0.436  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||++... ++..+|+|.+.....   ...+.+.+|+++|.+  |+||++++
T Consensus         7 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   67 (316)
T cd05574           7 KLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLY   67 (316)
T ss_pred             eeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhhe
Confidence            47899999999999975 478999999865432   245679999999999  99999875

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=95.84  E-value=0.0091  Score=60.70  Aligned_cols=54  Identities=28%  Similarity=0.372  Sum_probs=42.9

Q ss_pred             eeccCCceeeeeeeecC-----------------CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-----------------GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-----------------g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++...+                 +..||+|++..... ...++|.+|++++++  |+|||+++
T Consensus        12 ~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   85 (296)
T cd05051          12 KLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLL   85 (296)
T ss_pred             cccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence            78999999999988643                 24589999875432 345789999999999  99999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=95.84  E-value=0.016  Score=59.12  Aligned_cols=55  Identities=20%  Similarity=0.301  Sum_probs=43.5

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||++... ++..||||.+....  ......+.+|++++++  ||||++++
T Consensus        18 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   77 (310)
T cd07865          18 AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI   77 (310)
T ss_pred             EEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceE
Confidence            47899999999999964 67899999885432  2223456789999998  99999875

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=95.83  E-value=0.0087  Score=62.49  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=43.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. ++..+|+|.++..   .....+.|.+|+.++.+  |+||+.++
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~   67 (331)
T cd05624           7 KVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLH   67 (331)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            47899999999999964 5678999998642   12234568889999888  99999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=95.83  E-value=0.012  Score=59.83  Aligned_cols=54  Identities=22%  Similarity=0.293  Sum_probs=43.4

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCC-C-ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-Q-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||+|... ++..+|+|.++.... . -...+.+|++++.+  ||||++++
T Consensus        12 ~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~   70 (293)
T cd07843          12 RIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVK   70 (293)
T ss_pred             hhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEE
Confidence            6899999999999975 578999999964322 2 23467889999999  99999864

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=95.83  E-value=0.013  Score=58.26  Aligned_cols=52  Identities=29%  Similarity=0.487  Sum_probs=43.4

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++... |..+|+|..+..  ...+.|.+|++++++  |+|+++++
T Consensus        12 ~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~   65 (256)
T cd05082          12 QTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLL   65 (256)
T ss_pred             eeecccCCCeEEEEEEc-CCcEEEEEeCCC--chHHHHHHHHHHHHhCCCCCeeeEE
Confidence            47899999999999875 678999998643  235689999999999  99999865

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=95.83  E-value=0.012  Score=59.36  Aligned_cols=55  Identities=25%  Similarity=0.332  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|++|.||++... ++..||||+++..  .....+.+.+|++++++  |+||++++
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   66 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLK   66 (288)
T ss_pred             EEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehh
Confidence            36899999999999975 5779999998643  23345789999999999  99999875

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=95.82  E-value=0.013  Score=59.30  Aligned_cols=54  Identities=24%  Similarity=0.452  Sum_probs=43.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .++..+|+|.++.. .....++.+|++++.+   |+||++++
T Consensus        24 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~   81 (286)
T cd06638          24 ETIGKGTYGKVFKVLNKKNGSKAAVKILDPI-HDIDEEIEAEYNILKALSDHPNVVKFY   81 (286)
T ss_pred             eeeccCCCcEEEEEEECCCCceeEEEeeccc-cchHHHHHHHHHHHHHHhcCCCeeeee
Confidence            3789999999999986 45789999988643 2234678899988877   99999874

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=95.82  E-value=0.014  Score=60.79  Aligned_cols=55  Identities=25%  Similarity=0.315  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .++..||||++...  .....+.+..|++++.+  |||||+++
T Consensus        16 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~   75 (328)
T cd07856          16 QPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLS   75 (328)
T ss_pred             EeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEe
Confidence            4799999999999985 47889999988532  22345778899999999  99999864

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=95.82  E-value=0.013  Score=59.46  Aligned_cols=53  Identities=26%  Similarity=0.391  Sum_probs=45.1

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++... ++..+++|++..... ..+++.+|++++++  |+|+++++
T Consensus        26 ~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~   81 (286)
T cd06614          26 KIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYY   81 (286)
T ss_pred             hccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEE
Confidence            6899999999999986 678999999975433 56789999999999  99998764

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=95.81  E-value=0.01  Score=61.09  Aligned_cols=54  Identities=24%  Similarity=0.393  Sum_probs=42.3

Q ss_pred             eeccCCceeeeeeee------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++..      ..+..||||+++.... ...+.|.+|++++++   |+|||+++
T Consensus        42 ~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~  105 (302)
T cd05055          42 TLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLL  105 (302)
T ss_pred             eeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEE
Confidence            789999999999874      2345799999875432 224679999999988   99999875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=95.80  E-value=0.011  Score=59.01  Aligned_cols=54  Identities=22%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||.|++|.||++... ++..+|+|++.... ....+++.+|++++++  |+||++++
T Consensus         8 ~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   65 (265)
T cd06605           8 ELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFY   65 (265)
T ss_pred             HhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhh
Confidence            5899999999999975 57899999986543 2345789999999998  99998764

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=95.80  E-value=0.011  Score=59.16  Aligned_cols=54  Identities=26%  Similarity=0.391  Sum_probs=41.9

Q ss_pred             eeccCCceeeeeeeecC--CceEEEEeeccC----------CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD--GSEVAIKMLSAS----------SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~--g~~VAVK~l~~~----------~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++...+  +..+|+|.+...          .....+++..|++++.+   ||||++++
T Consensus         7 ~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~   75 (269)
T cd08528           7 HLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYY   75 (269)
T ss_pred             hhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEE
Confidence            58999999999999865  578999987532          11224568889998875   99999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=95.80  E-value=0.014  Score=57.77  Aligned_cols=55  Identities=27%  Similarity=0.374  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||.++. .++..+++|.+...  +....++|.+|++++++  |+||++++
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~   65 (256)
T cd08221           6 RVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYY   65 (256)
T ss_pred             eEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEE
Confidence            4799999999888775 46788999988643  23445789999999999  99999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=95.79  E-value=0.011  Score=61.35  Aligned_cols=55  Identities=24%  Similarity=0.339  Sum_probs=41.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHH---hc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELI---DY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l---~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.++...   ....+.+.+|++++   ++  ||||++++
T Consensus         5 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~   68 (324)
T cd05589           5 AVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLF   68 (324)
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhcee
Confidence            47899999999999864 67899999996432   22345677776654   44  99999875

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=95.78  E-value=0.011  Score=60.03  Aligned_cols=55  Identities=25%  Similarity=0.337  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|++|.||++... ++..+|+|.+....   ....+.+.+|++++++  ||||++++
T Consensus         7 ~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   67 (290)
T cd05580           7 KTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLY   67 (290)
T ss_pred             EEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCcccee
Confidence            37899999999999974 57899999986432   2234678999999999  99999875

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=95.77  E-value=0.0094  Score=65.82  Aligned_cols=55  Identities=11%  Similarity=0.192  Sum_probs=43.1

Q ss_pred             EeeccCCceeeeeeeec-C-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-D-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|+||.||++.-. + +..||+|.+..........+.+|+++|++  |||||+++
T Consensus        73 ~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~  131 (478)
T PTZ00267         73 TLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHF  131 (478)
T ss_pred             EEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            37899999999999753 3 56788887754433334678899999999  99999875

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=95.77  E-value=0.012  Score=58.54  Aligned_cols=51  Identities=31%  Similarity=0.524  Sum_probs=42.4

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||++.. .+..+|+|.++..  ...+.|.+|++++++  ||||++++
T Consensus        13 ~lg~g~~g~v~~~~~-~~~~~~iK~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~   65 (254)
T cd05083          13 IIGEGEFGAVLQGEY-TGQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLL   65 (254)
T ss_pred             eeccCCCCceEeccc-CCCceEEEeecCc--chHHHHHHHHHHHHhCCCCCcCeEE
Confidence            789999999999985 5678999998643  234689999999998  99999864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=95.77  E-value=0.009  Score=61.02  Aligned_cols=55  Identities=25%  Similarity=0.353  Sum_probs=42.6

Q ss_pred             EeeccCCceeeeeeeec-----------------CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-----------------DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-----------------~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++...                 ++..+|+|+++... ....++|.+|+++|++  |+||++++
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~   85 (296)
T cd05095          11 EKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLL   85 (296)
T ss_pred             eeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            37899999999987532                 23468999997543 2345789999999999  99999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=95.76  E-value=0.011  Score=60.65  Aligned_cols=55  Identities=27%  Similarity=0.418  Sum_probs=42.5

Q ss_pred             EeeccCCceeeeeeeec--------CCceEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA--------DGSEVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~--------~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++..        ++..+|+|.++... ....+++.+|++++.+   |+|||+++
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~   90 (307)
T cd05098          24 KPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLL   90 (307)
T ss_pred             eeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEE
Confidence            37899999999998752        23469999997542 2345678899999887   99999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PHA03211 serine/threonine kinase US3; Provisional

Probab=95.76  E-value=0.012  Score=64.79  Aligned_cols=49  Identities=18%  Similarity=0.103  Sum_probs=40.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... .+..||||...      ...+.+|+++|++  |+|||+++
T Consensus       175 ~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~  226 (461)
T PHA03211        175 RALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALL  226 (461)
T ss_pred             EEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEE
Confidence            47999999999999975 46789999642      2357789999999  99999875

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=95.75  E-value=0.012  Score=60.51  Aligned_cols=54  Identities=26%  Similarity=0.485  Sum_probs=42.0

Q ss_pred             eeccCCceeeeeeeec-CCc--eEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGS--EVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~--~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|+|+||.||++... ++.  .+|+|+++... ....++|.+|++++.+   |+|||+++
T Consensus        14 ~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~   74 (303)
T cd05088          14 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL   74 (303)
T ss_pred             eecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEE
Confidence            7899999999999974 444  46888876432 3345689999999887   99999874

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=95.73  E-value=0.0092  Score=64.48  Aligned_cols=56  Identities=25%  Similarity=0.427  Sum_probs=47.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCcccccC
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      ..||+|+||.||.++-. .|..+|+|+|+.+..   ...+...+|-.+|..  ++.||+|+|
T Consensus       147 k~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyY  208 (550)
T KOG0605|consen  147 KVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYY  208 (550)
T ss_pred             eeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEE
Confidence            48999999999999864 588999999986543   335678899999998  999999985

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=95.73  E-value=0.016  Score=60.35  Aligned_cols=55  Identities=22%  Similarity=0.314  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|.|++|.||++.. .+|..||+|+++...  ....+.+.+|+++|++  |+|||+++
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   70 (334)
T cd07855          11 ENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIR   70 (334)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHH
Confidence            3789999999999986 468899999987532  2345678899999999  99999753

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=95.73  E-value=0.013  Score=58.19  Aligned_cols=54  Identities=28%  Similarity=0.553  Sum_probs=43.5

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC-----CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-----QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-----~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++.. .++..+|+|.+.....     ...+.+.+|++++++  ||||++++
T Consensus         9 ~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   70 (263)
T cd06625           9 LLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYY   70 (263)
T ss_pred             eecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeE
Confidence            789999999999986 4678999998864321     124578999999999  99999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=95.71  E-value=0.012  Score=60.44  Aligned_cols=55  Identities=27%  Similarity=0.433  Sum_probs=42.7

Q ss_pred             EeeccCCceeeeeeee--------cCCceEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL--------ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l--------~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.+|+|+||.||+++.        .++..||+|.++... ....+++.+|++++.+   |+||++++
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~   87 (304)
T cd05101          21 KPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL   87 (304)
T ss_pred             ceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchhee
Confidence            3789999999999974        124579999986432 3345789999999886   99999865

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=95.71  E-value=0.015  Score=60.39  Aligned_cols=54  Identities=26%  Similarity=0.349  Sum_probs=45.1

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||.|++|.||++... .+..+|||++....  ....+.+.+|++++++  |+||++++
T Consensus         7 ~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (330)
T cd07834           7 PIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLL   65 (330)
T ss_pred             eecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhh
Confidence            6899999999999975 47899999997543  3345789999999999  99998864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=95.67  E-value=0.018  Score=56.89  Aligned_cols=55  Identities=25%  Similarity=0.389  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..+|+|++|.||++.. .++..+|||++...  .....+++.+|+++|++  |+||++++
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   65 (256)
T cd08220           6 RVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYY   65 (256)
T ss_pred             EEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhhee
Confidence            4789999999999886 46778999998643  22345789999999999  99999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=95.65  E-value=0.012  Score=62.15  Aligned_cols=55  Identities=20%  Similarity=0.339  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..||||.++..   .....+.+.+|++++.+  |+|||+++
T Consensus         7 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~   67 (360)
T cd05627           7 KVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMF   67 (360)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEE
Confidence            47999999999999864 5789999998642   22335678899999998  99999875

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=95.63  E-value=0.0067  Score=59.79  Aligned_cols=55  Identities=25%  Similarity=0.280  Sum_probs=49.1

Q ss_pred             EeeccCCceeeeeee-ecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|||..||.++ +.++..+|+|++...+.++.++-.+|++.-++  |||+++++
T Consensus        27 ~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~   84 (302)
T KOG2345|consen   27 RLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLV   84 (302)
T ss_pred             eeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHH
Confidence            378999999999988 77888999999988877788899999999999  99998864

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=95.62  E-value=0.014  Score=62.23  Aligned_cols=55  Identities=27%  Similarity=0.416  Sum_probs=42.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC----CC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS----SS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~----~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.+|+|.||.|+.|.- ..+..||||.++..    .. ...+...+|+.++++   ||||++++
T Consensus        23 ~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~   86 (370)
T KOG0583|consen   23 RTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLL   86 (370)
T ss_pred             eeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEE
Confidence            3789999999999974 56799999976542    12 234556689999998   99999874

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=95.62  E-value=0.016  Score=58.81  Aligned_cols=55  Identities=24%  Similarity=0.396  Sum_probs=43.7

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccCC----CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSASS----SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..+|+|+||.||.+..    ++|..||+|++....    ....+++.+|+++|.+   |+||++++
T Consensus         6 ~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~   71 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLH   71 (290)
T ss_pred             eeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhcee
Confidence            3689999999999885    468899999986432    1234678899999988   89999875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=95.61  E-value=0.02  Score=55.01  Aligned_cols=54  Identities=30%  Similarity=0.522  Sum_probs=46.0

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||++...+ +..+|+|.+...... ..+.+.+|++.+.+  |+|+++++
T Consensus         6 ~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~   63 (225)
T smart00221        6 KLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLY   63 (225)
T ss_pred             EeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhhe
Confidence            68999999999999875 789999999765444 56789999999999  99998864

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=95.60  E-value=0.019  Score=56.59  Aligned_cols=54  Identities=31%  Similarity=0.524  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++... ++..+++|.+.....  ...+++.+|++++++  |+|+++++
T Consensus         7 ~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (254)
T cd06627           7 LIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYI   65 (254)
T ss_pred             EEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEE
Confidence            6899999999999864 577999999976543  345789999999999  99998864

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=95.59  E-value=0.01  Score=58.74  Aligned_cols=55  Identities=29%  Similarity=0.524  Sum_probs=41.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCC--hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQG--PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~--~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..+|+|.+.......  ..+...|++++.+  |+||++++
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~   64 (260)
T PF00069_consen    5 KKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQIL   64 (260)
T ss_dssp             EEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEE
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccc
Confidence            47899999999999975 45689999997553222  1234568999998  99999764

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=95.57  E-value=0.016  Score=60.56  Aligned_cols=54  Identities=20%  Similarity=0.310  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccC--CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSAS--SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|+|+||.||+|... +|..+|||++...  .....+.+.+|++++++   |+||++++
T Consensus        14 ~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~   73 (337)
T cd07852          14 KLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLL   73 (337)
T ss_pred             hhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCcccee
Confidence            6899999999999975 5789999988542  22334678889999887   99999875

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=95.57  E-value=0.015  Score=61.99  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=43.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..+|+|.+...   .....+.+.+|+++++.  |||||+++
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~  109 (371)
T cd05622          49 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLF  109 (371)
T ss_pred             EEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            47999999999999975 5678999998532   22234568899999988  99999875

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=95.56  E-value=0.017  Score=66.49  Aligned_cols=55  Identities=20%  Similarity=0.333  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.++.....   ..+++.+|+++++.  |+|||+++
T Consensus        10 ~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~   70 (669)
T cd05610          10 KPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLY   70 (669)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEE
Confidence            47899999999999975 6789999998643222   23678899999988  99999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=95.56  E-value=0.013  Score=61.23  Aligned_cols=55  Identities=22%  Similarity=0.338  Sum_probs=43.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... .+..+|+|.+...   .....+.|.+|+.++.+  |+||++++
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   67 (332)
T cd05623           7 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLH   67 (332)
T ss_pred             EEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEE
Confidence            47999999999999975 4678999998532   12234568899999888  99999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=95.56  E-value=0.019  Score=58.60  Aligned_cols=55  Identities=18%  Similarity=0.360  Sum_probs=43.5

Q ss_pred             EeeccCCceeeeeeeecC-CceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-GSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..+|+|++|.||++...+ +..||||+++.... ...+++..|++++.+   |+||++++
T Consensus        21 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~   80 (296)
T cd06618          21 GEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCY   80 (296)
T ss_pred             eEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhh
Confidence            378999999999999865 88999999965432 234667788877766   89999875

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=95.55  E-value=0.016  Score=60.34  Aligned_cols=55  Identities=24%  Similarity=0.375  Sum_probs=42.7

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccCC----CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSASS----SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++.    .++..+|+|.++...    ....+.+..|+++|.+   |+||+.++
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~   71 (332)
T cd05614           6 KVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLH   71 (332)
T ss_pred             EEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEE
Confidence            4789999999998875    357899999986421    2234568899999987   89999874

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=95.53  E-value=0.0099  Score=61.36  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|.+|.|.++.- .+|..||||++...  ..-..+.=.+|+++|..  |+|||.++
T Consensus        28 ~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~   87 (359)
T KOG0660|consen   28 EPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLL   87 (359)
T ss_pred             ccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEE
Confidence            3689999999999986 57899999999632  22335777899999999  99999875

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=95.52  E-value=0.018  Score=59.43  Aligned_cols=54  Identities=28%  Similarity=0.326  Sum_probs=43.6

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|+||.||+|.. .+|..|++|.+......   ..+++.+|++++++  |+|+++++
T Consensus        28 ~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   87 (313)
T cd06633          28 EIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYK   87 (313)
T ss_pred             eeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEE
Confidence            689999999999986 46789999998643322   23578899999999  99999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=95.51  E-value=0.014  Score=66.56  Aligned_cols=55  Identities=29%  Similarity=0.395  Sum_probs=45.3

Q ss_pred             eeccCCceeeeeeeec----C----CceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLA----D----GSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~----~----g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~~  581 (581)
                      .+|+|.||.|++|.+.    .    ...||||+++..... ..+.+..|+++|+.   |+|||.|++
T Consensus       303 ~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  303 YLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             eeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            5899999999999863    1    357999999865443 45789999999998   999999875

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=95.51  E-value=0.017  Score=63.33  Aligned_cols=54  Identities=26%  Similarity=0.454  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|.|+.|..+.- ..+..||||.+++....  ..+.+.+|+++|..  |||||+|+
T Consensus        63 tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~  121 (596)
T KOG0586|consen   63 TIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLF  121 (596)
T ss_pred             eeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeee
Confidence            789999999999885 45889999999765332  24669999999999  99999985

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=95.50  E-value=0.015  Score=59.17  Aligned_cols=55  Identities=29%  Similarity=0.456  Sum_probs=42.5

Q ss_pred             EeeccCCceeeeeeeecC------CceEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD------GSEVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..+|+|++|.||++...+      ...+|+|.++... .+...++.+|++++.+   |+||++++
T Consensus        18 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~   82 (293)
T cd05053          18 KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL   82 (293)
T ss_pred             eEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            378999999999998642      3579999987532 2334678999998887   99999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=95.45  E-value=0.023  Score=57.15  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=41.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.+|+|+||.||++.. .++..+|+|+++.... ....+...|++++.+   |+||++++
T Consensus         5 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~   64 (282)
T cd07831           5 GKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLI   64 (282)
T ss_pred             eeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceE
Confidence            3689999999999986 4678999999875422 223345678888877   99999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=95.43  E-value=0.023  Score=59.20  Aligned_cols=55  Identities=29%  Similarity=0.363  Sum_probs=43.3

Q ss_pred             EeeccCCceeeeeeeec-C--CceEEEEeeccCC--CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-D--GSEVAIKMLSASS--SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~--g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++... .  +..+|+|++....  ....+.+.+|++++.+   |||||+++
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~   68 (332)
T cd07857           6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLY   68 (332)
T ss_pred             EEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheee
Confidence            36899999999999974 3  6789999986432  2235678899999986   99999875

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=95.42  E-value=0.024  Score=55.76  Aligned_cols=55  Identities=27%  Similarity=0.416  Sum_probs=45.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|.|++|.||++... ++..+++|++.....  ...+++.+|++++++  |+|+++++
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~   65 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYY   65 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheE
Confidence            36899999999999975 578999999965433  445789999999999  99998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.42  E-value=0.0091  Score=62.50  Aligned_cols=65  Identities=29%  Similarity=0.435  Sum_probs=56.2

Q ss_pred             ceeEeecCCCCCceecchhhh-cccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          447 KIISLNLTSEGLTGKISPSLS-NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .+..+.+..|.+. .+|.+.+ .|.+|..|||..|++. ++|++++.+.+|+.||+|+|.+++ +|.++
T Consensus       229 ~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sL  294 (565)
T KOG0472|consen  229 LLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSL  294 (565)
T ss_pred             HHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCccc
Confidence            4677888888876 6788776 8999999999999998 899999999999999999999984 55554

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.42  E-value=0.0098  Score=57.93  Aligned_cols=51  Identities=20%  Similarity=0.479  Sum_probs=44.5

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|.|.++.|+.|. +.+...++||.|++.   ..++..+||.+|..   |||||.|+
T Consensus        45 k~GRGKYSEVFeg~~~~~~eK~ViKiLKPV---kkkKIkREikIL~nL~gg~NIi~L~   99 (338)
T KOG0668|consen   45 KVGRGKYSEVFEGINITNNEKCVIKILKPV---KKKKIKREIKILQNLRGGPNIIKLL   99 (338)
T ss_pred             HHcCccHhhHhcccccCCCceEEEeeechH---HHHHHHHHHHHHHhccCCCCeeehh
Confidence            68999999999998 567789999999875   34678999999998   99999985

>PHA03207 serine/threonine kinase US3; Provisional

Probab=95.41  E-value=0.019  Score=61.52  Aligned_cols=50  Identities=16%  Similarity=0.224  Sum_probs=40.4

Q ss_pred             EeeccCCceeeeeeeec---CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA---DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...   .+..||||.+...     +.+.+|+++|++  |||||+++
T Consensus        98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~  152 (392)
T PHA03207         98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLI  152 (392)
T ss_pred             EeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCcccee
Confidence            47899999999998753   3468999988532     346789999999  99999875

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=95.39  E-value=0.02  Score=57.49  Aligned_cols=54  Identities=26%  Similarity=0.374  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||+|+.. ++..+|+|.+....  ....+++..|++++++  |+||++++
T Consensus         6 ~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   64 (282)
T cd07829           6 KLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLL   64 (282)
T ss_pred             cccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHH
Confidence            6899999999999975 48899999997543  2335788999999999  99999864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=95.39  E-value=0.023  Score=56.28  Aligned_cols=55  Identities=22%  Similarity=0.294  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++... ++..+|+|.++... ....+++.+|++++++  |+||++++
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   64 (255)
T cd08219           6 RVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFK   64 (255)
T ss_pred             EEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            47899999999999864 57889999886432 2345778899999998  99999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=95.37  E-value=0.019  Score=58.92  Aligned_cols=55  Identities=15%  Similarity=0.336  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|+||.||++... .+..|++|.+....   ....+++.+|++++.+  |+||++++
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~   67 (305)
T cd05609           7 KLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMF   67 (305)
T ss_pred             eEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeE
Confidence            47899999999999864 56789999986543   2234678899999999  99999875

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=95.35  E-value=0.024  Score=56.94  Aligned_cols=54  Identities=28%  Similarity=0.603  Sum_probs=43.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc-----CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      .+|+|+||.||+|.. .++..+|||.++... ....+++.+|++++++     |||+++++
T Consensus         8 ~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~   68 (277)
T cd06917           8 LIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYY   68 (277)
T ss_pred             heeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEe
Confidence            589999999999996 568899999986442 3345678899988776     89998764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=95.33  E-value=0.011  Score=61.94  Aligned_cols=54  Identities=33%  Similarity=0.521  Sum_probs=44.6

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|-+|.|-++.- ..|+.||||.++.+..   |..-...+||++|+.  ||||++++
T Consensus        60 tLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~Iy  119 (668)
T KOG0611|consen   60 TLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIY  119 (668)
T ss_pred             HhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehh
Confidence            579999999999885 5689999999976543   444456899999999  99999864

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=95.32  E-value=0.021  Score=59.42  Aligned_cols=55  Identities=24%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .+|..||+|.++..   .....+.+..|++++..   |++|++++
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~   67 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLH   67 (323)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhhee
Confidence            4799999999999986 46789999998643   22345678888888876   56676653

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=95.31  E-value=0.021  Score=59.27  Aligned_cols=56  Identities=27%  Similarity=0.326  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC-hHHHHHHHHHHhc--CCCcccccC
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG-PKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~-~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      ..+|+|..|+|||+.- ..++..|+|.+....... .++..+|++++.+  ||+||.+++
T Consensus        85 ~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~yg  144 (364)
T KOG0581|consen   85 GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYG  144 (364)
T ss_pred             hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeE
Confidence            3789999999999997 467899999995443333 4789999999999  999998763

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.26  E-value=0.0091  Score=42.73  Aligned_cols=33  Identities=36%  Similarity=0.929  Sum_probs=23.0

Q ss_pred             cchhhhhhhhhhhcc-----CCCCCCC----CCCCCCcccccCccCC
Q 008008          402 QDDVNAIMDIKLSYD-----LGKGWQG----DPCSPMYYSWDGLNCS  439 (581)
Q Consensus       402 ~~d~~aL~~~k~~~~-----~~~~W~g----~pC~~~~~~W~Gv~C~  439 (581)
                      ++|.++|++||+.+.     .+.+|+.    +||     .|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence            468999999998875     2568963    556     79999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=95.26  E-value=0.026  Score=56.95  Aligned_cols=53  Identities=25%  Similarity=0.597  Sum_probs=42.9

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|.|+||.||+|.. .++..+|+|..... .....++..|+.++.+   |+||++++
T Consensus        23 ~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~~~~h~~i~~~~   79 (282)
T cd06636          23 VVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-EDEEEEIKLEINMLKKYSHHRNIATYY   79 (282)
T ss_pred             eeccCCCeEEEEEEEcCCCcEEEEEEEecC-hHHHHHHHHHHHHHHHhcCCCcEEEEe
Confidence            689999999999997 46789999988543 2334678899998887   99999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=95.26  E-value=0.02  Score=59.67  Aligned_cols=54  Identities=28%  Similarity=0.397  Sum_probs=41.7

Q ss_pred             eeccCCceeeeeeeec--------CCceEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA--------DGSEVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~--------~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++...        ....||+|.++... ....++|.+|++++.+   |+|||+++
T Consensus        19 ~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~   84 (334)
T cd05100          19 PLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLL   84 (334)
T ss_pred             eeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeee
Confidence            7899999999998742        12368999886432 2345789999999987   99999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=95.24  E-value=0.029  Score=56.49  Aligned_cols=55  Identities=27%  Similarity=0.363  Sum_probs=41.1

Q ss_pred             EeeccCCceeeeeeeecC-CceEEEEeeccCCC--CChHHHHHHHHHHhc-----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-GSEVAIKMLSASSS--QGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      +.+|+|+||.||++...+ +..+|+|+++....  ....++.+|++++.+     |+||++++
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~   67 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLL   67 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEE
Confidence            368999999999999864 88999999964322  223457778776543     99999864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=95.21  E-value=0.03  Score=55.81  Aligned_cols=54  Identities=24%  Similarity=0.515  Sum_probs=44.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..+|+|++|.||++... ++..+++|.++... ...++|.+|++++++   |+||++++
T Consensus        12 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~   69 (275)
T cd06608          12 EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE-DEEEEIKEEYNILRKYSNHPNIATFY   69 (275)
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEEecCc-hhHHHHHHHHHHHHHhcCCCChheEE
Confidence            37899999999999974 56789999986543 245789999999987   99999864

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=95.19  E-value=0.031  Score=56.17  Aligned_cols=54  Identities=28%  Similarity=0.369  Sum_probs=44.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|.|++|.||++... ++..+++|+++....  ...+.+..|++++++  |+||++++
T Consensus         6 ~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   64 (283)
T cd05118           6 KIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLL   64 (283)
T ss_pred             eeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHH
Confidence            6899999999999874 678999999865432  235678899999999  99999864

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=95.19  E-value=0.03  Score=55.43  Aligned_cols=55  Identities=27%  Similarity=0.385  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.+|+|++|.||++... ++..+|+|++....  ....+.+.+|++++++  |+|+++++
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (257)
T cd08223           6 RVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYR   65 (257)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeee
Confidence            47899999999999864 56789999986432  2345678999999999  99999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=95.18  E-value=0.024  Score=58.84  Aligned_cols=54  Identities=24%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--C-CCcccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--Y-KNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H-~NlV~l  579 (581)
                      +.||+|+||.||+|... .+..||||.++..   .....+.+..|++++..  | ++|+.+
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~   66 (324)
T cd05587           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQL   66 (324)
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeee
Confidence            47899999999999975 4678999998643   23345678899998887  5 456655

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=95.16  E-value=0.023  Score=56.93  Aligned_cols=54  Identities=28%  Similarity=0.381  Sum_probs=43.7

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+|.|++|.||++... +|..+|+|.+....   ....+++.+|++++.+   |+||++++
T Consensus         8 ~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~   68 (280)
T cd05581           8 IIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLY   68 (280)
T ss_pred             eecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHH
Confidence            6899999999999975 68899999986532   2334678899999988   99999864

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>PRK10345 hypothetical protein; Provisional

Probab=95.14  E-value=0.027  Score=55.13  Aligned_cols=52  Identities=23%  Similarity=0.402  Sum_probs=40.5

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc-------CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY-------YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~-------H~NlV~l~  580 (581)
                      .||+|+||.||. .-.++.. +||+......+..+++.+|++++.+       ||||++++
T Consensus         9 ~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~y   67 (210)
T PRK10345          9 PLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYY   67 (210)
T ss_pred             eecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceee
Confidence            689999999996 3344444 7998876545566789999999886       59999876

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=95.14  E-value=0.029  Score=66.36  Aligned_cols=55  Identities=22%  Similarity=0.263  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... .+..+|+|.+....  ......|..|+++|.+  |||||+++
T Consensus        19 ~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~   78 (1021)
T PTZ00266         19 KKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYI   78 (1021)
T ss_pred             EEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEE
Confidence            47999999999999964 56689999886432  2235679999999999  99999875

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=95.12  E-value=0.028  Score=57.91  Aligned_cols=54  Identities=28%  Similarity=0.340  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||+|... ++..+|+|.+....   ....+++.+|++++++  |+|+++++
T Consensus        22 ~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   81 (308)
T cd06634          22 EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYR   81 (308)
T ss_pred             heeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEE
Confidence            6899999999999964 57789999886432   2234678899999999  99999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=95.11  E-value=0.023  Score=57.56  Aligned_cols=55  Identities=25%  Similarity=0.413  Sum_probs=43.3

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccCC----CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSASS----SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..+|+|++|.||++..    .++..+|||.++...    ....+++.+|++++.+   |+||++++
T Consensus         6 ~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~   71 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLH   71 (288)
T ss_pred             EEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhh
Confidence            3689999999999875    356789999986421    2335678999999998   99999875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>PHA03209 serine/threonine kinase US3; Provisional

Probab=95.09  E-value=0.034  Score=58.79  Aligned_cols=49  Identities=16%  Similarity=0.150  Sum_probs=39.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|... .+..||+|.....      ....|+.++++  |+|||+++
T Consensus        72 ~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~  123 (357)
T PHA03209         72 KTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMK  123 (357)
T ss_pred             EEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChh
Confidence            47899999999999975 4568999975322      23568999999  99999875

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=95.09  E-value=0.023  Score=58.56  Aligned_cols=55  Identities=29%  Similarity=0.420  Sum_probs=42.2

Q ss_pred             EeeccCCceeeeeeeec--------CCceEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA--------DGSEVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~--------~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.+|+|+||.||+++..        ....+|+|.++... .....++..|++++.+   |||||+++
T Consensus        18 ~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~   84 (314)
T cd05099          18 KPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLL   84 (314)
T ss_pred             eeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEE
Confidence            37899999999998741        24578999987542 2335678999999987   99999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=95.07  E-value=0.025  Score=59.25  Aligned_cols=55  Identities=29%  Similarity=0.402  Sum_probs=43.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|++|.||+|... ++..||||++...  .....+++.+|++++++  |+||++++
T Consensus        21 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   80 (343)
T cd07851          21 SPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLL   80 (343)
T ss_pred             EEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHH
Confidence            47899999999999975 5789999998643  22234678889999998  99998753

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=95.01  E-value=0.029  Score=58.20  Aligned_cols=55  Identities=24%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..+|||.++...   ....+++..|.+++..   |++|+.++
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~   67 (323)
T cd05616           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLH   67 (323)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEE
Confidence            47899999999999865 56799999986432   2234567778877765   88887654

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=94.96  E-value=0.04  Score=55.92  Aligned_cols=54  Identities=30%  Similarity=0.474  Sum_probs=42.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..+|+|+||.||++.. .++..+|+|.+.... ....++.+|++++.+   ||||++++
T Consensus        28 ~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~   85 (291)
T cd06639          28 ETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFY   85 (291)
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            3789999999999997 467899999986432 224677888888876   99999864

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=94.96  E-value=0.032  Score=57.94  Aligned_cols=52  Identities=15%  Similarity=0.176  Sum_probs=40.3

Q ss_pred             ccCCceeeeeeee-cCCceEEEEeeccCCC-C-ChHHHHHHHHHHhc--CCCccccc
Q 008008          529 GKGGFGTVYHGYL-ADGSEVAIKMLSASSS-Q-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       529 G~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      |.++|+.||++.. .+|..||||+++.... . ..+.+.+|+++++.  |||||+++
T Consensus         9 G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~   65 (327)
T cd08227           9 GFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYR   65 (327)
T ss_pred             cccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEE
Confidence            5558999999986 5788999999965422 2 23567789999998  99999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=94.95  E-value=0.011  Score=58.77  Aligned_cols=55  Identities=24%  Similarity=0.332  Sum_probs=45.4

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~~  581 (581)
                      .||.|.||+|+|-.- +.|..+|||+++.... ...++|..|.+...+   -||||++++
T Consensus        71 ~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyG  130 (361)
T KOG1006|consen   71 EIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYG  130 (361)
T ss_pred             HhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhh
Confidence            689999999999775 5788999999976543 556789999988776   999999864

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.91  E-value=0.0042  Score=68.10  Aligned_cols=54  Identities=22%  Similarity=0.357  Sum_probs=44.4

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      -+|-|.||.|||+.-.+ +...|-|++.-.+....++|.-||++|+.  ||+||.|+
T Consensus        39 ELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl   95 (1187)
T KOG0579|consen   39 ELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLL   95 (1187)
T ss_pred             hhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHH
Confidence            46889999999998654 33456788866666678899999999998  99999986

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=94.76  E-value=0.044  Score=56.94  Aligned_cols=53  Identities=19%  Similarity=0.322  Sum_probs=41.8

Q ss_pred             eccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          528 LGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       528 iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      -|.|+||.||.++. .+|..||||.+.....  ...+.+.+|+.+++.  |||||+++
T Consensus         8 ~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~   65 (328)
T cd08226           8 RGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSW   65 (328)
T ss_pred             CcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEe
Confidence            37789999999986 4789999999864322  224678899999887  99999864

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=94.74  E-value=0.043  Score=55.26  Aligned_cols=54  Identities=28%  Similarity=0.266  Sum_probs=41.1

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||.|++|.||+|... ++..|+||++...... ......+|++.+++   |+||++++
T Consensus         6 ~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~   64 (283)
T cd07830           6 QLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLK   64 (283)
T ss_pred             eeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHH
Confidence            6899999999999985 4678999998654321 22345678888887   99998764

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.62  E-value=0.06  Score=59.99  Aligned_cols=56  Identities=25%  Similarity=0.383  Sum_probs=43.8

Q ss_pred             EEeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc---CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.++|+|.||+|+.+.+. ++...|||.|++..   ....+..+.|-.++.-   ||-|++|+
T Consensus       373 l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~  435 (694)
T KOG0694|consen  373 LAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLF  435 (694)
T ss_pred             EEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecc
Confidence            358999999999999985 56789999998653   3445667777766554   99999885

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=94.59  E-value=0.046  Score=53.93  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=43.4

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|++|.||++.. .++..+++|.+....  .....++.+|++++++  |+||++++
T Consensus         7 ~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~   65 (256)
T cd08530           7 KLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYK   65 (256)
T ss_pred             eecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhh
Confidence            689999999999875 467899999986432  2335678899999999  99999764

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=94.52  E-value=0.011  Score=64.90  Aligned_cols=54  Identities=31%  Similarity=0.535  Sum_probs=42.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeecc----CCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSA----SSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~----~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++|+|.|-+||||.- .+|..||--.++.    .+....+.|..|+++|+.  |+|||+++
T Consensus        47 vLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy  107 (632)
T KOG0584|consen   47 VLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFY  107 (632)
T ss_pred             hcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeee
Confidence            789999999999996 3577887554432    122335789999999999  99999986

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=94.31  E-value=0.05  Score=55.90  Aligned_cols=52  Identities=15%  Similarity=0.070  Sum_probs=40.4

Q ss_pred             eccCCceeeeeeeecCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          528 LGKGGFGTVYHGYLADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       528 iG~g~fg~Vykg~l~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .|.|+++.+|++.. ++..||||+++..  .....+.+..|++++++  |+||++++
T Consensus        10 ~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~   65 (314)
T cd08216          10 FEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYV   65 (314)
T ss_pred             hcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhh
Confidence            46667777777765 6889999998643  23345789999999999  99999875

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.22  E-value=0.01  Score=53.55  Aligned_cols=68  Identities=24%  Similarity=0.408  Sum_probs=58.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      +.++.|+|++|.++ .+|.++..++.|+.|++++|.|. ..|.-+.+|.+|..|+..+|... +||-.++-
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~  144 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY  144 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc
Confidence            46888999999998 78999999999999999999998 67887888999999998888765 77776543

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=94.11  E-value=0.018  Score=62.63  Aligned_cols=47  Identities=26%  Similarity=0.335  Sum_probs=39.3

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      -+|.|.=|.||.|+++ ++.||||+++...       .+||+.|.+  |+||+.+++
T Consensus       131 WlGSGaQGAVF~Grl~-netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkG  179 (904)
T KOG4721|consen  131 WLGSGAQGAVFLGRLH-NETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKG  179 (904)
T ss_pred             hhccCcccceeeeecc-CceehhHHHhhhh-------hhhHHHHHhccCcceeeEee
Confidence            5799999999999998 4789999986432       367889999  999998863

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=94.09  E-value=0.025  Score=53.64  Aligned_cols=57  Identities=42%  Similarity=0.597  Sum_probs=13.7

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccc-cCCCccccccccCccC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL-SQLPLLRVLNLDGNKL  506 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~ls~N~l  506 (581)
                      ++..|+|++|+++. +. .+..++.|+.|++++|.++ .++..+ ..+++|+.|+|++|++
T Consensus        43 ~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I  100 (175)
T PF14580_consen   43 KLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKI  100 (175)
T ss_dssp             T--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS--
T ss_pred             CCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcC
Confidence            34445555555442 21 3344444555555555554 232222 1344455555555544

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=94.01  E-value=0.025  Score=57.51  Aligned_cols=53  Identities=25%  Similarity=0.390  Sum_probs=41.8

Q ss_pred             eeccCCceeeeeeeecC-----CceEEEEeeccCCCC-C-hHHHHHHHHHHhc--CCCcccc
Q 008008          527 ILGKGGFGTVYHGYLAD-----GSEVAIKMLSASSSQ-G-PKQFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-----g~~VAVK~l~~~~~~-~-~~ef~~Ei~~l~~--H~NlV~l  579 (581)
                      .||+|-+|.|||+.-.+     ...+|||+++..+.+ | ...-++||.+++.  |||||+|
T Consensus        31 ~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~L   92 (438)
T KOG0666|consen   31 KIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISL   92 (438)
T ss_pred             eecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhH
Confidence            68999999999996432     237899999755433 3 4678999999998  9999987

>PHA03210 serine/threonine kinase US3; Provisional

Probab=93.87  E-value=0.024  Score=63.05  Aligned_cols=54  Identities=19%  Similarity=0.237  Sum_probs=35.9

Q ss_pred             EeeccCCceeeeeeeecCC--ceEEEE------------------eeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADG--SEVAIK------------------MLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g--~~VAVK------------------~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.+...  ...++|                  ++. ......++|.+|+++|++  |+|||+++
T Consensus       154 ~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~-~~~~~~~~~~~Ei~il~~l~HpnIv~l~  229 (501)
T PHA03210        154 DDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVK-AGSRAAIQLENEILALGRLNHENILKIE  229 (501)
T ss_pred             eEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhh-cchHHHHHHHHHHHHHHhCCCCCcCcEe
Confidence            4799999999998876421  122222                  111 111224568899999999  99999875

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=93.83  E-value=0.016  Score=44.63  Aligned_cols=44  Identities=48%  Similarity=0.694  Sum_probs=35.8

Q ss_pred             cCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          470 KSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       470 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      ++|+.|++++|+++.--+..+..+++|++|++++|++. .+|...
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~   44 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDA   44 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTT
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHH
Confidence            46899999999999444467788999999999999997 555544

...

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=93.64  E-value=0.081  Score=52.57  Aligned_cols=54  Identities=28%  Similarity=0.297  Sum_probs=38.5

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccC-----CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSAS-----SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~-----~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.... +..+++|.++..     ..+...++..|++++++  ||||++++
T Consensus         7 ~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (260)
T cd08222           7 RLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFH   68 (260)
T ss_pred             eecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHH
Confidence            68999999999998643 344555655432     22234567789999998  99999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=93.64  E-value=0.026  Score=61.81  Aligned_cols=62  Identities=32%  Similarity=0.337  Sum_probs=45.1

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      ..+..|+|+.|+++..-..++..|++|+.|+||.|.+...-++.+.-+++|++|+|++|+++
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            34667777777776433446677778888888888777666777777778888888888777

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=93.57  E-value=0.031  Score=57.05  Aligned_cols=54  Identities=24%  Similarity=0.385  Sum_probs=44.6

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ++|+|.++.|--.. +..|..+|||.+.+..........+|++++.+   |+||++|+
T Consensus        85 ~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLi  142 (463)
T KOG0607|consen   85 LLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLI  142 (463)
T ss_pred             HhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHH
Confidence            68999999986544 67889999999976644456778899999987   99999885

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=93.25  E-value=0.0095  Score=58.59  Aligned_cols=54  Identities=24%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeecc--CCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSA--SSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~--~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|.|+.||+-. -+.|+..|+|.++.  -+..+.++..+|+.+..+  |||||+|+
T Consensus        18 ~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~   76 (355)
T KOG0033|consen   18 ELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLH   76 (355)
T ss_pred             HHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehh
Confidence            68999999999755 35677777777642  233467899999999888  99999985

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=93.24  E-value=0.035  Score=60.46  Aligned_cols=54  Identities=22%  Similarity=0.375  Sum_probs=47.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeecc--CCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSA--SSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~--~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+||.+.|||..-.+.+.+|+|++..  ...+...-|.+||++|.+   |.+||+|+
T Consensus       368 ~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~  426 (677)
T KOG0596|consen  368 QIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLY  426 (677)
T ss_pred             hhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEe
Confidence            7999999999999998888999998753  345667889999999999   99999986

>PTZ00284 protein kinase; Provisional

Probab=93.17  E-value=0.11  Score=57.02  Aligned_cols=46  Identities=20%  Similarity=0.429  Sum_probs=34.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY  572 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~  572 (581)
                      ..||+|+||.||++.. ..+..||||+++... ...+++..|++++.+
T Consensus       135 ~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~  181 (467)
T PTZ00284        135 SLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEK  181 (467)
T ss_pred             EEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHH
Confidence            4799999999999986 457789999996432 234566777777766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.13  E-value=0.05  Score=62.56  Aligned_cols=58  Identities=41%  Similarity=0.587  Sum_probs=35.4

Q ss_pred             eeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       448 l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      ++.|+||+|.|+ .+|..+.++..|+.|...+|++. .+| ++.+++.|+.+|++.|+|+-
T Consensus       409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhh
Confidence            444555555554 45555555555555555555554 455 66777777777777777763

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.13  E-value=0.027  Score=34.08  Aligned_cols=19  Identities=68%  Similarity=0.843  Sum_probs=11.4

Q ss_pred             CCeEeCCCCCCCCCcccccc
Q 008008          472 LENLDLSNNSLTGSIPEFLS  491 (581)
Q Consensus       472 L~~L~Ls~N~l~G~iP~~l~  491 (581)
                      |+.|||++|+++ .||+.++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            556666666666 5665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=92.96  E-value=0.11  Score=60.39  Aligned_cols=62  Identities=31%  Similarity=0.564  Sum_probs=47.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      +.++.|+|++|.++ .+|..+  .+.|+.|+|++|+|+ .+|..+.  ..|+.|++++|+|. .+|.++
T Consensus       346 ~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        346 PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence            56888899999887 466655  367889999999988 6777654  36888999999988 677665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=92.95  E-value=0.035  Score=56.20  Aligned_cols=59  Identities=31%  Similarity=0.437  Sum_probs=37.0

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  506 (581)
                      .|.+..|+||.|++.- + ..+..|.+|+.||||+|.|+ .+-..-.++-+.+.|.|+.|.+
T Consensus       306 ~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~i  364 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKI  364 (490)
T ss_pred             ccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhH
Confidence            4667777777777652 2 23666777777777777765 2322233455667777777754

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=92.87  E-value=0.041  Score=62.52  Aligned_cols=50  Identities=34%  Similarity=0.450  Sum_probs=38.6

Q ss_pred             eeccCCce-eeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFG-TVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg-~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ++|.|.-| .||+|.++ |+.||||++-..   ...--.+||+.|..   |||||+.+
T Consensus       516 ilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e---~~~~A~rEi~lL~eSD~H~NviRyy  569 (903)
T KOG1027|consen  516 ILGYGSNGTVVFRGVYE-GREVAVKRLLEE---FFDFAQREIQLLQESDEHPNVIRYY  569 (903)
T ss_pred             HcccCCCCcEEEEEeeC-CceehHHHHhhH---hHHHHHHHHHHHHhccCCCceEEEE
Confidence            67888877 57999997 679999999321   11223699999988   99999875

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=92.86  E-value=0.081  Score=57.17  Aligned_cols=54  Identities=24%  Similarity=0.401  Sum_probs=42.0

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      -+|+|.|..|-.++ .=.|..||||++......  ...+...|+.-|+-  |||||+|+
T Consensus        25 TlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLY   83 (864)
T KOG4717|consen   25 TLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLY   83 (864)
T ss_pred             hhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeee
Confidence            58999998887666 346899999999765433  34677788887776  99999986

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=92.85  E-value=0.018  Score=66.12  Aligned_cols=63  Identities=33%  Similarity=0.521  Sum_probs=41.0

Q ss_pred             CceeEeecCCCCCceecch-hhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~-~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .++..|+|+.|.|. .+|. .+.++..|+.|+||+|.|+ .+|..+..+..|++|..-+|++. .+|
T Consensus       383 ~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP  446 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP  446 (1081)
T ss_pred             cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech
Confidence            35666777777665 4444 3556666777777777776 66677777777777776666665 445

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=92.62  E-value=0.06  Score=54.43  Aligned_cols=53  Identities=23%  Similarity=0.374  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .+|+|++|.|||+.- +.|..||||++-..  ...+|...||.++.+  .|++|+.++
T Consensus        40 KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYG   95 (502)
T KOG0574|consen   40 KLGEGSYGSVHKAIHRESGHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYG   95 (502)
T ss_pred             HhcCCcchHHHHHHHhccCcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhh
Confidence            579999999999985 56889999998543  357899999999999  899998763

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=92.58  E-value=0.071  Score=63.39  Aligned_cols=55  Identities=29%  Similarity=0.438  Sum_probs=46.5

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeec--cCCCCChHHHHHHHHHHhc--CCCcccccC
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLS--ASSSQGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~--~~~~~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      .||.|-||.||-+. +++|...|+|.++  +......+...+|+.+|..  |||||+.++
T Consensus      1242 ~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyG 1301 (1509)
T KOG4645|consen 1242 FIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYG 1301 (1509)
T ss_pred             ccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCc
Confidence            79999999999877 6788999999875  3344567889999999999  999998764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=92.57  E-value=0.11  Score=49.24  Aligned_cols=62  Identities=42%  Similarity=0.621  Sum_probs=31.1

Q ss_pred             CCceeEeecCCCCCceecchhh-hcccCCCeEeCCCCCCCCCc-cccccCCCccccccccCccCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSI-PEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l-~~l~~L~~L~Ls~N~l~G~i-P~~l~~l~~L~~L~ls~N~l~  507 (581)
                      ..++..|+|++|.++ .+...+ ..+++|+.|+|++|++...- =..+..++.|+.|+|.+|.++
T Consensus        63 L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   63 LPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             hhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            367999999999998 455555 46899999999999996421 145678899999999999886

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=92.53  E-value=0.063  Score=55.28  Aligned_cols=63  Identities=30%  Similarity=0.452  Sum_probs=43.8

Q ss_pred             ceeEeecCCCCCce----ecchhhhcc-cCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCCC
Q 008008          447 KIISLNLTSEGLTG----KISPSLSNL-KSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G----~ip~~l~~l-~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .++.|++++|.+++    .+...+..+ +.|+.|+|++|.+++.    ++..+..+..|+.|++++|++++.
T Consensus       109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            47888888887763    233445566 7788888888888753    334455667788888888888753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=92.34  E-value=0.12  Score=55.48  Aligned_cols=56  Identities=20%  Similarity=0.300  Sum_probs=41.8

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.+|+|+||.++..+- .++..+++|.+...  +....+.-..|+++|++  |||||..+
T Consensus         9 ~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~   69 (426)
T KOG0589|consen    9 LRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYK   69 (426)
T ss_pred             hhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeec
Confidence            45799999998875442 35678999988643  23334567899999999  99999753

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=92.33  E-value=0.21  Score=49.52  Aligned_cols=53  Identities=9%  Similarity=0.060  Sum_probs=40.2

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChH---------HHHHHHHHHhc--CCCcccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPK---------QFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~---------ef~~Ei~~l~~--H~NlV~l  579 (581)
                      +++|.|+||.||.... ++..+|||.+++......+         .|.+|++.+.+  |++|...
T Consensus        37 ~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~  100 (232)
T PRK10359         37 KVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASL  100 (232)
T ss_pred             EEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcc
Confidence            4799999999998655 5668999999754332222         26899999998  9998754

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=92.19  E-value=0.074  Score=54.72  Aligned_cols=70  Identities=36%  Similarity=0.497  Sum_probs=48.9

Q ss_pred             CceeEeecCCCCCcee----cchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCCCCchHHH
Q 008008          446 PKIISLNLTSEGLTGK----ISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~----ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      ..++.|+|++|.+++.    ++..+..+++|+.|+|++|.+++.    ++..+..+++|+.|++++|.+++..+..+.
T Consensus       165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence            3577888888888742    344455667888888888888643    344556678888888888888764444443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=91.98  E-value=0.16  Score=58.93  Aligned_cols=64  Identities=30%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS  518 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  518 (581)
                      ..+..|+|++|.|++ +|..   .+.|+.|++++|+|+ .+|...   ..|+.|+|++|+++ .||..+....
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~  445 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLS  445 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhcc
Confidence            357778888888874 5543   356888899999887 477543   46788899999987 7898876543

>PLN03210 Resistant to P

Probab=91.93  E-value=0.16  Score=62.27  Aligned_cols=64  Identities=28%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .++.|+|+++..-..+|..+.++++|+.|+++++..-+.+|..+ ++++|+.|++++|..-+.+|
T Consensus       658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             cccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            34445554444334455555555555555555544334445433 44555555555543333333

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=91.92  E-value=0.18  Score=58.71  Aligned_cols=61  Identities=36%  Similarity=0.549  Sum_probs=34.2

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .+..|+|++|.|+ .+|..+.  ..|+.|+|++|++. .+|..+.  ..|+.|++++|+++ .+|..+
T Consensus       221 nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l  281 (754)
T PRK15370        221 NIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL  281 (754)
T ss_pred             CCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc
Confidence            3555555555555 3444332  24666666666665 5555443  35777777777776 455443

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=91.61  E-value=0.084  Score=57.44  Aligned_cols=55  Identities=33%  Similarity=0.435  Sum_probs=41.8

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc---CCCcccccC
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY---YKNLSPTYF  581 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~---H~NlV~l~~  581 (581)
                      ++|+|+|++|+++.- ..++.+|||++...   .++..+-...|=++|.+   ||-||+|+|
T Consensus        80 ~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~  141 (604)
T KOG0592|consen   80 ILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYF  141 (604)
T ss_pred             eeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEE
Confidence            899999999999984 56789999999643   22333445566666666   999999975

>PLN03210 Resistant to P

Probab=91.56  E-value=0.2  Score=61.51  Aligned_cols=58  Identities=28%  Similarity=0.393  Sum_probs=44.5

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN  504 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  504 (581)
                      +.++.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|..+ .+++|+.|++++|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c  835 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGC  835 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCC
Confidence            568888999888888899999999999999999876666777654 4555555555544

syringae 6; Provisional

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=91.48  E-value=0.062  Score=56.96  Aligned_cols=54  Identities=26%  Similarity=0.448  Sum_probs=41.4

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeec--cCCCCC-----hHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLS--ASSSQG-----PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~--~~~~~~-----~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++|+|||+.|||+. +...+-||||.-.  ......     .+.-.+|-.+.+.  ||.||+++
T Consensus       470 LLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlY  533 (775)
T KOG1151|consen  470 LLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLY  533 (775)
T ss_pred             HhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeee
Confidence            79999999999998 5667889999753  322222     2456788888888  99999985

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.35  E-value=0.094  Score=56.15  Aligned_cols=64  Identities=39%  Similarity=0.662  Sum_probs=41.4

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchH
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                      .++.|+++.|.+. .+|..+..++.|+.|++++|+++ .+|...+.++.|+.|++++|++. .+|..
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~  204 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE  204 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence            4666677776665 45556667777777777777776 56665556666777777777665 45543

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=91.14  E-value=0.29  Score=54.38  Aligned_cols=47  Identities=34%  Similarity=0.588  Sum_probs=35.3

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY  572 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~  572 (581)
                      +.+||+|.||.|.|+.- ..++.||||.++.... -..+=..||.+|..
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~-f~~Q~~~Ei~iL~~  238 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR-FLRQAQIEIRILEL  238 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccChH-HHHHHHHHHHHHHH
Confidence            34899999999999985 4588999999975421 23445678877776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=91.14  E-value=0.15  Score=60.36  Aligned_cols=60  Identities=30%  Similarity=0.425  Sum_probs=39.6

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  506 (581)
                      +.+..|||++|.--+.+|..++.|-+|++|+|+...++ .+|..+.+|..|.+||+..+..
T Consensus       571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccc
Confidence            55666666665555566667777777777777766666 6666666666666666665543

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=91.01  E-value=0.31  Score=56.01  Aligned_cols=55  Identities=24%  Similarity=0.515  Sum_probs=43.4

Q ss_pred             EeeccCCceeeeeee-ecCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCcccccC
Q 008008          526 RILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTYF  581 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~~  581 (581)
                      ..||+|-.|.||+++ .++++.+|||.+... ....+|-..|.++|..   |||++.+++
T Consensus        25 evig~Gtygkv~k~k~~~~~~~aa~kI~~~~-~d~deEiE~eynil~~~~~hpnv~~fyg   83 (953)
T KOG0587|consen   25 EVIGNGTYGKVYKGRHVKTGQLAAIKIMDPT-EDEEEEIELEYNMLKKYSHHPNVATFYG   83 (953)
T ss_pred             EEEeeccceeEEEEeeeecCceeeeEeecCC-ccccHHHHHHHHHHHhccCCCCcceEEE
Confidence            389999999999998 578889999998654 3345666777777776   999998764

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=90.81  E-value=0.031  Score=55.28  Aligned_cols=54  Identities=24%  Similarity=0.473  Sum_probs=41.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeec-cCCCCC-hHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLS-ASSSQG-PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~-~~~~~~-~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|-||.|++++-. .|..||+|+.- +....| ...-.+|+++|..  |+|++.|+
T Consensus        24 kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nli   82 (376)
T KOG0669|consen   24 KIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI   82 (376)
T ss_pred             hcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHH
Confidence            6899999999999975 46778987653 333334 3456889999999  99998764

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=90.80  E-value=0.19  Score=55.22  Aligned_cols=56  Identities=23%  Similarity=0.372  Sum_probs=41.0

Q ss_pred             EEeeccCCceeeeeeeecC-CceEEEEeeccCC--------CCChHHHHHHHHHHhc-----CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLAD-GSEVAIKMLSASS--------SQGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~--------~~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      +..+|+|+||.|..+.-.. .-.|+||.+.+..        .......-.||++|+.     |+||++++
T Consensus       566 lq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlL  635 (772)
T KOG1152|consen  566 LQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLL  635 (772)
T ss_pred             eeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhh
Confidence            3478999999999988754 4589999885432        1112345578988886     99999986

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=90.52  E-value=0.37  Score=46.26  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=25.4

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeecc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSA  554 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~  554 (581)
                      .||+|+||.||++...+|+.||||+...
T Consensus        22 ~i~~G~~g~Vy~~~~~~g~~vavK~~~~   49 (198)
T cd05144          22 QIGVGKESDVYLALDPDGNPVALKFHRL   49 (198)
T ss_pred             ccccCcceEEEEEEcCCCCEEEEEEEec
Confidence            6899999999999988899999998754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=90.43  E-value=0.22  Score=54.86  Aligned_cols=62  Identities=31%  Similarity=0.411  Sum_probs=44.3

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      ++....|++++|.|+-.-+..|.++++|+.++|..|.|+ .||........|+.|+|.+|.++
T Consensus        77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~  138 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS  138 (873)
T ss_pred             ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc
Confidence            456778888888887555667778888888888888776 67766555555666666666554

>PHA02882 putative serine/threonine kinase; Provisional

Probab=90.37  E-value=0.46  Score=48.45  Aligned_cols=26  Identities=35%  Similarity=0.653  Sum_probs=20.2

Q ss_pred             eeccCCceeeeeeeecCC----ceEEEEee
Q 008008          527 ILGKGGFGTVYHGYLADG----SEVAIKML  552 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g----~~VAVK~l  552 (581)
                      .||+|+||.||+|...+.    ..+|+|..
T Consensus        19 ~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~   48 (294)
T PHA02882         19 LIGCGGFGCVYETQCASDHCINNQAVAKIE   48 (294)
T ss_pred             EEecCCCceEEEEEEcCCcccccceEEEec
Confidence            789999999999997543    45666654

>smart00090 RIO RIO-like kinase

Probab=90.20  E-value=0.38  Score=47.97  Aligned_cols=29  Identities=28%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             eeccCCceeeeeee--ecCCceEEEEeeccC
Q 008008          527 ILGKGGFGTVYHGY--LADGSEVAIKMLSAS  555 (581)
Q Consensus       527 ~iG~g~fg~Vykg~--l~~g~~VAVK~l~~~  555 (581)
                      .||+|++|.||+|.  ..+|..||||.++..
T Consensus        35 ~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~   65 (237)
T smart00090       35 CISTGKEANVYHALDFDGSGKERAVKIYRTG   65 (237)
T ss_pred             eeccCcceeEEEEEecCCCCcEEEEEEEEcC
Confidence            78999999999998  678999999988643

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=89.81  E-value=0.37  Score=52.60  Aligned_cols=42  Identities=29%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHh
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELID  571 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~  571 (581)
                      .+|.|++|.||+|++.+|+.||||..++..   .+.+..++.+|.
T Consensus       124 plasaSigQVh~A~l~~G~~VaVKv~rp~i---~~~i~~Dl~~l~  165 (437)
T TIGR01982       124 PLAAASIAQVHRARLVDGKEVAVKVLRPGI---EKTIAADIALLY  165 (437)
T ss_pred             ceeeeehhheEEEEecCCCEEEEEeeCCCc---HHHHHHHHHHHH
Confidence            589999999999999999999999997542   345666665544

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=89.60  E-value=0.18  Score=51.22  Aligned_cols=56  Identities=23%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCcccccC
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      ..+|.|.||.|...+.. +|...|.|+|+....   ...++-.+|..+|+.  ||.||.|.+
T Consensus        50 ~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~  111 (355)
T KOG0616|consen   50 KTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYG  111 (355)
T ss_pred             eeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEE
Confidence            47899999999988864 577899999975432   223567899999999  999998863

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=89.59  E-value=0.13  Score=51.41  Aligned_cols=54  Identities=22%  Similarity=0.306  Sum_probs=42.9

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      -||-|.||.||...- ++|+.||.|++-...  -...+.+.+|+++|+-  |.|+.+++
T Consensus        60 PIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaL  118 (449)
T KOG0664|consen   60 PIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLL  118 (449)
T ss_pred             cccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            689999999998875 578999999984321  1234778999999998  99998754

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=89.05  E-value=0.18  Score=44.72  Aligned_cols=41  Identities=24%  Similarity=0.416  Sum_probs=31.6

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHH
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI  570 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l  570 (581)
                      -++.++.|.||+|++.+|+.||||..++.-.   +.+..++.+|
T Consensus        18 PlasASiaQVh~a~l~~g~~VaVKV~rP~i~---~~i~~Dl~~l   58 (119)
T PF03109_consen   18 PLASASIAQVHRARLKDGEEVAVKVQRPGIE---EQIEADLRIL   58 (119)
T ss_pred             hhhheehhhheeeeecccchhhhhhcchHHH---HHHHHHHHHH
Confidence            5799999999999999999999999976532   3344444444

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]

Probab=88.37  E-value=0.91  Score=45.66  Aligned_cols=147  Identities=17%  Similarity=0.127  Sum_probs=82.9

Q ss_pred             eeeEEeeecCCCC---CccccCCCCCCCCccCCCCCCCCCeeeecceeeeccCCCCCCchHHHHHhcccCCCCCcceEEE
Q 008008          228 LVLYRRLDVGSTT---TQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFD  304 (581)
Q Consensus       228 l~~~~Rin~G~~~---~~~ir~~~D~~dR~W~~d~~~~~~~~~st~~~i~~~~~~~~~~P~~Vy~TA~~~~~~~~~~~~t  304 (581)
                      ...++-+||||++   ...|+|..|+.--  ++-..+++ ..+.    +   ....+.--...|||+|....   .|  .
T Consensus        58 ~svI~aVncGgdaavd~ygI~f~aD~~~~--VGrasd~G-~~l~----i---~~raeeed~ily~ter~nee---tF--g  122 (355)
T KOG3593|consen   58 SSVIPAVNCGGDAAVDNYGIRFAADPLEG--VGRASDYG-MVLG----I---GCRAEEEDIILYQTERYNEE---TF--G  122 (355)
T ss_pred             hhhhheeccCChhhhcccceEeecccccc--ccccCCcc-ceee----c---cccCChhhhhhhhhcccchh---hh--c
Confidence            4568899999975   3577887776432  11110111 1111    1   11223345678999998643   23  3


Q ss_pred             Ee-cCCCCccEEEEEEeeeccccCCCCeEEEEEEEC-CEEeccc---ccc---cceeeeeEEe-------------eecC
Q 008008          305 FE-IGDPTLQFYVYMHFAELESRQGNQYREFSIELN-GNLWEKS---VVP---EYLQSKTISS-------------TQPA  363 (581)
Q Consensus       305 ~~-~~~~~~~y~vrLhF~ei~~~~~~~~R~F~V~in-g~~~~~~---~~p---~~~~~~~v~~-------------~~~~  363 (581)
                      ++ +.+..++|-+.|-|||..-... |..+|+|-+| +..+.+.   |..   .-...|.++.             +...
T Consensus       123 yd~pik~dgdyalvlkfaevyF~~~-q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~gess~~  201 (355)
T KOG3593|consen  123 YDVPIKEDGDYALVLKFAEVYFKTC-QHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGESSIS  201 (355)
T ss_pred             ccccccCCCceehhhhHHHHHHHhh-hhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEeeeEEe
Confidence            44 3355699999999999874434 4499999999 6555432   110   0001111110             1112


Q ss_pred             CCCeEEEEEeecCCCCcChHHHHHHhhhh
Q 008008          364 RGSKLNFSLCKTSNSTLPPILNAIEIYIL  392 (581)
Q Consensus       364 ~~~~~~isl~~t~~s~lp~~ln~le~~~l  392 (581)
                      .-|.++|.+.+..--+  |.+|+..++.-
T Consensus       202 t~gkl~le~~kg~ldn--pk~~a~aIl~g  228 (355)
T KOG3593|consen  202 TLGKLNLEFLKGVLDN--PKDCARAILVG  228 (355)
T ss_pred             ecceEEEEeecccCCC--hhhhhHHHhhc
Confidence            3367788887765443  88888877764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=88.25  E-value=0.19  Score=55.15  Aligned_cols=66  Identities=27%  Similarity=0.450  Sum_probs=51.4

Q ss_pred             eeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhh
Q 008008          448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVAR  517 (581)
Q Consensus       448 l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~  517 (581)
                      +..|++..|++. .+|++++. -.|..||+|.|+++ .||-++.+|..|++|-|.+|-|. +-|..|+.+
T Consensus       191 lr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~k  256 (722)
T KOG0532|consen  191 LRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEK  256 (722)
T ss_pred             HHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhc
Confidence            445566677765 57788873 45788999999998 89999999999999999999998 446666544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=88.02  E-value=0.25  Score=50.21  Aligned_cols=59  Identities=24%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  506 (581)
                      .+.++.|+||+|.|+ .+-..-..|.+++.|.|+.|.+..  -+.+.++-+|..||+.+|++
T Consensus       328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccch
Confidence            456677777777765 222233455666677777775531  12355666777777777766

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=87.76  E-value=0.09  Score=59.11  Aligned_cols=61  Identities=38%  Similarity=0.475  Sum_probs=46.2

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccc----------------------cccCCCcccccccc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE----------------------FLSQLPLLRVLNLD  502 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~----------------------~l~~l~~L~~L~ls  502 (581)
                      .+.+..|||+.|.++- + ..+..|+.|++|||+.|.|. .+|.                      .+.+|.+|..|||+
T Consensus       186 l~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             HHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchh
Confidence            4668889999999873 2 27888899999999999886 4543                      24456678888888


Q ss_pred             CccCCC
Q 008008          503 GNKLSG  508 (581)
Q Consensus       503 ~N~l~G  508 (581)
                      +|-+.+
T Consensus       263 yNll~~  268 (1096)
T KOG1859|consen  263 YNLLSE  268 (1096)
T ss_pred             Hhhhhc
Confidence            887765

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=87.75  E-value=0.67  Score=49.14  Aligned_cols=54  Identities=31%  Similarity=0.387  Sum_probs=44.0

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+|..|+||.+++.+ +...|+|++....   .......+.|-++|+.  ||-|+.|+
T Consensus        84 ~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLY  143 (459)
T KOG0610|consen   84 RLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLY  143 (459)
T ss_pred             HcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhh
Confidence            68999999999999975 4789999996543   3344567888899998  99999886

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=87.72  E-value=0.08  Score=57.96  Aligned_cols=70  Identities=27%  Similarity=0.473  Sum_probs=56.1

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhcc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQ  519 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  519 (581)
                      +.+..|+.+.|.+. .+|+.++.|.+|+.|++..|++. .+|.+++.| .|..||+++|+++ .||..+.+..+
T Consensus       166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~  235 (722)
T KOG0532|consen  166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRH  235 (722)
T ss_pred             hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhh
Confidence            45677788888876 67888888888888888888887 788888844 5888999999988 89988766543

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=87.70  E-value=0.12  Score=57.46  Aligned_cols=56  Identities=20%  Similarity=0.387  Sum_probs=45.3

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +..+|.|.+|.|||++- ..+...|||.++.......+-.+.||-++..  |+|||.++
T Consensus        20 lqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~   78 (829)
T KOG0576|consen   20 LQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYF   78 (829)
T ss_pred             eeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHH
Confidence            34789999999999994 5678899999876555556667788888887  99999875

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=87.27  E-value=0.77  Score=46.02  Aligned_cols=50  Identities=20%  Similarity=0.151  Sum_probs=34.7

Q ss_pred             eccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc-CCCccccc
Q 008008          528 LGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY-YKNLSPTY  580 (581)
Q Consensus       528 iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~-H~NlV~l~  580 (581)
                      +|+|+||.||++.- .++..+|+|..+....   .+...++..+.+ |+||++++
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~---~~~e~~~~~~~~~h~~iv~~~   75 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNF---NAIEPMVHQLMKDNPNFIKLY   75 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhc---chhhHHHHHHhhcCCCEEEEE
Confidence            69999999999886 4677899999864321   122223333445 99999875

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=86.73  E-value=0.92  Score=50.88  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=35.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEe-eccCCC-------CChHHHHHHHHHHhc--CCCccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKM-LSASSS-------QGPKQFRTEVELIDY--YKNLSP  578 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~-l~~~~~-------~~~~ef~~Ei~~l~~--H~NlV~  578 (581)
                      .||+|+||.||+|.+.+.. +++|+ ......       ...+.+.+|++++.+  |++++.
T Consensus       340 ~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~  400 (535)
T PRK09605        340 LIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPT  400 (535)
T ss_pred             eeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCe
Confidence            6899999999999986554 44443 221111       112568899999999  888764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=86.41  E-value=0.47  Score=50.74  Aligned_cols=65  Identities=40%  Similarity=0.626  Sum_probs=56.2

Q ss_pred             CceeEeecCCCCCceecchhhhccc-CCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLK-SLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~-~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                      ..++.|++.+|.++ .||+....+. +|+.|++++|++. .+|..+..++.|+.|++++|+++ .+|..
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~  181 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKL  181 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhh
Confidence            35888999999987 7888888885 9999999999998 77778899999999999999998 56654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=85.95  E-value=0.17  Score=53.15  Aligned_cols=63  Identities=24%  Similarity=0.317  Sum_probs=37.1

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      +++++.|+|++|.+++.=+..|..+..++.|.|..|++.----..+-.+..|+.|+|.+|+++
T Consensus       273 L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it  335 (498)
T KOG4237|consen  273 LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT  335 (498)
T ss_pred             cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence            577888888888887554555656666666666555553211222334555555555555554

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=84.60  E-value=1.6  Score=38.49  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=35.3

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY  572 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~  572 (581)
                      .+|.|.++.||++...+ ..++||.......  ..++..|++++.+
T Consensus         5 ~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~   47 (155)
T cd05120           5 LLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQL   47 (155)
T ss_pred             ecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHH
Confidence            58999999999999865 7899999865433  5679999999888

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.00  E-value=0.45  Score=28.68  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=17.7

Q ss_pred             ceeEeecCCCCCceecchhhhcc
Q 008008          447 KIISLNLTSEGLTGKISPSLSNL  469 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l  469 (581)
                      +++.|+|++|+++ .||++|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            3788999999999 899887654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=83.73  E-value=0.88  Score=50.98  Aligned_cols=54  Identities=28%  Similarity=0.407  Sum_probs=42.7

Q ss_pred             eeccCCceeeeeee-ecCCceEEEEeeccCCC---CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGY-LADGSEVAIKMLSASSS---QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      -+|+|+-|.|-.|+ .+.|+.+|||.+.....   .......+||-+|+-  |||+++|+
T Consensus        19 TLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~Ly   78 (786)
T KOG0588|consen   19 TLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLY   78 (786)
T ss_pred             cccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeee
Confidence            57999999999888 46799999999864422   224567889988887  99999886

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=83.11  E-value=2.4  Score=42.18  Aligned_cols=31  Identities=45%  Similarity=0.861  Sum_probs=26.4

Q ss_pred             EEeeccCCceeeeeee-ecCCceEEEEeeccC
Q 008008          525 LRILGKGGFGTVYHGY-LADGSEVAIKMLSAS  555 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~  555 (581)
                      ++.||.|+||.+|.|. +.+|..||||.=+..
T Consensus        20 vrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~   51 (341)
T KOG1163|consen   20 VRKIGSGSFGDIYLGISITSGEEVAIKLESSK   51 (341)
T ss_pred             EEeecCCchhheeeeeeccCCceEEEEeeccc
Confidence            3589999999999998 678999999986543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=81.95  E-value=0.83  Score=25.75  Aligned_cols=13  Identities=69%  Similarity=0.887  Sum_probs=5.8

Q ss_pred             CCCeEeCCCCCCC
Q 008008          471 SLENLDLSNNSLT  483 (581)
Q Consensus       471 ~L~~L~Ls~N~l~  483 (581)
                      +|+.|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666554

...

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=81.57  E-value=0.82  Score=48.43  Aligned_cols=52  Identities=23%  Similarity=0.392  Sum_probs=42.6

Q ss_pred             eeccCCceeeeeeeecC----CceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD----GSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|.|+.||++.+..    ...||+|.+...  .......+|+++|..   |.||+.+.
T Consensus        43 kigeGsFssv~~a~~~~~~~~~~~valk~i~~t--s~p~ri~~El~~L~~~gG~~ni~~~~  101 (418)
T KOG1167|consen   43 KIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT--SSPSRILNELEMLYRLGGSDNIIKLN  101 (418)
T ss_pred             cccccchhhhhhhhHhhhccccceEeeeecccc--cCchHHHHHHHHHHHhccchhhhcch
Confidence            79999999999999743    568999998654  334568899999998   99998875

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=81.17  E-value=0.41  Score=51.27  Aligned_cols=56  Identities=27%  Similarity=0.384  Sum_probs=44.6

Q ss_pred             EEeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+++|+||||.||..+.. .|...|.|+|...   ..++...-.+|-++|.+  -+-||+|-
T Consensus       190 ~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVsla  251 (591)
T KOG0986|consen  190 YRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLA  251 (591)
T ss_pred             eEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEe
Confidence            459999999999987764 5788999988543   35677778899999999  77788764

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=80.65  E-value=2  Score=48.55  Aligned_cols=29  Identities=31%  Similarity=0.627  Sum_probs=24.8

Q ss_pred             EeeccCCceeeeeeeecC-----CceEEEEeecc
Q 008008          526 RILGKGGFGTVYHGYLAD-----GSEVAIKMLSA  554 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-----g~~VAVK~l~~  554 (581)
                      ..||+|+||.||+|...+     +..||||+++.
T Consensus       138 ~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~  171 (566)
T PLN03225        138 KKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE  171 (566)
T ss_pred             EEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence            479999999999999854     67999999864

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=80.64  E-value=2.4  Score=47.54  Aligned_cols=29  Identities=31%  Similarity=0.444  Sum_probs=26.6

Q ss_pred             eeccCCceeeeeeeecC-CceEEEEeeccC
Q 008008          527 ILGKGGFGTVYHGYLAD-GSEVAIKMLSAS  555 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~  555 (581)
                      -+|.|++|.||+|++.+ |+.||||++++.
T Consensus       126 PlasaSiaQVh~A~l~~~G~~VAVKV~rP~  155 (537)
T PRK04750        126 PLASASIAQVHFARLKDNGREVVVKVLRPD  155 (537)
T ss_pred             hhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence            68999999999999987 999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	581
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-07
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-07

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPK-QFRTEVELIDY--YKNL 576
           ILG+GGFG VY G LADG+ VA+K L     QG + QF+TEVE+I    ++NL
Sbjct: 45  ILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEMISMAVHRNL 97

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPK-QFRTEVELIDY--YKNL 576
           ILG+GGFG VY G LADG  VA+K L    +QG + QF+TEVE+I    ++NL
Sbjct: 37  ILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-12
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-17
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-07
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	1e-06
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-06
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-04
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-04
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-06
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-04
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	5e-06
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	7e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	8e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-06
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	9e-06
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	9e-06
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	9e-06
3pls_A	298	Macrophage-stimulating protein receptor; protein k	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	1e-05
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-05
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-05
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-05
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-05
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-05
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	3e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-05
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	4e-05
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-05
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	5e-05
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-05
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	6e-05
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	6e-05
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	7e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	8e-05
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	8e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	9e-05
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	9e-05
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-04
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-04
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-04
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-04
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-04
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	2e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	2e-04
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	2e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-04
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	2e-04
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-04
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-04
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-04
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-04
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-04
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-04
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-04
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-04
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-04
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	4e-04
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-04
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	4e-04
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	4e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-04
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-04
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	5e-04
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	5e-04
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	6e-04
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	7e-04
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	8e-04
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-04
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	8e-04
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	9e-04
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.7 bits (226), Expect = 3e-20
 Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 34/148 (22%)

Query: 398 EPTDQDDVNAIMDIK--LSYDLG-KGWQGD-PCSPMYYSWDGLNCSYNGYKPPKIISLNL 453
           E  +  D  A++ IK  L        W     C     +W G+ C  +  +  ++ +L+L
Sbjct: 1   ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN--RTWLGVLCDTDT-QTYRVNNLDL 57

Query: 454 TSEGL---------------------------TGKISPSLSNLKSLENLDLSNNSLTGSI 486
           +   L                            G I P+++ L  L  L +++ +++G+I
Sbjct: 58  SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI 117

Query: 487 PEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           P+FLSQ+  L  L+   N LSG++P S+
Sbjct: 118 PDFLSQIKTLVTLDFSYNALSGTLPPSI 145

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 87.2 bits (217), Expect = 4e-19
 Identities = 26/69 (37%), Positives = 43/69 (62%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++  L +T   ++G I   LS +K+L  LD S N+L+G++P  +S LP L  +  DGN+
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 506 LSGSVPTSL 514
           +SG++P S 
Sbjct: 161 ISGAIPDSY 169

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
               ++L    L   +   +   K+L  LDL NN + G++P+ L+QL  L  LN+  N L
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 507 SGSVPTSLV 515
            G +P    
Sbjct: 281 CGEIPQGGN 289

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.0 bits (201), Expect = 5e-17
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 436 LNCSYN---GYKPPKIISLNLT----SE-GLTGKISPSLSNLKSLENLDLSNNSLTGSIP 487
           +  S N   G  PP   +LNL     S   L G  S    + K+ + + L+ NSL   + 
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 488 EFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           + +     L  L+L  N++ G++P  L
Sbjct: 239 K-VGLSKNLNGLDLRNNRIYGTLPQGL 264

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 2e-14
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
             S+ ++   LTGKI P+ +NL +L  +DLS N L G            + ++L  N L+
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 508 GSVP 511
             + 
Sbjct: 235 FDLG 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSL-ENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P ++ +      ++G I  S  +   L  ++ +S N LTG IP   + L  L  ++L  N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207

Query: 505 KLSGSVPTSL 514
            L G      
Sbjct: 208 MLEGDASVLF 217

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 444 KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
               +  L+L +  + G +   L+ LK L +L++S N+L G IP+    L    V     
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYAN 300

Query: 504 NK-LSGS 509
           NK L GS
Sbjct: 301 NKCLCGS 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 88.4 bits (220), Expect = 2e-18
 Identities = 31/70 (44%), Positives = 38/70 (54%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
              +  L L + G TGKI P+LSN   L +L LS N L+G+IP  L  L  LR L L  N
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452

Query: 505 KLSGSVPTSL 514
            L G +P  L
Sbjct: 453 MLEGEIPQEL 462

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 87.3 bits (217), Expect = 4e-18
 Identities = 25/75 (33%), Positives = 40/75 (53%)

Query: 448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           +  LNL    ++G I   + +L+ L  LDLS+N L G IP+ +S L +L  ++L  N LS
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

Query: 508 GSVPTSLVARSQNGS 522
           G +P      +   +
Sbjct: 718 GPIPEMGQFETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.1 bits (214), Expect = 9e-18
 Identities = 28/69 (40%), Positives = 40/69 (57%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             + +L L    LTG+I   LSN  +L  + LSNN LTG IP+++ +L  L +L L  N 
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 506 LSGSVPTSL 514
            SG++P  L
Sbjct: 526 FSGNIPAEL 534

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 14/92 (15%)

Query: 424 DPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLT---GKISPSLSNLKSLENLDLSNN 480
           +PC+     +DG+ C  +     K+ S++L+S+ L      +S SL +L  LE+L LSN+
Sbjct: 38  NPCT-----FDGVTCR-DD----KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS 87

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT 512
            + GS+  F      L  L+L  N LSG V T
Sbjct: 88  HINGSVSGF-KCSASLTSLDLSRNSLSGPVTT 118

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 85.0 bits (211), Expect = 2e-17
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+++S   +  I P L +  +L++LD+S N L+G     +S    L++LN+  N+
Sbjct: 200 VNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 506 LSGSVPTSL 514
             G +P   
Sbjct: 259 FVGPIPPLP 267

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 2e-17
 Identities = 27/69 (39%), Positives = 40/69 (57%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            +++SL+L+   L+G I  SL +L  L +L L  N L G IP+ L  +  L  L LD N 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 506 LSGSVPTSL 514
           L+G +P+ L
Sbjct: 478 LTGEIPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 1e-16
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+++   L+G  S ++S    L+ L++S+N   G IP     L  L+ L+L  NK
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENK 280

Query: 506 LSGSVPTSLVARSQNGSLLLRIL 528
            +G +P  L          L  L
Sbjct: 281 FTGEIPDFLSGACDT----LTGL 299

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 1e-16
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
                 N+TS    G  SP+  N  S+  LD+S N L+G IP+ +  +P L +LNL  N 
Sbjct: 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667

Query: 506 LSGSVPTSL 514
           +SGS+P  +
Sbjct: 668 ISGSIPDEV 676

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 2e-16
 Identities = 26/69 (37%), Positives = 36/69 (52%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            K+  L L    L G+I   L  +K+LE L L  N LTG IP  LS    L  ++L  N+
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 506 LSGSVPTSL 514
           L+G +P  +
Sbjct: 502 LTGEIPKWI 510

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.1 bits (201), Expect = 3e-16
 Identities = 21/68 (30%), Positives = 41/68 (60%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
            ++ L+++   L+G I   + ++  L  L+L +N ++GSIP+ +  L  L +L+L  NKL
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692

Query: 507 SGSVPTSL 514
            G +P ++
Sbjct: 693 DGRIPQAM 700

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 5e-16
 Identities = 23/68 (33%), Positives = 41/68 (60%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
            +  ++L++  LTG+I   +  L++L  L LSNNS +G+IP  L     L  L+L+ N  
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 507 SGSVPTSL 514
           +G++P ++
Sbjct: 551 NGTIPAAM 558

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 1e-15
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)

Query: 442 GYKPPKIISLNLTSEGLTGKISPSLSN--LKSLENLDLSNNSLTGSIPEFLSQLPLLRVL 499
                 +++L+L+S   +G I P+L      +L+ L L NN  TG IP  LS    L  L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 500 NLDGNKLSGSVPTSL 514
           +L  N LSG++P+SL
Sbjct: 424 HLSFNYLSGTIPSSL 438

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 78.4 bits (194), Expect = 2e-15
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLS-NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             +  L+L     TG+I   LS    +L  LDLS N   G++P F     LL  L L  N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328

Query: 505 KLSGSVPTS 513
             SG +P  
Sbjct: 329 NFSGELPMD 337

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 77.6 bits (192), Expect = 5e-15
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 446 PKIISLNLTSEGLTGKISP--SLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNLD 502
             + SL+L+   L+G ++   SL +   L+ L++S+N+L          +L  L VL+L 
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159

Query: 503 GNKLSGSVPTSLVARSQNGSL 523
            N +SG+     V     G L
Sbjct: 160 ANSISGANVVGWVLSDGCGEL 180

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.1 bits (188), Expect = 1e-14
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPL-LRVLNLDG 503
             + SL L+S   +G++   +L  ++ L+ LDLS N  +G +PE L+ L   L  L+L  
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

Query: 504 NKLSGSVPTSL 514
           N  SG +  +L
Sbjct: 378 NNFSGPILPNL 388

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.7 bits (187), Expect = 2e-14
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS-QLPLLRVLNLDGN 504
            ++  LN++S    G I P    LKSL+ L L+ N  TG IP+FLS     L  L+L GN
Sbjct: 247 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 505 KLSGSVPTSL 514
              G+VP   
Sbjct: 305 HFYGAVPPFF 314

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 70.7 bits (174), Expect = 6e-13
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 446 PKIISLNLTSEGLTGKIS-PSLSNLKSLENLDLSNNSLTGSIPE---FLSQLPLLRVLNL 501
             +  LN++S  L           L SLE LDLS NS++G+             L+ L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185

Query: 502 DGNKLSGSVP 511
            GNK+SG V 
Sbjct: 186 SGNKISGDVD 195

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.6 bits (166), Expect = 5e-12
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L L++   +G I   L + +SL  LDL+ N   G+IP  + +        +  N 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANF 569

Query: 506 LSGSVPTSLVARSQNGSLLL 525
           ++G     +           
Sbjct: 570 IAGKRYVYIKNDGMKKECHG 589

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 21/45 (46%), Positives = 31/45 (68%)

Query: 526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI 570
            ++G G FG VY G L DG++VA+K  +  SSQG ++F TE+E +
Sbjct: 45  FLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETL 89

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 27/45 (60%), Positives = 34/45 (75%), Gaps = 1/45 (2%)

Query: 527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPK-QFRTEVELI 570
           ILG+GGFG VY G LADG+ VA+K L    +QG + QF+TEVE+I
Sbjct: 37  ILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMI 81

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 75.5 bits (186), Expect = 2e-14
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 437 NCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
            C    +       P    +L+L+   L    S S  +   L+ LDLS   +        
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
             L  L  L L GN +      + 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAF 96

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+L+   L      + ++L SL+ L++S+N+           L  L+VL+   N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 506 LSGSVPTSL 514
           +  S    L
Sbjct: 530 IMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 13/69 (18%), Positives = 25/69 (36%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P++  L+L+   +      +  +L  L  L L+ N +        S L  L+ L      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 506 LSGSVPTSL 514
           L+      +
Sbjct: 112 LASLENFPI 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
            ++  L+     L      S   +L++L  LD+S+     +     + L  L VL + GN
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 505 KLSGSVPTSLVARSQNGSLLLRIL 528
               +    +    +N    L  L
Sbjct: 456 SFQENFLPDIFTELRN----LTFL 475

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             +  L +          P   + L++L  LDLS   L    P   + L  L+VLN+  N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 505 KLSGSVPTSL 514
                     
Sbjct: 505 NFFSLDTFPY 514

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             + +L LT   +      + S L SL+ L     +L       +  L  L+ LN+  N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 506 LSGSVPTSLVARSQNGSLLLRIL 528
           +         +   N    L  L
Sbjct: 136 IQSFKLPEYFSNLTN----LEHL 154

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLP-LLRVLNLDGN 504
             +  LN++        +     L SL+ LD S N +  S  + L   P  L  LNL  N
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 505 KLSGS 509
             + +
Sbjct: 554 DFACT 558

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 446 PKIISLNLTSEGLT--GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
           P +  L+L+  GL+  G  S S     SL+ LDLS N +      FL  L  L  L+   
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQH 405

Query: 504 NKLSGSVPTSLVARSQNGSLLLRIL 528
           + L      S+    +N    L  L
Sbjct: 406 SNLKQMSEFSVFLSLRN----LIYL 426

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 436 LNCSYNGYKPPKIISL-NLTSEGLTGKISPSLSNLKSLENLDLSNNSLT--GSIPEFLSQ 492
           +NC +  +   K+ SL  LT     G  + S  +L SLE LDLS N L+  G   +    
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 493 LPLLRVLNLDGNKLSG 508
              L+ L+L  N +  
Sbjct: 372 TTSLKYLDLSFNGVIT 387

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 446 PKIISLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRV----LN 500
             +  LN+    +   K+    SNL +LE+LDLS+N +       L  L  + +    L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 501 LDGNKLSGSVPTSL 514
           L  N ++   P + 
Sbjct: 184 LSLNPMNFIQPGAF 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLEN----LDLSNNSLTGSIPEFLSQLPLLRVLNL 501
             +  L+L+S  +       L  L  +      LDLS N +    P    ++ L   L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL-HKLTL 207

Query: 502 DGNKLSGSVPTSLVARSQNGSLL 524
             N  S +V  + +       + 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVH 230

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
           P   +SL+L+   +   I P       L  L L NN  + ++ +  +  L  L V  L  
Sbjct: 176 PLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234

Query: 504 NKLSGSVPTSLVARSQNGSL 523
            +           +S    L
Sbjct: 235 GEFRNEGNLEKFDKSALEGL 254

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 3/88 (3%)

Query: 448 IISLNLTS-EGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           I    L   +     I    + L ++ +  L + ++        S     + L L   K 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 507 SGSVPTSLVARSQNGSLLLRILGKGGFG 534
                  L +  +      +        
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNL-KSLENLDLSNNSLTGSIP--EFLSQLPLLRVLNLD 502
             +  L+ +   +       L +   SL  L+L+ N    +     FL  +   R L ++
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577

Query: 503 GNKLSGSVPTSL 514
             ++  + P+  
Sbjct: 578 VERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 2/63 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             + S +L S  +        S     ++L+L N          L  L  L   +  G  
Sbjct: 282 TNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339

Query: 506 LSG 508
              
Sbjct: 340 AFS 342

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 7/74 (9%)

Query: 447 KIISLNLTSEGLTGKIS-PSLSNLKSLENLDLSNNSLT------GSIPEFLSQLPLLRVL 499
           ++  L L      G +     S L+ L NL +    L         I +  + L  +   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 500 NLDGNKLSGSVPTS 513
           +L    +      S
Sbjct: 288 SLVSVTIERVKDFS 301

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 8/106 (7%)

Query: 413 LSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSL 472
                G  W  +    M+ +  G++ + NG    ++  L+L   G +G++  ++  L  L
Sbjct: 52  FGTQPGANWNFNKELDMWGAQPGVSLNSNG----RVTGLSLEGFGASGRVPDAIGQLTEL 107

Query: 473 ENLDLSNNSLTG----SIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           E L L ++          P+ +S                 +     
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYD 153

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 7/140 (5%)

Query: 397 QEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSE 456
              TD   V   +     Y             ++ + +G N S  G+      + N   E
Sbjct: 10  NALTDDAIVPIKLSRTAEYIK----DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKE 65

Query: 457 --GLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                 +   SL++   +  L L     +G +P+ + QL  L VL L  +    +     
Sbjct: 66  LDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG 125

Query: 515 VAR-SQNGSLLLRILGKGGF 533
               S N S   +   +  +
Sbjct: 126 PKGISANMSDEQKQKMRMHY 145

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.9 bits (169), Expect = 2e-12
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 459 TGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS 518
           T  +  SL  +K L  L+   N L G +P F      L  LNL  N+++  +P +    +
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQITE-IPANFCGFT 376

Query: 519 QN 520
           + 
Sbjct: 377 EQ 378

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 436 LNCSYN---GYKPPKIISL-NLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS 491
                +        +     N               NLK L ++++ N      +P FL 
Sbjct: 211 FYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 492 QLPLLRVLNLDGNKLSG 508
            LP ++++N+  N+   
Sbjct: 271 ALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            K+  L      L GK+ P+  +   L +L+L+ N +T     F      +  L+   NK
Sbjct: 330 KKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 506 LSGSVPTSLVARS 518
           L   +P    A+S
Sbjct: 389 LK-YIPNIFDAKS 400

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
            +        +    ++   SL  L + +N +     +       + VL++  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISID 603

Query: 511 PTSLVARSQNGSLLL 525
            + +    + G  +L
Sbjct: 604 LSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.4 bits (160), Expect = 3e-11
 Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPL 495
           ++ SYN         +          + P+     ++ +++LSNN ++    E  S    
Sbjct: 407 IDFSYN--------EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 496 LRVLNLDGNKLSG 508
           L  +NL GN L+ 
Sbjct: 459 LSSINLMGNMLTE 471

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 9/68 (13%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
            +I   + S+     I  S         +   +N++T  + + + +L  LR   +  +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPF 218

Query: 507 SGSVPTSL 514
                   
Sbjct: 219 VAENICEA 226

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSL-TGSIPEFLSQLP 494
           +N + N     + IS     +             + ++ + +  N+L T  +   L ++ 
Sbjct: 278 INVACN-----RGISGEQLKDDWQ--ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK 330

Query: 495 LLRVLNLDGNKLSGSVPT 512
            L +L    N+L G +P 
Sbjct: 331 KLGMLECLYNQLEGKLPA 348

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLE------NLDLSNNSLTGSIPEFLSQLPLLRVL 499
           P ++ ++L+    +        N  +L+        D   N      PE ++  P L  L
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571

Query: 500 NLDGNKLSGSVPTSL 514
            +  N +   V   +
Sbjct: 572 QIGSNDIR-KVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-------SIPEFLSQLPLLRVLNLD 502
           S+NL++  ++       S    L +++L  N LT           E      LL  ++L 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 503 GNKLSGSVPTSL 514
            NKL+  +    
Sbjct: 497 FNKLT-KLSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 9e-09
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 446 PKIISLNLTSEGLTGKISPSL--SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVL---- 499
             + S++L    LT  +S     + L  L  +DLS NS +   P        L+      
Sbjct: 488 YLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRN 545

Query: 500 --NLDGNKLSGSVPTSL 514
             +  GN+     P  +
Sbjct: 546 QRDAQGNRTLREWPEGI 562

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 20/87 (22%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-------------------SIP 487
           K   +   S  +T  +S ++  L  L    + N+                       +  
Sbjct: 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242

Query: 488 EFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                L  L  + +        +PT L
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 7/60 (11%)

Query: 462 ISPSLSNLKSLENLDLSNNSLTG-------SIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                 ++  +  +D S N +          +     +   +  +NL  N++S       
Sbjct: 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELF 453

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 5/67 (7%), Positives = 15/67 (22%), Gaps = 3/67 (4%)

Query: 450 SLNLTSEGLTGKISPSLSNLK--SLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
                                   L    ++++    SI +          +    N ++
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 508 GSVPTSL 514
             V  ++
Sbjct: 197 -FVSKAV 202

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P +  L + S  +   ++  +    ++  LD+ +N        ++       +  L  +K
Sbjct: 566 PSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDK 622

Query: 506 LS 507
             
Sbjct: 623 TQ 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 7e-14
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
            +CS+          P  I  LNLT   L    + + +    L +LD+  N+++   PE 
Sbjct: 9   ADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL 68

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSL 514
             +LP+L+VLNL  N+LS     + 
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTF 93

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 16/69 (23%), Positives = 25/69 (36%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  LNL S G          +L  L+ +DL  N+L        +    L+ LNL  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 506 LSGSVPTSL 514
           ++       
Sbjct: 596 ITSVEKKVF 604

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
              +  L+L S  +    +      K+L  LDLS+N L+ +      QL  L+ L L  N
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 505 KLSGSVPTSLVARSQNGSL 523
           K+   + +  +    N SL
Sbjct: 156 KIQA-LKSEELDIFANSSL 173

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 16/69 (23%), Positives = 27/69 (39%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P +  LNL    L+     + +   +L  L L +NS+         +   L  L+L  N 
Sbjct: 73  PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 506 LSGSVPTSL 514
           LS +   + 
Sbjct: 133 LSSTKLGTQ 141

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 12/69 (17%), Positives = 26/69 (37%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++ SL++    ++         L  L+ L+L +N L+    +  +    L  L+L  N 
Sbjct: 49  SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108

Query: 506 LSGSVPTSL 514
           +        
Sbjct: 109 IQKIKNNPF 117

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 7e-11
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             +  L+L    +  +++      L+++  + LS N          + +P L+ L L   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 505 KLSG 508
            L  
Sbjct: 465 ALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.9 bits (156), Expect = 8e-11
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLK--SLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
             +  L L++  +    S  L      SL+ L+LS+N +    P     +  L  L L+ 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204

Query: 504 NKLSGSVPTSLVARSQNGSL 523
            +L  S+   L     N S+
Sbjct: 205 VQLGPSLTEKLCLELANTSI 224

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPL--LRVLNLDG 503
             +I+L+L+  GL+     +   L++L+ L LSNN +     E L       L+ L L  
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180

Query: 504 NKLSGSVPTSL 514
           N++    P   
Sbjct: 181 NQIKEFSPGCF 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNLDGNKLSG 508
            LNLT   ++   S + S L  LE LDL  N +   +  +    L  +  + L  NK   
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 509 SVPTSL 514
               S 
Sbjct: 445 LTRNSF 450

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLK--SLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
             I +L+L++  L+   + +   LK  +L  LDLS N+L     +  + LP L    L+ 
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 504 NKLSGSVPTSL 514
           N +      SL
Sbjct: 282 NNIQHLFSHSL 292

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG--SIPEFLSQLPLLRVLNLDG 503
             I  + L+          S + + SL+ L L   +L    S P     L  L +L+L  
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 504 NKLSGSVPTSL 514
           N ++      L
Sbjct: 490 NNIANINDDML 500

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 18/80 (22%), Positives = 32/80 (40%)

Query: 448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
               +++   L      S   LK LE+L++ +N + G      + L  L+ L+L  +  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 508 GSVPTSLVARSQNGSLLLRI 527
               T+    S   S L  +
Sbjct: 367 LRTLTNETFVSLAHSPLHIL 386

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 14/63 (22%), Positives = 22/63 (34%)

Query: 452 NLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP 511
            L      G     L  L  L  L+L +N       E    L  L++++L  N L+    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 512 TSL 514
           +  
Sbjct: 578 SVF 580

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 18/70 (25%), Positives = 28/70 (40%)

Query: 442 GYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNL 501
           G K   +  L+L+   L    + S + L  LE   L  N++       L  L  +R LNL
Sbjct: 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 502 DGNKLSGSVP 511
             +    S+ 
Sbjct: 304 KRSFTKQSIS 313

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 446 PKIISLNLTSEGLTG--KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
           P +  L L    L            L++L  LDLSNN++     + L  L  L +L+L  
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 504 NKLS 507
           N L+
Sbjct: 514 NNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 436 LNCSYNG--YKPPKIIS-------LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSI 486
           LN   NG    P ++         ++L    L    +   +N  SL++L+L  N +T   
Sbjct: 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600

Query: 487 PE-FLSQLPLLRVLNLDGNKLSGSVPT 512
            + F      L  L++  N    +  +
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%)

Query: 444 KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS---QLPLLRVLN 500
               +  L L+S  +          +  L  L L+N  L  S+ E L        +R L+
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228

Query: 501 LDGNKLSGSVPTSL 514
           L  ++LS +  T+ 
Sbjct: 229 LSNSQLSTTSNTTF 242

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT--------GSIPEFLSQLPLLR 497
             +  L+L++  +       L  L+ LE LDL +N+L         G    FL  L  L 
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 498 VLNLDGNKLSGSVPTSL 514
           +LNL+ N          
Sbjct: 540 ILNLESNGFDEIPVEVF 556

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 447 KIISLNLTSEGLTGKISPSLSNL--KSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           K +SL+ +   L    + +  +L    L  L+L+ N ++    +  S L  L VL+L  N
Sbjct: 356 KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 505 KLSGSVPTS 513
           ++   +   
Sbjct: 416 EIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLS---NLKSLENLDLSNNSLTGSIPEFLSQLPL--LRVLN 500
            ++  L L +  L   ++  L       S+ NL LSN+ L+ +       L    L +L+
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 501 LDGNKLSGSVPTSL 514
           L  N L+     S 
Sbjct: 255 LSYNNLNVVGNDSF 268

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN---------SLTGSIPEFLSQLPLL 496
           P++    L    +    S SL  L ++  L+L  +         SL          L  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 497 RVLNLDGNKLSGSVPTSL 514
             LN++ N + G      
Sbjct: 332 EHLNMEDNDIPGIKSNMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN--SLTGSIPEFLSQLPL--LRVLNL 501
             +  LN+    + G  S   + L +L+ L LSN+  SL     E    L    L +LNL
Sbjct: 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388

Query: 502 DGNKLSGSVPTSL 514
             NK+S     + 
Sbjct: 389 TKNKISKIESDAF 401

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 517 RSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKMLSA----SSSQGPKQFRTEVELI 570
             +  S+    +G+GGFG VY GY+ + + VA+K L+A    ++ +  +QF  E++++
Sbjct: 28  DERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVM 84

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 6/85 (7%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
            NC   G        P     L  +   L    + + S L +L  LDL+   +     + 
Sbjct: 17  YNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSL 514
                 L  L L  N L     T+L
Sbjct: 77  FQSQHRLDTLVLTANPLIFMAETAL 101

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 15/69 (21%), Positives = 26/69 (37%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++ +L LT+  L      +LS  K+L++L      ++      L     L  L L  N 
Sbjct: 81  HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 506 LSGSVPTSL 514
           +S       
Sbjct: 141 ISSIKLPKG 149

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P++  L+L    L  K + S   NL  L+ L+LS++ L  S  +    LP L+ LNL GN
Sbjct: 400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459

Query: 505 KLSGSVPTSLVARSQNGSL 523
                      +    G L
Sbjct: 460 HFPKGNIQKTNSLQTLGRL 478

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 446 PKIISLNLTS---EGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLD 502
           P +  LNL          + + SL  L  LE L LS   L+       + L ++  ++L 
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 503 GNKLSGSVPTSL 514
            N+L+ S   +L
Sbjct: 509 HNRLTSSSIEAL 520

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 15/70 (21%), Positives = 27/70 (38%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P  +  L     G++      L N K+LE+L L +N ++            L+VL+   N
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163

Query: 505 KLSGSVPTSL 514
            +       +
Sbjct: 164 AIHYLSKEDM 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 14/69 (20%), Positives = 23/69 (33%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+LT   +      +  +   L+ L L+ N L       LS    L+ L      
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 506 LSGSVPTSL 514
           +S      L
Sbjct: 117 ISSIDFIPL 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+LT+  L+ ++   L  L +L+ L LS N          S  P L  L++ GN 
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 506 LSGSVPTS 513
               + T 
Sbjct: 337 KRLELGTG 344

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.1 bits (141), Expect = 5e-09
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++  L L+   L+     + ++LK + ++DLS+N LT S  E LS L  +  LNL  N 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534

Query: 506 LSGSVPTSL 514
           +S  +P+ L
Sbjct: 535 ISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 1e-08
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 441 NGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLN 500
            G     + S+NL         S +      L+ LDL+   L+  +P  L  L  L+ L 
Sbjct: 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLV 307

Query: 501 LDGNKLSGSVPTSL 514
           L  NK       S 
Sbjct: 308 LSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSI-PEFLSQLPLLRVLNLDGN 504
             +  L L++         S SN  SL +L +  N+    +    L  L  LR L+L  +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 505 KLSGSVPTS 513
            +  S   +
Sbjct: 361 DIETSDCCN 369

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSI---PEFLSQLPLLRVLNL 501
              +  LNL+   L          L +L++L+L  N            L  L  L +L L
Sbjct: 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

Query: 502 DGNKLSG 508
               LS 
Sbjct: 484 SFCDLSS 490

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 446 PKIISLNLTSEGLT--GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
             +  L+L+ + +      +  L NL  L++L+LS N       E   + P L +L+L  
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 504 NKLSGSVPTSL 514
            +L      S 
Sbjct: 410 TRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 3/82 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLD--G 503
             + SL L S  ++    P     + L+ LD  NN++     E +S L     L+L+  G
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 504 NKLSGSVPTSLVARSQNGSLLL 525
           N ++  +       +   SL  
Sbjct: 189 NDIA-GIEPGAFDSAVFQSLNF 209

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.9 bits (125), Expect = 4e-07
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  ++L+   LT     +LS+LK +  L+L++N ++  +P  L  L   R +NL  N 
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 506 LSGS 509
           L  +
Sbjct: 559 LDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 8e-06
 Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
            ++  E ++  +   L  + S+E+++L  +               L+ L+L    LS  +
Sbjct: 236 EDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL 293

Query: 511 PTSL 514
           P+ L
Sbjct: 294 PSGL 297

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 4/69 (5%)

Query: 450 SLNLTSEGLTGKISPSLSN--LKSLENLDLSNNSLTGSIPEFLSQLPL--LRVLNLDGNK 505
           SLN         I   L N  ++SL      +       P     L    +  +NL  + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 506 LSGSVPTSL 514
                  + 
Sbjct: 266 FFNISSNTF 274

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 6/85 (7%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
             C            P    +++L+   L    S S SN   L+ LDLS   +     + 
Sbjct: 16  YQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA 75

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSL 514
              L  L  L L GN +    P S 
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSF 100

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGN 504
             + +L      L    S  +  L +L+ L++++N +    +P + S L  L  ++L  N
Sbjct: 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 505 KLSGSVPTSLVARSQNGSLLLRI 527
            +       L    +N  + L +
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSL 186

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 15/70 (21%), Positives = 27/70 (38%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
              +  L+L+   L          L  L+ L++S+N+L        +QL  L  L+   N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 505 KLSGSVPTSL 514
           ++  S     
Sbjct: 532 RIETSKGILQ 541

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 18/63 (28%), Positives = 25/63 (39%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             + +L LT   +      S S L SLENL      L       + QL  L+ LN+  N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 506 LSG 508
           +  
Sbjct: 140 IHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 6e-10
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
            ++  L+     L      S   +L+ L  LD+S  +           L  L  L + GN
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 505 KLSGSVPTSLVARSQNGSLLLRIL 528
               +  +++ A + N    L  L
Sbjct: 459 SFKDNTLSNVFANTTN----LTFL 478

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             + +L +           +  +N  +L  LDLS   L          L  L++LN+  N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 505 KLSGSVPTSL 514
            L     +  
Sbjct: 508 NLLFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 15/69 (21%), Positives = 25/69 (36%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++  L+L+   +      +   L  L NL L+ N +    P   S L  L  L     K
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115

Query: 506 LSGSVPTSL 514
           L+      +
Sbjct: 116 LASLESFPI 124

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 16/62 (25%), Positives = 24/62 (38%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++  LN++   L    S   + L SL  LD S N +  S          L   NL  N 
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 506 LS 507
           ++
Sbjct: 557 VA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 7/95 (7%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLK--SLENLDLSNNSLTGSIPEFLSQL 493
            + S+     P +  L+L+   L+     S S+L   SL +LDLS N     +      L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGL 398

Query: 494 PLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRIL 528
             L+ L+   + L      S     +     L  L
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEK----LLYL 429

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 446 PKIISLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQL----PLLRVLN 500
             +  LN+    +   K+    SNL +L ++DLS N +       L  L     +   L+
Sbjct: 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 501 LDGNKLS 507
           +  N + 
Sbjct: 188 MSLNPID 194

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 425 PCSPMYYSWDGLNCSYN------GYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLS 478
              P ++ W  L+              P + SL LT    +  IS     L SL  LDLS
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLS 358

Query: 479 NNSLTGSIPEFLSQLPL--LRVLNLDGNKLS 507
            N+L+ S     S L    LR L+L  N   
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 444 KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLD 502
            P   +SL+++   +   I         L  L L  N  + +I +  L  L  L V  L 
Sbjct: 179 NPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237

Query: 503 GNKLSGSVPTSLVARSQNGSL 523
             +        +   S    L
Sbjct: 238 LGEFKDERNLEIFEPSIMEGL 258

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           I    LT              L ++  + L+  S+   + +   +    + L++   +L 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDV-PKHFKWQSLSIIRCQLK 320

Query: 508 GSVPTSL 514
                 L
Sbjct: 321 QFPTLDL 327

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 5/83 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLK----SLENLDLSNNSLTGSIPEFLSQLPLLRVLNL 501
             ++ ++L+   +       L  L+       +LD+S N +   I +   Q   L  L L
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTL 211

Query: 502 DGNKLSGSVPTSLVARSQNGSLL 524
            GN  S ++  + +       + 
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVH 234

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 18/59 (30%), Positives = 26/59 (44%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG 508
             N            S SNLK L +++L N      +P+FL  LP L+ LN+  N+   
Sbjct: 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGIS 529

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 414 SYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLE 473
           +      W  +    M+    G++   NG    ++  L+L   G  G++  ++  L  L+
Sbjct: 295 NTIHSLNWNFNKELDMWGDQPGVDLDNNG----RVTGLSLAGFGAKGRVPDAIGQLTELK 350

Query: 474 NLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLL 524
            L    +S T S   F  +     +     +++        +   Q  +L 
Sbjct: 351 VLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG---------SIPEFLSQLPLL 496
             +  + L +     ++   L +L  L++L+++ N              + +     P +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

Query: 497 RVLNLDGNKLSGSVPTSL 514
           ++  +  N L    P S 
Sbjct: 551 QIFYMGYNNLE-EFPASA 567

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPL 495
               +           +     +  +    ++   SL  L + +N +   + E L   P 
Sbjct: 781 FGIRHQ---------RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQ 828

Query: 496 LRVLNLDGNKLSGSVPTSLVARSQNGSLLLR 526
           L +L++  N       TS+    + G  +L 
Sbjct: 829 LYILDIADNPNISIDVTSVCPYIEAGMYVLL 859

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.7 bits (147), Expect = 9e-10
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 8/89 (8%)

Query: 433 WDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT-------GS 485
              ++CS + YK     ++ L+   +    +   +    +  + LSNN +T         
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 486 IPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                    LL  ++L  NKL+ S+    
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDF 747

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.3 bits (141), Expect = 5e-09
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 452 NLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            + SEG     S       +   + LS N +     E  +    +  + L  N ++
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 16/97 (16%), Positives = 31/97 (31%)

Query: 432 SWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS 491
           +W   + + N        + N   +    +    L N   +  L L+     G +P+ + 
Sbjct: 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIG 344

Query: 492 QLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRIL 528
           QL  L+VL+   +  + S                R  
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKH 381

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 8e-09
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 4/76 (5%)

Query: 446 PKIISLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           PKI    +    L     S SL  +  L  LD  +N +   +  F      L  L LD N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAF-GTNVKLTDLKLDYN 605

Query: 505 KLSGSVPTSLVARSQN 520
           ++   +P    A +  
Sbjct: 606 QIE-EIPEDFCAFTDQ 620

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLE------NLDLSNNSLTGSIPEFLSQLPLLRVL 499
           P + +++++    +        N   L+        D   N +    P  ++  P L  L
Sbjct: 753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 500 NLDGNKLSGSVPTSL 514
            +  N +   V   L
Sbjct: 812 QIGSNDIR-KVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 446 PKIISLNLTSEGLTGKISPSL--SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNL-- 501
             + +++L    LT  +S     + L  L N+D+S N  + S P        L+   +  
Sbjct: 728 YLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRH 785

Query: 502 ----DGNKLSGSVPTSL 514
               +GN++    PT +
Sbjct: 786 QRDAEGNRILRQWPTGI 802

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS 518
            +      L +L L  N +     +F +    +  L    NKL   +P    A+S
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 20/84 (23%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-------------------SIPEFL 490
            +   +  +T  IS ++  L  L+ +  +N+  T                    +     
Sbjct: 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
           S L  L  + L        +P  L
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 10/94 (10%), Positives = 24/94 (25%), Gaps = 15/94 (15%)

Query: 436 LNCSYN---------GYKPPKIISLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTGS 485
           L   YN              ++  L  +   L       +  ++  + ++D S N +   
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

Query: 486 IPEFLSQLPL-----LRVLNLDGNKLSGSVPTSL 514
                  +          + L  N++        
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 7/76 (9%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG------SIPEFLSQLPLLRV 498
             ++   +L  + +    +P +  +K    + L +  +         I + + +L  L++
Sbjct: 395 DQRLNLSDLLQDAINR--NPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQI 452

Query: 499 LNLDGNKLSGSVPTSL 514
           +    +  +       
Sbjct: 453 IYFANSPFTYDNIAVD 468

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 444 KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
             P  ++L L S  L  +       L  L+++ +    L   +P+ + Q   L  L L  
Sbjct: 79  TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLAR 136

Query: 504 NKLSGSVPTSL 514
           N L  ++P S+
Sbjct: 137 NPLR-ALPASI 146

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS 509
           SL L   G+   +  S++NL++L++L + N+ L+ ++   +  LP L  L+L G     +
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN 244

Query: 510 VPTSL 514
            P   
Sbjct: 245 YPPIF 249

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 436 LNCSYNGYK--PPKI------ISLNLTSEGLTGKISPSLSNLKSLENLDLSN-NSLTGSI 486
           L    +      P I        L+L          P       L+ L L + ++L  ++
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TL 269

Query: 487 PEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLR 526
           P  + +L  L  L+L G      +P+ +     N  +L+ 
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 6e-07
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN---KLSGSVPTSLVA 516
             +  L  LE LDL        +P  ++QLP   ++ +  +   +L    P +  A
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 1e-06
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 19/96 (19%)

Query: 436 LNCSYNGYK--PPKI------ISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP 487
           +     G    P  +       +L L    L   +  S+++L  L  L +        +P
Sbjct: 109 MTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167

Query: 488 EFLSQLPL---------LRVLNLDGNKLSGSVPTSL 514
           E L+             L+ L L+   +  S+P S+
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 6/83 (7%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTG--KISPSLSNLKS--LENLDLSNNSLTGSIPEFLS 491
            N  ++ ++     +  + +         +  L +        L+L +  L    P+   
Sbjct: 43  RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF 101

Query: 492 QLPLLRVLNLDGNKLSGSVPTSL 514
           +L  L+ + +D   L   +P ++
Sbjct: 102 RLSHLQHMTIDAAGLM-ELPDTM 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.8 bits (149), Expect = 4e-10
 Identities = 77/475 (16%), Positives = 138/475 (29%), Gaps = 146/475 (30%)

Query: 27  VCIEKQTVLASDATSSGKSEKFVGHKHARRKLDDIGGDISIDCG--VPAGFMYLDEKTQL 84
           V   +  +    A    +  K V        +D + G      G    A  + L  K Q 
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVL-------IDGVLG-----SGKTWVALDVCLSYKVQC 178

Query: 85  SYKSDEEF-IRTGVNKNISSKFMSANLQNTYATVR-SFPEGNRNCYSLRPPEGKAKTYLT 142
                + F +    N N     +   LQ     +  ++   + +  +++      +  L 
Sbjct: 179 KM-DFKIFWLNLK-NCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 143 RASFMYGDY-------DD-EDK--LPEFDL---------YIGVNRWDSIKFDNASHVVIK 183
           R       Y        + ++      F+L         +  V   D +     +H+ + 
Sbjct: 236 RL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAATTTHISLD 292

Query: 184 EIIHSALMDE-INVCLLNTG-----------KGTPF-IS--ALELRHFHNATYRTQSGAL 228
               +   DE  ++ L                  P  +S  A  +R          +   
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TWDN--- 346

Query: 229 VLYRRLDVGSTTTQIIRFKD--------DHYDRIWVPYPGFPGSASI------------- 267
             ++ ++    TT I    +          +DR+ V    FP SA I             
Sbjct: 347 --WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTILLSLIWFDVI 400

Query: 268 --NTSFIID-----SLVDSQ-----YRLPSAVMKTAVKPMNV-----------NDSLDFD 304
             +   +++     SLV+ Q       +PS  ++  VK  N            N    FD
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 305 FE-IGDPTLQFYVYMHFAE--LESRQGNQYREFS-IELNGNLWEKSVVPEYLQSKTISST 360
            + +  P L  Y Y H            +   F  + L+   +        L+ K    +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-F--------LEQKIRHDS 511

Query: 361 QP--ARGSKLNFSLCKTSNSTLPPILNAIEIY---ILTDTLQEPTDQDDVNAIMD 410
               A GS LN              L  ++ Y   I      +P  +  VNAI+D
Sbjct: 512 TAWNASGSILN-------------TLQQLKFYKPYI---CDNDPKYERLVNAILD 550

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 76/522 (14%), Positives = 156/522 (29%), Gaps = 161/522 (30%)

Query: 98  NKNISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKL 157
            + +  KF+   L+  Y  + S           R P    + Y+ +   +Y D     K 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMS-----PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 158 PEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCL---LNTGKGTPFISALELR 214
                   V+R             +++ +   L    NV +   L +GK     + +   
Sbjct: 130 N-------VSRLQPYL-------KLRQALLE-LRPAKNVLIDGVLGSGK-----TWV--- 166

Query: 215 HFHNATYRTQSGALVLYRRLDVGSTTTQIIRFKDDHYDRI-WVPYPGFPGSASINTSFII 273
                       AL +     V          +     +I W+         ++      
Sbjct: 167 ------------ALDVCLSYKV----------QCKMDFKIFWL---------NLKNCNSP 195

Query: 274 DSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYRE 333
           +++++   +L   +        + + ++          L+         L+S+    Y  
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------LKSKP---YEN 245

Query: 334 FSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCK----TSNSTLPPILNAIEI 389
             + L  N+                       +  N S CK    T    +   L+A   
Sbjct: 246 CLLVLL-NVQNAKAW-----------------NAFNLS-CKILLTTRFKQVTDFLSAATT 286

Query: 390 YILT-DTLQEPTDQDDVNAI----MDIKLSYDLGKGWQGDPCSPMYYSW------DGLNC 438
             ++ D        D+V ++    +D +   DL +  +    +P   S       DGL  
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPR--EVLTTNPRRLSIIAESIRDGLA- 342

Query: 439 SYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLEN----LDLS---NNSLTGSIPEFLS 491
           +++ +K       ++  + LT  I  SL+ L+  E       LS    ++    IP    
Sbjct: 343 TWDNWK-------HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPT--- 389

Query: 492 QLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGGFGTVYHGYLADGSEVAIKM 551
                 +L+L    +  S    +V +    SL+ +   K    ++   YL          
Sbjct: 390 -----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTISIPSIYL---------- 433

Query: 552 LSASSSQGPKQFRTEVELIDYYK--------NLSPT----YF 581
                 +   ++     ++D+Y         +L P     YF
Sbjct: 434 --ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 58/377 (15%), Positives = 107/377 (28%), Gaps = 117/377 (31%)

Query: 277 VDSQYR-LPSAVMKTAVKPMNVNDSLDF----------DFEIGDPTLQFYVYMHFAELES 325
              QY+ + S      V   +  D  D           D  I            F  L S
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 326 RQGNQYREFSIE-LNGN---LWEKSVVPEYLQSKTISSTQPARGSKLNFSLCK----TSN 377
           +Q    ++F  E L  N   L         ++++     QP+  +++ +   +      N
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSP------IKTEQR---QPSMMTRM-YIEQRDRLYNDN 123

Query: 378 STLPPI-LNAIEIYI-LTDTLQEPTDQDDVNAI--MDIKLSYDLGKGW-----------Q 422
                  ++ ++ Y+ L   L E     +V  I  +        GK W           Q
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGV-----LGSGKTWVALDVCLSYKVQ 177

Query: 423 GDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNS 481
                 ++  W  LN        P+ +   L    L  +I P+  S      N+ L  +S
Sbjct: 178 CKMDFKIF--W--LNLKN--CNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 482 LTGSIPEFLSQLPLLRVL-NLDG--------------------------NKLSGSVPTSL 514
           +   +   L   P    L  L                            + LS +  T +
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 515 VARSQNGSL----LLRILGKGGFGTVYHGYL-----------ADGSEVAIKMLSASSSQG 559
                + +L    +  +L K         YL              +   + +++ S   G
Sbjct: 290 SLDHHSMTLTPDEVKSLLLK---------YLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 560 PKQFRTEVELIDYYKNL 576
              +       D +K++
Sbjct: 341 LATW-------DNWKHV 350

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 436 LNCSYNG-YKPPKIISL-NLTSEGLTG-KIS--PSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L    N       +  L  L    +   +IS    L+NL  L +L L+NN L     E +
Sbjct: 248 LEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 491 SQLPLLRVLNLDGNKLSGSVP 511
             L  L  L L  N ++   P
Sbjct: 308 GGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++ SL L +  L  +    +  L +L  L LS N +T   P  L+ L  +   +     
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 506 LS 507
           + 
Sbjct: 345 IK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 5e-08
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L L  + ++      L+NL  + +L+L  N    S    LS +  L  L +  +K
Sbjct: 110 TNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESK 166

Query: 506 LSGSVP 511
           +    P
Sbjct: 167 VKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++  L + +  ++  I+  + +L  L+ L++ +N ++      L+ L  L  L L+ N+
Sbjct: 243 SQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQ 298

Query: 506 LSGSVPTSL 514
           L       +
Sbjct: 299 LGNEDMEVI 307

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             I  L +  E +   I   +  L +LE L+L+ N +T   P  LS L  L  L +  NK
Sbjct: 44  ESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK 99

Query: 506 LS 507
           ++
Sbjct: 100 IT 101

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 8/82 (9%)

Query: 436 LNCSYNGY--KPPKIISL-NLTSEGLTG-KIS--PSLSNLKSLENLDLSNNSLTGSIPEF 489
           LN   N        + ++  L    +T  K+     ++NL  L +L L+ N +    P  
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-- 194

Query: 490 LSQLPLLRVLNLDGNKLSGSVP 511
           L+ L  L       N+++   P
Sbjct: 195 LASLTSLHYFTAYVNQITDITP 216

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +         +T      ++N+  L +L + NN +T   P  L+ L  L  L +  N+
Sbjct: 199 TSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254

Query: 506 LSG 508
           +S 
Sbjct: 255 ISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            + I   L    +T     +   L+S+  L ++   +  SI   +  L  L  LNL+GN+
Sbjct: 22  AEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQ 77

Query: 506 LSGSVP 511
           ++   P
Sbjct: 78  ITDISP 83

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           +L      +  +I P  ++L       L   S+T  +     +L  +  L + G K++
Sbjct: 4   TLATLPAPIN-QIFP-DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            K+ +L+L+S  L   + P   +   +  + L NN L   I + L     L   +L GN 
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 506 LSGSVPTSLVARSQNGSLL 524
                     +++Q    +
Sbjct: 249 FHCGTLRDFFSKNQRVQTV 267

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 58.3 bits (141), Expect = 4e-09
 Identities = 15/58 (25%), Positives = 25/58 (43%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG 508
             +T   L   ++    +  +++ LDLS N L+      L+    L +LNL  N L  
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE 72

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+L+   L+   +  L+    LE L+LS+N L     +    L  LR L+L+ N 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNY 91

Query: 506 LS 507
           + 
Sbjct: 92  VQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.1 bits (130), Expect = 7e-08
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                   L+ LDLS+N L   +         +  ++L  NKL   +  +L
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSG 508
           ++ L +  +T            ++ LDL  N +   +  E  +    L  LNL  N +  
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 509 SVPTSL 514
            V   +
Sbjct: 183 DVKGQV 188

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P I +L+  +  ++ ++S S    +  +N+ L+NN +T            ++ L+L  N+
Sbjct: 99  PSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 506 LSGSVPTSLVARSQN 520
           +       L A S  
Sbjct: 156 IDTVNFAELAASSDT 170

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 468 NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           N    +   ++++SL  ++         ++ L+L GN LS      L
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL 54

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 11/81 (13%), Positives = 22/81 (27%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS 509
           +L       T ++     N      +D         I +   +      L      L   
Sbjct: 316 ALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQ 375

Query: 510 VPTSLVARSQNGSLLLRILGK 530
           V     A ++    L + +G+
Sbjct: 376 VSNGRRAHAELDGTLQQAVGQ 396

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            K+ +L+L+S  L   + P   +   +  + L NN L   I + L     L   +L GN 
Sbjct: 191 AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 506 LSGSVPTSLVARSQNGSLL 524
                     +++Q    +
Sbjct: 249 FHCGTLRDFFSKNQRVQTV 267

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
             +T   L   ++    +  +++ LDLS N L+      L+    L +LNL  N L 
Sbjct: 15  EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+L+   L+   +  L+    LE L+LS+N L     +    L  LR L+L+ N 
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETLDL-ESLSTLRTLDLNNNY 91

Query: 506 LS 507
           + 
Sbjct: 92  VQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                   L+ LDLS+N L   +         +  ++L  NKL   +  +L
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLS 507
           ++ L +  +T            ++ LDL  N +   +  E  +    L  LNL  N + 
Sbjct: 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 436 LNCSYNG----YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS 491
           L+ + N        P I +L+  +  ++ ++S S    +  +N+ L+NN +T        
Sbjct: 85  LDLNNNYVQELLVGPSIETLHAANNNIS-RVSCS--RGQGKKNIYLANNKITMLRDLDEG 141

Query: 492 QLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRIL 528
               ++ L+L  N++       L A S      L  L
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDT----LEHL 174

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query: 468 NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           N    +   ++++SL  ++         ++ L+L GN LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS 47

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.5 bits (146), Expect = 9e-10
 Identities = 37/235 (15%), Positives = 66/235 (28%), Gaps = 10/235 (4%)

Query: 275 SLVDSQYRLPSAVMKTAVKPMNVNDSLD-FDFEIGDPTLQFYVYMHFAELESRQGNQYRE 333
           +L+      P +V        N    +   D        Q   +            +   
Sbjct: 273 TLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECV 332

Query: 334 FSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCK-TSNSTLPPILNAIEIYIL 392
              +        S   E L    +S  +         S  +               I ++
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 392

Query: 393 TDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLN 452
                   +++ +     +K    +   +  D  S        L   Y   +      L+
Sbjct: 393 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVR-----VLH 447

Query: 453 LTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           L  + LT  +   L  L  + +LDLS+N L  ++P  L+ L  L VL    N L 
Sbjct: 448 LAHKDLT-VL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+L+   L   + P+L+ L+ LE L  S+N+L  ++   ++ LP L+ L L  N+
Sbjct: 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNR 519

Query: 506 LS 507
           L 
Sbjct: 520 LQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 436 LNCSYNGYK--PPKIISL-NLTSEGLTG-KIS--PSLSNLKSLENLDLSNNSLTG-SIPE 488
           L+ S+N  +  PP + +L  L     +   +     ++NL  L+ L L NN L   +  +
Sbjct: 468 LDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ 527

Query: 489 FLSQLPLLRVLNLDGNKLS 507
            L   P L +LNL GN L 
Sbjct: 528 PLVSCPRLVLLNLQGNSLC 546

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 436 LNCSYNG---YKP----PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L  +      Y P      +  L +  + +T    P+LS L SL  LD+S+++   SI  
Sbjct: 71  LTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 489 FLSQLPLLRVLNLDGNKL 506
            ++ LP +  ++L  N  
Sbjct: 131 KINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 436 LNCSYNGYKP-------PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           +  +               I  L + +   T   +P +S L +LE L +    +T     
Sbjct: 49  ITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYNP-ISGLSNLERLRIMGKDVTSDKIP 106

Query: 489 FLSQLPLLRVLNLDGNKLSGSVPTSL 514
            LS L  L +L++  +    S+ T +
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKI 132

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+++       I   ++ L  + ++DLS N     I   L  LP L+ LN+  + 
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDG 170

Query: 506 LS 507
           + 
Sbjct: 171 VH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           PK+ S++L+  G    I P L  L  L++L++  + +       +   P L  L      
Sbjct: 136 PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH-DY-RGIEDFPKLNQLYAFSQT 192

Query: 506 LSG 508
           + G
Sbjct: 193 IGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 6/43 (13%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           + + + SL  + L+N ++T  +   +     ++ L ++    +
Sbjct: 39  TEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHAT 79

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 437 NCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
            C    +       P    +L+L+   L    S S  +   L+ LDLS   +        
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 491 SQLPLLRVLNLDGNKLS 507
             L  L  L L GN + 
Sbjct: 73  QSLSHLSTLILTGNPIQ 89

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             +  L +          P   + L++L  LDLS   L    P   + L  L+VLN+  N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 505 KLSGSVPTSLVARSQNGSLLLRIL 528
           +L  SVP  +  R  +    L+ +
Sbjct: 505 QLK-SVPDGIFDRLTS----LQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 436 LNCSYNG--------YKPPKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSI 486
           L+ S+NG            ++  L+     L      S   +L++L  LD+S+     + 
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 487 PEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
               + L  L VL + GN    +    +
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 444 KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT-GSIPEFLSQLPLLRVLNLD 502
               +  L      L    +  + +LK+L+ L++++N +    +PE+ S L  L  L+L 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 503 GNKLSGSVPTSL 514
            NK+     T L
Sbjct: 158 SNKIQSIYCTDL 169

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P++  L+L+   +      +  +L  L  L L+ N +        S L  L+ L      
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 506 LS 507
           L+
Sbjct: 112 LA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             + +L LT   +      + S L SL+ L     +L       +  L  L+ LN+  N 
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

Query: 506 LS 507
           + 
Sbjct: 136 IQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 425 PCSPMYYSWDGLNCSYNGYKPPKIISL-NLTSEGLTG---KISPSLSNLKSLENLDLSNN 480
                 + W  L      +     + L +L     T      + S  +L SLE LDLS N
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 481 SLT--GSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
            L+  G   +       L+ L+L  N +  ++ ++ 
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF 392

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLT--GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQL 493
              +++    P +  L+L+  GL+  G  S S     SL+ LDLS N +  ++      L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGL 395

Query: 494 PLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRIL 528
             L  L+   + L      S+    +N    L  L
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRN----LIYL 426

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS 509
           + ++L SL+ L++++N L         +L  L+ + L  N    S
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)

Query: 446 PKIISLNLTSEGLT-GKISPSLSNLKSLENLDLSNNSLTGSIPE---FLSQLPLLRV-LN 500
             +  LN+    +   K+    SNL +LE+LDLS+N +          L Q+PLL + L+
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 501 LDGNKLS 507
           L  N ++
Sbjct: 184 LSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 9e-04
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLEN----LDLSNNSLTGSIPEFLSQLPLLRVLNL 501
             +  L+L+S  +       L  L  +      LDLS N +   I     +   L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 502 DGNKLSGSVPTSLVARSQNGSLL 524
             N  S +V  + +       + 
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVH 230

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGNKLSGS 509
            N   E  +G  S   +    L+ LDLS+NSL  +           L  LNL    L   
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 510 VPTSL 514
           VP  L
Sbjct: 268 VPKGL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P ++ SLNL+  GL  ++   L     L  LDLS N L    P    +LP +  L+L GN
Sbjct: 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGN 306

Query: 505 KLSGS 509
               S
Sbjct: 307 PFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 4e-07
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 442 GYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS----QLPLLR 497
            +  P +  L++            +    +L  LDLS+N   G      +    + P L+
Sbjct: 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

Query: 498 VLNLDGNKLS 507
           VL L    + 
Sbjct: 205 VLALRNAGME 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 449 ISLNLTSEGLTGKISPSLSNLKSLENLDLSNN---SLTGSIPEFLSQLPLLRVLNLDGNK 505
           +S N          +       +L+ L L N    + +G      +    L+ L+L  N 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 506 LSGSVPTSLVARSQNGSLLLRIL 528
           L  +               L  L
Sbjct: 240 LRDAAGAPSCDWPSQ----LNSL 258

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 4e-04
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 447 KIISLNLTSEGLTGKISPSLS---NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
            +  L + +  +  +I         +  L+ L L N  +TG+ P  L +     +  L+ 
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 504 NKLSGSVPTSLVARSQNGSLL-LRIL 528
             +S +   + +A  Q      L++L
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVL 154

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNL--KSLENLDLSNNSLTGSIPEFLSQL-----PLLRV 498
             +  L L +  +TG   P L       L  L+L N S       +L++L     P L+V
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKV 153

Query: 499 LNLDGNKLSGSVPTSLVARSQN 520
           L++       +     V     
Sbjct: 154 LSIAQAHSL-NFSCEQVRVFPA 174

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 436 LNCSYN-----GYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L  S N        P ++  L ++   LT  +    S L SL    +  N LT  +PE L
Sbjct: 226 LIVSGNRLTSLPVLPSELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESL 280

Query: 491 SQLPLLRVLNLDGNKLS 507
             L     +NL+GN LS
Sbjct: 281 IHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS 509
            LN+   GLT  +   L     +  L + +N+LT S+P    +   LR L + GN+L+ S
Sbjct: 44  VLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT-S 95

Query: 510 VPTSL 514
           +P   
Sbjct: 96  LPVLP 100

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 14/84 (16%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L+ S N        P ++  L   +  LT  +    S LK L    +S N LT S+P   
Sbjct: 186 LSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT-SLPVLP 240

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
           S+   L+ L + GN+L+ S+P   
Sbjct: 241 SE---LKELMVSGNRLT-SLPMLP 260

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 14/84 (16%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L    N        PP++ +L ++   LT  +      L  L         L        
Sbjct: 66  LVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-- 122

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
                L  L + GN+L+ S+P   
Sbjct: 123 -----LCKLWIFGNQLT-SLPVLP 140

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 14/84 (16%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L+   N        P  +  L +    LT  +      L   + L +S+N L  S+P   
Sbjct: 106 LSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLPPGL---QELSVSDNQLA-SLPALP 160

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
           S+   L  L    N+L+ S+P   
Sbjct: 161 SE---LCKLWAYNNQLT-SLPMLP 180

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.7 bits (108), Expect = 3e-05
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 11/84 (13%)

Query: 436 LNCSYNG-----YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L+ S N        P ++  L   +  LT  +    S L+ L    +S+N L  S+P   
Sbjct: 146 LSVSDNQLASLPALPSELCKLWAYNNQLT-SLPMLPSGLQEL---SVSDNQLA-SLPTLP 200

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
           S+L  L   N     L    P+ L
Sbjct: 201 SELYKLWAYNNRLTSLPAL-PSGL 223

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 436 LNCSYNG-----YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L  S N        P  ++SL++    LT ++  SL +L S   ++L  N L+    + L
Sbjct: 246 LMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304

Query: 491 SQLPLLRVLN 500
            ++      +
Sbjct: 305 REITSAPGYS 314

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            + + L+     +  K+  +LS LK+ ++L LS N++   I   LS +  LR+L+L  N 
Sbjct: 25  AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81

Query: 506 LS 507
           + 
Sbjct: 82  IK 83

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 436 LNCSYNGYK--------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP 487
           L+   N  K           +  L ++   +   +S  +  L +L  L +SNN +T +  
Sbjct: 75  LSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLSG-IEKLVNLRVLYMSNNKIT-NWG 131

Query: 488 EF--LSQLPLLRVLNLDGNKLS 507
           E   L+ L  L  L L GN L 
Sbjct: 132 EIDKLAALDKLEDLLLAGNPLY 153

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 14/73 (19%), Positives = 28/73 (38%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L++    L   +S   S L+ ++ + + N+ +      F   L  L  L+L  N +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 511 PTSLVARSQNGSL 523
             +   +    SL
Sbjct: 351 LKNSACKGAWPSL 363

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 15/79 (18%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPL 495
           L  S N      + S+  T E         L  LK+L +LD+S N+    +P+       
Sbjct: 366 LVLSQN-----HLRSMQKTGE--------ILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 496 LRVLNLDGNKLSGSVPTSL 514
           +R LNL    +   V T +
Sbjct: 412 MRFLNLSSTGIR-VVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
            +     +          + SL+L+   +T      L    +L+ L L ++ +     + 
Sbjct: 10  CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 490 LSQLPLLRVLNLDGNKLS 507
              L  L  L+L  N LS
Sbjct: 70  FYSLGSLEHLDLSDNHLS 87

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSI---PEFLSQLPLLRVLNLD 502
            K+  + + +  +         +LKSLE LDLS N +              P L+ L L 
Sbjct: 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLS 369

Query: 503 GNKLS 507
            N L 
Sbjct: 370 QNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 13/95 (13%)

Query: 436 LNCSYNG------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           LN S  G        P  +  L++++  L    S  L  L+ L    +S N L  ++P+ 
Sbjct: 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLD-SFSLFLPRLQEL---YISRNKLK-TLPDA 469

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLL 524
            S  P+L V+ +  N+L  SVP  +  R  +   +
Sbjct: 470 -SLFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKI 502

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             +  L L S  +   I   +  +L SLE+LDLS+N L+     +   L  L+ LNL GN
Sbjct: 50  ANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 505 KLS 507
              
Sbjct: 109 PYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 15/80 (18%)

Query: 436 LNCSYNG--------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP 487
           L+ S N           P K+  LNL+S G+   +   +   ++LE LD+SNN+L  S  
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFS 447

Query: 488 EFLSQLPLLRVLNLDGNKLS 507
            FL +L   + L +  NKL 
Sbjct: 448 LFLPRL---QELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             + +L + +     +I     + L SL  L++   SL     + L  +  +  L L  +
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182

Query: 505 KLS 507
           + +
Sbjct: 183 ESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 446 PKIISLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
             +  LNL         ++    NL +L+ L + N      I     + L  L  L +  
Sbjct: 98  SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157

Query: 504 NKLS 507
             L 
Sbjct: 158 LSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             + SL+++       +  S    + +  L+LS+  +   +   +     L VL++  N 
Sbjct: 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN 442

Query: 506 LSGSVPTSL 514
           L  S    L
Sbjct: 443 LD-SFSLFL 450

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 451 LNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSG 508
           L+L+   L+  +S S    L SL+ L+L  N      +      L  L+ L +   +   
Sbjct: 79  LDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

Query: 509 SVP 511
            + 
Sbjct: 138 EIR 140

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPL 495
            +C+ NG     +   N +   +  ++        ++  L +    L   +    S L  
Sbjct: 259 DDCTLNG-----LGDFNPSESDVVSELG--KVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311

Query: 496 LRVLNLDGNKLS 507
           ++ + ++ +K+ 
Sbjct: 312 VKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG 508
           L + +  L    S SL +++ + +L L  +     +  F   L  +R L L    L+ 
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           + C    +       P +   L+L    +        ++   LE L+L+ N ++   P  
Sbjct: 16  VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSL 514
            + L  LR L L  N+L   +P  +
Sbjct: 76  FNNLFNLRTLGLRSNRLK-LIPLGV 99

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNLDG 503
             + SL +    L   IS  + S L SLE L L   +LT SIP E LS L  L VL L  
Sbjct: 128 YNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRH 185

Query: 504 NKLS 507
             ++
Sbjct: 186 LNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
            ++  + L    L   + P +   L  L  L++S N LT ++ E     +  L  L LD 
Sbjct: 272 LRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDS 329

Query: 504 NKLS 507
           N L+
Sbjct: 330 NPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 450 SLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFL-SQLPLLRVLNLDGNKLS 507
           +L L S  L   I     + L +L  LD+S N +   + +++   L  L+ L +  N L 
Sbjct: 84  TLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 450 SLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLS 507
           SL++T   LT  +   ++ +L  L  L+LS N ++ +I    L +L  L+ + L G +L+
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +I L L    +      S   L  L+ L++S+     ++         L  L++    
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 506 LSGSVP 511
           L+ +VP
Sbjct: 236 LT-AVP 240

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             +  L L    LT  I   +LS+L  L  L L + ++         +L  L+VL +   
Sbjct: 152 NSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 505 KLSGSVPTSL 514
               ++  + 
Sbjct: 211 PYLDTMTPNC 220

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 436 LNCSYNGYKPPKIISL-NLTSEGLTG-KIS--PSLSNLKSLENLDLSNNSLTGSIPEFLS 491
           L+          + +L  L    ++  K+S    L+ L +LE+L  +NN ++   P  L 
Sbjct: 161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LG 218

Query: 492 QLPLLRVLNLDGNKLSG 508
            L  L  L+L+GN+L  
Sbjct: 219 ILTNLDELSLNGNQLKD 235

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 436 LNCSYNG-------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L     G            +  +N ++  LT  I+P L NL  L ++ ++NN +    P 
Sbjct: 51  LQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP- 107

Query: 489 FLSQLPLLRVLNLDGNKLSGSVP 511
            L+ L  L  L L  N+++   P
Sbjct: 108 -LANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 9e-08
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 436 LNCSYNG-------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L+ + N            K+  L L +  ++      L+ L +L NL+L+ N L    P 
Sbjct: 248 LDLANNQISNLAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP- 304

Query: 489 FLSQLPLLRVLNLDGNKLSGSVP 511
            +S L  L  L L  N +S   P
Sbjct: 305 -ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L L    ++  ISP +S+L  L+ L   NN ++      L+ L  +  L+   N+
Sbjct: 309 KNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQ 364

Query: 506 LSGSVP 511
           +S   P
Sbjct: 365 ISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+L    L   I   L++L +L +LDL+NN ++   P  LS L  L  L L  N+
Sbjct: 221 TNLDELSLNGNQLK-DIGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276

Query: 506 LSGSVP 511
           +S   P
Sbjct: 277 ISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           + S  +T +    +I    + L       L   ++T ++    + L  +  L  D   + 
Sbjct: 3   LGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L L+S  ++     +LS L SL+ L   N  +T   P  L+ L  L  L++  NK
Sbjct: 134 TNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLERLDISSNK 188

Query: 506 LSG 508
           +S 
Sbjct: 189 VSD 191

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L L +  +T      L NL +L  L+LS+N+++      LS L  L+ L+  GN+
Sbjct: 112 TNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQ 166

Query: 506 LSGSVP 511
           ++   P
Sbjct: 167 VTDLKP 172

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 436 LNCSYNG-------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L    N             I  L+     ++  ++P L+NL  +  L L++ + T +   
Sbjct: 336 LFFYNNKVSDVSSLANLTNINWLSAGHNQISD-LTP-LANLTRITQLGLNDQAWTNAPVN 393

Query: 489 FLSQLPLLR-VLNLDGNKLSGSVPTSLVARSQNGSL 523
           + + + +   V N+ G  ++   P ++   S  GS 
Sbjct: 394 YKANVSIPNTVKNVTGALIA---PATI---SDGGSY 423

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           SLS L +L  L L NN L+  +P  L  L LL+V+ L  N ++
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 11/87 (12%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE 488
           + CS  G K       P    L+L +  ++ ++       L+ L  L L NN ++  I E
Sbjct: 38  VQCSDLGLKAVPKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHE 95

Query: 489 F-LSQLPLLRVLNLDGNKLSGSVPTSL 514
              S L  L+ L +  N L   +P +L
Sbjct: 96  KAFSPLRKLQKLYISKNHLV-EIPPNL 121

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 445 PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLD 502
           P  +  L+L    +   I    L     L  L L +N +   I    LS LP LR L+LD
Sbjct: 192 PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLD 249

Query: 503 GNKLSGSVPTSL 514
            NKLS  VP  L
Sbjct: 250 NNKLS-RVPAGL 260

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-------FLSQLPLLRV 498
           P +  L+L +  L+ ++   L +LK L+ + L  N++T  +         F  +      
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNG 298

Query: 499 LNLDGNKLS 507
           ++L  N + 
Sbjct: 299 ISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             + +L L +  ++ KI   + S L+ L+ L +S N L   IP  L     L  L +  N
Sbjct: 78  QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDN 133

Query: 505 KLS 507
           ++ 
Sbjct: 134 RIR 136

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 445 PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLT-GSIPEFLSQLPLLRVLNLD 502
           P  ++ L +    +  K+     S L+++  +++  N L              L  L + 
Sbjct: 122 PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 503 GNKLSGSVPTSL 514
             KL+  +P  L
Sbjct: 181 EAKLT-GIPKDL 191

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 524 LLRILGKGGFGTVYHG-YLADGSEVAIKMLSASSSQGP-------KQFRTEVEL 569
             + +GKGGFG V+ G  + D S VAIK L    S+G        ++F+ EV +
Sbjct: 23  YEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFI 76

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           PP +  L +++  L     P L N   L+ +D+ NNSL   +P+       L  +    N
Sbjct: 130 PPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNN 183

Query: 505 KLS 507
           +L 
Sbjct: 184 QLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 24/100 (24%)

Query: 436 LNCSYNG-----YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG------ 484
           L  +  G       PP + SL  +   LT ++     +LKSL   + +  +L+       
Sbjct: 76  LELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLE 134

Query: 485 ----------SIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                      +PE       L+++++D N L   +P   
Sbjct: 135 YLGVSNNQLEKLPEL-QNSSFLKIIDVDNNSLK-KLPDLP 172

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 6e-07
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 14/84 (16%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L+ S N +      PP +  LN +S  +   +     +L+ L   ++SNN L   +P   
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASSNEIR-SLCDLPPSLEEL---NVSNNKLI-ELPALP 336

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
            +   L  L    N L+  VP   
Sbjct: 337 PR---LERLIASFNHLA-EVPELP 356

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           ++   N  K     PP +  +   +  L  ++ P L NL  L  +   NNSL   +P+  
Sbjct: 158 IDVDNNSLKKLPDLPPSLEFIAAGNNQLE-EL-PELQNLPFLTAIYADNNSLK-KLPDLP 214

Query: 491 SQLPLLRVLNLDGNKLS 507
                L  +    N L 
Sbjct: 215 LS---LESIVAGNNILE 228

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 5/51 (9%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           P L NL  L  +   NN L  ++P+       L  LN+  N L+  +P   
Sbjct: 231 PELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELP 276

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 462 ISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQNG 521
           I+P   +   L+     +++LT  +P     +          ++   + P     + +  
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 522 SLLLRIL 528
              LR  
Sbjct: 62  VSRLRDC 68

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 19/88 (21%)

Query: 445 PPKIISLNLTSEGLTG-----KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPL---- 495
            P+ +S     E L       ++     N+KS      + +    + P    +       
Sbjct: 4   NPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVS 63

Query: 496 ---------LRVLNLDGNKLSGSVPTSL 514
                       L L+   LS S+P   
Sbjct: 64  RLRDCLDRQAHELELNNLGLS-SLPELP 90

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 28/101 (27%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNL-----------------KSLE 473
           +    N  K     PP + +LN+    LT  +     +L                  +L 
Sbjct: 242 IYADNNLLKTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNLY 300

Query: 474 NLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
            L+ S+N +  S+ +       L  LN+  NKL   +P   
Sbjct: 301 YLNASSNEIR-SLCDLPPS---LEELNVSNNKLI-ELPALP 336

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 436 LNCSYNG-YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLP 494
           L+  YN   + P I   ++    +   ++      ++L+ L +  N L    P+    + 
Sbjct: 362 LHVEYNPLREFPDIPE-SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESV- 418

Query: 495 LLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRIL 528
               L ++  ++           +   +  L   
Sbjct: 419 --EDLRMNSERV-----VDPYEFAHETTDKLEDD 445

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 27/100 (27%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           LN S N        PP++  L  +   L  ++     NLK L    +  N L    P+  
Sbjct: 322 LNVSNNKLIELPALPPRLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIP 376

Query: 491 SQLPL----------------LRVLNLDGNKLSGSVPTSL 514
             +                  L+ L+++ N L    P   
Sbjct: 377 ESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIP 415

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE 488
           + CS  G +      PP    L+L +  +T +I      NLK+L  L L NN ++   P 
Sbjct: 36  VQCSDLGLEKVPKDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG 94

Query: 489 FLSQLPLLRVLNLDGNKLSGSVPTSL 514
             + L  L  L L  N+L   +P  +
Sbjct: 95  AFAPLVKLERLYLSKNQLK-ELPEKM 119

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 445 PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLD 502
           PP +  L+L    +T K+   SL  L +L  L LS NS++ ++    L+  P LR L+L+
Sbjct: 191 PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLN 248

Query: 503 GNKLSGSVPTSL 514
            NKL   VP  L
Sbjct: 249 NNKLV-KVPGGL 259

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 9/69 (13%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-------FLSQLPLLRV 498
           P +  L+L +  L  K+   L++ K ++ + L NN+++ +I         + ++      
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSG 297

Query: 499 LNLDGNKLS 507
           ++L  N + 
Sbjct: 298 VSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 445 PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSI--PEFLSQLPLLRVLNL 501
           P  +  L +    +T K+     + L  +  ++L  N L  S         +  L  + +
Sbjct: 120 PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178

Query: 502 DGNKLSGSVPTSL 514
               ++ ++P  L
Sbjct: 179 ADTNIT-TIPQGL 190

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
             + +L L +  ++ KISP + + L  LE L LS N L   +PE +     L+ L +  N
Sbjct: 76  KNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHEN 131

Query: 505 KLS 507
           +++
Sbjct: 132 EIT 134

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 2/43 (4%)

Query: 465 SLSNLKSLENLDLSNNSLT-GSIPEFL-SQLPLLRVLNLDGNK 505
             +   S   + L +N +    I       + +   + L   K
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++  L+  + GLT  I+ +L  L  L+ L+LS+N ++G +     + P L  LNL GNK
Sbjct: 42  EELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 506 LS 507
           + 
Sbjct: 100 IK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 8/77 (10%)

Query: 436 LNCSYNG-------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIP 487
           L+    G        K  K+  L L+   ++G +        +L +L+LS N +   S  
Sbjct: 47  LSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106

Query: 488 EFLSQLPLLRVLNLDGN 504
           E L +L  L+ L+L   
Sbjct: 107 EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 460 GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG 508
           GK+       + LE L   N  LT SI   L +L  L+ L L  N++SG
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVE 568
           LL ++G+G +G VY G L D   VA+K+ S ++ Q    F  E  
Sbjct: 17  LLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQ---NFINEKN 57

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 28/177 (15%)

Query: 229 VLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPGSASINTSFIIDSLVDSQYRLPSAVM 288
           V++  ++ G  +        D +   +   P   G     + + +   +         + 
Sbjct: 6   VIWA-VNAGGESHV------DVHGIHYRKDPLE-GRVGRASDYGMKLPILRSNPEDQVLY 57

Query: 289 KTAVKPMNVNDSLDFDFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKS-- 346
           +T        DS  +D  I     ++ + + FAE+   Q  Q + F + +NG+   K   
Sbjct: 58  QTER---YNEDSFGYDIPI-KEEGEYVLVLKFAEVYFAQSQQ-KVFDVRVNGHTVVKDLD 112

Query: 347 -------------VVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPILNAIEIY 390
                        ++P  ++   +S            S+         P + A+ I 
Sbjct: 113 IFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALFIM 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 15/87 (17%)

Query: 436 LNCSYNG----------YKPPKIISLNLTSEGLTGKISPSL-----SNLKSLENLDLSNN 480
           L  + N            + P +  L L    L       L       L  L+ L L++N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            L    P   S L  LR L+L+ N+L+
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
            ++  L L S+     I   +  NL +L  LDL ++ +    P+    L  L  L L   
Sbjct: 48  EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC 107

Query: 505 KLSGSV 510
            LS +V
Sbjct: 108 GLSDAV 113

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 450 SLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLS 507
            ++L+   L    I   L  +  L+ L L+ N  +  S  +  S+ P L  L L  N L 
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQ 464

Query: 508 GSVPTSLVARSQNGSLLLRIL 528
            +  T L      G   L++L
Sbjct: 465 LAWETELCWDVFEGLSHLQVL 485

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSI--PEFLSQLPLLRVLNLD 502
           P +  L+L S  +   + P     L  L  L L    L+ ++    +   L  L  L+L 
Sbjct: 73  PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS 131

Query: 503 GNKLS 507
            N++ 
Sbjct: 132 KNQIR 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 14/62 (22%), Positives = 25/62 (40%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  LNL    +      +   L +L+ L+LS N L          LP +  ++L  N 
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 506 LS 507
           ++
Sbjct: 350 IA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 15/62 (24%), Positives = 25/62 (40%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  LNL+   L    S +   L  +  +DL  N +     +    L  L+ L+L  N 
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373

Query: 506 LS 507
           L+
Sbjct: 374 LT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 437 NCSYNGYKPPKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPL 495
             ++ G     +  L+L+   +   ++      LK L+ L+L+ N +     E    L  
Sbjct: 257 QNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN 315

Query: 496 LRVLNLDGNKLS 507
           L+VLNL  N L 
Sbjct: 316 LQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 446 PKIISLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQL--PLLRVLNLD 502
             +  L+L+   +    + PS   L SL+++D S+N +       L  L    L   +L 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 503 GNKLSGSVPTSLVARSQN-GSLLLRIL 528
            N L   V            +++L IL
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEIL 209

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 467 SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP 511
             L + E L LS N +          L  L++L L       ++ 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 15/85 (17%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           L  +           PP+I  L +T   L   +    ++L   E LD  +N L+ ++PE 
Sbjct: 64  LQLNRLNLSSLPDNLPPQITVLEITQNALI-SLPELPASL---EYLDACDNRLS-TLPEL 118

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSL 514
            +    L+ L++D N+L+  +P   
Sbjct: 119 PAS---LKHLDVDNNQLT-MLPELP 139

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 450 SLNLTSEGLTGKIS-PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG 508
              L  E     +S      +     L L+  +L+ S+P+ L   P + VL +  N L  
Sbjct: 38  KQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQNALI- 93

Query: 509 SVPTSL 514
           S+P   
Sbjct: 94  SLPELP 99

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.1 bits (109), Expect = 3e-05
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 15/100 (15%)

Query: 436 LNCSYNGYK--PPKIISL---NLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           +N   N     P    SL   ++ +  LT    P L   +SLE LD+S N L  S+P   
Sbjct: 145 INADNNQLTMLPELPTSLEVLSVRNNQLTF--LPEL--PESLEALDVSTNLLE-SLPAVP 199

Query: 491 SQLPLLR----VLNLDGNKLSGSVPTSLVARSQNGSLLLR 526
            +               N+++  +P ++++     +++L 
Sbjct: 200 VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 14/84 (16%)

Query: 436 LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFL 490
           L+   N        P  +  L++ +  LT  +    + L   E ++  NN LT  +PE  
Sbjct: 105 LDACDNRLSTLPELPASLKHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELP 159

Query: 491 SQLPLLRVLNLDGNKLSGSVPTSL 514
           +    L VL++  N+L+  +P   
Sbjct: 160 TS---LEVLSVRNNQLT-FLPELP 179

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 17/81 (20%)

Query: 436 LNCSYNGYKPPKIISLNLTS---------EGLTGKISPSLSNLKSLENLDLSNNSLTGSI 486
           L+C         ++ ++LT          EG        +++   L  LD     +T  +
Sbjct: 259 LHCIQT-----DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-EL 312

Query: 487 PEFLSQLPLLRVLNLDGNKLS 507
              LSQ P L  L L+  +L+
Sbjct: 313 D--LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 436 LNCSYNG-------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L+C  +         K   +  L  TS  +T   +  LS   +L  L   +N LT ++  
Sbjct: 47  LDCHNSSITDMTGIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLACDSNKLT-NLD- 101

Query: 489 FLSQLPLLRVLNLDGNKLSGSVPTSL 514
            ++ L  L  LN D NKL+    +  
Sbjct: 102 -VTPLTKLTYLNCDTNKLTKLDVSQN 126

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 436 LNCSYNG------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           LNC+ N           ++  L+             ++    L  LD S N +T  +   
Sbjct: 132 LNCARNTLTEIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKIT-ELD-- 186

Query: 490 LSQLPLLRVLNLDGNKLS 507
           +SQ  LL  LN D N ++
Sbjct: 187 VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 12/78 (15%)

Query: 436 LNCSYNG------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           L C+ N        +   +  L   S  LT   +  ++ L  L  L+   N LT  +   
Sbjct: 69  LICTSNNITTLDLSQNTNLTYLACDSNKLT---NLDVTPLTKLTYLNCDTNKLT-KLD-- 122

Query: 490 LSQLPLLRVLNLDGNKLS 507
           +SQ PLL  LN   N L+
Sbjct: 123 VSQNPLLTYLNCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
             ++     +      + S   L +L +LD  N+S+T  +     +L  L  L    N +
Sbjct: 22  SEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTGI-EKLTGLTKLICTSNNI 76

Query: 507 S 507
           +
Sbjct: 77  T 77

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 436 LNCSYNG------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           LNC  N        +  ++  L+ +S  LT      ++ L  L   D S N LT  +   
Sbjct: 196 LNCDTNNITKLDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPLT-ELD-- 249

Query: 490 LSQLPLLRVLNLDGNKLS 507
           +S L  L  L+     L 
Sbjct: 250 VSTLSKLTTLHCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 11/103 (10%)

Query: 436 LNCSYNG------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           L+C   G       + PK++ L L +  LT ++   +S+   L++L   N  +       
Sbjct: 302 LDCQAAGITELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSS- 356

Query: 490 LSQLPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRILGKGG 532
           + ++P L        +       +L   S   ++   +L + G
Sbjct: 357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 436 LNCSYNG------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           L C  N           K+  LN  +  LT      +S    L  L+ + N+LT  I   
Sbjct: 90  LACDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID-- 143

Query: 490 LSQLPLLRVLNLDGNKLSGSVP 511
           +S    L  L+   NK    + 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLD 165

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 4e-07
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +  L+L + GL   +S  L  L  L+ L+LS N + G +     +LP L  LNL GNK
Sbjct: 49  VNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 506 LS 507
           L 
Sbjct: 107 LK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 441 NGYKPPKIISLNLTSEGLT-GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVL 499
               P  +  L L +     GKI    +   +LE L L N  L  S+   L +LP L+ L
Sbjct: 19  RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKL 76

Query: 500 NLDGNKLSG 508
            L  N++ G
Sbjct: 77  ELSENRIFG 85

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P ++ L+L        IS  +   L +L+ L+L   ++   +P   + L  L  L + GN
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNL-TPLVGLEELEMSGN 228

Query: 505 KLS 507
              
Sbjct: 229 HFP 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 13/90 (14%)

Query: 426 CSPMYYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLS 478
           CS  +     + C+  G        P     LNL    +   I   +  +L  LE L L 
Sbjct: 52  CSNQFSK---VVCTRRGLSEVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLG 107

Query: 479 NNSLTGSIPEF-LSQLPLLRVLNLDGNKLS 507
            NS+   I     + L  L  L L  N L+
Sbjct: 108 RNSIR-QIEVGAFNGLASLNTLELFDNWLT 136

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLS 507
           P+L+ L  LE L++S N     I       L  L+ L +  +++S
Sbjct: 212 PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLSGSVPTSLVA 516
           S   L SL+ L + N+ ++  I       L  L  LNL  N LS S+P  L  
Sbjct: 237 SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFT 287

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 451 LNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGN 504
           L + +  ++  I   +   L SL  L+L++N+L+ S+P    + L  L  L+L  N
Sbjct: 247 LWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNL-D 502
             + +L L    LT  I   +   L  L  L L NN +  SIP +  +++P L  L+L +
Sbjct: 123 ASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE 180

Query: 503 GNKLS 507
             KL 
Sbjct: 181 LKKLE 185

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 424 DPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT 483
            P  P Y   D  N  Y+         +++  +            L + + +   N+++ 
Sbjct: 4   KPRQPEYKCID-SNLQYDCV----FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 58

Query: 484 GSIPEFLSQLPLLRVLNLDGNKLS 507
                 L     + +LNL+  ++ 
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIE 82

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            ++  L L    LT   +  L N   L  +DLS N L   +     ++  L  L +  N+
Sbjct: 226 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 506 LS 507
           L 
Sbjct: 284 LV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
            ++  LNL    +  +I   + +   +++ L +  N++    P     +PLL VL L+ N
Sbjct: 69  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 127

Query: 505 KLSGSVPTSL 514
            LS S+P  +
Sbjct: 128 DLS-SLPRGI 136

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P +  L+L+   L   +  +      LENL L +NS+  ++   LS    L+ L L  N 
Sbjct: 295 PTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHND 350

Query: 506 LS 507
             
Sbjct: 351 WD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 450 SLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG 508
            +   +  +  K+  + L + + +E L+L++  +        +    ++ L +  N +  
Sbjct: 49  IVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR- 106

Query: 509 SVPTSL 514
            +P  +
Sbjct: 107 YLPPHV 112

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFL-SQLPLLRVLNLDG 503
             I  L +    +   + P    N+  L  L L  N L+ S+P  +    P L  L++  
Sbjct: 93  HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSN 150

Query: 504 NKLS 507
           N L 
Sbjct: 151 NNLE 154

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           PK+ +L++++  L  +I         SL+NL LS+N LT  +   LS +P L   N+  N
Sbjct: 141 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 196

Query: 505 KLS 507
            LS
Sbjct: 197 LLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P +  L L    L+  +   +  N   L  L +SNN+L     +       L+ L L  N
Sbjct: 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175

Query: 505 KLS 507
           +L+
Sbjct: 176 RLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P +   N++   L+     +L+   ++E LD S+NS+   +         L +L L  N 
Sbjct: 186 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNN 237

Query: 506 LS 507
           L+
Sbjct: 238 LT 239

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSAS----SSQGPKQFRTEVEL 569
           L  I+G GGFG VY  +   G EVA+K          SQ  +  R E +L
Sbjct: 11  LEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKL 59

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)

Query: 444 KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG 503
               ++SLN++S  LT  I   L     ++ LDL +N +  SIP+ + +L  L+ LN+  
Sbjct: 397 WTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVAS 453

Query: 504 NKLSGSVP 511
           N+L  SVP
Sbjct: 454 NQLK-SVP 460

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 18/57 (31%), Positives = 23/57 (40%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            N T  G         S +    +LD SNN LT ++ E    L  L  L L  N+L 
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 12/91 (13%)

Query: 436 LNCSYNGYK--PPKIIS-------LNLTSEGLT--GKISPSLSNLKSLENLDLSNNSLTG 484
           L+ S N       +          L L    L    KI+   + +KSL+ LD+S NS++ 
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 485 SIP-EFLSQLPLLRVLNLDGNKLSGSVPTSL 514
                  S    L  LN+  N L+ ++   L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           ++ S NG          K   LN++   ++   +  + +L  L  L +S+N +       
Sbjct: 5   VDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV 64

Query: 490 LSQLPLLRVLNLDGNKLS 507
                 L  L+L  NKL 
Sbjct: 65  FKFNQELEYLDLSHNKLV 82

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 6/77 (7%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNLDGNKLSG 508
           L+L+   L      S     +L++LDLS N+   ++P       +  L+ L L    L  
Sbjct: 74  LDLSHNKLV---KISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEK 129

Query: 509 SVPTSLVARSQNGSLLL 525
           S    +   + +  LL+
Sbjct: 130 SSVLPIAHLNISKVLLV 146

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 451 LNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS 509
           L+++   ++        S  KSL +L++S+N LT +I   L   P ++VL+L  NK+  S
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-S 435

Query: 510 VP 511
           +P
Sbjct: 436 IP 437

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.6 bits (121), Expect = 9e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
              I+ LNL+S  LTG +   L     ++ LDL NN +  SIP+ ++ L  L+ LN+  N
Sbjct: 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

Query: 505 KLSGSVP 511
           +L  SVP
Sbjct: 484 QLK-SVP 489

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 9e-05
 Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 436 LNCSYNGYK--PPKIIS-------LNLTSEGLT--GKISPSLSNLKSLENLDLSNNSLTG 484
           LN + N +     +  S       L L   GL    K++    N+ SLE LD+S NSL  
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 485 SIPEFLSQLPL-LRVLNLDGNKLSGSVPTSLVAR 517
              +        + VLNL  N L+GSV   L  +
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
             L+             +  S   L+ + N  T S+ +  S L  L+ L L  N L  + 
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392

Query: 511 P 511
            
Sbjct: 393 F 393

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 437 NCSYNGYK-----PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-- 488
            C   G       P  +  ++L+   +  +++  S S L+ L+ L +   +    I    
Sbjct: 16  ICINRGLHQVPELPAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT 74

Query: 489 FLSQLPLLRVLNLDGNKLSGSVPTSL 514
           F   L  L +L LD N+    + T  
Sbjct: 75  F-RGLSSLIILKLDYNQFL-QLETGA 98

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 437 NCSYNGYKPPKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSIPE--FLSQL 493
           N ++ G +   + + +L+   +   +  S+ S+   LE L L+ N +   I +  F   L
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAF-WGL 322

Query: 494 PLLRVLNLDGNKLSGSVP 511
             L  LNL  N L  S+ 
Sbjct: 323 THLLKLNLSQNFLG-SID 339

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
             +  L +  +     I   +   L SL  L L  N     +     + L  L VL L  
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQ 112

Query: 504 NKLSGSV 510
             L G+V
Sbjct: 113 CNLDGAV 119

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGN 504
             ++ LNL+   L    S    NL  LE LDLS N +  ++ +     LP L+ L LD N
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381

Query: 505 KLSGSVP 511
           +L  SVP
Sbjct: 382 QLK-SVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 451 LNLTSEGLTGKISP--SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGNKLS 507
           L LT   L G +        L SLE L L +N++    P  F   +    VL+L  NK+ 
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSI--PEFLSQLPLLRVLNLD 502
             +I L L       ++     + L +LE L L+  +L G++    F   L  L +L L 
Sbjct: 79  SSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR 137

Query: 503 GNKLS 507
            N + 
Sbjct: 138 DNNIK 142

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.5 bits (121), Expect = 9e-07
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P +  L+L        IS  +   L +L  L+L+  +L   IP   + L  L  L+L GN
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNL-TPLIKLDELDLSGN 217

Query: 505 KLS 507
            LS
Sbjct: 218 HLS 220

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 426 CSPMYYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLS 478
           CS  +     + C     +            LNL    +   I   S  +L+ LE L LS
Sbjct: 41  CSNQFSK---VICVRKNLREVPDGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLS 96

Query: 479 NNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            N +        + L  L  L L  N+L+
Sbjct: 97  RNHIRTIEIGAFNGLANLNTLELFDNRLT 125

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
             +  L L+   +   I   + + L +L  L+L +N LT +IP      L  L+ L L  
Sbjct: 88  RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145

Query: 504 NKLSGSVPTSL 514
           N +  S+P+  
Sbjct: 146 NPIE-SIPSYA 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 450 SLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLS 507
            L+L+   L+  I P S   L  L+ L +  + +   I       L  L  +NL  N L+
Sbjct: 211 ELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

Query: 508 GSVPTSLVA 516
             +P  L  
Sbjct: 269 -LLPHDLFT 276

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
             +  L +    +   I   +  NL+SL  ++L++N+LT  +P    + L  L  ++L  
Sbjct: 231 MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHH 288

Query: 504 N 504
           N
Sbjct: 289 N 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLS 507
           P+L+ L  L+ LDLS N L+ +I       L  L+ L +  +++ 
Sbjct: 201 PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFL-SQLPLLRVLNL-D 502
             + +L L    LT  I   +   L  L+ L L NN +  SIP +  +++P LR L+L +
Sbjct: 112 ANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGE 169

Query: 503 GNKLS 507
             +LS
Sbjct: 170 LKRLS 174

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 436 LNCSYN------GYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF 489
           L+ + N      G     +  L L +  L       L +LK+LE L + NN L  SI   
Sbjct: 90  LSVNRNRLKNLNGIPSACLSRLFLDNNELR-DTDS-LIHLKNLEILSIRNNKLK-SI-VM 145

Query: 490 LSQLPLLRVLNLDGNKLS 507
           L  L  L VL+L GN+++
Sbjct: 146 LGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
              +  NL  + +T  +      L  ++N +  N+++  S+   +     L+ L+L  N+
Sbjct: 19  ANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQ 74

Query: 506 LS 507
           +S
Sbjct: 75  IS 76

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 12/79 (15%)

Query: 436 LNCSYNGYK-------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
            N   +  +          +  L+L+   ++  +SP L +L  LE L ++ N L  ++  
Sbjct: 46  FNGDNSNIQSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLK-NL-N 101

Query: 489 FLSQLPLLRVLNLDGNKLS 507
            +     L  L LD N+L 
Sbjct: 102 GIPSAC-LSRLFLDNNELR 119

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 8/47 (17%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 461 KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           ++ P    L +    +L   S+T  +     +L  ++  N D + + 
Sbjct: 11  QVFP-DPGLANAVKQNLGKQSVT-DL-VSQKELSGVQNFNGDNSNIQ 54

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 524 LLRILGKGGFGTVYHG-YLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
              +LGKG FG      +   G  + +K L     +  + F  EV++
Sbjct: 14  HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKV 60

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSAS--SSQGPKQFRTEVEL 569
           +   +G G FGTV+      GS+VA+K+L      ++   +F  EV +
Sbjct: 41  IKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAI 87

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           LL +  +G FG V+   L     VA+K+      Q   Q   EV  +
Sbjct: 28  LLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQS-WQNEYEVYSL 72

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            K+ SL+L   G++  I+  L +L  LE+L L NN +T  I   LS+L  L  L+L+ N+
Sbjct: 112 KKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQ 167

Query: 506 LS 507
           +S
Sbjct: 168 IS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P++ SL L +  +T  I+  LS L  L+ L L +N ++  I   L+ L  L+ L L  N 
Sbjct: 134 PQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNH 189

Query: 506 LS 507
           +S
Sbjct: 190 IS 191

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 436 LNCSYNG-------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L  + N             +  L L    +   +S  L +LK L++L L +N ++  I  
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-DI-N 128

Query: 489 FLSQLPLLRVLNLDGNKLS 507
            L  LP L  L L  NK++
Sbjct: 129 GLVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            + I  NL  + +T       + L S++ +  +N+ +  S+ + +  LP +  L L+GNK
Sbjct: 24  AETIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK 79

Query: 506 LS 507
           L+
Sbjct: 80  LT 81

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 5/47 (10%), Positives = 17/47 (36%), Gaps = 3/47 (6%)

Query: 461 KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           +I             +L   S+T ++    ++L  +  +  + + + 
Sbjct: 16  QIFS-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 59

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 507 SGSVPTSLVARSQNGSL-LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRT 565
           SGS    LV R+   ++ L   +GKG FG V+ G    G EVA+K+    SS+  + +  
Sbjct: 28  SGSGLPLLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIF---SSREERSWFR 83

Query: 566 EVE 568
           E E
Sbjct: 84  EAE 86

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNLDG 503
             +  L+L+  G+   +S +   L+ LE+LD  +++L   + E      L  L  L++  
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISH 135

Query: 504 NKLS 507
               
Sbjct: 136 THTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 446 PKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
            ++  L+     L      S+  +L++L  LD+S+     +     + L  L VL + GN
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 160

Query: 505 KLSGSVPTSL 514
               +    +
Sbjct: 161 SFQENFLPDI 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 451 LNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS 509
           L+L+   L  ++SP + ++L SL+ L++S+N+           L  L+VL+   N +  +
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237

Query: 510 VPTSL 514
                
Sbjct: 238 SKKQE 242

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 463 SPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           S S     SL+ LDLS N +  ++      L  L  L+   + L      S+
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 121

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
             +I L+++             + L SLE L ++ NS   +      ++L  L  L+L  
Sbjct: 126 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184

Query: 504 NKLSGSVPTSL 514
            +L   +  + 
Sbjct: 185 CQLE-QLSPTA 194

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNLD 502
             +  LN++       +       L SL+ LD S N +  +  +         L  LNL 
Sbjct: 199 SSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

Query: 503 GNKLS 507
            N  +
Sbjct: 257 QNDFA 261

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 507 SGSVPTSLVARSQNGSL-LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRT 565
           SGS    LV R+    + +++ +GKG +G V+ G    G +VA+K+     +     +  
Sbjct: 23  SGSGLPLLVQRTIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVF---FTTEEASWFR 78

Query: 566 EVE 568
           E E
Sbjct: 79  ETE 81

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSAS--SSQGPKQFRTEVEL 569
            L  L +   G ++ G    G+++ +K+L     S++  + F  E   
Sbjct: 14  FLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPR 60

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 424 DPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT 483
            P  P Y   D  N  Y+         +++  +            L + + +   N+++ 
Sbjct: 10  KPRQPEYKCID-SNLQYDCV----FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR 64

Query: 484 GSIP-EFLSQLPLLRVLNLDGNKLS 507
             +P   L     + +LNL+  ++ 
Sbjct: 65  -KLPAALLDSFRQVELLNLNDLQIE 88

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGN 504
            ++  L L    LT   +  L N   L  +DLS N L   I      ++  L  L +  N
Sbjct: 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNN 288

Query: 505 KLS 507
           +L 
Sbjct: 289 RLV 291

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 20/84 (23%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTG------------KISPSLSNLKSLENLDLSNNSLT 483
           L  S N     ++++LNL  + +               +  +      LENL L +NS+ 
Sbjct: 283 LYISNN-----RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 337

Query: 484 GSIPEFLSQLPLLRVLNLDGNKLS 507
            ++   LS    L+ L L  N   
Sbjct: 338 -TLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 8e-06
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
            ++  LNL    +  +I   + +   +++ L +  N++    P     +PLL VL L+ N
Sbjct: 75  RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN 133

Query: 505 KLS 507
            LS
Sbjct: 134 DLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 9/71 (12%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDG 503
                +   +  +  K+  + L + + +E L+L++  +   I  +  +    ++ L +  
Sbjct: 51  NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 108

Query: 504 NKLSGSVPTSL 514
           N +   +P  +
Sbjct: 109 NAIR-YLPPHV 118

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 5/63 (7%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           PK+ +L++++  L  +I         SL+NL LS+N LT  +   LS +P L   N+  N
Sbjct: 147 PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYN 202

Query: 505 KLS 507
            LS
Sbjct: 203 LLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 446 PKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN 504
           P +  L L    L+  +   +  N   L  L +SNN+L     +       L+ L L  N
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181

Query: 505 KLSGSVPTSL 514
           +L+  V  SL
Sbjct: 182 RLT-HVDLSL 190

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 8/62 (12%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P +   N++   L+     +L+   ++E LD S+NS+   +         L +L L  N 
Sbjct: 192 PSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQHNN 243

Query: 506 LS 507
           L+
Sbjct: 244 LT 245

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
            + + + +   L+   + SL    +  N+ +++ SL   + + L+Q+  L  L    N+L
Sbjct: 233 DLDTFHFSE--LSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289

Query: 507 SGSVPTSLVAR 517
             SVP  +  R
Sbjct: 290 K-SVPDGIFDR 299

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 450 SLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGNKLS 507
            L + +  L     P SL +++++ +L L        + E F+     +  L L    L 
Sbjct: 178 ELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

Query: 508 GSVPTSLVARSQNGSLLLRIL 528
               + L     N  +     
Sbjct: 236 TFHFSELSTGETNSLIKKFTF 256

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 450 SLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGNKLS 507
           +L LTS G+   I   S S+L SLE+LDLS N L+ ++   +   L  L  LNL GN   
Sbjct: 80  ALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK 137

Query: 508 GSVPTSL 514
               TSL
Sbjct: 138 TLGETSL 144

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGNKL 506
           + +T E L  ++   L+ +  L  L+ S N L  S+P+    +L  L+ + L  N  
Sbjct: 259 VKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDG 503
            K+  L + +     KI     + L  LE L++  + L  S     L  +  +  L L  
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHM 207

Query: 504 NKLS 507
            +  
Sbjct: 208 KQHI 211

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           +  ++G+G FG V         +VAIK + + S +  K F  E+  
Sbjct: 12  VEEVVGRGAFGVVCKAKW-RAKDVAIKQIESESER--KAFIVELRQ 54

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            +  +++ +   +  K+      L+ L+ L ++NN +          LP L  L L  N 
Sbjct: 42  DQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

Query: 506 LS 507
           L 
Sbjct: 100 LV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           + LT+E +  +     +N      LDL    +   I    + L     ++   N++ 
Sbjct: 2   VKLTAELIE-QA-AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR 55

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 441 NGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLN 500
                 +   L+L    +   I    + L   + +D S+N +   + +    L  L+ L 
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLL 70

Query: 501 LDGNKLS 507
           ++ N++ 
Sbjct: 71  VNNNRIC 77

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 446 PKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLT--GSIPEFLSQLPLLRVLNLD 502
            ++ +L + +  +  +I   L   L  L  L L+NNSL   G + + L+ L  L  L + 
Sbjct: 64  RRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCIL 121

Query: 503 GN 504
            N
Sbjct: 122 RN 123

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPE 488
           +NC            P     L+L+   L    S + L     L  L+L    LT  +  
Sbjct: 15  VNCDKRNLTALPPDLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQV 72

Query: 489 FLSQLPLLRVLNLDGNKLSGSVPT 512
               LP+L  L+L  N+L  S+P 
Sbjct: 73  D-GTLPVLGTLDLSHNQLQ-SLPL 94

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
                L  L  LDLS+N L  S+P     LP L VL++  N+L+
Sbjct: 71  QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT 113

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 13/89 (14%)

Query: 436 LNCSYNGYK--P------PKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSI 486
           L+ S+N  +  P      P +  L+++   LT  +       L  L+ L L  N L  ++
Sbjct: 82  LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TL 139

Query: 487 PE-FLSQLPLLRVLNLDGNKLSGSVPTSL 514
           P   L+  P L  L+L  N L+  +P  L
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLT-ELPAGL 167

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.8 bits (114), Expect = 5e-06
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 436 LNCSYNGY-------KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L+ +               +  L L    +T  ISP L+ L +L+ L + N  ++  +  
Sbjct: 112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DL-T 167

Query: 489 FLSQLPLLRVLNLDGNKLS 507
            L+ L  L  L  D NK+S
Sbjct: 168 PLANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            KI  L L+   L   +S  ++ L+S++ LDL++  +T   P  L+ L  L+VL LD N+
Sbjct: 85  TKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQ 140

Query: 506 LS 507
           ++
Sbjct: 141 IT 142

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
             +I L L    +T  ++P L NL  +  L+LS N L  ++   ++ L  ++ L+L   +
Sbjct: 63  NNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLK-NVSA-IAGLQSIKTLDLTSTQ 118

Query: 506 LS 507
           ++
Sbjct: 119 IT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
              I +      +T   + + ++L  +  L      +T +I E +  L  L  L L  N+
Sbjct: 19  ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQ 74

Query: 506 LS 507
           ++
Sbjct: 75  IT 76

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 3/47 (6%)

Query: 461 KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            I P    L +   +    +++T ++    + L  +  L+  G  ++
Sbjct: 11  VIFP-DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT 54

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 5e-06
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
            + I  NL  + +T       + L S++ +  +N+ +  S+ + +  LP +  L L+GNK
Sbjct: 21  AETIKDNLKKKSVT-DAVT-QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNK 76

Query: 506 LS 507
           L+
Sbjct: 77  LT 78

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 5e-06
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 11/79 (13%)

Query: 436 LNCSYNG-------YKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE 488
           L  + N             +  L L    +   +S  L +LK L++L L +N ++  I  
Sbjct: 70  LFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLSS-LKDLKKLKSLSLEHNGIS-DI-N 125

Query: 489 FLSQLPLLRVLNLDGNKLS 507
            L  LP L  L L  NK++
Sbjct: 126 GLVHLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.2 bits (114), Expect = 6e-06
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           P++ SL L +  +T  I+  LS L  L+ L L +N ++  I   L+ L  L+ L L  N 
Sbjct: 131 PQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNH 186

Query: 506 LS 507
           +S
Sbjct: 187 IS 188

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 6/47 (12%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 461 KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
           +I P           +L   S+T ++    ++L  +  +  + + + 
Sbjct: 13  QIFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           LL  +GKG +G V+ G    G  VA+K+    SS+  K +  E EL
Sbjct: 12  LLECVGKGRYGEVWRGSW-QGENVAVKIF---SSRDEKSWFRETEL 53

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
            ++ +L+L   GL  ++ P     L +L+ L L +N+L  ++P+     L  L  L L G
Sbjct: 105 GRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162

Query: 504 NKLS 507
           N++S
Sbjct: 163 NRIS 166

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE- 488
            +C   G +      P     + L    ++   + S    ++L  L L +N L   I   
Sbjct: 16  TSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAA 74

Query: 489 FLSQLPLLRVLNLDGNKLSGSVP 511
             + L LL  L+L  N    SV 
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVD 97

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNLDG 503
             +  L L S  L  +I   + + L  LE LDLS+N+   S+       L  L  L+LD 
Sbjct: 56  RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 504 NKLSGSVP 511
             L   + 
Sbjct: 115 CGLQ-ELG 121

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDG 503
             +  L L    L   +   +  +L +L +L L  N ++ S+PE     L  L  L L  
Sbjct: 129 AALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQ 186

Query: 504 NKLS 507
           N+++
Sbjct: 187 NRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDG 503
             +  L L    +   + P +  +L  L  L L  N+L+ ++P   L+ L  L+ L L+ 
Sbjct: 177 HSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLND 234

Query: 504 N 504
           N
Sbjct: 235 N 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLSGSVPTSL 514
           +   L SL+ L L  N +   +       L  L  L L  N LS ++PT  
Sbjct: 172 AFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEA 220

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 450 SLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNLDGNKLS 507
           SL L+   L   IS  +   + +L  LDLS+N L  ++     S L  L VL L  N + 
Sbjct: 68  SLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV 125

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 436 LNCSYNGYK------PPKIISLNLTSEGLTGKISP--SLSNLKSLENLDLSNNSLTGSIP 487
           L+CS           P     L+L+   L+ ++    + + L +L +L LS+N L   I 
Sbjct: 23  LSCSKQQLPNVPQSLPSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FIS 80

Query: 488 E-FLSQLPLLRVLNLDGNKLSGSVP 511
                 +P LR L+L  N L  ++ 
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLH-TLD 104

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPE----FLSQLPLLRVLNLDGNKLS 507
           +  ++  L+ L LS N ++   P       ++LP L +L+L  NKL 
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG----SIPEFLS 491
           +    NG          +  EG+   +   L+  + L+ LDL +N+ T     ++   L 
Sbjct: 192 VKMVQNG----------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241

Query: 492 QLPLLRVLNLDGNKLS 507
             P LR L L+   LS
Sbjct: 242 SWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 16/77 (20%)

Query: 436 LNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT-----GSIPEFL 490
           + C  N           L +  +    + +  + + L  + +  N +        + E L
Sbjct: 164 IICGRN----------RLENGSMKE-WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 491 SQLPLLRVLNLDGNKLS 507
           +    L+VL+L  N  +
Sbjct: 213 AYCQELKVLDLQDNTFT 229

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 458 LTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN-KLSGSVPTSLVA 516
           L  + SP L  + S+E L  S     GS   +      + +     N +L  +V   ++ 
Sbjct: 26  LVPRGSPGLDGICSIEELSTSLYKKAGSENLYFQGANTVHIDLSALNPELVQAVQHVVIG 85

Query: 517 RSQNGSLLLRILGKGGFGTVYHGYLADGSE----VAIKMLSASSSQG-PKQFRTEVEL 569
            S        ++G+G FG VYHG L D        A+K L+  +  G   QF TE  +
Sbjct: 86  PSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGII 143

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKM--LSASSSQGPKQFRTEVEL 569
           +L+ +G GG   V+          AIK   L  + +Q    +R E+  
Sbjct: 32  ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAY 79

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.3 bits (111), Expect = 8e-06
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 7/78 (8%)

Query: 446 PKIISLNLTSEGLTGKISPSLSN---LKSLENLDLSNNSLTGS----IPEFLSQLPLLRV 498
           P +  L +        +         L  LE +D+S   LT      + + + ++  L+ 
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 499 LNLDGNKLSGSVPTSLVA 516
           +N+  N LS  +   L  
Sbjct: 312 INMKYNYLSDEMKKELQK 329

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSSQGPKQFRTEVEL 569
            +  LGKG FG+V            G+ VA+K L  S     + F+ E+++
Sbjct: 27  YISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQI 77

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKML--SASSSQGPKQFRTEVEL 569
           L R+LGKG FG+V    L         VA+KML     +S   ++F  E   
Sbjct: 27  LGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAAC 78

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSAS--SSQGPKQFRTEVEL 569
           +  ++GKG FG VYHG      EVAI+++     +    K F+ EV  
Sbjct: 37  IGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMA 82

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 514 LVARSQNGSLLLRILGKGGFGTVYHGYLADGSE----VAIKML-SASSSQGPKQFRTEVE 568
           L+   +  +   R++GKG FG VYHG   D ++     AIK L   +  Q  + F  E  
Sbjct: 15  LIPHERVVTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGL 74

Query: 569 L 569
           L
Sbjct: 75  L 75

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 13/94 (13%)

Query: 424 DPCSPMYYSWDGLNCSYNGYK--PPKIISL-NLTSEGLTG-----KISP-SLSNLKSLEN 474
           D C P  +   GL C+ +G       +    NLT   +        +    L  L  L N
Sbjct: 3   DACCP--HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN 60

Query: 475 LDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLS 507
           L +  + L   +        P L  LNL  N L 
Sbjct: 61  LTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALE 93

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSAS--SSQGPKQFRTEVEL 569
           + + +G G FGTVY G      +VA+KML+ +  + Q  + F+ EV +
Sbjct: 28  VGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGV 73

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 13/87 (14%)

Query: 437 NCSYNGYK------PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE- 488
           +C   G        P  I  + L    +   I P + S  K L  +DLSNN ++  +   
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPD 74

Query: 489 -FLSQLPLLRVLNLDGNKLSGSVPTSL 514
            F   L  L  L L GNK++  +P SL
Sbjct: 75  AF-QGLRSLNSLVLYGNKIT-ELPKSL 99

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
            ++ +G G FG V+ GY  +  +VAIK +   +    + F  E E+
Sbjct: 12  FVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS-EEDFIEEAEV 56

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKM--LSASSSQGPKQFRTEVEL 569
           +L+ +G GG   V+          AIK   L  + +Q    +R E+  
Sbjct: 13  ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAY 60

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKM--LSASSSQGPKQFRTEVEL 569
           +L+ +G GG   V+          AIK   L  + +Q    +R E+  
Sbjct: 60  ILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAY 107

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
            L+ LG G FG V +G      +VAIKM+   S     +F  E ++
Sbjct: 28  FLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS-EDEFIEEAKV 72

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKMLSASSSQG-PKQFRTEVEL 569
              ++G+G FG VYHG L D        A+K L+  +  G   QF TE  +
Sbjct: 29  FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGII 79

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           LL+ LG G FG V  G      +VA+KM+   S     +F  E + 
Sbjct: 12  LLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS-EDEFFQEAQT 56

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQGPKQFRTEVELI 570
           L R LG+G FG V+     + S       VA+K L   +    K F+ E EL+
Sbjct: 19  LKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELL 71

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKML--SASSSQGPKQFRTEVELI 570
           L +ILG+G FG+V  G L         VA+K +    SS +  ++F +E   +
Sbjct: 38  LGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM 90

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 44.9 bits (107), Expect = 4e-05
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE-----VAIKML-SASSSQGPKQFRTEVEL 569
            +++LG G FGTVY G      E     VAIK L  A+S +  K+   E  +
Sbjct: 19  KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV 70

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSSQGPKQFRTEVEL 569
            L+ LGKG FG+V            G  VA+K L  S+ +  + F  E+E+
Sbjct: 14  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEI 64

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           LL+ +GKG FG V  G    G++VA+K +   ++   + F  E  +
Sbjct: 25  LLQTIGKGEFGDVMLGD-YRGNKVAVKCIKNDAT--AQAFLAEASV 67

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 44.1 bits (105), Expect = 6e-05
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           L+  LG G FG V+ GY    ++VA+K L   S   P  F  E  L
Sbjct: 17  LVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS-PDAFLAEANL 61

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSSQGPKQFRTEVEL 569
            L+ LGKG FG+V            G  VA+K L  S+ +  + F  E+E+
Sbjct: 45  FLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEI 95

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE-----VAIKML-SASSSQGPKQFRTEVEL 569
            L++LG G FGTV+ G      E     V IK++   S  Q  +     +  
Sbjct: 17  KLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLA 68

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQGPKQFRTEVELI 570
           L   LG+G FG V+     +         VA+K L  +S    + F+ E EL+
Sbjct: 45  LKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELL 97

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQG-PKQFRTEVELI 570
           + R LG+G FG VY G      +      VAIK ++ ++S     +F  E  ++
Sbjct: 29  MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 82

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 1/31 (3%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLS 553
           L  +LGKGGFGTV+ G+ L D  +VAIK++ 
Sbjct: 35  LGPLLGKGGFGTVFAGHRLTDRLQVAIKVIP 65

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 507 SGSVPTSLVARSQNGS-LLLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPK--- 561
           +  +P  LV        +  R LGKGGF   +           A K++  S    P    
Sbjct: 1   AKEIPEVLVDPRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQRE 60

Query: 562 QFRTEVEL 569
           +   E+ +
Sbjct: 61  KMSMEISI 68

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLA-----DGSEVAIKML-SASSSQGPKQFRTEVEL 569
            +R LG+G FG V            G +VA+K L   S        + E+E+
Sbjct: 25  RIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEI 76

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPK---QFRTEVEL 569
             R LGKGGF   +           A K++  S    P    +   E+ +
Sbjct: 45  RGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISI 94

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYL-----ADGSEVAIKML-SASSSQGPKQFRTEVEL 569
            +R LG+G FG V            G  VA+K L + +  Q    ++ E+++
Sbjct: 35  KIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDI 86

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           + R+L +GGF  VY    +  G E A+K L ++  +  +    EV  
Sbjct: 32  VRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCF 78

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE-----VAIKML-SASSSQGPKQFRTEVEL 569
            +++LG G FGTVY G      E     VAIK L  A+S +  K+   E  +
Sbjct: 19  KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYV 70

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 437 NCSYNGYK------PPKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPE- 488
           +CS           P     L+L S  L+  +       L  L  L L++N L  ++P  
Sbjct: 22  DCSSKKLTAIPSNIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG 79

Query: 489 -FLSQLPLLRVLNLDGNKLSGSVPT 512
            F  +L  L  L +  NKL  ++P 
Sbjct: 80  IF-KELKNLETLWVTDNKLQ-ALPI 102

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKML-SASSSQGPKQFRTEVEL 569
           L RILG+G FG VY G   +       VA+K      +    ++F +E  +
Sbjct: 16  LNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVI 66

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 527 ILGKGGFGTVYHGY-LADGSEVAIK--MLSASSSQGPKQFRTEVEL 569
            +G+G F TVY G       EVA         +    ++F+ E E+
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEM 78

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 446 PKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNLDG 503
           P I  + ++ +    ++   S  NL  + ++++ N      I  + L +LPLL+ L +  
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 504 NKLSGSVPTSLVARSQNGSLLLRILG 529
             L    P      S +   +L I  
Sbjct: 115 TGLK-MFPDLTKVYSTDIFFILEITD 139

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 462 ISPS-LSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNLDGNKLSGSVPT 512
           I P  L  L  L+ L + N  L    P+   +    +  +L +  N    S+P 
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 431 YSWDGLNCSYNGYK-----PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTG 484
           +  +    +    +     PP   +L L    L   I   + SNL ++  + +S +    
Sbjct: 11  HQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQ 69

Query: 485 SIPEFL-SQLPLLRVLNLDGNKLSGSVP 511
            +       L  +  + +   +    + 
Sbjct: 70  QLESHSFYNLSKVTHIEIRNTRNLTYID 97

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 446 PKIISLNLTSEGLTGKISP--SLSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNL 501
           P +  L + + GL         + +      L++++N    SIP   F         L L
Sbjct: 105 PLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163

Query: 502 DGNKLSGSVPTSLVARSQNGSLLL 525
             N  + SV       ++  ++ L
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYL 186

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 10/63 (15%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQGPKQ-FRTEVEL---IDYY 573
           L + LG+G FG V         +      VA+KML   ++    +   +E+++   I ++
Sbjct: 31  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHH 90

Query: 574 KNL 576
            N+
Sbjct: 91  LNV 93

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 526 RILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP---KQFRTEVELI 570
            +LG+              G    + +   +        KQ + EV  +
Sbjct: 84  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL 132

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 8/54 (14%)

Query: 524 LLRILGKGGFGTVYHGYLADGS--------EVAIKMLSASSSQGPKQFRTEVEL 569
               LG+G F  ++ G   +          EV +K+L  +     + F     +
Sbjct: 12  FNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASM 65

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLS 553
           +  +LG GGFG+VY G  ++D   VAIK + 
Sbjct: 47  VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVE 77

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 8/73 (10%)

Query: 444 KPPKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSIPE---FLSQLPLLRVL 499
               +  L      L   +      +LK+L+ L++++N +  S      F S L  L  L
Sbjct: 98  GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF-SNLTNLEHL 154

Query: 500 NLDGNKLSGSVPT 512
           +L  NK+  S+  
Sbjct: 155 DLSSNKIQ-SIYC 166

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYLADGS------EVAIKMLSA-SSSQGPKQFRTEVELI 570
           L+R LG G FG VY G ++         +VA+K L    S Q    F  E  +I
Sbjct: 34  LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 87

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 524 LLRILGKGGFGTVYHGYL-ADGSEVAIKML-SASSSQGPKQFRTEVEL 569
           L   +G+G FG V+ G L AD + VA+K            +F  E  +
Sbjct: 118 LGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARI 165

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 6/51 (11%), Positives = 16/51 (31%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP---KQFRTEVELI 570
           L+  L  G    V+    +    + A+K+ +  +       ++        
Sbjct: 66  LVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAA 116

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKMLSASSSQGPKQ-FRTEVEL 569
           L R +G+G FG V+ G           VAIK     +S   ++ F  E   
Sbjct: 19  LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALT 69

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQGPKQ-FRTEVELI 570
            +  LG+  FG VY G+L   +       VAIK L   +    ++ FR E  L 
Sbjct: 13  FMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLR 66

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE---VAIKML-SASSSQGPKQFRTEVEL---IDYYKNL 576
              ++G+G FG V    +         AIK +   +S    + F  E+E+   + ++ N+
Sbjct: 29  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNI 88

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQGPKQ-FRTEVELI 570
            +R +G+G FG V+               VA+KML   +S   +  F+ E  L+
Sbjct: 51  YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM 104

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPK---QFRTEVE 568
           +  +LGKG F  VY    +  G EVAIKM+   +        + + EV+
Sbjct: 15  VGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVK 63

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVEL 569
            ++ LG+GGF  V     L DG   A+K +     Q  ++ + E ++
Sbjct: 33  FIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADM 79

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKMLSASSSQGPKQ-FRTEVEL 569
           L R +G+G FG V+ G           VAIK     +S   ++ F  E   
Sbjct: 394 LGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALT 444

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYLADGS------EVAIKMLSASSS-QGPKQFRTEVELI 570
           L+R LG G FG VY G ++         +VA+K L    S Q    F  E  +I
Sbjct: 75  LIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 128

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           L   LG+G FG V+ G     + VAIK L   +   P+ F  E ++
Sbjct: 188 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-PEAFLQEAQV 232

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 524 LLRILGKGGFGTVYHGYLADGS-EVAIKMLSASSSQGPKQFRTEVEL 569
           +   LG G +G VY G     S  VA+K L   + +  ++F  E  +
Sbjct: 17  MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEAAV 62

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 526 RILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVEL 569
            +LGKG +G VY G  L++   +AIK +    S+  +    E+ L
Sbjct: 28  VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIAL 72

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQGPKQ-FRTEVEL 569
           L + LG+G FG V                VA+KML  ++S    +   +E  +
Sbjct: 27  LGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNV 79

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           L + LG G FG V+       ++VA+K +   S    + F  E  +
Sbjct: 192 LEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS-VEAFLAEANV 236

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           L   LG+G FG V+ G     + VAIK L   +   P+ F  E ++
Sbjct: 271 LEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS-PEAFLQEAQV 315

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 524 LLRILGKGGFGTVYHGYLAD--------GSEVAIKMLSASSSQGPKQ-FRTEVEL---ID 571
           L + LG+G FG V                  VA+KML   +++       +E+E+   I 
Sbjct: 39  LGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 98

Query: 572 YYKNL 576
            +KN+
Sbjct: 99  KHKNI 103

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKML-SASSSQGPKQFRTEVEL 569
           + +I+G G  G V +G L    +    VAIK L +  + +  + F +E  +
Sbjct: 53  IEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASI 103

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 444 KPPKIISLNLTSEGLTGK-ISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLD 502
            P ++  ++L++  +    +   LS    L+NL L    L+  I   L++   L  LNL 
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 503 G 503
           G
Sbjct: 151 G 151

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           LL+ +GKG FG V  G    G++VA+K +   ++   + F  E  +
Sbjct: 197 LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDAT--AQAFLAEASV 239

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 526 RILGKGGFGTVYHGY-LADGSEVAIKMLSAS---SSQGPKQFRTEVELI 570
            +LG+              G    + +   +    S   KQ + EV  +
Sbjct: 79  TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRL 127

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 41.5 bits (98), Expect = 6e-04
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKML-SASSSQGPKQFRTEVEL---IDYY 573
             + LG G FG V         +      VA+KML S + +   +   +E+++   +  +
Sbjct: 50  FGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQH 109

Query: 574 KNL 576
           +N+
Sbjct: 110 ENI 112

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 524 LLRILGKGGFGTVYHGYLAD--------GSEVAIKML-SASSSQGPKQFRTEVEL---ID 571
           L + LG+G FG V                  VA+KML   ++ +      +E+E+   I 
Sbjct: 85  LGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG 144

Query: 572 YYKNL 576
            +KN+
Sbjct: 145 KHKNI 149

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 14/85 (16%)

Query: 437 NCSYNGYK------PPKIISLNLTSEGLTGKISPS--LSNLKSLENLDLSNNSLTGSIPE 488
           +CS           P     L L +   T  +  +     L  L  ++ SNN +T  I E
Sbjct: 17  DCSNQKLNKIPEHIPQYTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEE 74

Query: 489 --FLSQLPLLRVLNLDGNKLSGSVP 511
             F      +  + L  N+L  +V 
Sbjct: 75  GAF-EGASGVNEILLTSNRLE-NVQ 97

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 15/45 (33%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 524 LLRILGKGGFGTVYHGYLADGS----EVAIKMLSASSSQGPKQFR 564
           LL  LG G FG V  G     S     VA+K L       P+   
Sbjct: 22  LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMD 66

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 12/65 (18%)

Query: 524 LLRILGKGGFGTVYHGYLAD--------GSEVAIKML-SASSSQGPKQFRTEVEL---ID 571
           L + LG+G FG V                ++VA+KML S ++ +      +E+E+   I 
Sbjct: 73  LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG 132

Query: 572 YYKNL 576
            +KN+
Sbjct: 133 KHKNI 137

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 10/63 (15%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQGPKQ-FRTEVEL---IDYY 573
             ++LG G FG V +      S+      VA+KML   +    ++   +E+++   +  +
Sbjct: 49  FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSH 108

Query: 574 KNL 576
           +N+
Sbjct: 109 ENI 111

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 8e-04
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 446 PKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSN-NSLTGSIP-EFLSQLPLLRVLNLD 502
             +  + ++   +   I     SNL  L  + +   N+L   I  E    LP L+ L + 
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLIS 112

Query: 503 GNKLSGSVPTSLVARSQNGSLLLRIL 528
              +       L    +  SL   +L
Sbjct: 113 NTGI-----KHLPDVHKIHSLQKVLL 133

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQG-PKQFRTEVEL---IDYY 573
             + LG G FG V         +      VA+KML  S+     +   +E+++   +  +
Sbjct: 27  FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNH 86

Query: 574 KNL 576
            N+
Sbjct: 87  MNI 89

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP-KQFRTEVE 568
           L  ILG+G    V+ G     G   AIK+ +  S   P      E E
Sbjct: 13  LSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFE 59

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE-----VAIKML-SASSSQGPKQFRTEVEL 569
             +++G G FG VY G L   S      VAIK L +  + +    F  E  +
Sbjct: 48  RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 99

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.87
2jwp_A	174	Malectin, MGC80075; sugar binding, sugar binding p	99.82
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.1
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.03
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.76
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.56
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.55
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.54
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	98.52
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	98.52
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.29
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.28
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.24
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	98.21
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.19
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.17
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.16
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.15
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	98.14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.13
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.13
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	98.13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.11
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	98.07
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	98.07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	97.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.96
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	97.94
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.9
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.89
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	97.88
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	97.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.85
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.85
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.81
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	97.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.8
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.8
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.8
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.73
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	97.72
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	97.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.71
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.7
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.69
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	97.69
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	97.66
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	97.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.63
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.63
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.63
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.62
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	97.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.6
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	97.6
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.59
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.59
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	97.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.58
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	97.56
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.55
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.55
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	97.54
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	97.53
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	97.53
3niz_A	311	Rhodanese family protein; structural genomics, str	97.52
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	97.52
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.51
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	97.5
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	97.49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.47
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.47
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.47
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	97.46
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	97.46
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	97.46
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	97.46
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.45
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	97.45
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	97.45
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	97.45
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	97.44
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.43
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	97.43
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.41
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	97.41
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	97.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.4
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.39
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	97.39
3uqc_A	286	Probable conserved transmembrane protein; structur	97.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.38
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	97.38
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	97.37
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	97.36
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.35
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	97.35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.35
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	97.35
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	97.35
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	97.35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.35
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.34
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	97.33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.33
3o0g_A	292	Cell division protein kinase 5; kinase activator c	97.33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.33
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	97.33
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	97.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.31
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	97.31
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	97.3
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	97.3
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	97.29
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.28
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	97.26
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.26
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	97.26
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	97.25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.25
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.25
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	97.24
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	97.24
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	97.24
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	97.24
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	97.24
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	97.24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.24
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	97.23
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	97.23
3soc_A	322	Activin receptor type-2A; structural genomics cons	97.22
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	97.22
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	97.22
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	97.21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.21
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	97.21
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	97.2
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	97.2
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.2
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	97.2
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.2
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.2
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.19
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	97.19
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.17
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	97.17
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	97.16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.15
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	97.15
3bhy_A	283	Death-associated protein kinase 3; death associate	97.15
3ork_A	311	Serine/threonine protein kinase; structural genomi	97.14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.14
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	97.14
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	97.14
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	97.14
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	97.14
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	97.13
3pls_A	298	Macrophage-stimulating protein receptor; protein k	97.12
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	97.12
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	97.12
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	97.11
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	97.11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	97.11
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	97.11
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	97.11
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	97.11
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	97.11
3rp9_A	458	Mitogen-activated protein kinase; structural genom	97.11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.1
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	97.09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.09
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	97.09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	97.09
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	97.08
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	97.08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	97.08
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	97.07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.07
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	97.06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	97.06
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	97.06
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	97.06
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	97.06
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	97.05
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	97.05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.04
2a19_B	284	Interferon-induced, double-stranded RNA-activated	97.04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	97.04
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	97.04
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	97.03
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	97.03
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	97.03
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	97.02
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	97.02
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	97.02
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	97.01
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.01
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	97.01
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	97.01
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	97.01
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	97.01
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	97.01
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	97.0
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	97.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	97.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	97.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	97.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	97.0
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.99
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	96.99
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	96.99
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	96.99
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	96.98
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	96.98
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	96.98
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	96.97
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	96.97
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	96.97
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	96.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	96.96
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	96.96
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	96.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	96.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	96.96
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	96.95
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	96.95
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	96.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	96.94
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	96.94
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	96.94
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	96.94
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	96.93
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	96.92
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	96.92
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	96.92
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	96.92
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	96.92
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	96.91
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	96.9
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	96.9
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	96.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	96.89
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	96.89
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	96.89
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	96.89
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	96.89
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	96.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.88
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	96.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	96.88
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	96.88
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	96.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	96.87
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	96.86
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	96.86
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	96.86
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	96.85
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	96.85
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	96.83
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	96.83
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	96.82
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	96.82
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	96.81
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	96.81
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	96.81
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	96.8
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	96.8
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	96.78
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	96.77
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	96.77
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	96.77
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	96.76
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	96.75
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	96.74
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	96.74
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	96.73
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	96.73
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.72
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	96.72
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	96.72
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	96.72
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	96.72
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	96.71
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	96.71
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	96.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.7
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	96.7
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	96.69
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	96.67
3an0_A	340	Dual specificity mitogen-activated protein kinase;	96.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	96.67
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	96.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.65
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	96.65
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	96.65
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	96.64
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	96.64
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	96.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.61
3aln_A	327	Dual specificity mitogen-activated protein kinase;	96.6
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	96.6
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	96.6
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	96.6
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.57
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	96.57
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.55
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	96.54
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	96.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	96.51
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	96.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	96.5
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	96.49
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.49
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	96.47
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	96.47
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	96.47
3fme_A	290	Dual specificity mitogen-activated protein kinase;	96.47
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	96.44
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	96.42
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	96.39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.37
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	96.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.36
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	96.34
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	96.33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	96.32
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	96.32
2dyl_A	318	Dual specificity mitogen-activated protein kinase	96.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	96.29
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	96.29
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	96.2
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.19
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	96.18
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	96.17
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	96.15
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	96.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	96.12
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	96.1
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	96.09
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	96.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	96.05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	95.98
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	95.95
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	95.94
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	95.89
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	95.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	95.86
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	95.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	95.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.83
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	95.82
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	95.68
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	95.44
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	95.35
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	95.31
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	95.27
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	95.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	94.85
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	94.84
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.59
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	94.57
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	94.42
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	93.74
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	93.7
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	93.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.36
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	93.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	92.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	92.66
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	91.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	90.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.58
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	88.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	87.08
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	82.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	82.4

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.87  E-value=3.3e-22  Score=188.64  Aligned_cols=144  Identities=17%  Similarity=0.127  Sum_probs=106.9

Q ss_pred             cEEEecCCCCCCcccCCCCceeecCCcccccCCCcc----ccccccccccccccceeeeeeCCCCceeEEecCCCCCccc
Q 008008           64 DISIDCGVPAGFMYLDEKTQLSYKSDEEFIRTGVNK----NISSKFMSANLQNTYATVRSFPEGNRNCYSLRPPEGKAKT  139 (581)
Q Consensus        64 f~~IdCG~~~~~~~~D~~~~~~w~~D~~~~~~g~~~----~i~~~~~~~~~~~~y~t~R~f~~~~~~~Y~~~v~~~~~~~  139 (581)
                      -++||||++..   +| ..+|+|.+|..|...|...    .+......+.++.+|+|||+|+.  ..+|.||+.+++  +
T Consensus         7 ~~~INcGg~~~---~d-~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~--~~tY~f~v~~~G--~   78 (174)
T 2jwp_A            7 IWAVNAGGESH---VD-VHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED--SFGYDIPIKEEG--E   78 (174)
T ss_dssp             EEEEEETSSSE---EE-TTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS--CEEEEEECCSCE--E
T ss_pred             EEEEECCCCCc---cC-CCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC--CeEEEEEeCCCe--E
Confidence            58999998753   45 3799999998775333221    11111112335679999999985  479999999877  9


Q ss_pred             EEEEEEeecCCCCCCCCCceEEEEEcceeeEEEEec-----CCCccEEEEEEEEc-------------cCCcEEEEEeeC
Q 008008          140 YLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFD-----NASHVVIKEIIHSA-------------LMDEINVCLLNT  201 (581)
Q Consensus       140 ylVRl~F~~~~yd~~~~~~~F~v~i~~~~~~~v~~~-----~~~~~~~~E~i~~~-------------~~~~l~v~l~~~  201 (581)
                      |+||||||+..+...++ ++|||++++. -..-+++     +...++++||.+.+             .++.|.|+|.|.
T Consensus        79 Y~VrLhF~ei~~~~~~~-rvFdV~ing~-~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~  156 (174)
T 2jwp_A           79 YVLVLKFAEVYFAQSQQ-KVFDVRVNGH-TVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKG  156 (174)
T ss_dssp             EEEEEEEECCSCCCSSS-SCEEEEETTE-EEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECS
T ss_pred             EEEEEEEeccccCCCCC-eEeEEEECCE-EeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEecc
Confidence            99999999988887776 9999999983 2222332     23568899998874             567799999987


Q ss_pred             CCCCceeeeeeeeecC
Q 008008          202 GKGTPFISALELRHFH  217 (581)
Q Consensus       202 ~~~~pfIn~iEi~~l~  217 (581)
                      ....||||||||++-.
T Consensus       157 ~~~~a~inaIEI~~~~  172 (174)
T 2jwp_A          157 YYDNPKVCALFIMKGT  172 (174)
T ss_dssp             SSCSSSEEEEEEESSC
T ss_pred             CCCCcEEEEEEEEeCc
Confidence            6788999999999753

>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*

Probab=99.82  E-value=3.1e-21  Score=181.94  Aligned_cols=147  Identities=15%  Similarity=0.130  Sum_probs=101.5

Q ss_pred             eeEEeeecCCCCCccccCCCCCCCCccCCCCCCCC-Ceeee-cceeeeccCCCCCCchHHHHHhcccCCCCCcceEEEEe
Q 008008          229 VLYRRLDVGSTTTQIIRFKDDHYDRIWVPYPGFPG-SASIN-TSFIIDSLVDSQYRLPSAVMKTAVKPMNVNDSLDFDFE  306 (581)
Q Consensus       229 ~~~~Rin~G~~~~~~ir~~~D~~dR~W~~d~~~~~-~~~~s-t~~~i~~~~~~~~~~P~~Vy~TA~~~~~~~~~~~~t~~  306 (581)
                      ++++||||||+.   +.   |..+|+|.+|. .+. ....+ ....+.  ....+.+|..||||||.+..     +++|.
T Consensus         5 ~~~~~INcGg~~---~~---d~~gr~w~~D~-~~~~~g~~~~~~~~~~--~~~~~~~~~~lY~TaR~~~~-----~~tY~   70 (174)
T 2jwp_A            5 KVIWAVNAGGES---HV---DVHGIHYRKDP-LEGRVGRASDYGMKLP--ILRSNPEDQVLYQTERYNED-----SFGYD   70 (174)
T ss_dssp             HEEEEEEETSSS---EE---ETTTEEECSSC-SSTTCCCCCCCCTTSC--CSSSCHHHHHTTTCCCCCCS-----CEEEE
T ss_pred             cEEEEEECCCCC---cc---CCCCCEEcCCc-CcccCCcccccccceE--ecccCCCCchhhhhhccCCC-----CeEEE
Confidence            578999999975   22   66899999997 321 11111 000111  12235678999999999763     45676


Q ss_pred             -cCCCCccEEEEEEeeeccccCCCCeEEEEEEECCEEecccccc-------cceeeeeEEeee----------cCCCCeE
Q 008008          307 -IGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVP-------EYLQSKTISSTQ----------PARGSKL  368 (581)
Q Consensus       307 -~~~~~~~y~vrLhF~ei~~~~~~~~R~F~V~ing~~~~~~~~p-------~~~~~~~v~~~~----------~~~~~~~  368 (581)
                       ++++++.|+|||||||+.....++ |+|+|+|||+.+.++|++       ..+.+++.+.+.          .+..+.+
T Consensus        71 f~v~~~G~Y~VrLhF~ei~~~~~~~-rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L  149 (174)
T 2jwp_A           71 IPIKEEGEYVLVLKFAEVYFAQSQQ-KVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKL  149 (174)
T ss_dssp             EECCSCEEEEEEEEEECCSCCCSSS-SCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEE
T ss_pred             EEeCCCeEEEEEEEEeccccCCCCC-eEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeE
Confidence             467789999999999998766777 999999999999876652       123355544321          1245789


Q ss_pred             EEEEeecCCCCcChHHHHHHhhhh
Q 008008          369 NFSLCKTSNSTLPPILNAIEIYIL  392 (581)
Q Consensus       369 ~isl~~t~~s~lp~~ln~le~~~l  392 (581)
                      +|+|.|...  ..|+|||||+++-
T Consensus       150 ~I~f~p~~~--~~a~inaIEI~~~  171 (174)
T 2jwp_A          150 SVEFVKGYY--DNPKVCALFIMKG  171 (174)
T ss_dssp             EEEEECSSS--CSSSEEEEEEESS
T ss_pred             EEEEeccCC--CCcEEEEEEEEeC
Confidence            999997533  3499999998763

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.10  E-value=4.1e-11  Score=122.80  Aligned_cols=114  Identities=28%  Similarity=0.484  Sum_probs=91.3

Q ss_pred             CCCcchhhhhhhhhhhccC---CCCCCC--CCCCCCcccccCccCCCCCCCCCceeEeecCCCCCce--ecchhhhcccC
Q 008008          399 PTDQDDVNAIMDIKLSYDL---GKGWQG--DPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTG--KISPSLSNLKS  471 (581)
Q Consensus       399 ~t~~~d~~aL~~~k~~~~~---~~~W~g--~pC~~~~~~W~Gv~C~~~~~~~~~l~~l~Ls~n~l~G--~ip~~l~~l~~  471 (581)
                      .|.++|.+||+++|..+..   ..+|..  ++|.   +.|.||.|+... ...+|+.|+|++|+++|  .+|..+.+++.
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~-~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~   77 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC-CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence            3677899999999988752   457863  5562   249999997532 12579999999999998  88999999999


Q ss_pred             CCeEeCCC-CCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          472 LENLDLSN-NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       472 L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      |+.|+|++ |++.|.+|..++++++|++|+|++|+++|.+|..+..
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~  123 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ  123 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence            99999994 8898889988888888888888888888888876644

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.03  E-value=7.6e-11  Score=136.85  Aligned_cols=103  Identities=17%  Similarity=0.335  Sum_probs=86.3

Q ss_pred             CcchhhhhhhhhhhccCCCCCCCCC----CCCCcccc------------cCccCCCCCCCCCceeEeecCCCCCceecch
Q 008008          401 DQDDVNAIMDIKLSYDLGKGWQGDP----CSPMYYSW------------DGLNCSYNGYKPPKIISLNLTSEGLTGKISP  464 (581)
Q Consensus       401 ~~~d~~aL~~~k~~~~~~~~W~g~p----C~~~~~~W------------~Gv~C~~~~~~~~~l~~l~Ls~n~l~G~ip~  464 (581)
                      ...|..||+++|..+... +|+.+.    +.|..|.|            .||.|+..    .+|+.|+|++++|.|.+|+
T Consensus       267 ~~~d~~ALl~~k~~l~~~-~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~----~~V~~L~Ls~~~L~G~ip~  341 (876)
T 4ecn_A          267 YIKDYKALKAIWEALDGK-NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN----GRVTGLSLAGFGAKGRVPD  341 (876)
T ss_dssp             HHHHHHHHHHHHHHTTGG-GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT----SCEEEEECTTTCCEEEECG
T ss_pred             chHHHHHHHHHHHHcCCC-CCCcCCCcccccCCccccccccccccccCcCceEecCC----CCEEEEECccCCCCCcCch
Confidence            346899999999887543 786322    22223589            99999863    5899999999999999999


Q ss_pred             hhhcccCCCeEeC-CCCCCCCC----------------------------------------------------------
Q 008008          465 SLSNLKSLENLDL-SNNSLTGS----------------------------------------------------------  485 (581)
Q Consensus       465 ~l~~l~~L~~L~L-s~N~l~G~----------------------------------------------------------  485 (581)
                      .+++|+.|+.|+| ++|.++|.                                                          
T Consensus       342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~  421 (876)
T 4ecn_A          342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS  421 (876)
T ss_dssp             GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred             HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence            9999999999999 77766555                                                          


Q ss_pred             ------------------ccccccCCCccccccccCccCCC
Q 008008          486 ------------------IPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       486 ------------------iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                                        ||..++++++|+.|+|++|+|+|
T Consensus       422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg  462 (876)
T 4ecn_A          422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY  462 (876)
T ss_dssp             CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCG
T ss_pred             ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCC
Confidence                              89999999999999999999999

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.90  E-value=4.9e-10  Score=126.14  Aligned_cols=98  Identities=21%  Similarity=0.391  Sum_probs=80.3

Q ss_pred             chhhhhhhhhhhcc------------CCCCCCCC-CCCCCcccc---cCccCCCCCCCCCceeEeecCCCCCceecchhh
Q 008008          403 DDVNAIMDIKLSYD------------LGKGWQGD-PCSPMYYSW---DGLNCSYNGYKPPKIISLNLTSEGLTGKISPSL  466 (581)
Q Consensus       403 ~d~~aL~~~k~~~~------------~~~~W~g~-pC~~~~~~W---~Gv~C~~~~~~~~~l~~l~Ls~n~l~G~ip~~l  466 (581)
                      .|..||.+++..+.            ...+|..+ +|    |.|   .||.|+..    .+|+.|+|++++++|.+|+.+
T Consensus        30 ~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~----c~w~~~~GV~C~~~----~~V~~L~L~~~~l~g~lp~~l  101 (636)
T 4eco_A           30 KDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSN----GRVTGLSLEGFGASGRVPDAI  101 (636)
T ss_dssp             HHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG----GGTTCCTTEEECTT----CCEEEEECTTSCCEEEECGGG
T ss_pred             HHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc----ccccCCCCeEEcCC----CCEEEEEecCcccCCcCChHH
Confidence            46777777776543            12257532 22    489   99999764    589999999999999999999


Q ss_pred             hcccCCCeEeCCCCC-----------------------------------------------------------------
Q 008008          467 SNLKSLENLDLSNNS-----------------------------------------------------------------  481 (581)
Q Consensus       467 ~~l~~L~~L~Ls~N~-----------------------------------------------------------------  481 (581)
                      ++|+.|+.|+|++|+                                                                 
T Consensus       102 ~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  181 (636)
T 4eco_A          102 GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI  181 (636)
T ss_dssp             GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCC
T ss_pred             hcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccccc
Confidence            999999999999884                                                                 


Q ss_pred             -------------CCCCccccccCCCccccccccCccCCCC
Q 008008          482 -------------LTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       482 -------------l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                                   ++| ||..++++++|++|+|++|+|+|.
T Consensus       182 ~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~  221 (636)
T 4eco_A          182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAE  221 (636)
T ss_dssp             CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGG
T ss_pred             chhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccc
Confidence                         445 899999999999999999999996

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.76  E-value=2.4e-09  Score=123.14  Aligned_cols=105  Identities=28%  Similarity=0.403  Sum_probs=78.2

Q ss_pred             CCcchhhhhhhhhhhcc---CCCCCC-CCCCCCCcccccCccCCCCCCCCCceeEeecCCCCCcee---cch--------
Q 008008          400 TDQDDVNAIMDIKLSYD---LGKGWQ-GDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGK---ISP--------  464 (581)
Q Consensus       400 t~~~d~~aL~~~k~~~~---~~~~W~-g~pC~~~~~~W~Gv~C~~~~~~~~~l~~l~Ls~n~l~G~---ip~--------  464 (581)
                      ..++|.+||++||+.+.   ...+|. +..|    |.|.||.|+.     .+|+.|+|+++++.|.   +|+        
T Consensus         9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~----C~w~gv~C~~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNP----CTFDGVTCRD-----DKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG----GGSTTEEEET-----TEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             CCHHHHHHHHHHHhhCCCcccccCCCCCCCC----cCCcceEECC-----CcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            35678999999998764   356896 3333    4899999972     4788888888888876   543        


Q ss_pred             ---------------hhhcccCCCeEeCCCCCCCCCccc--cccCCCccccccccCccCCCCCchH
Q 008008          465 ---------------SLSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       465 ---------------~l~~l~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                                     .++.+++|++|||++|.++|.+|.  .++++++|++|+|++|.+.+.+|..
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  145 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS  145 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence                           455667777788888888777777  7777777777777777777776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.56  E-value=1.1e-09  Score=119.21  Aligned_cols=129  Identities=20%  Similarity=0.217  Sum_probs=84.3

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC-CCCchHHHhhcc----
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS-GSVPTSLVARSQ----  519 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~-G~iP~~l~~~~~----  519 (581)
                      .+.++.|+|++|.+++ +|+.+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+. +.+|..+.....    
T Consensus       190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l  267 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV  267 (487)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHH
T ss_pred             CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEE
Confidence            3679999999999997 56679999999999999999995 8999999999999999999998 555544321100    


Q ss_pred             --------CCcceEE----------eeccCCceeeeeeeecCCceEEEEeecc--CCCCChHHHHHHHHHHhc--CCCcc
Q 008008          520 --------NGSLLLR----------ILGKGGFGTVYHGYLADGSEVAIKMLSA--SSSQGPKQFRTEVELIDY--YKNLS  577 (581)
Q Consensus       520 --------~~~~~l~----------~iG~g~fg~Vykg~l~~g~~VAVK~l~~--~~~~~~~ef~~Ei~~l~~--H~NlV  577 (581)
                              .+.....          .++.+..+.+|.+.     .+++|+...  ...++.++|.+|+++|++  |||||
T Consensus       268 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~g~~eF~~Eve~L~~i~HrNLV  342 (487)
T 3oja_A          268 AKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR-----LIALKRKEHALLSGQGSETERLECERENQARQREID  342 (487)
T ss_dssp             HHHHHHHHTSSSSCCCSSTTCEEETTEEECCCSCHHHHH-----HHHHHHHHHCSCC-----CHHHHHHHHHHHHHHHHH
T ss_pred             eccccccccCCCcccccCCccccccccccccccchhhhH-----HHHHHHHhhhhcccccHHHHHHHHHHHhcccccchh
Confidence                    0000000          01111122222211     223333321  235678899999999999  99999


Q ss_pred             ccc
Q 008008          578 PTY  580 (581)
Q Consensus       578 ~l~  580 (581)
                      +|+
T Consensus       343 ~L~  345 (487)
T 3oja_A          343 ALK  345 (487)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.55  E-value=1.1e-08  Score=105.31  Aligned_cols=117  Identities=18%  Similarity=0.311  Sum_probs=81.8

Q ss_pred             CCCcchhhhhhhhhhhcc-CCC----CCC-CCCCCCCcccccCccCCCC-----CCCCCceeEeecCCCCCceecchhhh
Q 008008          399 PTDQDDVNAIMDIKLSYD-LGK----GWQ-GDPCSPMYYSWDGLNCSYN-----GYKPPKIISLNLTSEGLTGKISPSLS  467 (581)
Q Consensus       399 ~t~~~d~~aL~~~k~~~~-~~~----~W~-g~pC~~~~~~W~Gv~C~~~-----~~~~~~l~~l~Ls~n~l~G~ip~~l~  467 (581)
                      ....++..+|+++|..+. ...    .|. ...|.+..|.|.|+.|...     .....+|+.|+|++|+++ .+|..+.
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~  101 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF  101 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence            345678899999998663 222    452 1122333458999999521     001256888888888887 7788888


Q ss_pred             cccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhc
Q 008008          468 NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS  518 (581)
Q Consensus       468 ~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  518 (581)
                      +++.|+.|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..+....
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~  150 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLN  150 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCc
Confidence            8888888888888888 78888888888888888888887 7777665433

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.54  E-value=4.2e-08  Score=101.38  Aligned_cols=54  Identities=30%  Similarity=0.489  Sum_probs=47.3

Q ss_pred             eeccCCceeeeeeeec------CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|++.      +++.||||+++..+.+..++|.+|+++|++  |||||+|+
T Consensus        48 ~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~  109 (329)
T 4aoj_A           48 ELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFF  109 (329)
T ss_dssp             EEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            7999999999999874      467899999987665667889999999999  99999986

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=98.52  E-value=6.2e-08  Score=99.16  Aligned_cols=56  Identities=32%  Similarity=0.358  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCcccccC
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTYF  581 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~~  581 (581)
                      +.||+|+||.||+|.+.      +++.||||+++.... ...++|.+|+++|++  |||||+|++
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g   96 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLG   96 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcce
Confidence            37999999999999973      467899999976543 345789999999999  999999863

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=98.52  E-value=4.6e-08  Score=99.66  Aligned_cols=55  Identities=35%  Similarity=0.515  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|++.      ++..||||+++..+.+..++|.+|+++|++  |||||+++
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~   81 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFY   81 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEE
Confidence            37999999999999874      467899999987665567899999999999  99999986

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.49  E-value=8.5e-08  Score=110.16  Aligned_cols=74  Identities=30%  Similarity=0.516  Sum_probs=68.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhcc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQ  519 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  519 (581)
                      ..++.|+|++|.++|.+|..+++++.|+.|+|++|+++|.+|..++.++.|+.|||++|+++|.||..+.....
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~  705 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM  705 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999988866543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.40  E-value=3.2e-07  Score=85.12  Aligned_cols=81  Identities=27%  Similarity=0.304  Sum_probs=64.3

Q ss_pred             ccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCc
Q 008008          431 YSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN  504 (581)
Q Consensus       431 ~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  504 (581)
                      |.|..+.|+.....      +..++.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            56888888765422      356888999999998877888889999999999999998666666788899999999999


Q ss_pred             cCCCCCc
Q 008008          505 KLSGSVP  511 (581)
Q Consensus       505 ~l~G~iP  511 (581)
                      +|++-.|
T Consensus        89 ~l~~~~~   95 (170)
T 3g39_A           89 QLKSIPR   95 (170)
T ss_dssp             CCCCCCT
T ss_pred             ccCEeCH
Confidence            9885433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.32  E-value=7.6e-07  Score=84.39  Aligned_cols=84  Identities=30%  Similarity=0.366  Sum_probs=66.9

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      .|.|..+.|+..+..      +..++.|+|++|.++ .+|..+..++.|+.|+|++|++++..|..+..++.|+.|+|++
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            356777888765422      357888999999987 7888889999999999999999977777888899999999999


Q ss_pred             ccCCCCCchHH
Q 008008          504 NKLSGSVPTSL  514 (581)
Q Consensus       504 N~l~G~iP~~l  514 (581)
                      |++++-.|..+
T Consensus        88 N~l~~i~~~~f   98 (193)
T 2wfh_A           88 NRLRCIPPRTF   98 (193)
T ss_dssp             SCCCBCCTTTT
T ss_pred             CccCEeCHHHh
Confidence            99886555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.29  E-value=8.1e-07  Score=91.65  Aligned_cols=83  Identities=23%  Similarity=0.288  Sum_probs=69.7

Q ss_pred             ccccCccCCCC-CCC-------CCceeEeecCC-CCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccc
Q 008008          431 YSWDGLNCSYN-GYK-------PPKIISLNLTS-EGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNL  501 (581)
Q Consensus       431 ~~W~Gv~C~~~-~~~-------~~~l~~l~Ls~-n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~l  501 (581)
                      |.|..|.|+.. +..       ..+++.|+|++ |.|++..+..|..|++|+.|+|++|+|+|..|..+..+++|+.|+|
T Consensus         8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A            8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            57888999876 321       24588999996 9999877788999999999999999999988889999999999999


Q ss_pred             cCccCCCCCchHH
Q 008008          502 DGNKLSGSVPTSL  514 (581)
Q Consensus       502 s~N~l~G~iP~~l  514 (581)
                      ++|+|++ +|..+
T Consensus        88 ~~N~l~~-~~~~~   99 (347)
T 2ifg_A           88 SFNALES-LSWKT   99 (347)
T ss_dssp             CSSCCSC-CCSTT
T ss_pred             CCCccce-eCHHH
Confidence            9999984 55443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.28  E-value=8.6e-07  Score=86.27  Aligned_cols=79  Identities=24%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             ccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCc
Q 008008          431 YSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN  504 (581)
Q Consensus       431 ~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  504 (581)
                      |.|.+|.|+..+..      ++.++.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus        19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            48999999865432      456888899999888877777888888888888888886444455677888888888888


Q ss_pred             cCCCC
Q 008008          505 KLSGS  509 (581)
Q Consensus       505 ~l~G~  509 (581)
                      ++++-
T Consensus        99 ~l~~l  103 (229)
T 3e6j_A           99 QLTVL  103 (229)
T ss_dssp             CCCCC
T ss_pred             cCCcc
Confidence            88743

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.27  E-value=9.5e-07  Score=82.02  Aligned_cols=83  Identities=25%  Similarity=0.322  Sum_probs=67.5

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      .|.|.++.|...+..      ++.++.|+|++|++++..+..+..++.|+.|+|++|++++..|..+..+++|+.|++++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            368999999765432      45789999999999866556678999999999999999966666678999999999999


Q ss_pred             ccCCCCCch
Q 008008          504 NKLSGSVPT  512 (581)
Q Consensus       504 N~l~G~iP~  512 (581)
                      |++++-.+.
T Consensus        86 N~l~~~~~~   94 (177)
T 2o6r_A           86 NKLQSLPNG   94 (177)
T ss_dssp             SCCCCCCTT
T ss_pred             CCccccCHH
Confidence            999854443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.24  E-value=8.3e-07  Score=83.91  Aligned_cols=85  Identities=25%  Similarity=0.306  Sum_probs=63.9

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecch-hhhcccCCCeEeCCCCCCCCCccccccCCCcccccccc
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLD  502 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~-~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls  502 (581)
                      .|.|..+.|+..+..      +..++.|+|++|.+++..+. .+..++.|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus         7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A            7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            357888888765421      34678888888888765443 37888888888888888888888888888888888888


Q ss_pred             CccCCCCCchHH
Q 008008          503 GNKLSGSVPTSL  514 (581)
Q Consensus       503 ~N~l~G~iP~~l  514 (581)
                      +|++++..|..+
T Consensus        87 ~N~l~~~~~~~~   98 (192)
T 1w8a_A           87 ENKIKEISNKMF   98 (192)
T ss_dssp             SCCCCEECSSSS
T ss_pred             CCcCCccCHHHh
Confidence            888886555444

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=98.21  E-value=1e-06  Score=91.45  Aligned_cols=56  Identities=23%  Similarity=0.333  Sum_probs=48.9

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +..||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|++  |||||+|+
T Consensus        79 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~  137 (346)
T 4fih_A           79 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY  137 (346)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            44799999999999996 4689999999976666667789999999999  99999986

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.19  E-value=1.7e-06  Score=82.40  Aligned_cols=80  Identities=26%  Similarity=0.328  Sum_probs=60.4

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      .|.|.+|.|...+..      +++++.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|++|++++
T Consensus         6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            368999999765432      45688888888888865555577888888888888888855555567788888888888


Q ss_pred             ccCCCC
Q 008008          504 NKLSGS  509 (581)
Q Consensus       504 N~l~G~  509 (581)
                      |++++-
T Consensus        86 n~l~~~   91 (208)
T 2o6s_A           86 NQLQSL   91 (208)
T ss_dssp             SCCCCC
T ss_pred             CcCCcc
Confidence            888743

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=98.17  E-value=1.5e-06  Score=88.81  Aligned_cols=53  Identities=32%  Similarity=0.515  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|++.+  .||||.++....  +..++|.+|+++|++  |||||+++
T Consensus        42 ~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~   98 (307)
T 3omv_A           42 TRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFM   98 (307)
T ss_dssp             EECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            379999999999999864  599999974432  235789999999999  99999986

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.16  E-value=2.4e-06  Score=79.60  Aligned_cols=81  Identities=23%  Similarity=0.320  Sum_probs=62.0

Q ss_pred             cccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCcc
Q 008008          432 SWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK  505 (581)
Q Consensus       432 ~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~  505 (581)
                      ....+.|+.....      +..++.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            3444666554321      3568889999999998778889999999999999999986545556889999999999999


Q ss_pred             CCCCCchH
Q 008008          506 LSGSVPTS  513 (581)
Q Consensus       506 l~G~iP~~  513 (581)
                      +++ +|..
T Consensus        93 l~~-l~~~   99 (174)
T 2r9u_A           93 LKS-IPRG   99 (174)
T ss_dssp             CCC-CCTT
T ss_pred             cce-eCHH
Confidence            984 5544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.15  E-value=1.1e-06  Score=82.97  Aligned_cols=70  Identities=21%  Similarity=0.304  Sum_probs=60.5

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .++++.|+|++|.+++..+..+..+++|+.|+|++|++++.+|..+..+++|+.|+|++|.+++..+...
T Consensus        77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~  146 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW  146 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred             cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence            3678899999999988777778889999999999999998888888899999999999999998877543

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=98.14  E-value=1.5e-06  Score=88.48  Aligned_cols=55  Identities=24%  Similarity=0.433  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++- .+|..||||+++....+ ..+.|.+|+++|++  |||||+++
T Consensus        11 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~   69 (299)
T 4g31_A           11 QCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYF   69 (299)
T ss_dssp             EEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            4799999999999985 57889999999754332 34679999999999  99999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.13  E-value=2.4e-06  Score=87.76  Aligned_cols=74  Identities=22%  Similarity=0.254  Sum_probs=65.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhcc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQ  519 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  519 (581)
                      +.++.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.|++++|++.|.+|..+.....
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            56889999999999999999999999999999999999999999999999999999999999999988766544

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=98.13  E-value=1.9e-06  Score=87.23  Aligned_cols=54  Identities=30%  Similarity=0.431  Sum_probs=45.1

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.. ..+..||||++.....  ...+.|.+|+++|++  |||||+++
T Consensus        33 ~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~   91 (290)
T 3fpq_A           33 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY   91 (290)
T ss_dssp             EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            689999999999996 4578999999964422  234679999999999  99999985

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=98.13  E-value=2.3e-06  Score=91.08  Aligned_cols=56  Identities=23%  Similarity=0.333  Sum_probs=49.2

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +..||+|+||.||+|+. .+|+.||||+++.......+.+.+|+++|++  |||||+|+
T Consensus       156 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~  214 (423)
T 4fie_A          156 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMY  214 (423)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceE
Confidence            45799999999999996 5689999999987666667789999999999  99999986

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.11  E-value=2.2e-06  Score=82.82  Aligned_cols=84  Identities=30%  Similarity=0.434  Sum_probs=57.8

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      .|.|..+.|...+..      +..++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            357788888765421      34577777777777765555677777777777777777766677777777777777777


Q ss_pred             ccCCCCCchHH
Q 008008          504 NKLSGSVPTSL  514 (581)
Q Consensus       504 N~l~G~iP~~l  514 (581)
                      |+++ .+|..+
T Consensus        90 N~l~-~l~~~~   99 (220)
T 2v9t_B           90 NKIT-ELPKSL   99 (220)
T ss_dssp             SCCC-CCCTTT
T ss_pred             CcCC-ccCHhH
Confidence            7776 455443

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=98.07  E-value=1.5e-06  Score=88.52  Aligned_cols=50  Identities=30%  Similarity=0.480  Sum_probs=39.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHH--HHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFR--TEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~--~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|++ +|+.||||+++..   ..+++.  +|+..+++  |||||+++
T Consensus        10 ~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~---~~~~~~~e~Ei~~~~~l~HpNIv~l~   63 (303)
T 3hmm_A           10 SIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFI   63 (303)
T ss_dssp             EEEECSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEE
T ss_pred             EEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhhHHHHHHHHHHhcCCCCCCCcEE
Confidence            799999999999998 4789999999643   234444  45555566  99999986

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=98.07  E-value=2.6e-06  Score=88.50  Aligned_cols=56  Identities=25%  Similarity=0.341  Sum_probs=40.6

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+++- .+|+.||||+++.....  ..++|.+|+++|++  |||||+++
T Consensus        29 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~   89 (350)
T 4b9d_A           29 LQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYR   89 (350)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEE
Confidence            34799999999999985 57899999999654322  24679999999999  99999986

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.06  E-value=1.4e-06  Score=88.89  Aligned_cols=71  Identities=24%  Similarity=0.625  Sum_probs=57.1

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCC-ccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLP-LLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      +.++.|+|++|.+++.+|..+..+++|+.|+|++|.++|.+|..++.++ .|+.|++++|+++|.+|..+..
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence            5677888888888888888888888888888888888888888888877 7888888888888877776644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.05  E-value=3e-06  Score=90.46  Aligned_cols=85  Identities=21%  Similarity=0.244  Sum_probs=55.4

Q ss_pred             cccccC--ccCCCCCCC-----CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcc-ccccCCCccccccc
Q 008008          430 YYSWDG--LNCSYNGYK-----PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNL  501 (581)
Q Consensus       430 ~~~W~G--v~C~~~~~~-----~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~l  501 (581)
                      .|.|.+  +.|...+..     +++++.|+|++|.+++..|..+.++++|+.|+|++|.+.+.+| ..+..+++|++|+|
T Consensus         7 ~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A            7 ECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL   86 (455)
T ss_dssp             CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred             eeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence            345555  677654422     3567778888887777667677777777777777777766663 44666777777777


Q ss_pred             cCccCCCCCchHH
Q 008008          502 DGNKLSGSVPTSL  514 (581)
Q Consensus       502 s~N~l~G~iP~~l  514 (581)
                      ++|++++..|..+
T Consensus        87 s~n~l~~~~~~~~   99 (455)
T 3v47_A           87 DYNQFLQLETGAF   99 (455)
T ss_dssp             TTCTTCEECTTTT
T ss_pred             CCCccCccChhhc
Confidence            7777665555443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.00  E-value=6.5e-06  Score=79.48  Aligned_cols=68  Identities=26%  Similarity=0.256  Sum_probs=44.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                      ++++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+..
T Consensus       105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~  172 (220)
T 2v70_A          105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA  172 (220)
T ss_dssp             SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred             cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence            45666666666666655666666666666666666666666666666666666666666666655533

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=97.96  E-value=5.5e-06  Score=83.16  Aligned_cols=55  Identities=25%  Similarity=0.494  Sum_probs=42.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++- .+|+.||||.++...   ....+.|.+|+++|++  |||||+++
T Consensus        19 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~   79 (275)
T 3hyh_A           19 KTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLY   79 (275)
T ss_dssp             EEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEE
Confidence            4799999999999985 578999999996432   2335679999999999  99999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.96  E-value=5.8e-06  Score=90.40  Aligned_cols=69  Identities=22%  Similarity=0.172  Sum_probs=52.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      +.++.|+|++|.+++..|..+..+++|++|+|++|++++..|..++.+++|++|+|++|++++..|..+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~   94 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF   94 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence            467788888888877767777888888888888888877677777778888888888887776555444

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=97.94  E-value=5e-06  Score=84.92  Aligned_cols=55  Identities=27%  Similarity=0.343  Sum_probs=46.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++- .+|+.||||.++..   .....+.+.+|+++|++  |||||+++
T Consensus        38 ~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~   98 (311)
T 4aw0_A           38 KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLY   98 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            4899999999999985 57899999999642   23456789999999999  99999986

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.90  E-value=1.2e-05  Score=77.57  Aligned_cols=72  Identities=24%  Similarity=0.278  Sum_probs=60.8

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      .++++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+..
T Consensus        80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence            367889999999998777777888999999999999999888888889999999999999998776766544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.89  E-value=1.2e-05  Score=72.17  Aligned_cols=60  Identities=33%  Similarity=0.528  Sum_probs=30.1

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      +++.|+|++|.+++.  ..+..++.|+.|+|++|.+++.+|..+..+++|+.|++++|++++
T Consensus        43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~  102 (149)
T 2je0_A           43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD  102 (149)
T ss_dssp             TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCS
T ss_pred             CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCC
Confidence            445555555555433  344455555555555555554455444445555555555555543

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=97.88  E-value=7.1e-06  Score=85.40  Aligned_cols=55  Identities=24%  Similarity=0.369  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeecC------CceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD------GSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+|.+.+      ++.||||+++..... ..++|.+|+++|++   |||||+|+
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~  134 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL  134 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            479999999999998642      357999999765433 34679999999998   59999986

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=97.87  E-value=9.9e-06  Score=85.69  Aligned_cols=55  Identities=22%  Similarity=0.360  Sum_probs=45.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++- .+|+.||||+++....  ...+.+.+|+++|++  |||||+++
T Consensus        60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~  119 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIK  119 (398)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEe
Confidence            4799999999999985 5789999999965432  224678999999999  99999985

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.85  E-value=1e-05  Score=79.43  Aligned_cols=61  Identities=31%  Similarity=0.369  Sum_probs=30.0

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      .++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|+++
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  120 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK  120 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC
Confidence            4444555555554444444445555555555555555444444445555555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.85  E-value=1.8e-05  Score=73.15  Aligned_cols=67  Identities=21%  Similarity=0.209  Sum_probs=59.1

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      ..+++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..+
T Consensus        53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            3679999999999996555567899999999999999997667779999999999999999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.85  E-value=1.7e-05  Score=87.91  Aligned_cols=71  Identities=31%  Similarity=0.437  Sum_probs=58.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCC-chHHHhhcc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV-PTSLVARSQ  519 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~i-P~~l~~~~~  519 (581)
                      +.++.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+.....
T Consensus       463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence            56888899999888 788888899999999999999886 77 7888889999999999988776 777655443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.82  E-value=1.8e-05  Score=74.83  Aligned_cols=64  Identities=23%  Similarity=0.271  Sum_probs=34.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+.+.
T Consensus        78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            3455555555555544444555555555555555555533333455555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.81  E-value=7.5e-06  Score=91.88  Aligned_cols=71  Identities=24%  Similarity=0.444  Sum_probs=56.0

Q ss_pred             CceeEeecCCCCCcee-----------------cchhhh--cccCCCeEeCCCCCCCCCccccccCCCccccccccCcc-
Q 008008          446 PKIISLNLTSEGLTGK-----------------ISPSLS--NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK-  505 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~-----------------ip~~l~--~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~-  505 (581)
                      +.++.|+|++|.++|.                 +|..++  ++++|+.|+|++|++.|.+|..++++++|+.|++++|+ 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            5677888888888875                 788777  88888888888888888888888888888888888887 


Q ss_pred             CCC-CCchHHHh
Q 008008          506 LSG-SVPTSLVA  516 (581)
Q Consensus       506 l~G-~iP~~l~~  516 (581)
                      ++| .+|..+..
T Consensus       286 l~~~~lp~~~~~  297 (636)
T 4eco_A          286 ISGEQLKDDWQA  297 (636)
T ss_dssp             SCHHHHHHHHHH
T ss_pred             CccccchHHHHh
Confidence            777 77776644

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=97.81  E-value=1.4e-05  Score=81.30  Aligned_cols=54  Identities=41%  Similarity=0.711  Sum_probs=49.0

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...+|..||||++.....+..++|.+|++++++  |||||+++
T Consensus        46 ~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~  101 (321)
T 2qkw_B           46 LIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLI  101 (321)
T ss_dssp             CSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEE
T ss_pred             eeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            6899999999999988899999999987666667899999999999  99999875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.80  E-value=2.4e-05  Score=79.94  Aligned_cols=84  Identities=29%  Similarity=0.400  Sum_probs=68.9

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      .|.|..+.|+..+..      ++.++.|+|++|.+++..+..+..++.|+.|+|++|++++..|..+..+++|+.|++++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            357888888754321      45788999999999976666899999999999999999988899999999999999999


Q ss_pred             ccCCCCCchHH
Q 008008          504 NKLSGSVPTSL  514 (581)
Q Consensus       504 N~l~G~iP~~l  514 (581)
                      |+++ .+|..+
T Consensus       110 n~l~-~l~~~~  119 (330)
T 1xku_A          110 NQLK-ELPEKM  119 (330)
T ss_dssp             SCCS-BCCSSC
T ss_pred             CcCC-ccChhh
Confidence            9887 555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.80  E-value=1.3e-05  Score=71.91  Aligned_cols=67  Identities=22%  Similarity=0.267  Sum_probs=59.9

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCC-ccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGS-IPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .++++.|+|++|.+++.+|..+..+++|+.|++++|.+++. .|..++.+++|+.|++++|.+++..+
T Consensus        63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            46799999999999988888888999999999999999973 56889999999999999999986544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.80  E-value=1.7e-05  Score=72.61  Aligned_cols=67  Identities=28%  Similarity=0.334  Sum_probs=37.1

Q ss_pred             CceeEeecCCCCCc-eecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLT-GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~-G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      +.++.|+|++|.++ |.+|..+..+++|+.|+|++|.+++.  ..+..+++|+.|++++|++++.+|..+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~   91 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA   91 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH
Confidence            34555556555555 55555555555566666665555543  445555555556666555555444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.79  E-value=2.1e-05  Score=80.45  Aligned_cols=83  Identities=25%  Similarity=0.349  Sum_probs=69.0

Q ss_pred             ccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCc
Q 008008          431 YSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN  504 (581)
Q Consensus       431 ~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  504 (581)
                      |.|..+.|+..+..      .+.++.|+|++|.+++..|..+..++.|+.|+|++|++++..|..++.+++|+.|++++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            57888888765421      357899999999998777778999999999999999999888999999999999999999


Q ss_pred             cCCCCCchHH
Q 008008          505 KLSGSVPTSL  514 (581)
Q Consensus       505 ~l~G~iP~~l  514 (581)
                      ++. .+|..+
T Consensus       113 ~l~-~l~~~~  121 (332)
T 2ft3_A          113 HLV-EIPPNL  121 (332)
T ss_dssp             CCC-SCCSSC
T ss_pred             cCC-ccCccc
Confidence            887 666544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.78  E-value=2.7e-05  Score=75.04  Aligned_cols=66  Identities=26%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      ++++.|+|++|.++...+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++-.+
T Consensus        80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            567777777777764333335667777777777777777667777777777777777777775433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.76  E-value=1.5e-05  Score=90.94  Aligned_cols=69  Identities=23%  Similarity=0.312  Sum_probs=63.4

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      ...++.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .||..++.|++|+.|+|++|.|+|.+|..+.
T Consensus       269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            357999999999999 88999999999999999999997 8999999999999999999999999887763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.75  E-value=3.3e-05  Score=74.93  Aligned_cols=64  Identities=30%  Similarity=0.349  Sum_probs=51.6

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .++++.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++-
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence            357888888888888655556778888888888888888 7888888888888888888888743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.74  E-value=1.7e-05  Score=90.56  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=50.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCC-ccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLP-LLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~ls~N~l~G~iP~~l  514 (581)
                      ..++.|+|++|.|+ .||..|+.|++|+.|+|++|.|+|.+|..+..+. .+..++|++|.++|.+|..+
T Consensus       293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l  361 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER  361 (727)
T ss_dssp             TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence            46778888888876 6777788888888888888888888887765543 23346788888888888754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.73  E-value=3e-05  Score=71.70  Aligned_cols=67  Identities=24%  Similarity=0.278  Sum_probs=55.0

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .+.++.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+..|
T Consensus        75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            3578899999999987666667888999999999999985555556788999999999999998876

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=97.72  E-value=3.5e-05  Score=78.58  Aligned_cols=55  Identities=25%  Similarity=0.327  Sum_probs=49.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|... +|+.||||+++....+..+.|.+|++++++  |||||+++
T Consensus        51 ~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~  108 (321)
T 2c30_A           51 VKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMY  108 (321)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            37999999999999975 789999999987766777889999999999  99999875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=97.71  E-value=3.8e-05  Score=77.80  Aligned_cols=55  Identities=22%  Similarity=0.403  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. +|..||||+++.... ...+.|.+|+++|++  |||||+++
T Consensus        12 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~   70 (332)
T 3qd2_B           12 QCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYF   70 (332)
T ss_dssp             EEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEE
T ss_pred             eEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            47999999999999975 789999999975433 345789999999999  99999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.71  E-value=2.5e-05  Score=86.34  Aligned_cols=70  Identities=23%  Similarity=0.200  Sum_probs=58.4

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .+.++.|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+
T Consensus       493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l  562 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  562 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred             ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence            3568888888888888878888888888889998888888778888888888888888888887766554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.70  E-value=2.7e-05  Score=86.09  Aligned_cols=78  Identities=23%  Similarity=0.229  Sum_probs=61.4

Q ss_pred             CccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          435 GLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       435 Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .+.|...+..      +..++.|+|++|.+++..|..|.++++|+.|||++|++++..|..+..+++|++|+|++|++++
T Consensus        35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~  114 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS  114 (635)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence            3568754422      4578999999999987666689999999999999999986666678889999999999998874


Q ss_pred             CCchH
Q 008008          509 SVPTS  513 (581)
Q Consensus       509 ~iP~~  513 (581)
                       +|..
T Consensus       115 -l~~~  118 (635)
T 4g8a_A          115 -LALG  118 (635)
T ss_dssp             -ECGG
T ss_pred             -CCHH
Confidence             5544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=1.2e-05  Score=93.17  Aligned_cols=72  Identities=28%  Similarity=0.400  Sum_probs=58.7

Q ss_pred             CCceeEeecCCCCCce-----------------ecchhhh--cccCCCeEeCCCCCCCCCccccccCCCccccccccCcc
Q 008008          445 PPKIISLNLTSEGLTG-----------------KISPSLS--NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK  505 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G-----------------~ip~~l~--~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~  505 (581)
                      .++++.|+|++|.++|                 .+|..++  ++++|+.|+|++|++.|.+|..++++++|+.|+|++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            3567888888888887                 4888877  88888888888888888888888888888888888887


Q ss_pred             -CCC-CCchHHHh
Q 008008          506 -LSG-SVPTSLVA  516 (581)
Q Consensus       506 -l~G-~iP~~l~~  516 (581)
                       ++| .+|..+..
T Consensus       527 ~lsg~~iP~~i~~  539 (876)
T 4ecn_A          527 GISAAQLKADWTR  539 (876)
T ss_dssp             TSCHHHHHHHHHH
T ss_pred             CcccccchHHHHh
Confidence             888 78877654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.69  E-value=4.2e-05  Score=71.01  Aligned_cols=67  Identities=22%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      ..+++.|+|++|.|++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+....+
T Consensus        56 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            3679999999999997444457899999999999999996555568999999999999999986543

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=97.69  E-value=2.2e-05  Score=81.02  Aligned_cols=49  Identities=22%  Similarity=0.247  Sum_probs=41.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+++- .+|+.||||+++....     +.+|+++|++  |||||+++
T Consensus        65 ~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~  116 (336)
T 4g3f_A           65 RVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLY  116 (336)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEE
T ss_pred             EeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEE
Confidence            699999999999996 5689999999965322     2479999999  99999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=97.66  E-value=4e-05  Score=79.04  Aligned_cols=67  Identities=27%  Similarity=0.292  Sum_probs=51.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                      +.++.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|++|++++|++++ +|..
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~  118 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSS  118 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHH
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHh
Confidence            467888888888876555578888888888888888887667778888888888888888873 5544

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=97.65  E-value=4.7e-05  Score=81.70  Aligned_cols=54  Identities=24%  Similarity=0.390  Sum_probs=47.8

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|...++..||||+++... ...++|.+|+++|++  |||||+++
T Consensus       194 ~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~  249 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLH  249 (454)
T ss_dssp             EEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEE
Confidence            3799999999999999888999999997543 457899999999999  99999875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.63  E-value=3.7e-05  Score=82.25  Aligned_cols=79  Identities=25%  Similarity=0.351  Sum_probs=63.1

Q ss_pred             ccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccC
Q 008008          433 WDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       433 W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  506 (581)
                      |..+.|...+..      ++.++.|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            556778765421      45788899999999887788888999999999999999877778888888899999998888


Q ss_pred             CCCCch
Q 008008          507 SGSVPT  512 (581)
Q Consensus       507 ~G~iP~  512 (581)
                      ++ +|.
T Consensus       136 ~~-~~~  140 (452)
T 3zyi_A          136 TV-IPS  140 (452)
T ss_dssp             SB-CCT
T ss_pred             Cc-cCh
Confidence            74 443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.63  E-value=4.8e-05  Score=75.43  Aligned_cols=63  Identities=27%  Similarity=0.295  Sum_probs=43.6

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      ..++.|+|++|.+++..+..+..+++|+.|+|++|+++...+..+..+++|+.|++++|++++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~   99 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA   99 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCc
Confidence            457778888888775545567777777888887777774333444667777777777777763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.63  E-value=2.7e-05  Score=86.31  Aligned_cols=70  Identities=23%  Similarity=0.172  Sum_probs=51.7

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      +..++.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+..+++|++|+|++|++.+..|..+
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL  101 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence            3567778888888777667777777778888888777777667777777777777777777776555444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.62  E-value=5.9e-05  Score=73.93  Aligned_cols=66  Identities=26%  Similarity=0.324  Sum_probs=50.7

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV  510 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~i  510 (581)
                      .+.++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..
T Consensus       130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred             CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence            356788888888887655556778888888888888888766667778888888888888887763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.62  E-value=4.3e-05  Score=84.60  Aligned_cols=65  Identities=31%  Similarity=0.360  Sum_probs=60.2

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCc-cccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSI-PEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~i-P~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .+.++.|+|++|.+++ +| .++.+++|+.|+|++|++++.+ |..++.+++|+.|+|++|.+++..|
T Consensus       485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            4679999999999997 77 8999999999999999999887 9999999999999999999998765

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=97.61  E-value=3.8e-05  Score=76.85  Aligned_cols=55  Identities=31%  Similarity=0.463  Sum_probs=46.6

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++++     .++..||||+++.......++|.+|+++|++  |||||+++
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   77 (295)
T 3ugc_A           16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK   77 (295)
T ss_dssp             EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             heeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4799999999999985     3578999999976544456789999999999  99999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.61  E-value=4.3e-05  Score=84.63  Aligned_cols=69  Identities=28%  Similarity=0.242  Sum_probs=42.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .+++.|+|++|.+++..+..+.++++|+.|+|++|++++..|..+..+++|++|+|++|++++..|..+
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  100 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF  100 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence            456666666666665555566666666666666666665555556666666666666666665545443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.60  E-value=7.2e-05  Score=70.96  Aligned_cols=66  Identities=21%  Similarity=0.299  Sum_probs=43.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+..|
T Consensus       100 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             cCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            456677777777765444446667777777777777765555556667777777777777776665

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=97.60  E-value=1.2e-05  Score=82.00  Aligned_cols=55  Identities=18%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++-    ..++.||||.++...  ......|.+|+++|++  |||||+++
T Consensus        30 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~   92 (304)
T 3ubd_A           30 KVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLH   92 (304)
T ss_dssp             EEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEE
T ss_pred             EEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEE
Confidence            4899999999999974    236789999996432  2234578999999999  99999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.59  E-value=4e-05  Score=76.11  Aligned_cols=62  Identities=26%  Similarity=0.222  Sum_probs=32.5

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++.|+|++|.+++..+..+..++.|+.|+|++|++++..|..+..+++|+.|++++|++++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            35555555555554434455555555555555555554444445555555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.59  E-value=3.9e-05  Score=72.40  Aligned_cols=66  Identities=26%  Similarity=0.345  Sum_probs=34.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..++.+++|+.|++++|.+-+.+|
T Consensus        88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A           88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence            345555555555554444455555555555555555555455555555555555555554333343

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=97.58  E-value=4.3e-05  Score=77.62  Aligned_cols=54  Identities=52%  Similarity=0.801  Sum_probs=45.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++...+|..||||+++.... ....+|.+|++++++  |||||+++
T Consensus        37 ~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   93 (326)
T 3uim_A           37 ILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR   93 (326)
T ss_dssp             EEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCC
T ss_pred             eEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceE
Confidence            7899999999999988899999999975433 334579999999999  99999975

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.58  E-value=4.1e-05  Score=79.55  Aligned_cols=78  Identities=28%  Similarity=0.318  Sum_probs=52.3

Q ss_pred             ccccCccCCCCCCC------CCceeEeecCCCCCceecchhhh-cccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          431 YSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLS-NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       431 ~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      |.+..+.|...+..      +..++.|+|++|.+++..+..+. .+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            45666777654321      33466777777777765555555 677777777777777765556677777777777777


Q ss_pred             ccCCC
Q 008008          504 NKLSG  508 (581)
Q Consensus       504 N~l~G  508 (581)
                      |++++
T Consensus        98 N~l~~  102 (361)
T 2xot_A           98 NHLHT  102 (361)
T ss_dssp             SCCCE
T ss_pred             CcCCc
Confidence            77763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.58  E-value=7.7e-05  Score=74.11  Aligned_cols=66  Identities=21%  Similarity=0.302  Sum_probs=57.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|++++|.+.|..|
T Consensus       157 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          157 TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            578899999999987666667889999999999999998777778889999999999999988877

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.56  E-value=8.1e-05  Score=73.34  Aligned_cols=54  Identities=30%  Similarity=0.474  Sum_probs=47.0

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++...++..||||++... ....++|.+|++++++  |||||+++
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~   71 (269)
T 4hcu_A           16 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLY   71 (269)
T ss_dssp             EEEEECSSCEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             heecCCCccEEEEEEecCCCeEEEEEeccc-ccCHHHHHHHHHHHHhCCCCCEeeEE
Confidence            479999999999999988889999999654 2345789999999999  99999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.55  E-value=5.3e-05  Score=81.42  Aligned_cols=80  Identities=23%  Similarity=0.355  Sum_probs=58.1

Q ss_pred             cccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCcc
Q 008008          432 SWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK  505 (581)
Q Consensus       432 ~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~  505 (581)
                      .|..|.|...+..      +..++.|+|++|.+++..|..|..++.|+.|+|++|.+++..|..+..+++|+.|+|++|+
T Consensus        12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            3566777654321      3567788888888887667778888888888888888877777777788888888888887


Q ss_pred             CCCCCch
Q 008008          506 LSGSVPT  512 (581)
Q Consensus       506 l~G~iP~  512 (581)
                      ++ .+|.
T Consensus        92 l~-~~~~   97 (477)
T 2id5_A           92 LK-LIPL   97 (477)
T ss_dssp             CC-SCCT
T ss_pred             CC-ccCc
Confidence            76 3443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.55  E-value=8.4e-05  Score=73.82  Aligned_cols=69  Identities=26%  Similarity=0.294  Sum_probs=55.3

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      +.++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..|..+
T Consensus       133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (272)
T 3rfs_A          133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF  201 (272)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence            568888999998886656667888889999999999887777777888899999999998887555433

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=97.54  E-value=7.4e-05  Score=80.10  Aligned_cols=53  Identities=32%  Similarity=0.552  Sum_probs=46.9

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...++..||||.++... ...++|.+|+++|++  |||||+++
T Consensus       191 ~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~  245 (452)
T 1fmk_A          191 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLY  245 (452)
T ss_dssp             EEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEE
Confidence            789999999999999888889999997543 346789999999999  99999875

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=97.53  E-value=6e-05  Score=76.01  Aligned_cols=55  Identities=24%  Similarity=0.332  Sum_probs=47.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||+|++........++|.+|++++++  |||||+++
T Consensus        16 ~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   73 (310)
T 3s95_A           16 EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFI   73 (310)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             ceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEE
Confidence            37999999999999974 688999999865544556789999999999  99999875

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=97.53  E-value=4.1e-05  Score=84.82  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=46.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .+|..||||.++.......+.+.+|+++|++  |||||+|+
T Consensus       163 ~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~  220 (573)
T 3uto_A          163 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLH  220 (573)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEE
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEE
Confidence            4799999999999986 5688999999975544445678999999999  99999985

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=97.52  E-value=7.9e-05  Score=75.48  Aligned_cols=55  Identities=24%  Similarity=0.367  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...+|..||||+++....  ...+.+.+|++++++  |||||+++
T Consensus        27 ~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   85 (311)
T 3niz_A           27 EKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLI   85 (311)
T ss_dssp             EEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             hhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeee
Confidence            48999999999999998899999999964432  224679999999999  99999875

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=97.52  E-value=8.7e-05  Score=73.92  Aligned_cols=54  Identities=30%  Similarity=0.469  Sum_probs=45.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +||+|+||.||+|.. .++..||||.+........+.|.+|++++++  |||||+++
T Consensus        29 ~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   85 (295)
T 2clq_A           29 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYL   85 (295)
T ss_dssp             EEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEe
Confidence            789999999999995 5678999999976655567889999999999  99999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.52  E-value=6.4e-05  Score=74.95  Aligned_cols=65  Identities=32%  Similarity=0.468  Sum_probs=56.1

Q ss_pred             CceeEeecCCCCCce--ecchhhhcccCCCeEeCCCCCCCCCccccccCCC--ccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTG--KISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLP--LLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G--~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L~ls~N~l~G~iP~  512 (581)
                      +.++.|+|++|.+++  .+|..+..+++|+.|+|++|++++.  ..+..+.  .|++|+|++|.+++.+|.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            679999999999998  6777888999999999999999975  3344444  899999999999998873

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.51  E-value=8.9e-05  Score=67.78  Aligned_cols=67  Identities=27%  Similarity=0.337  Sum_probs=55.7

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCC-ccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGS-IPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .++++.|+|++|.+++.+|..+..+++|+.|+|++|++++. .+..+..+++|+.|++++|.+++..+
T Consensus        70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence            36788999999999887888888899999999999999863 23778889999999999999985544

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=97.50  E-value=7.8e-05  Score=75.00  Aligned_cols=55  Identities=25%  Similarity=0.365  Sum_probs=47.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .+|..||||++........+.+.+|+.++++  |||||+++
T Consensus        26 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   83 (297)
T 3fxz_A           26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL   83 (297)
T ss_dssp             EEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEe
Confidence            4799999999999984 5788999999976655667789999999999  99999875

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=97.49  E-value=9.4e-05  Score=81.16  Aligned_cols=53  Identities=32%  Similarity=0.552  Sum_probs=47.0

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...++..||||+++... ...++|.+|+++|++  |+|||+++
T Consensus       274 ~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~  328 (535)
T 2h8h_A          274 KLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLY  328 (535)
T ss_dssp             EEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEE
Confidence            789999999999999888889999997543 346789999999999  99999875

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.47  E-value=9.7e-05  Score=74.38  Aligned_cols=62  Identities=27%  Similarity=0.307  Sum_probs=27.7

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCC-ccccccccCccCCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLP-LLRVLNLDGNKLSG  508 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~ls~N~l~G  508 (581)
                      +++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|.+++
T Consensus       200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            344444444444433333344444444444444444444444444442 44444444444444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.47  E-value=0.0001  Score=73.40  Aligned_cols=67  Identities=31%  Similarity=0.325  Sum_probs=37.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCC-CCCCccccccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNS-LTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~-l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      ++++.|+|++|.+++..|..+..+++|+.|+|++|. +....|..+..+++|+.|++++|++++..|.
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  123 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG  123 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHh
Confidence            345555555555555445555556666666666665 4433355555566666666666666544343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.47  E-value=0.00013  Score=74.88  Aligned_cols=66  Identities=26%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      ..+|+.|+|++|.|++..|..|..|++|+.|+|++|+|++..|..+..+. |+.|+|.+|.|...-.
T Consensus        55 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred             ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence            36799999999999998888999999999999999999965444444454 9999999999986543

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=97.46  E-value=6.2e-05  Score=78.63  Aligned_cols=55  Identities=27%  Similarity=0.459  Sum_probs=42.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||.++.......++|.+|+++|++  |||||+++
T Consensus        95 ~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~  152 (373)
T 2x4f_A           95 EILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLY  152 (373)
T ss_dssp             EECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEE
Confidence            3699999999999986 5688999999976544556789999999999  99999875

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=97.46  E-value=0.00011  Score=72.21  Aligned_cols=54  Identities=30%  Similarity=0.414  Sum_probs=46.9

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...++..||||.++... ...+++.+|++++.+  |||||+++
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~   69 (268)
T 3sxs_A           14 KELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFY   69 (268)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4799999999999999988899999996543 345789999999999  99999875

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=97.46  E-value=0.00013  Score=72.41  Aligned_cols=54  Identities=31%  Similarity=0.460  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++...++..||||+++... ...++|.+|++++.+  |||||+++
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~   85 (283)
T 3gen_A           30 KELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLY   85 (283)
T ss_dssp             EECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             hhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEE
Confidence            4799999999999999988899999997542 345789999999999  99999875

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=97.46  E-value=0.00012  Score=72.41  Aligned_cols=54  Identities=35%  Similarity=0.599  Sum_probs=47.0

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...++..||||.++... ...+.|.+|++++++  ||||++++
T Consensus        19 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~   74 (279)
T 1qpc_A           19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLY   74 (279)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeecCCCCeEEEEEEEcCCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEE
Confidence            4799999999999999888899999996543 346789999999999  99999875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.45  E-value=0.00013  Score=77.58  Aligned_cols=66  Identities=24%  Similarity=0.288  Sum_probs=55.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|++++|.+++.+|
T Consensus       347 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          347 DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            568888999998888778888888899999999998886555566788889999999999988888

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=97.45  E-value=5.7e-05  Score=78.91  Aligned_cols=55  Identities=27%  Similarity=0.428  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeeec----CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA----DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~----~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|+..    ++..||||+++.... ...++|.+|+++|++  |||||+++
T Consensus        51 ~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~  112 (373)
T 2qol_A           51 KVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLE  112 (373)
T ss_dssp             EEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            37999999999999874    567899999975432 234689999999999  99999875

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=97.45  E-value=0.00012  Score=73.75  Aligned_cols=54  Identities=20%  Similarity=0.263  Sum_probs=46.5

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++.- .++..||||+++.......+.+.+|+++|.+   |||||+++
T Consensus        20 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~   77 (316)
T 2ac3_A           20 VLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELI   77 (316)
T ss_dssp             CCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEE
Confidence            589999999999984 5788999999976655567889999999876   99999875

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=97.45  E-value=0.00012  Score=78.43  Aligned_cols=52  Identities=29%  Similarity=0.495  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|... |..||||.++...  ..++|.+|+++|++  |||||+++
T Consensus       199 ~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~  252 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLL  252 (450)
T ss_dssp             EEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEE
Confidence            47999999999999986 6799999997543  56889999999999  99999975

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=97.44  E-value=0.0001  Score=73.57  Aligned_cols=55  Identities=22%  Similarity=0.385  Sum_probs=46.6

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++...+|..||||+++...  ....+.+.+|++++++  |||||+++
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   66 (288)
T 1ob3_A            8 EKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLY   66 (288)
T ss_dssp             EEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEE
T ss_pred             hhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeee
Confidence            4799999999999998888999999986432  2335789999999999  99999875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.43  E-value=0.00013  Score=72.72  Aligned_cols=64  Identities=23%  Similarity=0.219  Sum_probs=31.5

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV  510 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~i  510 (581)
                      .++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|.+.+..
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            4445555555555444444555555555555555555433344444555555555555554433

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=97.43  E-value=8.7e-05  Score=75.75  Aligned_cols=55  Identities=29%  Similarity=0.406  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec----CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA----DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~----~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...    .+..||||.++.... ...++|.+|+++|++  |||||+++
T Consensus        55 ~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~  116 (325)
T 3kul_A           55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLE  116 (325)
T ss_dssp             EEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            47999999999999973    345699999975432 235679999999999  99999875

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=97.42  E-value=0.00011  Score=79.84  Aligned_cols=54  Identities=28%  Similarity=0.433  Sum_probs=46.7

Q ss_pred             EeeccCCceeeeeeeecC-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...+ +..||||.++... ...++|.+|+++|++  |||||+++
T Consensus       226 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~  282 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLL  282 (495)
T ss_dssp             EESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEE
Confidence            379999999999999864 7899999997543 347889999999999  99999985

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.41  E-value=0.00022  Score=70.68  Aligned_cols=71  Identities=25%  Similarity=0.379  Sum_probs=56.0

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCC-CccccccCCCccccccccCccCCCCCchHHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      .+.++.|++++|.+.+..+..+..+++|+.|+|++|.+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  170 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR  170 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhh
Confidence            3578888888888886555568888888999999888876 4788888888999999999988865554443

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=97.41  E-value=0.00013  Score=75.22  Aligned_cols=55  Identities=29%  Similarity=0.428  Sum_probs=46.1

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCC-----------hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQG-----------PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~-----------~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++...+|..||||++.......           .+.|.+|++++++  |||||+++
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   95 (362)
T 3pg1_A           28 RFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILGLR   95 (362)
T ss_dssp             EEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             EEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcccee
Confidence            4899999999999998889999999986432221           2789999999999  99999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=97.40  E-value=8.2e-05  Score=74.83  Aligned_cols=55  Identities=27%  Similarity=0.369  Sum_probs=42.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... +|..||||++........+++.+|++++++  |||||+++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   74 (320)
T 2i6l_A           17 KPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVF   74 (320)
T ss_dssp             EECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEE
Confidence            47999999999999975 488999999976544556789999999999  99999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.40  E-value=0.00013  Score=77.71  Aligned_cols=75  Identities=24%  Similarity=0.276  Sum_probs=53.0

Q ss_pred             ccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccC
Q 008008          433 WDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       433 W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l  506 (581)
                      |..|.|...+..      +..++.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            456777654321      34567778888887766666777777777777777777766666777777777777777777


Q ss_pred             C
Q 008008          507 S  507 (581)
Q Consensus       507 ~  507 (581)
                      +
T Consensus       125 ~  125 (440)
T 3zyj_A          125 T  125 (440)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.39  E-value=0.0001  Score=76.56  Aligned_cols=70  Identities=29%  Similarity=0.328  Sum_probs=56.6

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      .++++.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|++++ +|..++
T Consensus        87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~  156 (361)
T 2xot_A           87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI  156 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGT
T ss_pred             CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHh
Confidence            3578888888888886666678888888899999888887778888888889999999888884 666554

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=97.39  E-value=0.00019  Score=71.34  Aligned_cols=55  Identities=42%  Similarity=0.612  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC-------hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG-------PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~-------~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..||||++.......       .++|.+|++++++  |||||+++
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   89 (287)
T 4f0f_A           25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY   89 (287)
T ss_dssp             EECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             hccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhh
Confidence            4799999999999997 478899999986543222       2689999999999  99999875

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=97.38  E-value=0.0002  Score=71.79  Aligned_cols=55  Identities=5%  Similarity=-0.039  Sum_probs=45.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|+.||||.++......   .++|.+|++++++  |||||+++
T Consensus        37 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~   97 (286)
T 3uqc_A           37 IFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVL   97 (286)
T ss_dssp             EEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceee
Confidence            47999999999999975 48899999997553332   3789999999999  99999875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.38  E-value=0.00018  Score=78.06  Aligned_cols=65  Identities=23%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC-CCchHH
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG-SVPTSL  514 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G-~iP~~l  514 (581)
                      +++.|+|++|.+++..|..+..+++|++|+|++|+++ .+|..  .+++|++|+|++|++++ .+|..+
T Consensus        46 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~  111 (520)
T 2z7x_B           46 KLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEF  111 (520)
T ss_dssp             TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred             cccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhh
Confidence            3455555555555444445555555555555555554 34443  44555555555555544 344443

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=97.38  E-value=0.00014  Score=81.27  Aligned_cols=54  Identities=24%  Similarity=0.392  Sum_probs=45.8

Q ss_pred             eeccCCceeeeeeeec---CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA---DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.+.   ++..||||+++... ....++|.+|+++|++  |||||+++
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~  402 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLI  402 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            5899999999999874   45689999997653 3456889999999999  99999985

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=97.37  E-value=0.00014  Score=73.95  Aligned_cols=55  Identities=31%  Similarity=0.463  Sum_probs=46.9

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.+     .+|..||||++........++|.+|++++++  |||||+++
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~  108 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK  108 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            4799999999999984     4678999999976555556789999999999  99999874

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=97.36  E-value=8e-05  Score=77.75  Aligned_cols=55  Identities=25%  Similarity=0.421  Sum_probs=45.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|... ++..||||.++..... ..++|.+|+++|++  |||||+++
T Consensus       120 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~  178 (377)
T 3cbl_A          120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLI  178 (377)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEE
T ss_pred             eEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            37999999999999985 7889999999754222 23578999999999  99999875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.36  E-value=0.0001  Score=68.06  Aligned_cols=65  Identities=22%  Similarity=0.196  Sum_probs=40.6

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccc--cccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      +.++.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|.  .+..+++|+.|++++|.++ .+|.
T Consensus        64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence            45666777777766432233466777777777777763 4555  5666677777777777665 4444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.35  E-value=0.00015  Score=73.95  Aligned_cols=66  Identities=35%  Similarity=0.441  Sum_probs=31.3

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchH
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                      .++.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|+++ .+|..
T Consensus       193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~  258 (330)
T 1xku_A          193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG  258 (330)
T ss_dssp             TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTT
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChh
Confidence            3444455555444444444444445555555555444444444444444555555554444 44443

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=97.35  E-value=0.00016  Score=75.34  Aligned_cols=53  Identities=21%  Similarity=0.362  Sum_probs=43.2

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++-    ..+..||||++...  ....++.+|+++|.+   |||||+++
T Consensus        27 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~   86 (361)
T 4f9c_A           27 DKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVK   86 (361)
T ss_dssp             EEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCS
T ss_pred             EEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEE
Confidence            4799999999999974    24578999998653  345678999999886   99999986

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.35  E-value=0.00016  Score=81.33  Aligned_cols=62  Identities=35%  Similarity=0.530  Sum_probs=32.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      .+++.|+|++|.+++..+..+.+++.|+.|+|++|.+++..|..+++++.|++|+|++|+++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   86 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS   86 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence            34555555555555444444555555555555555555555555555555555555555544

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=97.35  E-value=0.00017  Score=73.03  Aligned_cols=54  Identities=30%  Similarity=0.439  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++. +|..||||.+......  ..++|.+|+++|++  |||||+++
T Consensus        43 ~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~  100 (309)
T 3p86_A           43 EKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFM  100 (309)
T ss_dssp             EEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            3799999999999986 5789999999654322  24679999999999  99999875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=97.35  E-value=0.00013  Score=73.57  Aligned_cols=55  Identities=24%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .+|..||||++........+++.+|++++++  |||||+++
T Consensus        35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   92 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLV   92 (317)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCC
T ss_pred             EEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            4899999999999996 5788999999866544456789999999999  99999875

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=97.35  E-value=0.00018  Score=72.91  Aligned_cols=55  Identities=27%  Similarity=0.380  Sum_probs=46.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||+++... ....+.+.+|+++|++  |||||+++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   73 (319)
T 4euu_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLF   73 (319)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEE
Confidence            47999999999999975 48899999997543 3446788999999999  99999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.35  E-value=0.0002  Score=78.38  Aligned_cols=67  Identities=22%  Similarity=0.299  Sum_probs=48.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      +.++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+.++++|+.|++++|.++|.+|.
T Consensus       470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            4567777777777766666777777777777777777766666667777777777777777777664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.34  E-value=0.00021  Score=71.87  Aligned_cols=61  Identities=33%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      +++.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+..|+.++|++|.+..
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            4555555555554322223344555555555555554 455555555555555555555543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=97.33  E-value=0.00021  Score=70.61  Aligned_cols=55  Identities=20%  Similarity=0.335  Sum_probs=47.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..+|+|++........+.|.+|++++++  |||||+++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   72 (277)
T 3f3z_A           15 NTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLY   72 (277)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEE
Confidence            37899999999999975 467899999977666667899999999999  99999875

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.33  E-value=0.00016  Score=78.89  Aligned_cols=67  Identities=19%  Similarity=0.280  Sum_probs=43.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCC-CccccccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      ++++.|+|++|.+++..|..++.+++|+.|+|++|.+++ .+|..++.+++|+.|++++|++.+.+|.
T Consensus        74 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~  141 (549)
T 2z81_A           74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR  141 (549)
T ss_dssp             TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred             ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH
Confidence            456667777777666555556667777777777777665 3566666677777777777665555654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=97.33  E-value=0.00024  Score=70.80  Aligned_cols=55  Identities=24%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... +|..||||+++....  ...+.+.+|++++++  |||||+++
T Consensus         8 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   67 (292)
T 3o0g_A            8 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH   67 (292)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEE
Confidence            47999999999999974 688999999965432  234789999999999  99999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.33  E-value=0.00022  Score=78.89  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCC-CccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .+++.|+|++|.+++..+..++.+++|+.|+|++|.+++ .+|..++++++|+.|++++|++++..|..+
T Consensus       104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~  173 (606)
T 3vq2_A          104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL  173 (606)
T ss_dssp             TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence            567777777777776555667777788888888887765 577777788888888888887776555544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.33  E-value=0.00016  Score=79.57  Aligned_cols=67  Identities=24%  Similarity=0.220  Sum_probs=42.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC-CCchHHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG-SVPTSLV  515 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G-~iP~~l~  515 (581)
                      ++++.|+|++|.+++..|..|..+++|+.|+|++|+++ .+|..  .+++|+.|++++|++++ ++|..+.
T Consensus        76 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~  143 (562)
T 3a79_B           76 SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG  143 (562)
T ss_dssp             TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG
T ss_pred             CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhc
Confidence            45666666666666555566666666666666666666 56655  56667777777777665 4555543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=97.33  E-value=0.00021  Score=71.45  Aligned_cols=55  Identities=24%  Similarity=0.397  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||+|.+........++|.+|++++++  |||||+++
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   82 (302)
T 2j7t_A           25 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL   82 (302)
T ss_dssp             EEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeee
Confidence            47999999999999975 578999999977666677899999999998  99999875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.32  E-value=0.00023  Score=69.68  Aligned_cols=54  Identities=30%  Similarity=0.474  Sum_probs=46.8

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...++..||||.++... ...+++.+|++++++  ||||++++
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~   69 (267)
T 3t9t_A           14 QEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLY   69 (267)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4799999999999999888899999997543 345789999999999  99999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.31  E-value=0.00024  Score=78.53  Aligned_cols=69  Identities=33%  Similarity=0.358  Sum_probs=46.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      +.++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+..++.| .|++++|++++.+|..+.
T Consensus       476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence            456667777777766666667777777777777777777667777777777 777777777755554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.31  E-value=0.00013  Score=68.83  Aligned_cols=71  Identities=23%  Similarity=0.236  Sum_probs=61.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS  518 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  518 (581)
                      +.++.|++++|.++  .++.+..++.|+.|++++|++++..|..++.+++|+.|++++|++++..|..+....
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~  136 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP  136 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCS
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCC
Confidence            57999999999664  345889999999999999999998999999999999999999999988887765443

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=97.31  E-value=0.00019  Score=72.48  Aligned_cols=52  Identities=27%  Similarity=0.488  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +..||||+++..  ...++|.+|+++|++  |||||+++
T Consensus        14 ~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~   67 (307)
T 2eva_A           14 EVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLY   67 (307)
T ss_dssp             EEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEE
Confidence            47999999999999975 688999999642  345789999999999  99999875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=97.30  E-value=0.00025  Score=70.91  Aligned_cols=55  Identities=29%  Similarity=0.419  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++++     .++..||||+++... ....+.+.+|++++++  ||||++++
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   89 (302)
T 4e5w_A           27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYK   89 (302)
T ss_dssp             EEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             hccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeee
Confidence            4799999999999984     467899999997543 3446889999999999  99999875

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=97.30  E-value=0.00019  Score=71.77  Aligned_cols=55  Identities=25%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--------------------------CChHHHHHHHHHHhc--CCCc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--------------------------QGPKQFRTEVELIDY--YKNL  576 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--------------------------~~~~ef~~Ei~~l~~--H~Nl  576 (581)
                      ..||+|+||.||++.. .++..||||.++....                          ...++|.+|+++|++  ||||
T Consensus        19 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   98 (298)
T 2zv2_A           19 DEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPNV   98 (298)
T ss_dssp             EEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTTB
T ss_pred             eEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCCC
Confidence            4799999999999986 4678999999864321                          123578999999999  9999


Q ss_pred             cccc
Q 008008          577 SPTY  580 (581)
Q Consensus       577 V~l~  580 (581)
                      |+++
T Consensus        99 v~~~  102 (298)
T 2zv2_A           99 VKLV  102 (298)
T ss_dssp             CCEE
T ss_pred             CeEE
Confidence            9875

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=97.29  E-value=0.00013  Score=71.36  Aligned_cols=54  Identities=19%  Similarity=0.381  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|... +..||||.++....  ...++|.+|++++++  |||||+++
T Consensus        16 ~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   73 (271)
T 3kmu_A           16 TKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVL   73 (271)
T ss_dssp             EEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEE
T ss_pred             HHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheE
Confidence            47999999999999975 78899999975432  234679999999999  99999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.28  E-value=4.1e-05  Score=77.76  Aligned_cols=65  Identities=23%  Similarity=0.271  Sum_probs=58.9

Q ss_pred             CCceeEeecCCCCCceecchhhhcc-----cCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNL-----KSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV  510 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l-----~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~i  510 (581)
                      .+.++.|+|++|.+++. |..+..+     ++|+.|+|++|++++..|..++.+++|+.|++++|++.|.+
T Consensus       120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  189 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER  189 (312)
T ss_dssp             SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred             CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcch
Confidence            36799999999999987 8888887     89999999999999888899999999999999999998764

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=97.26  E-value=0.00016  Score=71.85  Aligned_cols=55  Identities=25%  Similarity=0.486  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeeecC-C-------ceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-G-------SEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-g-------~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.... +       ..||+|.+........++|.+|++++++  |||||+++
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   78 (289)
T 4fvq_A           14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNY   78 (289)
T ss_dssp             EEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEE
T ss_pred             eeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            479999999999998643 2       4699999976655567889999999999  99999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.26  E-value=8.2e-05  Score=75.47  Aligned_cols=70  Identities=24%  Similarity=0.335  Sum_probs=59.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCC--ccccc--cCCCccccccccCccCCC--CCchHHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGS--IPEFL--SQLPLLRVLNLDGNKLSG--SVPTSLV  515 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~--iP~~l--~~l~~L~~L~ls~N~l~G--~iP~~l~  515 (581)
                      +.++.|+|++|.+++..|..+..+++|+.|+|++|++.|.  +|..+  ..+++|+.|+|++|++++  .++..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  224 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA  224 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence            6799999999999988788999999999999999999887  45566  889999999999999984  4454443

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=97.26  E-value=0.00015  Score=74.56  Aligned_cols=55  Identities=25%  Similarity=0.396  Sum_probs=44.3

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++..      .+++.||||+++..... ..++|.+|++++.+   |||||+++
T Consensus        28 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~~   92 (359)
T 3vhe_A           28 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   92 (359)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeeee
Confidence            4799999999999974      34578999999754322 24679999999998   89999885

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=97.25  E-value=0.00026  Score=71.09  Aligned_cols=55  Identities=20%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. +|..||||.++.......+.+.+|++++++  ||||++++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   72 (304)
T 2jam_A           15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLE   72 (304)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehh
Confidence            47999999999999964 688999999976544455789999999999  99999874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.25  E-value=0.00014  Score=78.90  Aligned_cols=67  Identities=21%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                      ++++.|+|++|.+++..|..+..+++|+.|+|++|++++..|..++.+++|++|+|++|+++ .||..
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~   87 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH   87 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc
Confidence            57999999999999877789999999999999999999888999999999999999999998 68765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.25  E-value=0.00028  Score=65.13  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=53.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcccc-ccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      +.++.|+|++|.+++.  ..+..++.|+.|+|++|.+++ +|.. +..+++|+.|++++|+++ .+|.
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~  105 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGD  105 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGG
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchh
Confidence            4789999999999874  678899999999999999985 5544 488999999999999994 6775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.25  E-value=0.00016  Score=73.70  Aligned_cols=61  Identities=34%  Similarity=0.456  Sum_probs=40.4

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      ++++.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus       217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            45666666666666555556666666667777766666 66666666666667777666665

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.25  E-value=0.00023  Score=76.04  Aligned_cols=63  Identities=21%  Similarity=0.250  Sum_probs=35.3

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      +.++.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            345555556555555555555555556666666665554444445555556666666655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.25  E-value=0.00018  Score=72.43  Aligned_cols=69  Identities=23%  Similarity=0.214  Sum_probs=45.5

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      ++++.|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|++++.+|..+
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            456667777777766556666667777777777777765555556666777777777777666555443

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=97.24  E-value=0.00023  Score=74.90  Aligned_cols=52  Identities=21%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             eeccCCceeeeeeeec---CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA---DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+++..   ++..||||+++..  ...+.+.+|+++|++  |||||+++
T Consensus        28 ~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~   84 (405)
T 3rgf_A           28 KVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQ   84 (405)
T ss_dssp             CCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCC
T ss_pred             EeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEe
Confidence            5899999999999975   4678999999643  234679999999999  99999875

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=97.24  E-value=0.00027  Score=70.90  Aligned_cols=53  Identities=36%  Similarity=0.659  Sum_probs=44.1

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCC----CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASS----SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.. ++..||||++....    ....+.|.+|++++++  |||||+++
T Consensus        38 ~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   96 (307)
T 2nru_A           38 KMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELL   96 (307)
T ss_dssp             EEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            689999999999997 57899999986432    2235679999999999  99999875

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=97.24  E-value=0.00017  Score=73.31  Aligned_cols=55  Identities=27%  Similarity=0.412  Sum_probs=46.5

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++++     .++..||||++........+.|.+|++++++  ||||++++
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   90 (327)
T 3lxl_A           29 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYR   90 (327)
T ss_dssp             EEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             hhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEE
Confidence            4899999999999984     4678999999976544445779999999999  99999874

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=97.24  E-value=0.00017  Score=73.98  Aligned_cols=55  Identities=25%  Similarity=0.428  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .+|..||||++.....  ...+.+.+|+++|++  |||||+++
T Consensus        21 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~   80 (328)
T 3fe3_A           21 KTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLF   80 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4899999999999996 6789999999965422  234678999999999  99999875

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=97.24  E-value=0.00027  Score=73.02  Aligned_cols=55  Identities=31%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .+|..||||++.......   .++|.+|+++|++  |||||+++
T Consensus        60 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~  120 (348)
T 1u5q_A           60 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYR  120 (348)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4799999999999985 678899999997543332   3578999999999  99999875

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=97.24  E-value=0.00026  Score=71.78  Aligned_cols=55  Identities=31%  Similarity=0.472  Sum_probs=39.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. .+|..||||+++.... ...+.+.+|++++++  |||||+++
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   69 (317)
T 2pmi_A           11 EKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLY   69 (317)
T ss_dssp             --------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEE
T ss_pred             eEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEE
Confidence            3789999999999986 4688999999975433 345789999999999  99999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.24  E-value=0.00032  Score=70.47  Aligned_cols=72  Identities=28%  Similarity=0.320  Sum_probs=54.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS  518 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  518 (581)
                      ++++.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|..++...
T Consensus       124 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~  195 (290)
T 1p9a_G          124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (290)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence            56888888888888655556778888888888888888444445567888888888888887 6777765543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=97.23  E-value=0.00026  Score=70.46  Aligned_cols=54  Identities=24%  Similarity=0.393  Sum_probs=44.9

Q ss_pred             eeccCCceeeeeeeec---CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA---DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...   ++..||||.++.... ...++|.+|++++++  ||||++++
T Consensus        17 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   76 (287)
T 1u59_A           17 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLI   76 (287)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             cccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            7899999999999863   567899999976432 235789999999999  99999875

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=97.22  E-value=0.00015  Score=73.67  Aligned_cols=53  Identities=23%  Similarity=0.278  Sum_probs=43.0

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|+.. +..||||+++... ....++..|+.+|++  |||||+++
T Consensus        30 ~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~   84 (322)
T 3soc_A           30 EVKARGRFGCVWKAQLL-NEYVAVKIFPIQD-KQSWQNEYEVYSLPGMKHENILQFI   84 (322)
T ss_dssp             EEEECSTTCEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEE
T ss_pred             heecccCceEEEEEEEC-CCEEEEEEeecCc-hHHHHHHHHHHHHhcCCCCCchhhc
Confidence            48999999999999876 7899999996432 223456778988988  99999975

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=97.22  E-value=0.00021  Score=72.40  Aligned_cols=55  Identities=33%  Similarity=0.464  Sum_probs=41.7

Q ss_pred             EeeccCCceeeeeeeecCC----ceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADG----SEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g----~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.....    ..||||.++...  ....++|.+|++++++  |||||+++
T Consensus        29 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   91 (323)
T 3qup_A           29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLV   91 (323)
T ss_dssp             EEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCC
T ss_pred             ceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhh
Confidence            4799999999999997543    279999997542  3345789999999999  99999875

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=97.22  E-value=0.00016  Score=75.10  Aligned_cols=55  Identities=35%  Similarity=0.494  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccC-CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.+.      ++..||||+++.. ..+...+|.+|++++++  |||||+++
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~  140 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCI  140 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEE
Confidence            47999999999999963      3568999999643 22345679999999999  99999875

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=97.21  E-value=0.00022  Score=79.97  Aligned_cols=54  Identities=26%  Similarity=0.392  Sum_probs=44.8

Q ss_pred             eeccCCceeeeeeeec---CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA---DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.+.   .+..||||+++....  ...++|.+|+++|++  |||||+++
T Consensus       376 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~  436 (635)
T 4fl3_A          376 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI  436 (635)
T ss_dssp             EEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            6999999999999763   457899999975432  235789999999999  99999986

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.21  E-value=0.00018  Score=78.76  Aligned_cols=66  Identities=24%  Similarity=0.363  Sum_probs=41.4

Q ss_pred             CceeEeecCCCCCc-eecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLT-GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~-G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..+..+++|+.|++++|++++..|
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence            45666666666665 4566666666666666666666666556666666666666666666665444

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=97.21  E-value=0.00024  Score=72.42  Aligned_cols=55  Identities=29%  Similarity=0.431  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++...      ++..||||.++..... ..++|.+|++++++  |||||+++
T Consensus        53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~  116 (343)
T 1luf_A           53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLL  116 (343)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            47999999999999974      3478999999754322 24679999999999  99999875

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=97.20  E-value=0.00035  Score=72.64  Aligned_cols=55  Identities=24%  Similarity=0.280  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC------ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ------GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~------~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++.....      ..+++.+|+++|.+  |||||+++
T Consensus        18 ~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~   81 (361)
T 2yab_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLH   81 (361)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEE
Confidence            47999999999999964 6889999998654321      24789999999999  99999875

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=97.20  E-value=0.00018  Score=72.84  Aligned_cols=55  Identities=27%  Similarity=0.407  Sum_probs=46.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..||||++........+++.+|++++.+   |||||+++
T Consensus        34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~   92 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFC   92 (337)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             EEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcc
Confidence            4899999999999996 4688999999865544446789999999987   99999874

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.20  E-value=0.0003  Score=73.83  Aligned_cols=55  Identities=27%  Similarity=0.380  Sum_probs=46.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|... +|..||||+++... ....+.+.+|+++|++  |||||+++
T Consensus        15 ~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~   73 (396)
T 4eut_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLF   73 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEE
Confidence            47999999999999975 48899999997543 3446788999999999  99999875

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=97.20  E-value=0.00024  Score=72.50  Aligned_cols=55  Identities=24%  Similarity=0.437  Sum_probs=39.8

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccCC----CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSASS----SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.    .+|..||||.++...    ......+.+|+++|++  |||||+++
T Consensus        23 ~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   87 (327)
T 3a62_A           23 RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLI   87 (327)
T ss_dssp             EEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCcccee
Confidence            4899999999999986    468899999997542    2234678899999999  99999875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.20  E-value=0.00037  Score=76.59  Aligned_cols=62  Identities=26%  Similarity=0.306  Sum_probs=54.5

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCC-CccccccCCCccccccccCccCCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .++++.|+|++|.++ .+|..  .+++|+.|+|++|++++ .+|..++++++|+.|++++|++++.
T Consensus        99 l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~  161 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL  161 (562)
T ss_dssp             CTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT
T ss_pred             CCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC
Confidence            367999999999998 67776  89999999999999987 5788999999999999999999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.20  E-value=0.00026  Score=75.30  Aligned_cols=64  Identities=20%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            5677777777777776666777777777777777777765556667777777777777777543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.19  E-value=0.00019  Score=72.59  Aligned_cols=67  Identities=28%  Similarity=0.347  Sum_probs=33.7

Q ss_pred             ceeEeecCCCCCce--ecchh-hhcccCCCeEeCCCCCCCCCccccccCC---CccccccccCccCCCCCchHH
Q 008008          447 KIISLNLTSEGLTG--KISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQL---PLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G--~ip~~-l~~l~~L~~L~Ls~N~l~G~iP~~l~~l---~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .++.|+|++|+++.  .++.. +..+++|+.|+|++|++++.+|..+..+   ++|+.|+|++|+++ .+|..+
T Consensus       198 ~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~  270 (310)
T 4glp_A          198 AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL  270 (310)
T ss_dssp             CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred             CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh
Confidence            45555555555541  11111 3445555555555555555555555444   35555555555555 455443

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=97.19  E-value=0.00041  Score=70.73  Aligned_cols=55  Identities=20%  Similarity=0.268  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC------ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ------GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~------~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++.....      ..+++.+|+++|++  |||||+++
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   80 (326)
T 2y0a_A           17 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLH   80 (326)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEE
Confidence            47999999999999964 6889999998643221      35789999999999  99999875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.18  E-value=0.00042  Score=68.55  Aligned_cols=66  Identities=32%  Similarity=0.391  Sum_probs=46.6

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      ++++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++ +|.
T Consensus       133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~  198 (270)
T 2o6q_A          133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPE  198 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred             cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCH
Confidence            567777777777775444456777777888888777776555567777777888888777774 443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.17  E-value=0.00032  Score=75.17  Aligned_cols=69  Identities=22%  Similarity=0.218  Sum_probs=42.5

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      +.++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+..+++|+.|++++|++.+..|..+
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  148 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF  148 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence            456666666666664333345666666666666666666666666666666666666666665444333

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=97.17  E-value=0.00044  Score=68.78  Aligned_cols=55  Identities=27%  Similarity=0.380  Sum_probs=46.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..+|+|.+.... ....+++.+|+++|++  |||||+++
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   86 (285)
T 3is5_A           28 RKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIF   86 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             ceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHH
Confidence            4799999999999986 467899999987543 3356889999999999  99999875

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=97.16  E-value=0.00032  Score=68.90  Aligned_cols=54  Identities=35%  Similarity=0.567  Sum_probs=42.6

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCC----CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASS----SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... |..||||.++...    .+..+.+.+|++++++  ||||++++
T Consensus        13 ~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   72 (271)
T 3dtc_A           13 EIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALR   72 (271)
T ss_dssp             EEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEE
Confidence            47999999999999975 7899999986432    2335789999999999  99999875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.16  E-value=0.00021  Score=77.44  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=54.3

Q ss_pred             CceeEeecCCCCCceecchhhh-cccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPSLS-NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      +.++.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. +..+++|+.|+|++|++++ +|..+..
T Consensus       144 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~  212 (487)
T 3oja_A          144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQS  212 (487)
T ss_dssp             SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred             CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcC
Confidence            5788999999999988888876 789999999999999865 33 3468899999999999986 4544433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.15  E-value=0.00041  Score=80.33  Aligned_cols=71  Identities=24%  Similarity=0.315  Sum_probs=53.8

Q ss_pred             CceeEeecCCCCCceecchh--hhcccCCCeEeCCCCCCCCCcc-ccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPS--LSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~--l~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      ..++.|+|++|.+++.+|..  +..+++|+.|+|++|.+++..| ..++++++|+.|+|++|.+++..|..+..
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            56778888888887766665  7788888888888888877654 56778888888888888888777766543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=97.15  E-value=0.00028  Score=71.89  Aligned_cols=55  Identities=22%  Similarity=0.416  Sum_probs=43.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.+..... ...+.+.+|++++++  |||||+++
T Consensus        13 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~   71 (323)
T 3tki_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFY   71 (323)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEE
Confidence            47999999999999865 788999999864432 334679999999998  99999875

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=97.15  E-value=0.00049  Score=67.98  Aligned_cols=55  Identities=22%  Similarity=0.269  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC------CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS------QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~------~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++....      ...++|.+|++++++  ||||++++
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   74 (283)
T 3bhy_A           11 EELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLH   74 (283)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehh
Confidence            47899999999999975 688999999864321      135789999999999  99999875

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=97.14  E-value=0.00032  Score=70.76  Aligned_cols=55  Identities=29%  Similarity=0.369  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++- .++..||||.++......   .+.|.+|++++++  |||||+++
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   78 (311)
T 3ork_A           18 EILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVY   78 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEE
T ss_pred             EEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEE
Confidence            4799999999999995 678899999997643333   3578999999999  99999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.14  E-value=0.00037  Score=77.37  Aligned_cols=65  Identities=25%  Similarity=0.282  Sum_probs=53.9

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .+.++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.
T Consensus       122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            36788999999998854344468899999999999999988888888999999999999988863

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=97.14  E-value=0.00041  Score=71.12  Aligned_cols=55  Identities=20%  Similarity=0.358  Sum_probs=45.9

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCC--CChHHHHHHHHHHhc--C--CCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--Y--KNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H--~NlV~l~  580 (581)
                      ..||+|+||.||++...++..||||++.....  +..++|.+|+++|.+  |  +|||+++
T Consensus        15 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~   75 (343)
T 3dbq_A           15 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLY   75 (343)
T ss_dssp             EEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEe
Confidence            48999999999999988899999999864432  234789999999998  5  9999875

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=97.14  E-value=0.00022  Score=76.74  Aligned_cols=55  Identities=29%  Similarity=0.320  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .+|..||||++....  ....+++.+|+++|++  |||||+++
T Consensus        68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~  127 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLL  127 (464)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999985 468899999996432  2235678999999998  99999986

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=97.14  E-value=0.00027  Score=71.68  Aligned_cols=55  Identities=27%  Similarity=0.408  Sum_probs=44.3

Q ss_pred             EeeccCCceeeeeeee-----cCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-----ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-----~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.+     .++..||||+++.... +..+.|.+|+++|++  |||||+++
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   99 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYK   99 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEE
Confidence            4799999999988865     2578999999975432 234679999999999  99999875

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=97.14  E-value=0.00033  Score=71.76  Aligned_cols=55  Identities=22%  Similarity=0.358  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||+++..... ...++.+|++++++  |||||+++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   75 (353)
T 2b9h_A           17 SLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIF   75 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCee
Confidence            47999999999999974 6889999999643222 24678899999999  99999875

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=97.13  E-value=0.00047  Score=71.11  Aligned_cols=55  Identities=16%  Similarity=0.358  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC-----CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS-----SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~-----~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||.++..     .....++|.+|++++++  |||||+++
T Consensus        30 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~   92 (351)
T 3c0i_A           30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELL   92 (351)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999986 46889999998532     22346789999999999  99999875

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=97.12  E-value=0.00034  Score=69.63  Aligned_cols=55  Identities=36%  Similarity=0.478  Sum_probs=43.9

Q ss_pred             EeeccCCceeeeeeeec-CC---ceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DG---SEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g---~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|... ++   ..+|+|.++.... ...+.|.+|++++++  |||||+++
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   88 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALI   88 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCC
T ss_pred             ceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            37999999999999863 22   3799999965332 235789999999999  99999875

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=97.12  E-value=0.00032  Score=72.20  Aligned_cols=55  Identities=25%  Similarity=0.305  Sum_probs=46.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|..||||.++..   .....+.+.+|+++|++  |||||+++
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~   71 (337)
T 1o6l_A           11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK   71 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceE
Confidence            47999999999999864 6889999999643   33456789999999999  99999875

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=97.12  E-value=0.00033  Score=70.29  Aligned_cols=55  Identities=27%  Similarity=0.441  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++..      .++..||||.++.... ...+++.+|++++++  |||||+++
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   92 (314)
T 2ivs_A           29 KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLY   92 (314)
T ss_dssp             EEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEE
Confidence            4799999999999985      3457899999975432 234679999999999  99999875

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=97.11  E-value=0.00046  Score=70.81  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=45.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .+|..||||++....  .....++.+|+++|++  |||||+++
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   82 (351)
T 3mi9_A           23 AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI   82 (351)
T ss_dssp             EECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHh
Confidence            4799999999999997 578899999986443  2335688999999999  99999875

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=97.11  E-value=0.00012  Score=76.16  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=43.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHH---HHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEV---ELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei---~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. .+|+.||||+++..   .....+.|.+|+   ++|++  |||||+++
T Consensus        79 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~  142 (377)
T 3byv_A           79 TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVH  142 (377)
T ss_dssp             EEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHH
T ss_pred             ceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            4799999999999996 56899999999743   223357899999   56665  99999864

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=97.11  E-value=0.00029  Score=73.35  Aligned_cols=55  Identities=27%  Similarity=0.440  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeee--------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL--------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l--------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++.        .++..||||.++.... ...++|.+|+++|++   |||||+++
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~  153 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL  153 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEE
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEE
Confidence            4799999999999985        2345799999975422 235679999999987   99999875

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=97.11  E-value=0.00031  Score=74.47  Aligned_cols=55  Identities=22%  Similarity=0.340  Sum_probs=43.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC--------CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--------SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--------~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.. .++..||||.+....        ......|.+|+++|++  |||||+++
T Consensus       141 ~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~  206 (419)
T 3i6u_A          141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIK  206 (419)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCC
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4799999999999986 457899999986421        1223468999999999  99999875

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=97.11  E-value=0.0004  Score=71.85  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC-hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG-PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~-~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .++..||||++.....+. .+.+.+|+++|.+  |||||+++
T Consensus        33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   91 (364)
T 3qyz_A           33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGIN   91 (364)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCC
T ss_pred             EEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccce
Confidence            4899999999999985 467899999997543322 3679999999999  99999875

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=97.11  E-value=0.0003  Score=71.77  Aligned_cols=55  Identities=24%  Similarity=0.417  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC-----CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS-----SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~-----~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .++..||||.+...     .....++|.+|++++++  |||||+++
T Consensus        32 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~   94 (345)
T 3hko_A           32 GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLY   94 (345)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceee
Confidence            4799999999999986 46789999998532     23446789999999999  99999875

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=97.11  E-value=0.00042  Score=68.42  Aligned_cols=52  Identities=29%  Similarity=0.487  Sum_probs=43.7

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... |..||||.++..  ...+.|.+|++++++  |||||+++
T Consensus        27 ~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~   80 (278)
T 1byg_A           27 QTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLL   80 (278)
T ss_dssp             EEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEE
T ss_pred             eEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            47999999999999875 789999999643  346789999999999  99999875

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=97.11  E-value=0.00029  Score=75.36  Aligned_cols=54  Identities=20%  Similarity=0.361  Sum_probs=36.5

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.. .+|..||||++......  ..+.+.+|+++|++  |||||+++
T Consensus        60 ~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~  118 (458)
T 3rp9_A           60 LIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVL  118 (458)
T ss_dssp             C-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceE
Confidence            789999999999985 46889999999653222  34679999999999  99999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.10  E-value=0.00018  Score=69.71  Aligned_cols=62  Identities=19%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCC-CCCCccccccCCCccccccccC-ccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNS-LTGSIPEFLSQLPLLRVLNLDG-NKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~-l~G~iP~~l~~l~~L~~L~ls~-N~l~  507 (581)
                      ..++.|+|++|++++..+..+..+++|+.|+|++|. +++..|..+..+++|+.|++++ |+++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~   94 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT   94 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee
Confidence            356777777777765544466677777777777775 5533334566667777777776 6665

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=97.09  E-value=0.00027  Score=71.99  Aligned_cols=55  Identities=33%  Similarity=0.558  Sum_probs=40.4

Q ss_pred             EeeccCCceeeeeeee-cCCc----eEEEEeeccC-CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGS----EVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~----~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.. .++.    .||+|.++.. .....++|.+|++++++  |||||+++
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   83 (327)
T 3poz_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL   83 (327)
T ss_dssp             EEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            4899999999999995 3443    4689988643 33556889999999999  99999875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.09  E-value=0.00033  Score=81.04  Aligned_cols=75  Identities=20%  Similarity=0.157  Sum_probs=64.1

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcccc--ccCCCccccccccCccCCCCCch-HHHhhcc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF--LSQLPLLRVLNLDGNKLSGSVPT-SLVARSQ  519 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~--l~~l~~L~~L~ls~N~l~G~iP~-~l~~~~~  519 (581)
                      .++++.|+|++|.+++..|..|..+++|+.|+|++|.+++.+|..  +..+++|+.|+|++|++.+..|. .+....+
T Consensus        72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~  149 (844)
T 3j0a_A           72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS  149 (844)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred             CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence            467999999999999888999999999999999999999988776  88999999999999999886654 4444333

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=97.09  E-value=0.0005  Score=69.03  Aligned_cols=55  Identities=25%  Similarity=0.335  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCC--hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQG--PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~--~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||++.......  .+.+.+|++++++  |||||+++
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   68 (311)
T 4agu_A            9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLL   68 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchh
Confidence            47999999999999975 58899999986543222  4678899999999  99999875

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=97.09  E-value=0.00031  Score=71.81  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCC-----------------hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQG-----------------PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~-----------------~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. +|..||||.+.......                 .+.|.+|++++++  |||||+++
T Consensus        37 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           37 RTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             EEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             EEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            4799999999999998 88999999986432111                 1889999999999  99999875

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=97.08  E-value=0.00033  Score=71.35  Aligned_cols=55  Identities=27%  Similarity=0.354  Sum_probs=42.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .++..||||+++....  ...+.+.+|+++|++  |||||+++
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   99 (329)
T 3gbz_A           40 TKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELK   99 (329)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEE
T ss_pred             EEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEE
Confidence            4899999999999984 5788999999964432  234678899999999  99999875

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=97.08  E-value=0.00042  Score=68.71  Aligned_cols=54  Identities=28%  Similarity=0.433  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeecC-CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...+ +..||||.++.. ....++|.+|++++++  |||||+++
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~   75 (288)
T 3kfa_A           19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLL   75 (288)
T ss_dssp             EESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            379999999999999754 788999999643 3346789999999999  99999875

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=97.08  E-value=0.0006  Score=69.04  Aligned_cols=55  Identities=24%  Similarity=0.296  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC------ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ------GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~------~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++.....      ..++|.+|++++.+  |||||+++
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   81 (321)
T 2a2a_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLH   81 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEE
Confidence            47999999999999964 6889999998653221      35789999999999  99999875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=97.07  E-value=0.00038  Score=69.83  Aligned_cols=55  Identities=27%  Similarity=0.451  Sum_probs=44.6

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++..      .++..||||.++..... ..+.|.+|++++++   |||||+++
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~   93 (313)
T 1t46_A           29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLL   93 (313)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             HhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEE
Confidence            4799999999999985      34678999999754332 34679999999987   99999875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.07  E-value=0.00054  Score=71.41  Aligned_cols=69  Identities=22%  Similarity=0.256  Sum_probs=58.8

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcccc-ccCCCccccccccCccCCCCCchHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      .+.++.|+|++|.+++..|..+..++.|+.|+|++|.++ .+|.. +..+++|+.|++++|++.+..|..+
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  161 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTF  161 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhc
Confidence            467999999999999877778999999999999999998 56655 5889999999999999986555544

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=97.06  E-value=0.00046  Score=68.87  Aligned_cols=55  Identities=33%  Similarity=0.492  Sum_probs=43.2

Q ss_pred             EeeccCCceeeeeeeecCC----ceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADG----SEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g----~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...+.    ..+|||.++.... ...++|.+|++++++  |||||+++
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   92 (298)
T 3f66_A           31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL   92 (298)
T ss_dssp             EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCC
T ss_pred             ceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeee
Confidence            3799999999999996432    3589999875432 234779999999999  99999875

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=97.06  E-value=0.00044  Score=71.88  Aligned_cols=55  Identities=25%  Similarity=0.308  Sum_probs=39.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .+|..||||++......  ..+.+.+|+++|++  |||||+++
T Consensus        31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~   90 (367)
T 1cm8_A           31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLL   90 (367)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCS
T ss_pred             EEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCce
Confidence            4799999999999986 56889999999643222  24678999999999  99999875

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=97.06  E-value=0.00055  Score=70.95  Aligned_cols=54  Identities=17%  Similarity=0.125  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++-. ++..||||.+.... ...+.+.+|+.++++  |||||+++
T Consensus        26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~   82 (361)
T 3uc3_A           26 KDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFK   82 (361)
T ss_dssp             EEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEE
Confidence            47999999999999964 68899999996542 345779999999999  99999875

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=97.06  E-value=0.00034  Score=73.51  Aligned_cols=55  Identities=18%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..+|+|.+..........+.+|+++|++  |||||+++
T Consensus        57 ~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~  114 (387)
T 1kob_A           57 EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLH  114 (387)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEE
T ss_pred             EEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEE
Confidence            47999999999999864 678999999975443345679999999999  99999875

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=97.06  E-value=0.00056  Score=68.50  Aligned_cols=55  Identities=29%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .++..||||.+.......   .+.|.+|++++++  |||||+++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~   77 (294)
T 4eqm_A           17 DKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMI   77 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEE
T ss_pred             EEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEE
Confidence            4799999999999985 467899999986443332   4679999999999  99999875

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=97.05  E-value=0.00057  Score=68.04  Aligned_cols=54  Identities=26%  Similarity=0.397  Sum_probs=42.2

Q ss_pred             eeccCCceeeeeeee---cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL---ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l---~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++..   ..+..||||.++.....  ..++|.+|++++++  ||||++++
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   84 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI   84 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            799999999999965   34678999999754322  25789999999999  99999875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=97.05  E-value=0.00036  Score=72.83  Aligned_cols=55  Identities=35%  Similarity=0.529  Sum_probs=44.3

Q ss_pred             EeeccCCceeeeeeeec--CC--ceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA--DG--SEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~--~g--~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...  ++  ..||||.++.... ...++|.+|++++++  |||||+++
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~  156 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL  156 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCC
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEE
Confidence            37999999999999974  22  3689999865433 335789999999999  99999986

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.04  E-value=0.00059  Score=75.69  Aligned_cols=72  Identities=19%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      .+.++.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+..
T Consensus        98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  169 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA  169 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence            367999999999999877778899999999999999999544455689999999999999999777765544

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=97.04  E-value=0.00049  Score=67.85  Aligned_cols=51  Identities=25%  Similarity=0.428  Sum_probs=43.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||+++..    .+++.+|++++.+  ||||++++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~e~~~l~~l~h~~i~~~~   70 (284)
T 2a19_B           17 ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYN----NEKAEREVKALAKLDHVNIVHYN   70 (284)
T ss_dssp             EEEECSSSCCEEEEEETTTCCEEEEEEEECC----SGGGHHHHHHHHHCCCTTBCCEE
T ss_pred             eeeccCCceEEEEEEEcCCCeEEEEEEeccc----cHHHHHHHHHHHhCCCCCEEEEe
Confidence            47999999999999975 7899999999643    2568899999999  99999874

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=97.04  E-value=0.00061  Score=73.38  Aligned_cols=55  Identities=33%  Similarity=0.503  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.-. +|..||||++....   ....+.+.+|+++|++  |||||+++
T Consensus        32 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~   92 (484)
T 3nyv_A           32 RVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLY   92 (484)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            47999999999999964 78899999986432   3346789999999999  99999875

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=97.04  E-value=0.00031  Score=73.09  Aligned_cols=55  Identities=25%  Similarity=0.344  Sum_probs=41.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|.- .+|..||||++.....  ...+.+.+|+++|++  |||||+++
T Consensus        35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~   94 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLL   94 (367)
T ss_dssp             EECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             eEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999984 5688999999965322  234678899999999  99999875

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=97.03  E-value=0.0006  Score=67.79  Aligned_cols=54  Identities=30%  Similarity=0.431  Sum_probs=44.4

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.. .++..||+|.+.....  ...+.|.+|++++++  |||||+++
T Consensus        33 ~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   91 (290)
T 1t4h_A           33 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY   91 (290)
T ss_dssp             EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeee
Confidence            699999999999986 4577899999864422  234679999999999  99999875

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=97.03  E-value=0.00042  Score=71.24  Aligned_cols=55  Identities=24%  Similarity=0.370  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..||||.+...   .....+.+.+|++++++  |||||+++
T Consensus        15 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~   75 (336)
T 3h4j_B           15 ETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLY   75 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            4799999999999996 57889999998532   23345689999999999  99999875

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=97.03  E-value=0.00065  Score=69.76  Aligned_cols=55  Identities=27%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||++......  ..+++.+|++++++  |||||+++
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   89 (353)
T 3coi_A           30 THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLL   89 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             eeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHh
Confidence            4799999999999986 46889999999653222  24678999999999  99999875

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=97.02  E-value=0.00072  Score=66.40  Aligned_cols=55  Identities=22%  Similarity=0.416  Sum_probs=45.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.++.... ...+.+.+|++++++  ||||++++
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   71 (276)
T 2yex_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFY   71 (276)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeee
Confidence            37999999999999974 688999999865433 345789999999999  99999875

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=97.02  E-value=0.0003  Score=74.57  Aligned_cols=51  Identities=27%  Similarity=0.469  Sum_probs=42.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|..||||++....    +.+.+|+++|++  |||||+++
T Consensus        60 ~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~  113 (420)
T 1j1b_A           60 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLR  113 (420)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEE
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCcccee
Confidence            47999999999999974 58899999986432    234579999999  99999874

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=97.02  E-value=0.00059  Score=71.55  Aligned_cols=55  Identities=20%  Similarity=0.357  Sum_probs=45.7

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCC--CChHHHHHHHHHHhc----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      +.||+|+||.||++...++..||||.+.....  +..++|.+|+++|.+    |+|||+++
T Consensus        62 ~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~  122 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLY  122 (390)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             EEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEE
Confidence            47999999999999988889999999865432  235789999999987    49999875

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=97.01  E-value=0.00056  Score=70.96  Aligned_cols=55  Identities=22%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++.....  ..+.+.+|++++++  |||||+++
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~   94 (362)
T 2bdw_A           35 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLH   94 (362)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            47999999999999864 6889999999654322  24678999999999  99999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.01  E-value=0.00018  Score=79.66  Aligned_cols=58  Identities=36%  Similarity=0.582  Sum_probs=42.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      +.++.|+|++|.++ .+|   ..+++|+.|+|++|++++ +|. ++.  +|+.|+|++|++++ ||.
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~  137 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE  137 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC
Confidence            45777788888777 566   456788888888888886 777 554  67777777777776 655

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=97.01  E-value=0.00065  Score=67.68  Aligned_cols=55  Identities=24%  Similarity=0.383  Sum_probs=43.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++...  ....+++.+|++++++  ||||++++
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   68 (299)
T 2r3i_A            9 EKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLL   68 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             hhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEE
Confidence            47999999999999974 68899999986442  2335789999999999  99999875

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=97.01  E-value=0.00036  Score=71.98  Aligned_cols=53  Identities=25%  Similarity=0.274  Sum_probs=38.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. ++..||||.++...  ..+.+.+|+++|++  |||||+++
T Consensus        59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~  114 (349)
T 2w4o_A           59 SELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLK  114 (349)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEE
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCccee
Confidence            47999999999999975 57789999997542  34678899999999  99999875

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=97.01  E-value=0.00086  Score=67.32  Aligned_cols=55  Identities=25%  Similarity=0.409  Sum_probs=43.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .+|..||||+++.....   ..++|.+|++++++  ||||++++
T Consensus        38 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   98 (310)
T 2wqm_A           38 KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYY   98 (310)
T ss_dssp             EEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4799999999999996 57889999999753322   24678999999999  99999875

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=97.01  E-value=0.00062  Score=68.72  Aligned_cols=55  Identities=20%  Similarity=0.140  Sum_probs=42.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC--ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ--GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+|... +|+.||||++......  ...++..|+..+.+   |||||+++
T Consensus        63 ~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~  123 (311)
T 3p1a_A           63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLE  123 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             heeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            47999999999999975 7899999998654322  23456667766655   99999875

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=97.01  E-value=0.00061  Score=67.83  Aligned_cols=53  Identities=32%  Similarity=0.543  Sum_probs=43.3

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...+  .||||.++.....  ..+.|.+|+++|++  |||||+++
T Consensus        30 ~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   86 (289)
T 3og7_A           30 QRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFM   86 (289)
T ss_dssp             EEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            479999999999998653  5999999754322  34679999999999  99999874

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=97.00  E-value=0.00056  Score=67.49  Aligned_cols=55  Identities=31%  Similarity=0.450  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||.+...   .....+.+.+|++++++  ||||++++
T Consensus        17 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   77 (278)
T 3cok_A           17 NLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELY   77 (278)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEE
T ss_pred             eeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEE
Confidence            4799999999999986 57889999998643   23345789999999999  99999875

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=97.00  E-value=0.00055  Score=67.76  Aligned_cols=55  Identities=25%  Similarity=0.338  Sum_probs=44.0

Q ss_pred             EeeccCCceeeeeeeecC----CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD----GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|....    +..||||.++.... ...+.|.+|++++++  |||||+++
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   82 (281)
T 1mp8_A           21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI   82 (281)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEE
Confidence            479999999999998742    45799999865432 234679999999999  99999875

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=97.00  E-value=0.00045  Score=72.54  Aligned_cols=55  Identities=20%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..||+|.++..   .....+.+.+|+++|++  |||||+++
T Consensus        21 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~   81 (384)
T 4fr4_A           21 RAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLW   81 (384)
T ss_dssp             EEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            48999999999999864 5788999998642   23456789999999999  99999985

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=97.00  E-value=0.00071  Score=70.25  Aligned_cols=55  Identities=27%  Similarity=0.311  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||++......  ..+++.+|++++++  |||||+++
T Consensus        48 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~  107 (371)
T 4exu_A           48 THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLL  107 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhh
Confidence            4799999999999985 46889999999654322  24678999999999  99999875

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=97.00  E-value=0.00062  Score=67.80  Aligned_cols=51  Identities=31%  Similarity=0.533  Sum_probs=40.5

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. +|..||||+++..   ..+++..|.+++..    |||||+++
T Consensus        14 ~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~   68 (301)
T 3q4u_A           14 ECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFI   68 (301)
T ss_dssp             EEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEE
T ss_pred             EeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEE
Confidence            4799999999999997 5889999999643   34566667666553    99999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.99  E-value=8.2e-05  Score=70.17  Aligned_cols=66  Identities=23%  Similarity=0.296  Sum_probs=53.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      +.++.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++ +| .+..
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~  113 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence            568888888888876 67 8888889999999998887 688777777889999999998886 55 4433

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=96.99  E-value=0.00059  Score=69.43  Aligned_cols=55  Identities=27%  Similarity=0.352  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCC--hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQG--PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~--~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||++.......  .+.+.+|++++++  |||||+++
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   90 (331)
T 4aaa_A           31 GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLL   90 (331)
T ss_dssp             EEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEE
Confidence            48999999999999975 58899999986543322  3568899999999  99999875

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=96.99  E-value=0.0008  Score=66.81  Aligned_cols=55  Identities=27%  Similarity=0.420  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. ++..||||.+...  .....+.+.+|++++++  ||||++++
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   87 (287)
T 2wei_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLF   87 (287)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEE
Confidence            47999999999999975 6889999998643  23456789999999999  99999875

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=96.99  E-value=0.00059  Score=67.16  Aligned_cols=55  Identities=27%  Similarity=0.417  Sum_probs=46.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++..   .....+.+.+|++++++  ||||++++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   77 (276)
T 2h6d_A           17 DTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLY   77 (276)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEE
Confidence            47999999999999975 6889999998643   23446789999999999  99999875

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=96.98  E-value=0.0007  Score=66.69  Aligned_cols=55  Identities=24%  Similarity=0.298  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||+|.+.....  ...+.|.+|++++++  |||||+++
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   71 (279)
T 2w5a_A           12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY   71 (279)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             hhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEE
Confidence            47999999999999974 688999999975432  224679999999999  99999875

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=96.98  E-value=0.0005  Score=70.59  Aligned_cols=55  Identities=25%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-----ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-----GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-----~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||+++.....     ..+++.+|++++++  |||||+++
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   78 (346)
T 1ua2_A           16 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLL   78 (346)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEE
Confidence            47999999999999974 5889999999643221     13578999999999  99999875

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=96.98  E-value=0.00062  Score=68.50  Aligned_cols=55  Identities=29%  Similarity=0.465  Sum_probs=41.5

Q ss_pred             EeeccCCceeeeeeeec----CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA----DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~----~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...    .+..||||.++....  ...++|.+|++++++  |||||+++
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~  102 (313)
T 3brb_A           40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLL  102 (313)
T ss_dssp             EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCC
T ss_pred             cceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeee
Confidence            37999999999999864    234799999975432  234679999999999  99999875

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=96.97  E-value=0.00083  Score=67.19  Aligned_cols=55  Identities=24%  Similarity=0.449  Sum_probs=46.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. .++..||||.++... ....+++.+|++++++  ||||++++
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   86 (303)
T 3a7i_A           28 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYY   86 (303)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             hhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            4799999999999985 468899999997543 3446889999999998  99999875

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=96.97  E-value=0.00072  Score=73.17  Aligned_cols=55  Identities=25%  Similarity=0.385  Sum_probs=42.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.++...  ....+.+.+|+++|++  |||||+++
T Consensus        43 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~  102 (494)
T 3lij_A           43 KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLY  102 (494)
T ss_dssp             EEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            47999999999999964 67899999986542  3446789999999999  99999875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=96.97  E-value=0.00041  Score=72.37  Aligned_cols=55  Identities=27%  Similarity=0.440  Sum_probs=43.7

Q ss_pred             EeeccCCceeeeeeee--------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL--------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l--------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++..        ..+..||||+++.... ...+++.+|++++++   |||||+++
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~  141 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLL  141 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhhe
Confidence            4799999999999985        2335799999975432 234779999999987   99999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=96.96  E-value=0.00048  Score=69.88  Aligned_cols=68  Identities=25%  Similarity=0.346  Sum_probs=59.4

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC-CCCchHH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS-GSVPTSL  514 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~-G~iP~~l  514 (581)
                      .+.++.|+|++|.+++ +|+.+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.+. +.+|..+
T Consensus       190 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~  258 (317)
T 3o53_A          190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF  258 (317)
T ss_dssp             CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred             cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence            3679999999999985 5667999999999999999999 68999999999999999999998 5555544

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=96.96  E-value=0.00059  Score=69.08  Aligned_cols=55  Identities=24%  Similarity=0.318  Sum_probs=42.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--------CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--------QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--------~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.++....        .....|.+|+++|++  |||||+++
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   81 (322)
T 2ycf_A           16 KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIK   81 (322)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEe
Confidence            47999999999999864 578999999864321        123468999999999  99999875

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=96.96  E-value=0.00063  Score=69.44  Aligned_cols=55  Identities=25%  Similarity=0.454  Sum_probs=42.8

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++..      .++..||||.++... ....+.+.+|+++|.+   |||||+++
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  115 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLL  115 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            4799999999999986      245689999997542 3345789999999987   99999875

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=96.96  E-value=0.00063  Score=72.31  Aligned_cols=55  Identities=24%  Similarity=0.444  Sum_probs=45.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .+|..||||+++.....  ..+.+.+|+++|++  |+|||+++
T Consensus        32 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~   91 (432)
T 3n9x_A           32 HLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLY   91 (432)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEE
Confidence            4899999999999986 45789999999754322  24679999999999  99999875

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=96.96  E-value=0.00052  Score=68.63  Aligned_cols=54  Identities=24%  Similarity=0.388  Sum_probs=45.1

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC----CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS----SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.. .++..||||.++...    ....+.|.+|++++++  |||||+++
T Consensus        12 ~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   72 (305)
T 2wtk_C           12 LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLV   72 (305)
T ss_dssp             EEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEE
Confidence            789999999999996 467899999986431    2345789999999999  99999875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=96.96  E-value=0.00066  Score=69.82  Aligned_cols=64  Identities=23%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccc--cccCCCccccccccCccCCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE--FLSQLPLLRVLNLDGNKLSGSV  510 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L~ls~N~l~G~i  510 (581)
                      ++++.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|.  .+..+++|+.|++++|+.-+.+
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A          100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccccc
Confidence            45677777777776433333667777777777777776 3444  5666777777777776433333

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=96.95  E-value=0.00046  Score=68.26  Aligned_cols=55  Identities=27%  Similarity=0.480  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeecC----CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD----GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|...+    +..||||.++.... ...++|.+|++++++  ||||++++
T Consensus        18 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   79 (281)
T 3cc6_A           18 RILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLI   79 (281)
T ss_dssp             EEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEE
T ss_pred             EEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEE
Confidence            479999999999998643    23699999975432 235789999999999  99999875

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=96.95  E-value=0.00059  Score=71.16  Aligned_cols=55  Identities=18%  Similarity=0.286  Sum_probs=45.5

Q ss_pred             EeeccC--Cceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKG--GFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g--~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|  +||.||+++.. +|..||||+++....  ...+.+.+|++++++  |||||+++
T Consensus        31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~   92 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYR   92 (389)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             ecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEe
Confidence            489999  99999999975 688999999965432  224678899999999  99999975

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=96.95  E-value=0.00034  Score=74.74  Aligned_cols=55  Identities=24%  Similarity=0.346  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. ++..||||+++..   .....+.+.+|++++.+  |||||+++
T Consensus        80 ~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~  140 (437)
T 4aw2_A           80 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLH  140 (437)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEE
T ss_pred             EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            48999999999999986 4678999999642   22334569999999998  99999986

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=96.94  E-value=0.00073  Score=70.41  Aligned_cols=64  Identities=25%  Similarity=0.341  Sum_probs=56.9

Q ss_pred             CCceeEeecCCCCCceecchh-hhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPS-LSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~-l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .+.++.|+|++|.++ .+|.. +..+++|+.|+|++|.+++..|..+..+++|+.|++++|++++.
T Consensus       116 l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          116 VPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             CCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            467999999999998 56655 68999999999999999988888899999999999999999853

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=96.94  E-value=0.00057  Score=69.66  Aligned_cols=55  Identities=27%  Similarity=0.456  Sum_probs=42.9

Q ss_pred             EeeccCCceeeeeeee--------cCCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL--------ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l--------~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++..        .++..||||+++.... ...+++.+|++++++   |||||+++
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  107 (334)
T 2pvf_A           41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLL  107 (334)
T ss_dssp             EEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEE
Confidence            4799999999999986        3467899999975432 235679999999987   99999875

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=96.94  E-value=0.00063  Score=73.39  Aligned_cols=55  Identities=27%  Similarity=0.420  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||++...  .....+.+.+|+++|++  |||||+++
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~   87 (486)
T 3mwu_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLF   87 (486)
T ss_dssp             EEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            47999999999999964 6889999998532  23456789999999999  99999875

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=96.93  E-value=0.00027  Score=72.52  Aligned_cols=55  Identities=20%  Similarity=0.334  Sum_probs=45.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--------CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--------QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--------~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .++..||||.++....        ...+.+.+|+++|++  |||||+++
T Consensus        30 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~   95 (335)
T 3dls_A           30 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVL   95 (335)
T ss_dssp             EECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEE
T ss_pred             eEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            4799999999999984 5788999999975421        134578899999999  99999875

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=96.92  E-value=0.00046  Score=68.58  Aligned_cols=54  Identities=26%  Similarity=0.356  Sum_probs=45.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||.++.. ....+++.+|++++++  ||||++++
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~   68 (303)
T 1zy4_A           12 AVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYY   68 (303)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             heeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHH
Confidence            4799999999999996 47889999999542 2335779999999999  99999874

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=96.92  E-value=0.00046  Score=73.13  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. ++..||+|+++..   .....+.+.+|++++++  |||||+++
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~  135 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLF  135 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            48999999999999975 5789999998642   23345678999999998  99999986

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=96.92  E-value=0.00063  Score=69.26  Aligned_cols=55  Identities=22%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|..||+|.++..   .....+.+.+|+.++++  |||||+++
T Consensus        12 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~   72 (318)
T 1fot_A           12 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMW   72 (318)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEE
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEe
Confidence            47999999999999874 6889999999643   23456778999999999  99999875

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=96.92  E-value=0.00063  Score=68.30  Aligned_cols=55  Identities=25%  Similarity=0.396  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++..      .++..||||.++..... ..+++.+|++++.+   |||||+++
T Consensus        33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~   97 (316)
T 2xir_A           33 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   97 (316)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence            4799999999999974      34678999999754322 34679999999988   89999875

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=96.92  E-value=0.00098  Score=65.56  Aligned_cols=55  Identities=22%  Similarity=0.255  Sum_probs=45.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||+++....  ....++.+|+..+.+   |||||+++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~   77 (289)
T 1x8b_A           17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYF   77 (289)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEE
T ss_pred             hhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeee
Confidence            47999999999999975 788999999975432  235678899988887   99999875

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=96.91  E-value=0.00053  Score=69.21  Aligned_cols=55  Identities=29%  Similarity=0.486  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|...      .+..||||.++.... ....+|.+|++++++  ||||++++
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   94 (322)
T 1p4o_A           31 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL   94 (322)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred             eEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence            47999999999999864      367899999975432 234579999999999  99999875

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=96.90  E-value=0.00089  Score=67.79  Aligned_cols=52  Identities=21%  Similarity=0.452  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..||||.++.   ...+.+.+|+++|.+   ||||++++
T Consensus        42 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~   97 (330)
T 3nsz_A           42 RKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLA   97 (330)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEee
Confidence            4899999999999985 5788999999964   345789999999998   99999875

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=96.90  E-value=0.00071  Score=68.85  Aligned_cols=54  Identities=17%  Similarity=0.268  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..+|+|.++.. ......+.+|+++|.+  |||||+++
T Consensus        11 ~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~   67 (321)
T 1tki_A           11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLH   67 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEE
T ss_pred             eEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEe
Confidence            47999999999999864 5789999998643 2234678999999999  99999875

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=96.90  E-value=0.00082  Score=67.70  Aligned_cols=55  Identities=25%  Similarity=0.431  Sum_probs=45.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.++......   .++|.+|++++++  ||||++++
T Consensus        40 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~  100 (309)
T 2h34_A           40 RLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIH  100 (309)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEE
Confidence            47999999999999964 67899999997543222   3679999999999  99999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=96.89  E-value=0.00029  Score=71.54  Aligned_cols=37  Identities=38%  Similarity=0.496  Sum_probs=24.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG  484 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G  484 (581)
                      +.++.|+|++|.+++..+  +..+++|+.|+|++|++++
T Consensus        58 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE
T ss_pred             CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc
Confidence            456677777777765443  6666777777777776653

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=96.89  E-value=0.00096  Score=67.00  Aligned_cols=53  Identities=25%  Similarity=0.468  Sum_probs=41.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.+...  ...+++.+|++++.+  ||||++++
T Consensus        35 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~   90 (314)
T 3com_A           35 EKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYY   90 (314)
T ss_dssp             EECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEE
Confidence            47999999999999975 5889999999653  345789999999999  99999875

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=96.89  E-value=0.00067  Score=73.30  Aligned_cols=55  Identities=29%  Similarity=0.435  Sum_probs=45.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|... +|..||||.++..   .....+.+.+|+++|++  |||||+++
T Consensus        22 ~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~   82 (476)
T 2y94_A           22 DTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLY   82 (476)
T ss_dssp             EEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            47999999999999964 7899999999643   22345789999999999  99999875

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=96.89  E-value=0.00048  Score=69.88  Aligned_cols=55  Identities=33%  Similarity=0.477  Sum_probs=41.8

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|+.      .++..||||.+.... .....+|.+|++++++  |||||+++
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   99 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCI   99 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEE
Confidence            4799999999999985      346689999996432 2335689999999999  99999875

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=96.89  E-value=0.00067  Score=71.50  Aligned_cols=55  Identities=16%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. ++..+|||+++...   ....+.+.+|.++|.+   |||||+++
T Consensus        58 ~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~  119 (396)
T 4dc2_A           58 RVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLH  119 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeE
Confidence            48999999999999975 57789999997532   2334678899999876   99999986

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=96.88  E-value=0.00079  Score=66.51  Aligned_cols=55  Identities=22%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||+|.+.....  ...+++.+|++++++  ||||++++
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   71 (284)
T 3kk8_A           12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLH   71 (284)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             hhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEE
Confidence            47999999999999864 588999999965432  234678899999999  99999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.88  E-value=0.00048  Score=73.92  Aligned_cols=66  Identities=26%  Similarity=0.416  Sum_probs=33.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCC--CccccccCC-------------CccccccccCccCCC--
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG--SIPEFLSQL-------------PLLRVLNLDGNKLSG--  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G--~iP~~l~~l-------------~~L~~L~ls~N~l~G--  508 (581)
                      ++++.|+|++|.++ .+|.   .+++|+.|+|++|+++|  .+|..+..+             ++|+.|++++|+++|  
T Consensus       337 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~  412 (454)
T 1jl5_A          337 PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFP  412 (454)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------
T ss_pred             CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccc
Confidence            46778888888887 4665   46788888888888888  788877776             678888888888887  


Q ss_pred             CCchHHH
Q 008008          509 SVPTSLV  515 (581)
Q Consensus       509 ~iP~~l~  515 (581)
                      .||.++.
T Consensus       413 ~iP~sl~  419 (454)
T 1jl5_A          413 DIPESVE  419 (454)
T ss_dssp             -------
T ss_pred             cchhhHh
Confidence            7776653

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=96.88  E-value=0.00093  Score=69.60  Aligned_cols=51  Identities=22%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||++....    +...+|+++|++  |||||+++
T Consensus        13 ~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~   66 (383)
T 3eb0_A           13 KTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLV   66 (383)
T ss_dssp             EEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEE
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchh
Confidence            4799999999999985 678999999986432    223479999999  99999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=96.88  E-value=0.00093  Score=74.92  Aligned_cols=66  Identities=29%  Similarity=0.396  Sum_probs=32.5

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcccccc--CCCccccccccCccCCCCCch
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLS--QLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~--~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      .++.|+|++|.+++..|..+..+++|+.|+|++|.+++..|..+.  .+++|+.|++++|++++..|.
T Consensus       122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  189 (680)
T 1ziw_A          122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG  189 (680)
T ss_dssp             TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred             CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence            455555555555544444455555555555555555544443332  334555555555555544443

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=96.88  E-value=0.0008  Score=69.86  Aligned_cols=55  Identities=29%  Similarity=0.297  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .++..||||++.....  ...+++.+|++++++  |||||+++
T Consensus        31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~   90 (371)
T 2xrw_A           31 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLL   90 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceE
Confidence            4799999999999985 4688999999965322  224678999999998  99999875

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=96.87  E-value=0.0011  Score=66.02  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..+|+|.+......   ..+.+.+|++++++  |||||+++
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   81 (294)
T 2rku_A           21 RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH   81 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeee
Confidence            48999999999999975 5678999998654322   24678999999999  99999875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=96.87  E-value=0.00031  Score=71.03  Aligned_cols=65  Identities=20%  Similarity=0.114  Sum_probs=55.8

Q ss_pred             CCceeEeecCCCCCceecc----hhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          445 PPKIISLNLTSEGLTGKIS----PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip----~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .+.++.|+|++|.+++.++    ..+..+++|+.|+|++|.+++..|..+..+++|++|+|++|++.+.
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  184 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGE  184 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHH
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccc
Confidence            3678999999999987655    3456789999999999999988888999999999999999998753

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=96.86  E-value=0.00074  Score=68.80  Aligned_cols=51  Identities=18%  Similarity=0.239  Sum_probs=43.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .||+|+||.||++... ++..||||.++..   ...++.+|++++.+   |||||+++
T Consensus        18 ~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~   72 (325)
T 3kn6_A           18 PLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLH   72 (325)
T ss_dssp             CSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             ccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEE
Confidence            6899999999999974 6789999999542   35678899999887   99999875

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=96.86  E-value=0.001  Score=67.69  Aligned_cols=55  Identities=33%  Similarity=0.558  Sum_probs=44.3

Q ss_pred             EeeccCCceeeeeeee-cCCc----eEEEEeeccC-CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGS----EVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~----~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++.    .||+|.+... .....++|.+|++++++  |||||+++
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~   83 (327)
T 3lzb_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL   83 (327)
T ss_dssp             EEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred             EEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEE
Confidence            4899999999999995 3444    4688888643 34456889999999999  99999875

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=96.86  E-value=0.0008  Score=71.61  Aligned_cols=52  Identities=29%  Similarity=0.271  Sum_probs=42.8

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||+||.+...+|..||||++...   ..+.+.+|+++|.+   |||||+++
T Consensus        21 ~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~   75 (434)
T 2rio_A           21 KILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYY   75 (434)
T ss_dssp             EEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             CeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEE
Confidence            379999999997766677999999998643   24578899999975   99999875

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=96.85  E-value=0.00032  Score=71.32  Aligned_cols=55  Identities=27%  Similarity=0.364  Sum_probs=42.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||+++..... ....+.+|+++|++  |||||+++
T Consensus         8 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   66 (324)
T 3mtl_A            8 DKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLH   66 (324)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEE
T ss_pred             EEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeee
Confidence            47999999999999975 6889999999654322 23456789999999  99999875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=96.85  E-value=0.0011  Score=71.96  Aligned_cols=56  Identities=27%  Similarity=0.355  Sum_probs=43.0

Q ss_pred             EEeeccCCceeeeeeeec-CCceEEEEeeccCCC-------------CChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-------------QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-------------~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+.||+|+||.||++... ++..||||.++....             ...+++.+|+++|++  |||||+++
T Consensus        41 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~  112 (504)
T 3q5i_A           41 VRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLF  112 (504)
T ss_dssp             EEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            348999999999999964 578999999864321             235689999999999  99999875

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=96.83  E-value=0.00081  Score=75.33  Aligned_cols=56  Identities=30%  Similarity=0.415  Sum_probs=41.6

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHH---HHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTE---VELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~E---i~~l~~--H~NlV~l~  580 (581)
                      +++||+|+||.||+++- .+|..||||.++..   ..+......+|   ++++++  |||||+|+
T Consensus       194 ~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~  258 (689)
T 3v5w_A          194 HRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMS  258 (689)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEE
T ss_pred             EEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEE
Confidence            35899999999999996 46889999999642   22333444444   566666  99999986

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=96.83  E-value=0.00077  Score=69.62  Aligned_cols=55  Identities=22%  Similarity=0.303  Sum_probs=46.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|..||||.++..   .....+.+.+|+++|++  |||||+++
T Consensus        47 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~  107 (350)
T 1rdq_E           47 KTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLE  107 (350)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            48999999999999964 6889999998643   23456789999999999  99999875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=96.82  E-value=0.00083  Score=68.57  Aligned_cols=55  Identities=31%  Similarity=0.485  Sum_probs=43.6

Q ss_pred             EeeccCCceeeeeeeecC-----CceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-----GSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-----g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|....     +..||||.++.... ....+|.+|++++++  |||||+++
T Consensus        50 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~  112 (333)
T 1mqb_A           50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLE  112 (333)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             cEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            379999999999998743     23699999975432 224579999999999  99999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=96.82  E-value=0.00085  Score=68.52  Aligned_cols=64  Identities=31%  Similarity=0.371  Sum_probs=40.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|.+++.  +.+..+++|+.|+|++|.+++..|..++.+++|+.|++++|++++..|
T Consensus       265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            4566666666666542  346666666666666666666666666666666666666666665544

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=96.81  E-value=0.00078  Score=69.49  Aligned_cols=55  Identities=24%  Similarity=0.360  Sum_probs=45.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|..||||.++..   .....+.+..|.++|.+   |||||+++
T Consensus        23 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~   84 (345)
T 1xjd_A           23 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMF   84 (345)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEE
Confidence            48999999999999974 6789999999643   23456778899998875   99999875

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=96.81  E-value=0.0012  Score=66.33  Aligned_cols=55  Identities=20%  Similarity=0.357  Sum_probs=45.5

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCC--CChHHHHHHHHHHhc----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSS--QGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      +.||+|+||.||++...++..||||.+.....  +..++|.+|++++.+    |+|||+++
T Consensus        34 ~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~   94 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLY   94 (313)
T ss_dssp             EEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEE
T ss_pred             EEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEE
Confidence            48999999999999988899999999965432  235789999999887    59999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=96.81  E-value=0.00068  Score=68.86  Aligned_cols=55  Identities=27%  Similarity=0.414  Sum_probs=43.7

Q ss_pred             EeeccCCceeeeeeee-cCCc----eEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGS----EVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~----~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.. .++.    .||+|.+.... .+..+++.+|++++++  |||||+++
T Consensus        19 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   81 (325)
T 3kex_A           19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLL   81 (325)
T ss_dssp             EEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEE
T ss_pred             eeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEE
Confidence            4799999999999996 3444    38888885433 3456788999999998  99999875

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=96.80  E-value=0.0012  Score=68.00  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC---ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ---GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. ++..||||.++.....   ..+.+.+|++++.+   |||||+++
T Consensus        15 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~   76 (345)
T 3a8x_A           15 RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLH   76 (345)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEE
Confidence            48999999999999975 5789999999754322   24568899999875   99999875

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=96.80  E-value=0.00063  Score=70.05  Aligned_cols=55  Identities=20%  Similarity=0.217  Sum_probs=45.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..||+|.++..... ..+.+.+|+++|++  |||||+++
T Consensus        39 ~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~   97 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFY   97 (360)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEE
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEe
Confidence            48999999999999975 6789999999754322 24679999999999  99999875

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=96.78  E-value=0.00064  Score=67.36  Aligned_cols=55  Identities=33%  Similarity=0.506  Sum_probs=36.9

Q ss_pred             EeeccCCceeeeeeeec--CCc--eEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA--DGS--EVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~--~g~--~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...  ++.  .||||.++...   ....++|.+|++++.+  |||||+++
T Consensus        24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   87 (291)
T 1u46_A           24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLY   87 (291)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEE
Confidence            47999999999999863  333  68999987542   2235789999999999  99999875

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=96.77  E-value=0.0012  Score=67.35  Aligned_cols=53  Identities=21%  Similarity=0.343  Sum_probs=40.2

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCC--------CCChHHHHHHHHHHhc-----------CCCcccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASS--------SQGPKQFRTEVELIDY-----------YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~--------~~~~~ef~~Ei~~l~~-----------H~NlV~l  579 (581)
                      ..||+|+||.||+++. +|+.||||+++...        ....+++.+|+++|++           |||||++
T Consensus        26 ~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           26 EKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             EEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             eeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            3799999999999987 67999999997542        1223778888877542           6777765

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=96.77  E-value=0.0012  Score=66.21  Aligned_cols=55  Identities=27%  Similarity=0.336  Sum_probs=42.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC-----CCChHHHHHHHHHHhc-----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-----SQGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-----~~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .+|..||||+++...     ......+.+|++++.+     |||||+++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~   80 (308)
T 3g33_A           15 AEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLM   80 (308)
T ss_dssp             EEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEee
Confidence            4799999999999995 568899999986332     1224577788877665     99999875

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=96.77  E-value=0.0013  Score=66.43  Aligned_cols=54  Identities=24%  Similarity=0.596  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. .+|..||||.+.... ...+++.+|++++.+   ||||++++
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~   87 (326)
T 2x7f_A           30 ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYY   87 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEE
T ss_pred             EEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeee
Confidence            4799999999999997 478899999996442 345789999999987   99999875

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=96.76  E-value=0.00072  Score=69.99  Aligned_cols=55  Identities=27%  Similarity=0.427  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|..||||+++..   .....+.+.+|+++|.+   |||||+++
T Consensus        29 ~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~   90 (353)
T 3txo_A           29 RVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLF   90 (353)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             EEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEE
Confidence            48999999999999964 5889999999643   23345678899999885   99999875

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=96.75  E-value=0.00043  Score=69.01  Aligned_cols=55  Identities=20%  Similarity=0.360  Sum_probs=30.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .++..||||++.... ....+++.+|++++++  |||||+++
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   79 (303)
T 2vwi_A           21 EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYY   79 (303)
T ss_dssp             EECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEE
T ss_pred             heeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEE
Confidence            4799999999999985 468899999986543 3345789999999999  99999875

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=96.74  E-value=0.00092  Score=68.54  Aligned_cols=54  Identities=26%  Similarity=0.281  Sum_probs=34.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||++.... .....+.+|++.+++  |||||+++
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~   85 (360)
T 3e3p_A           29 RMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQ   85 (360)
T ss_dssp             ----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHH
Confidence            3799999999999997 468899999986542 334567788888887  99999874

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=96.74  E-value=0.0012  Score=65.40  Aligned_cols=55  Identities=35%  Similarity=0.445  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||.+...   .....+++.+|++++++  ||||++++
T Consensus        20 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   80 (284)
T 2vgo_A           20 RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMY   80 (284)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             heecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEE
Confidence            47999999999999975 5778999998542   23345789999999999  99999875

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=96.73  E-value=0.00083  Score=71.86  Aligned_cols=55  Identities=20%  Similarity=0.277  Sum_probs=43.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .+|..+|+|.+.....  ...+.+.+|++++++  |||||+++
T Consensus        17 ~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~   76 (444)
T 3soa_A           17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLH   76 (444)
T ss_dssp             EEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEE
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEE
Confidence            4799999999999985 5788999999865432  224678999999999  99999875

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=96.73  E-value=0.00048  Score=73.03  Aligned_cols=55  Identities=18%  Similarity=0.313  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. +|+.||||+++...   ....+.+.+|+++|.+  |||||+++
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~  127 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLH  127 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEE
Confidence            48999999999999974 68899999996421   2234568999999998  99999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.72  E-value=0.00077  Score=76.05  Aligned_cols=55  Identities=18%  Similarity=0.310  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeec--CCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA--DGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~--~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...  +|+.||||++..... ...+.|.+|+++|++  |||||+++
T Consensus        86 ~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~  145 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIF  145 (681)
T ss_dssp             EEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEe
Confidence            47999999999999974  588999999865322 234678999999999  99999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=96.72  E-value=0.0009  Score=74.76  Aligned_cols=67  Identities=28%  Similarity=0.336  Sum_probs=60.1

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhh
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVAR  517 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~  517 (581)
                      +.++.|+|++|.++ .+|.   .+++|+.|+|++|+++ .+|..+..+++|+.|+|++|.++|.+|..+...
T Consensus       241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            57999999999998 5776   6789999999999999 899999999999999999999999988877554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=96.72  E-value=0.00048  Score=66.69  Aligned_cols=60  Identities=22%  Similarity=0.331  Sum_probs=43.2

Q ss_pred             CceeEeecCC-CCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccc---cccccCc-cCC
Q 008008          446 PKIISLNLTS-EGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLR---VLNLDGN-KLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~-n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~---~L~ls~N-~l~  507 (581)
                      +.++.|+|++ |.+++..+..+..+++|+.|+|++|.+++ +|. +..+++|+   .|++++| +++
T Consensus        80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C           80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh
Confidence            4677777777 77775545567777778888888887775 666 66666666   7788877 665

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=96.72  E-value=0.0018  Score=67.15  Aligned_cols=55  Identities=16%  Similarity=0.269  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCC--------hHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQG--------PKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~--------~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++......        .+.+.+|++++.+   ||||++++
T Consensus       100 ~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  166 (365)
T 2y7j_A          100 DVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI  166 (365)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence            47999999999999985 78999999987543221        3467899999886   99999874

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=96.72  E-value=0.00084  Score=74.19  Aligned_cols=56  Identities=27%  Similarity=0.393  Sum_probs=46.8

Q ss_pred             EEeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+.||+|+||.||++... +|..||||+++..   .......+.+|+++|.+  |||||+++
T Consensus       189 ~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~  250 (576)
T 2acx_A          189 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLA  250 (576)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEE
Confidence            358999999999999974 6889999999642   23456779999999999  99999985

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=96.71  E-value=0.0012  Score=67.15  Aligned_cols=55  Identities=20%  Similarity=0.303  Sum_probs=45.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC--CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS--SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||++... +|..||||.++...  ....+++.+|++++.+   |||||+++
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~   95 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLH   95 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            37999999999999864 68899999986532  2335789999999987   79999875

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=96.71  E-value=0.0016  Score=66.32  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC---ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ---GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~---~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..+|+|.+......   ..+.|.+|++++++  |+|||+++
T Consensus        47 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~  107 (335)
T 2owb_A           47 RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH  107 (335)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            47999999999999975 4678999998654222   34678999999999  99999875

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=96.71  E-value=0.001  Score=65.65  Aligned_cols=55  Identities=35%  Similarity=0.433  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++... ++..||||.+...   .....+++.+|++++++  ||||++++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~   75 (279)
T 3fdn_A           15 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLY   75 (279)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchh
Confidence            47999999999999864 5678999998532   22345779999999999  99999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.70  E-value=0.00064  Score=75.13  Aligned_cols=68  Identities=21%  Similarity=0.263  Sum_probs=56.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCC-------CeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSL-------ENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS  518 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L-------~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  518 (581)
                      +.++.|+|++|.++ .+|. +..  +|       +.|+|++|+++ .||..+..+++|+.|+|++|.|++.+|..+....
T Consensus       180 ~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          180 ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            46889999999998 6776 544  66       99999999998 6999999999999999999999999998886643

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=96.70  E-value=0.0014  Score=68.82  Aligned_cols=51  Identities=25%  Similarity=0.464  Sum_probs=41.4

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++..++..+|+|++.....    ...+|+++|++  |||||+++
T Consensus        46 ~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~   98 (394)
T 4e7w_A           46 KVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLK   98 (394)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEE
Confidence            48999999999999987777799998854322    22379999999  99999875

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=96.69  E-value=0.001  Score=66.13  Aligned_cols=55  Identities=20%  Similarity=0.214  Sum_probs=44.1

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC---------ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ---------GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~---------~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++.....         ..+.+.+|++++.+   ||||++++
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~   90 (298)
T 1phk_A           23 EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLK   90 (298)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             eeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeee
Confidence            47999999999999974 6789999999654311         13568899999987   99999875

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=96.67  E-value=0.00053  Score=73.13  Aligned_cols=55  Identities=27%  Similarity=0.313  Sum_probs=36.5

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||.++..   .....+++.+|+++|++  |||||+++
T Consensus       154 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~  214 (446)
T 4ejn_A          154 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALK  214 (446)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEE
T ss_pred             EEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEE
Confidence            4799999999999985 56889999999643   33445778999999999  99999875

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=96.67  E-value=0.0013  Score=67.18  Aligned_cols=60  Identities=23%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      ++++.|+|++|.+++..|..+..+++|+.|+|++|.+++..|  +..+++|+.|++++|.++
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            567777777777777667777777777777777777776555  667777777777777664

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=96.66  E-value=0.0013  Score=68.68  Aligned_cols=55  Identities=22%  Similarity=0.349  Sum_probs=36.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||++.....  ...+.+.+|+.+|.+   |||||+++
T Consensus        15 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~   75 (388)
T 3oz6_A           15 KKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLL   75 (388)
T ss_dssp             EC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             EEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeee
Confidence            4799999999999985 5688999999964322  234678899999987   99999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.65  E-value=0.002  Score=63.56  Aligned_cols=59  Identities=31%  Similarity=0.434  Sum_probs=49.8

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .+.++.|+|++|.+++. ++ +..+++|+.|+|++|++++ +|....  ++|+.|+|++|++++
T Consensus        62 l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~  120 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD  120 (263)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB
T ss_pred             CCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC
Confidence            36799999999999864 44 9999999999999999986 554333  899999999999986

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=96.65  E-value=0.00089  Score=71.29  Aligned_cols=52  Identities=25%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      .+||+|+||.|+.....+|+.||||++...   ..+.+.+|+++|.+   |||||+++
T Consensus        30 ~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~l~   84 (432)
T 3p23_A           30 DVLGHGAEGTIVYRGMFDNRDVAVKRILPE---CFSFADREVQLLRESDEHPNVIRYF   84 (432)
T ss_dssp             EEEEECGGGCEEEEEESSSSEEEEEEECTT---TEEECHHHHHHHHHSCCCTTBCCEE
T ss_pred             CeeecCcCEEEEEEEEeCCeEEEEEEECHH---HHHHHHHHHHHHHhccCCCCcCeEE
Confidence            379999999966555567899999999643   23457789999986   99999975

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=96.65  E-value=0.0012  Score=67.14  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=43.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+|+. .+|..||||.+....  ..+++.+|++++++   ||||++++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~   71 (330)
T 2izr_A           15 KKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVY   71 (330)
T ss_dssp             EECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEE
T ss_pred             EEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEE
Confidence            4799999999999995 678899999986442  23568999999888   99999875

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=96.64  E-value=0.0014  Score=66.04  Aligned_cols=55  Identities=22%  Similarity=0.342  Sum_probs=41.9

Q ss_pred             EeeccCCceeeeeeee--cCCceEEEEeeccCC--CCChHHHHHHHHHHhc-----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL--ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l--~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      ..||+|+||.||++..  .+|..||||+++...  ......+.+|++++.+     |||||+++
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~   80 (326)
T 1blx_A           17 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLF   80 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEE
T ss_pred             eeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeee
Confidence            4899999999999997  467899999986432  2234567777776653     99999875

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=96.64  E-value=0.0014  Score=67.95  Aligned_cols=54  Identities=9%  Similarity=0.031  Sum_probs=36.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC---ChHHHHHH---HHHHhc-CCCcccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ---GPKQFRTE---VELIDY-YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~---~~~ef~~E---i~~l~~-H~NlV~l  579 (581)
                      ..||+|+||.||++.. .+|..||||+++.....   ..+.+.+|   +++|++ |||||++
T Consensus        68 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~  129 (371)
T 3q60_A           68 EPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARD  129 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             eeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhh
Confidence            4799999999999996 47889999999765432   23567777   567776 9998764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.61  E-value=0.00039  Score=70.62  Aligned_cols=63  Identities=25%  Similarity=0.294  Sum_probs=38.6

Q ss_pred             CceeEeecCCCCCcee-cchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCc-cCCC
Q 008008          446 PKIISLNLTSEGLTGK-ISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN-KLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~-ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N-~l~G  508 (581)
                      ++++.|+|++|.+++. +|..+..+++|+.|+|++|.+++.+|..++++++|+.|++++| .+++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCH
Confidence            4566666666665544 5555666666666666666666666666666666666666666 4544

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=96.60  E-value=0.0018  Score=65.61  Aligned_cols=54  Identities=19%  Similarity=0.389  Sum_probs=41.9

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCC-CChHHHHHHHH-HHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS-QGPKQFRTEVE-LIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~-~~~~ef~~Ei~-~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++... +|..||||+++.... ...+++..|+. +++.  |||||+++
T Consensus        29 ~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~   87 (327)
T 3aln_A           29 EIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFY   87 (327)
T ss_dssp             EEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEE
T ss_pred             eeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeee
Confidence            7899999999999974 688999999975432 23456777776 4555  99999875

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=96.60  E-value=0.0012  Score=72.52  Aligned_cols=56  Identities=25%  Similarity=0.423  Sum_probs=46.8

Q ss_pred             EEeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+++.. +|..||||+++..   .....+.+.+|+++|++  |||||+++
T Consensus       190 ~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~  251 (543)
T 3c4z_A          190 FRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLA  251 (543)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEE
Confidence            357999999999999974 6889999999643   23456789999999999  99999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=96.60  E-value=0.0022  Score=64.29  Aligned_cols=58  Identities=34%  Similarity=0.523  Sum_probs=32.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      +.++.|+|++|.+++.  +.+..+++|+.|+|++|++++..|  +..+++|+.|++++|+++
T Consensus       134 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~  191 (291)
T 1h6t_A          134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  191 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence            3455566666665542  345556666666666666654333  555566666666666555

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=96.60  E-value=0.00066  Score=70.06  Aligned_cols=55  Identities=24%  Similarity=0.393  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccCC----CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSASS----SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~~----~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+++.    .+|..||||+++...    ....+.+.+|+++|.+   |||||+++
T Consensus        60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~  125 (355)
T 1vzo_A           60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLH  125 (355)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEE
T ss_pred             EEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEE
Confidence            4799999999999987    468899999986432    2345678889999887   99999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.57  E-value=0.0019  Score=71.88  Aligned_cols=61  Identities=28%  Similarity=0.366  Sum_probs=51.1

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .+.|+.|+|++|.+++..|  +..|++|+.|+|++|++++ +| .+..|++|+.|+|++|.+.+.
T Consensus       152 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          152 LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEECC
T ss_pred             cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcCC
Confidence            3678899999999987655  8889999999999999986 44 588899999999999988764

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=96.57  E-value=0.0018  Score=65.72  Aligned_cols=51  Identities=31%  Similarity=0.531  Sum_probs=42.2

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      ..||+|+||.||++.. +|..||||.++..   ..+++.+|++++..    |||||+++
T Consensus        48 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~  102 (342)
T 1b6c_B           48 ESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFI  102 (342)
T ss_dssp             EEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEE
T ss_pred             eeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence            4799999999999997 4889999999643   35678888888764    99999875

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.55  E-value=0.00014  Score=68.56  Aligned_cols=60  Identities=27%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      ++++.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|++++|++++
T Consensus        70 ~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           70 ENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             TTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC
T ss_pred             CCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc
Confidence            45667777777766 566666666777777777777765 45 46666777777777777663

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=96.54  E-value=0.0015  Score=67.61  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=45.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. +|..||||.++..   .....+.+..|.++|.+   ||||++++
T Consensus        26 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~   87 (353)
T 2i0e_A           26 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLH   87 (353)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEE
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEE
Confidence            48999999999999975 4788999999643   23456778999999986   99999875

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=96.51  E-value=0.0019  Score=67.96  Aligned_cols=49  Identities=29%  Similarity=0.280  Sum_probs=41.2

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +||+|+||.||++... +|..||||+++.     ..++.+|++++.+   |||||+++
T Consensus        69 ~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~  121 (400)
T 1nxk_A           69 VLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIV  121 (400)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             eeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEe
Confidence            6899999999999864 678999999953     3578889988765   99999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=96.51  E-value=0.00063  Score=70.89  Aligned_cols=64  Identities=23%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             ceeEeecCCCCCcee----cchhhhc--ccCCCeEeCCCCCCCC----Cccccc-cCCCccccccccCccCCCCC
Q 008008          447 KIISLNLTSEGLTGK----ISPSLSN--LKSLENLDLSNNSLTG----SIPEFL-SQLPLLRVLNLDGNKLSGSV  510 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~----ip~~l~~--l~~L~~L~Ls~N~l~G----~iP~~l-~~l~~L~~L~ls~N~l~G~i  510 (581)
                      .++.|+|++|.+++.    ++..+..  +++|+.|+|++|.+++    .+|..+ .++++|+.|++++|.+++..
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            344455555554432    3333322  4445555555555544    244444 33455555555555554444

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=96.51  E-value=0.0019  Score=65.50  Aligned_cols=55  Identities=25%  Similarity=0.459  Sum_probs=43.5

Q ss_pred             EeeccCCceeeeeeeecC-C-----ceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-G-----SEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-g-----~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++.... +     ..||||.++.... ...+.+.+|++++++   |||||+++
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~  116 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLL  116 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEE
Confidence            479999999999998632 2     4799999975432 234679999999987   99999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=96.50  E-value=0.0029  Score=70.45  Aligned_cols=60  Identities=33%  Similarity=0.494  Sum_probs=51.9

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++|+.|+|++|.+++.  ..+..|++|+.|+|++|.+++..|  +..+++|+.|+|++|++++
T Consensus       130 l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          130 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence            36788999999999864  678899999999999999987766  8889999999999999986

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=96.49  E-value=0.0021  Score=64.25  Aligned_cols=50  Identities=28%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .++..||||+++.     .+.+.+|++++.+   |||||+++
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~   77 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIV   77 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHH
Confidence            3689999999999986 5688999999953     3578899988855   99999875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.49  E-value=0.00093  Score=68.79  Aligned_cols=77  Identities=25%  Similarity=0.279  Sum_probs=55.4

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecch-hhhcccCCCeEeCCCCCCCCCcccc-ccCCCcccc-cc
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPEF-LSQLPLLRV-LN  500 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~-~l~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~-L~  500 (581)
                      .|.|..|.|+..+..      +..++.|+|++|.++ .||+ .|..+++|+.|+|++|++.+.+|.. +..+++|.. +.
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            367888999765432      356899999999998 4554 6899999999999999988777653 345555443 34


Q ss_pred             ccCccCC
Q 008008          501 LDGNKLS  507 (581)
Q Consensus       501 ls~N~l~  507 (581)
                      +.+|++.
T Consensus        87 ~~~N~l~   93 (350)
T 4ay9_X           87 EKANNLL   93 (350)
T ss_dssp             EEETTCC
T ss_pred             ccCCccc
Confidence            4455555

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=96.47  E-value=0.0021  Score=65.03  Aligned_cols=55  Identities=27%  Similarity=0.467  Sum_probs=41.8

Q ss_pred             EeeccCCceeeeeeeec-CCce--EEEEeeccC-CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSE--VAIKMLSAS-SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~--VAVK~l~~~-~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. ++..  ||||+++.. .....++|.+|++++.+   |||||+++
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~   92 (327)
T 1fvr_A           31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL   92 (327)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEE
T ss_pred             eeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhc
Confidence            47999999999999964 4554  599998753 33445789999999998   99999875

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=96.47  E-value=0.0019  Score=72.66  Aligned_cols=55  Identities=25%  Similarity=0.347  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeeecC----CceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD----GSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|....    +..||||+++..... ..++|.+|++++++  |||||+++
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~  457 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI  457 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            479999999999998742    457999998654322 24679999999999  99999875

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=96.47  E-value=0.0008  Score=69.14  Aligned_cols=49  Identities=8%  Similarity=0.104  Sum_probs=40.4

Q ss_pred             EeeccCCceeeeeeeecC---------CceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccc
Q 008008          526 RILGKGGFGTVYHGYLAD---------GSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~---------g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l  579 (581)
                      ..||+|+||.||+++...         +..||||.+...     +.+.+|++++.+  |||||++
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~  107 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNK  107 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHH
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhh
Confidence            479999999999999753         789999999643     478999999999  9999874

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=96.47  E-value=0.0023  Score=63.17  Aligned_cols=55  Identities=22%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHH-HHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTE-VELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~E-i~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||+++.... ....++..| ..+++.  |||||+++
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~   72 (290)
T 3fme_A           13 MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFY   72 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             HhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence            4799999999999996 5788999999965422 222344444 444555  99999875

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=96.44  E-value=0.002  Score=66.29  Aligned_cols=51  Identities=18%  Similarity=0.229  Sum_probs=40.8

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.++....    ++.+|+++|.+   |||||+++
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~   82 (342)
T 2qr7_A           28 EDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLK   82 (342)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEE
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEE
Confidence            47999999999999864 678999999965432    34567777766   99999875

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=96.42  E-value=0.0038  Score=62.54  Aligned_cols=62  Identities=40%  Similarity=0.578  Sum_probs=52.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|.+++ + +.+..+++|+.|+|++|++++.  ..++.+++|+.|++++|++++..|
T Consensus       112 ~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          112 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             CCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence            578899999999886 3 5788999999999999999865  578899999999999999987555

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=96.39  E-value=0.0028  Score=64.03  Aligned_cols=51  Identities=25%  Similarity=0.452  Sum_probs=39.5

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      +.||+|+||.||+|+.. +..||||++...   ....+..|.+++..    |||||+++
T Consensus        43 ~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~   97 (337)
T 3mdy_A           43 KQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFI   97 (337)
T ss_dssp             EEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEE
T ss_pred             eEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEE
Confidence            48999999999999976 889999998543   23455556655544    99999875

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.37  E-value=0.00011  Score=78.84  Aligned_cols=49  Identities=12%  Similarity=-0.039  Sum_probs=15.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPL  495 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~  495 (581)
                      .+++.|++++|.+ |.+|.++++++.|+.|++++|.++|.+|..++++..
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~   59 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE   59 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHH
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchh
Confidence            3455666666666 566666666666666666666666666665555443

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=96.37  E-value=0.0034  Score=63.61  Aligned_cols=51  Identities=29%  Similarity=0.570  Sum_probs=39.3

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHh--c--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELID--Y--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~--~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|+. ++..||||+++..   ..+++..|.+++.  .  |+||++++
T Consensus        19 ~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~   73 (336)
T 3g2f_A           19 ELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFI   73 (336)
T ss_dssp             EEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEE
T ss_pred             eecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhhe
Confidence            4799999999999987 5789999999643   3455666655543  3  99999875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.36  E-value=0.0032  Score=62.14  Aligned_cols=57  Identities=30%  Similarity=0.394  Sum_probs=26.7

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      .++.|+|++|.+++ ++ .+..+++|+.|+|++|++++.  ..+..+++|+.|++++|.++
T Consensus       129 ~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          129 NLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             TCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             cccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            34445555554443 22 344444555555555554433  33444445555555555444

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=96.34  E-value=0.0013  Score=67.80  Aligned_cols=52  Identities=21%  Similarity=0.450  Sum_probs=40.4

Q ss_pred             EeeccCCceeeeeee------ecCCceEEEEeeccCCCCChHHHHHHHHHHhc-----CCCccccc
Q 008008          526 RILGKGGFGTVYHGY------LADGSEVAIKMLSASSSQGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~------l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      ..||+|+||.||+|.      ...+..||||+++..   ...+|..|++++.+     |+|||.++
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~  133 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFY  133 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEE
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhh
Confidence            479999999999994      456789999999643   45678888777766     79998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=96.33  E-value=0.0013  Score=67.89  Aligned_cols=70  Identities=27%  Similarity=0.319  Sum_probs=56.2

Q ss_pred             ceeEeecCCCCCceecchhhhcc-----cCCCeEeCCCCCCCCCccccccC----C-CccccccccCccCCCCCchHHHh
Q 008008          447 KIISLNLTSEGLTGKISPSLSNL-----KSLENLDLSNNSLTGSIPEFLSQ----L-PLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l-----~~L~~L~Ls~N~l~G~iP~~l~~----l-~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      .++.|+|++|.+++..+..+..+     ++|+.|+|++|.+++..+..++.    + ++|+.|+|++|++++..+..+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            68899999999987777777775     88999999999998877765544    3 78999999999998766655544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=96.32  E-value=0.0038  Score=66.71  Aligned_cols=59  Identities=22%  Similarity=0.358  Sum_probs=32.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      +.++.|++++|.+++.  +.+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++
T Consensus       331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            3455555555555542  345555556666666666555554  5555556666666665554

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=96.32  E-value=0.0015  Score=68.18  Aligned_cols=55  Identities=22%  Similarity=0.316  Sum_probs=35.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCC---CCChHHHHHHHHHH-hc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASS---SQGPKQFRTEVELI-DY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~---~~~~~ef~~Ei~~l-~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++.. ++..+|||.++...   ....+++.+|..++ ++  |||||+++
T Consensus        44 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~  105 (373)
T 2r5t_A           44 KVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLH  105 (373)
T ss_dssp             EEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEE
Confidence            48999999999999975 57889999996542   23345677888775 44  99999985

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=96.29  E-value=0.003  Score=63.28  Aligned_cols=55  Identities=16%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCC-ChHHH-HHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQ-GPKQF-RTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~-~~~ef-~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++... +|..||||.+...... ...++ .++..+++.  ||||++++
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~   90 (318)
T 2dyl_A           31 GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCF   90 (318)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             ceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEE
Confidence            47999999999999974 6889999999754322 22334 444455666  99999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=96.29  E-value=0.0048  Score=62.26  Aligned_cols=63  Identities=27%  Similarity=0.491  Sum_probs=49.8

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .+.++.|+|++|.+++ ++. +..+++|+.|+|++|.+++..|  +..+++|+.|++++|++++..|
T Consensus       150 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~  212 (308)
T 1h6u_A          150 LTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP  212 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG
T ss_pred             CCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc
Confidence            3578888999988875 443 8888899999999998885443  7788899999999999886544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=96.29  E-value=0.0039  Score=62.95  Aligned_cols=60  Identities=23%  Similarity=0.417  Sum_probs=50.6

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++++.|+|++|.+++. ++ +..+++|+.|+|++|++++..|  +..+++|+.|++++|.+++
T Consensus       172 l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            36789999999999864 33 8889999999999999986553  7889999999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=96.20  E-value=0.0013  Score=68.34  Aligned_cols=71  Identities=18%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             CceeEeecCCCCCc----eecchhhhcccCCCeEeCCCCCCCCC----ccccc--cCCCccccccccCccCCC----CCc
Q 008008          446 PKIISLNLTSEGLT----GKISPSLSNLKSLENLDLSNNSLTGS----IPEFL--SQLPLLRVLNLDGNKLSG----SVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~----G~ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l--~~l~~L~~L~ls~N~l~G----~iP  511 (581)
                      +.++.|+|++|.++    +.+|..+..+++|+.|+|++|.+++.    +|..+  +.+++|+.|+|++|.+++    .+|
T Consensus       216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~  295 (386)
T 2ca6_A          216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK  295 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred             CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence            57999999999997    67888999999999999999999876    67777  449999999999999998    588


Q ss_pred             hHHHh
Q 008008          512 TSLVA  516 (581)
Q Consensus       512 ~~l~~  516 (581)
                      ..+..
T Consensus       296 ~~l~~  300 (386)
T 2ca6_A          296 TVIDE  300 (386)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            77744

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.19  E-value=0.00093  Score=67.83  Aligned_cols=71  Identities=24%  Similarity=0.386  Sum_probs=54.6

Q ss_pred             CceeEeecCCC-CCce-ecchhhhcccCCCeEeCCCC-CCCCC-ccccccCCC-ccccccccCc--cCC-CCCchHHHh
Q 008008          446 PKIISLNLTSE-GLTG-KISPSLSNLKSLENLDLSNN-SLTGS-IPEFLSQLP-LLRVLNLDGN--KLS-GSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n-~l~G-~ip~~l~~l~~L~~L~Ls~N-~l~G~-iP~~l~~l~-~L~~L~ls~N--~l~-G~iP~~l~~  516 (581)
                      +.++.|+|++| .+++ .++..+..+++|+.|+|++| .+++. +|..+..++ +|+.|++++|  .++ +.+|..+..
T Consensus       142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~  220 (336)
T 2ast_B          142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  220 (336)
T ss_dssp             TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh
Confidence            57888999988 6776 36777888899999999998 88765 677788888 8999999988  555 445554433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.19  E-value=0.0048  Score=66.11  Aligned_cols=60  Identities=32%  Similarity=0.342  Sum_probs=52.4

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .+.++.|+|++|.+++ +|  ++.+++|+.|+|++|.+++. |  ++.+++|+.|++++|++++ +|
T Consensus        63 l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~  122 (457)
T 3bz5_A           63 LTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD  122 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC
T ss_pred             cCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec
Confidence            3679999999999987 44  88999999999999999974 4  8899999999999999987 55

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=96.18  E-value=0.002  Score=64.61  Aligned_cols=55  Identities=33%  Similarity=0.436  Sum_probs=40.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC------ChHHHHHHHHHHhc------CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ------GPKQFRTEVELIDY------YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~------~~~ef~~Ei~~l~~------H~NlV~l~  580 (581)
                      +.||+|+||.||++.. .++..||||.++.....      ....+.+|++++.+      |+|||+++
T Consensus        37 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           37 PLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             EEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             eEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            4799999999999985 56889999999654321      22345567666543      99999875

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=96.17  E-value=0.0025  Score=65.37  Aligned_cols=54  Identities=19%  Similarity=0.281  Sum_probs=42.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc-------CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY-------YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~-------H~NlV~l~  580 (581)
                      +.||+|+||.||+++. .++..||||+++.. ....+.+..|++++.+       |||||+++
T Consensus        41 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           41 RKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             EEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            4899999999999997 56789999999632 2234567778877765       89999875

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=96.15  E-value=0.0035  Score=64.08  Aligned_cols=55  Identities=18%  Similarity=0.341  Sum_probs=36.8

Q ss_pred             EeeccCCceeeeeeeec----CCceEEEEeeccCCCC-----------ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA----DGSEVAIKMLSASSSQ-----------GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~----~g~~VAVK~l~~~~~~-----------~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++...    .+..+|||........           ..+.+.+|+..+.+  |||||+++
T Consensus        43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~  114 (345)
T 2v62_A           43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFY  114 (345)
T ss_dssp             EEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEE
T ss_pred             eeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceee
Confidence            47999999999999975    5678999998654321           12347788888888  99999875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=96.13  E-value=0.0014  Score=73.61  Aligned_cols=54  Identities=26%  Similarity=0.398  Sum_probs=44.7

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||++.. .+|..||||+++... ....+.|.+|++++++  |||||+++
T Consensus        21 ~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~   78 (676)
T 3qa8_A           21 RLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAR   78 (676)
T ss_dssp             CCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEE
T ss_pred             EEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCcee
Confidence            789999999999996 468899999986542 2234679999999999  99999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=96.12  E-value=0.0045  Score=66.30  Aligned_cols=65  Identities=17%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             CceeEeecCCCCCceecchhhhccc-------CCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLK-------SLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~-------~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      +.++.|+|++|.+++..+..+.+|.       .|+.|++++|.+.|.+|  ++.+++|+.|++++|.+.|.+|.
T Consensus       233 ~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             TTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred             CCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence            4577777777777764433444443       45566666777777776  45677888888888887777775

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=96.10  E-value=0.0039  Score=61.81  Aligned_cols=53  Identities=26%  Similarity=0.500  Sum_probs=42.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||++.. .+|..||||.+...  ...+++.+|++++.+   |+|++.++
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~e~~~~~~l~~~~~i~~~~   72 (298)
T 1csn_A           16 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR--SDAPQLRDEYRTYKLLAGCTGIPNVY   72 (298)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECC--TTSCCHHHHHHHHHHTTTCTTCCCEE
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeccC--CccHHHHHHHHHHHHHhcCCCCCeEE
Confidence            4799999999999995 67889999998643  234568888888876   89988764

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=96.09  E-value=0.002  Score=65.15  Aligned_cols=55  Identities=31%  Similarity=0.509  Sum_probs=43.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC------ChHHHHHHHHHHhc----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ------GPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~------~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      ..||+|+||.||+|.. .++..||||.++.....      ..+.+.+|++++.+    |+||++++
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~  114 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL  114 (320)
T ss_dssp             EECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEE
Confidence            4899999999999985 57889999999654322      23567788988887    59999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=96.06  E-value=0.0017  Score=65.29  Aligned_cols=52  Identities=35%  Similarity=0.558  Sum_probs=42.7

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...+  .+|||.++...  ....+.|.+|++++++  |||||+++
T Consensus        40 ~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~   95 (319)
T 2y4i_B           40 LIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFM   95 (319)
T ss_dssp             BCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCC
T ss_pred             EeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence            78999999999998754  59999986432  2345678999999999  99999875

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=96.05  E-value=0.002  Score=66.55  Aligned_cols=70  Identities=29%  Similarity=0.312  Sum_probs=55.8

Q ss_pred             CceeEeecCCCCCceecchhhhcc-----cCCCeEeCCCCCCCCCccccccC-----CCccccccccCccCCCCCchHHH
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNL-----KSLENLDLSNNSLTGSIPEFLSQ-----LPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l-----~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      +.++.|+|++|.+++..+..+...     +.|+.|+|++|.+++..+..++.     .++|+.|+|++|+++...+..+.
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            579999999999987766655544     89999999999998776655443     36999999999999876555543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=95.98  E-value=0.0066  Score=64.87  Aligned_cols=60  Identities=32%  Similarity=0.382  Sum_probs=47.7

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|++|.+.+..+  +..+++|+.|+|++|++++..|  +..+++|+.|++++|++++.
T Consensus       287 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          287 TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc
Confidence            567888888888876433  7788888888888888887766  67888888888888888764

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=95.95  E-value=0.0052  Score=63.35  Aligned_cols=55  Identities=15%  Similarity=0.261  Sum_probs=38.0

Q ss_pred             EeeccCCceeeeeeeecC------CceEEEEeeccCCCCC-----------hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD------GSEVAIKMLSASSSQG-----------PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~------g~~VAVK~l~~~~~~~-----------~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|...+      +..||||.+.......           ...+..|+..+.+  |+|||+++
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~  114 (364)
T 3op5_A           41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKYW  114 (364)
T ss_dssp             EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCEE
T ss_pred             EEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeEE
Confidence            479999999999998754      4689999986542111           1223445556666  99999875

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=95.94  E-value=0.0047  Score=69.58  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=45.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccC---CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSAS---SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+++.. ++..||||+++..   .....+.+..|.++|.+   ||||+.|+
T Consensus       347 ~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~  408 (674)
T 3pfq_A          347 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLH  408 (674)
T ss_dssp             EESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEE
T ss_pred             EEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence            48999999999999964 5778999999642   23456788999999987   99999875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=95.89  E-value=0.0068  Score=59.97  Aligned_cols=52  Identities=35%  Similarity=0.478  Sum_probs=42.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l  579 (581)
                      ..||+|+||.||+++. .+|..||||.+....  ..+++.+|++++.+  |+|++..
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~   69 (296)
T 3uzp_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPT   69 (296)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCC
T ss_pred             EEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCc
Confidence            4799999999999995 678899999986543  33579999999998  8776654

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=95.88  E-value=0.0065  Score=60.69  Aligned_cols=52  Identities=15%  Similarity=0.288  Sum_probs=40.5

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCC------------------ChHHHHHHHHHHhc-CCCcccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQ------------------GPKQFRTEVELIDY-YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~------------------~~~ef~~Ei~~l~~-H~NlV~l  579 (581)
                      ..||+|+||.||++...+|..||||.++.....                  ....|.+|+++|++ + | +++
T Consensus        96 ~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~-~-~~v  166 (282)
T 1zar_A           96 KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ-G-LAV  166 (282)
T ss_dssp             EEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-T-SSS
T ss_pred             CEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-C-CCc
Confidence            479999999999999977899999999643211                  23568999999999 6 6 654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=95.86  E-value=0.0086  Score=66.81  Aligned_cols=64  Identities=30%  Similarity=0.343  Sum_probs=54.4

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARS  518 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~  518 (581)
                      +.++.|+|++|.+++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+.|+|++|+++ .||..+....
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~  284 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS  284 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence            578999999999986 66   46688999999999998 6777   5688999999999999 8998775543

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=95.85  E-value=0.0051  Score=64.81  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=38.5

Q ss_pred             EeeccCCceeeeeee-ecCCceEEEEeeccCCC---CChHHHHHHHHHHhc
Q 008008          526 RILGKGGFGTVYHGY-LADGSEVAIKMLSASSS---QGPKQFRTEVELIDY  572 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~---~~~~ef~~Ei~~l~~  572 (581)
                      ++||+|+||.||+|. ..+|+.||||+++....   ...+.|.+|+.++..
T Consensus        84 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~  134 (413)
T 3dzo_A           84 TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRL  134 (413)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGG
T ss_pred             cccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHh
Confidence            379999999999999 46789999999874332   236789999999988

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=95.84  E-value=0.001  Score=70.59  Aligned_cols=71  Identities=32%  Similarity=0.309  Sum_probs=44.2

Q ss_pred             CceeEeecCCCCCcee----cchhhhcccCCCeEeCCCCCCCCCccccccC-----CCccccccccCccCCC----CCch
Q 008008          446 PKIISLNLTSEGLTGK----ISPSLSNLKSLENLDLSNNSLTGSIPEFLSQ-----LPLLRVLNLDGNKLSG----SVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~----ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~-----l~~L~~L~ls~N~l~G----~iP~  512 (581)
                      ++++.|+|++|.+++.    ++..+..++.|+.|+|++|.+++..+..+++     .++|+.|++++|++++    .+|.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  392 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA  392 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence            3566777777776644    4555666677777777777766554443332     5577777777777764    4555


Q ss_pred             HHHh
Q 008008          513 SLVA  516 (581)
Q Consensus       513 ~l~~  516 (581)
                      .+..
T Consensus       393 ~l~~  396 (461)
T 1z7x_W          393 TLLA  396 (461)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.83  E-value=0.0021  Score=63.85  Aligned_cols=45  Identities=36%  Similarity=0.554  Sum_probs=40.0

Q ss_pred             hhhcccCCCeEeCCCCCCCC--CccccccCCCccccccccCccCCCC
Q 008008          465 SLSNLKSLENLDLSNNSLTG--SIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       465 ~l~~l~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      ...+++.|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.
T Consensus       165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            33578999999999999998  6788888999999999999999864

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=95.82  E-value=0.0056  Score=64.88  Aligned_cols=54  Identities=26%  Similarity=0.427  Sum_probs=41.2

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--------CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--------YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--------H~NlV~l~  580 (581)
                      ..||+|+||.||++... ++..||||+++.. ....+++.+|++++..        |+|||+++
T Consensus       103 ~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~  165 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHML  165 (429)
T ss_dssp             EEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEE
T ss_pred             EEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEE
Confidence            48999999999999864 5789999999643 1224567788877765        56888764

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=95.68  E-value=0.0088  Score=60.94  Aligned_cols=49  Identities=27%  Similarity=0.293  Sum_probs=36.4

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +||+|+||.||++... +|+.||||++...     .+..+|+..+.+   ||||++++
T Consensus        36 ~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~   88 (336)
T 3fhr_A           36 VLGLGVNGKVLECFHRRTGQKCALKLLYDS-----PKARQEVDHHWQASGGPHIVCIL   88 (336)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEESS-----HHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEecCc-----HHHHHHHHHHHHhcCCCChHHHH
Confidence            6899999999999975 6889999999542     233344433322   99999875

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=95.44  E-value=0.01  Score=58.55  Aligned_cols=52  Identities=35%  Similarity=0.478  Sum_probs=40.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l  579 (581)
                      ..||+|+||.||++.. .++..||||.+....  ..+++.+|++++.+  |+|++..
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~   69 (296)
T 4hgt_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPT   69 (296)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCC
T ss_pred             eeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCe
Confidence            4799999999999995 678899999875432  23468899999998  7777654

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=95.35  E-value=0.0097  Score=61.04  Aligned_cols=54  Identities=22%  Similarity=0.324  Sum_probs=42.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc-------------CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY-------------YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~-------------H~NlV~l~  580 (581)
                      ..||+|+||.||+++. .++..||||.++.. ....+.+.+|++++.+             |+||++++
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~   92 (373)
T 1q8y_A           25 RKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLL   92 (373)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCC
T ss_pred             EeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHH
Confidence            4799999999999995 57889999999642 1234678889888775             47898875

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=95.31  E-value=0.0081  Score=62.05  Aligned_cols=54  Identities=22%  Similarity=0.290  Sum_probs=41.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--C--------CCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--Y--------KNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H--------~NlV~l~  580 (581)
                      +.||+|+||.||+++. .++..||||+++.. ....+.+.+|+++|++  |        +|||+++
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~  107 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLL  107 (397)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEE
T ss_pred             EEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeee
Confidence            4799999999999985 56789999999643 2234678899998876  3        4587764

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=95.27  E-value=0.015  Score=63.78  Aligned_cols=51  Identities=14%  Similarity=0.144  Sum_probs=35.1

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCC--------hHHHHHHHHHHhc--CCCccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQG--------PKQFRTEVELIDY--YKNLSP  578 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~--------~~ef~~Ei~~l~~--H~NlV~  578 (581)
                      .||+|+||.||++.. .+..+++|+........        .+.|.+|+++|++  |||||+
T Consensus       343 ~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~  403 (540)
T 3en9_A          343 LIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPA  403 (540)
T ss_dssp             -----CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCC
T ss_pred             EEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCc
Confidence            689999999999965 46789999875432211        2458999999999  999994

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=95.15  E-value=0.017  Score=56.70  Aligned_cols=51  Identities=16%  Similarity=0.173  Sum_probs=38.4

Q ss_pred             EeeccCCceeeeeeee-cCCce--EEEEeeccCCCC--C----------------------hHHHHHHHHHHhc--CCCc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSE--VAIKMLSASSSQ--G----------------------PKQFRTEVELIDY--YKNL  576 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~--VAVK~l~~~~~~--~----------------------~~ef~~Ei~~l~~--H~Nl  576 (581)
                      ..||+|+||.||+|.. .+|..  ||||.++.....  .                      ...+.+|+++|.+  |+++
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i  132 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGV  132 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4799999999999998 78888  999987543111  0                      1258899999998  7764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=94.85  E-value=0.0066  Score=64.29  Aligned_cols=64  Identities=22%  Similarity=0.220  Sum_probs=55.1

Q ss_pred             CceeEeecCCCCCceecchhhhc-----ccCCCeEeCCCCCCCC----CccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSN-----LKSLENLDLSNNSLTG----SIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~-----l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|++|.+++..+..+..     ++.|+.|+|++|.+++    .+|..+..+++|+.|++++|++++.
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            57899999999998765555554     6799999999999987    7899999999999999999998743

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=94.84  E-value=0.01  Score=59.70  Aligned_cols=49  Identities=27%  Similarity=0.449  Sum_probs=38.6

Q ss_pred             EeeccCCceeeeeeee--cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCC
Q 008008          526 RILGKGGFGTVYHGYL--ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKN  575 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l--~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~N  575 (581)
                      ..||+|+||.||++..  .++..||||.++.. ....+.+.+|++++.+  |+|
T Consensus        20 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~   72 (339)
T 1z57_A           20 DTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTD   72 (339)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcC
Confidence            4799999999999985  46789999999643 2234678899999887  554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.59  E-value=0.018  Score=59.08  Aligned_cols=53  Identities=23%  Similarity=0.290  Sum_probs=28.6

Q ss_pred             ceeEeecCCCCCceecch-hhhcccCCCeEeCCCCCCCCCccc-cccCCCcccccc
Q 008008          447 KIISLNLTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLN  500 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~-~l~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~  500 (581)
                      ++..+++++++.-+.||. .|..+++|+.|||++|+++ .+|. .+..+..|+.++
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L~~L~~l~  232 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS  232 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTCCEEECTT
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccchHhhhcc
Confidence            456666664443345554 3566666666677666666 3433 344444444443

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=94.57  E-value=0.021  Score=59.14  Aligned_cols=49  Identities=31%  Similarity=0.466  Sum_probs=38.3

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc---CCC
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKN  575 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~N  575 (581)
                      ..||+|+||.||+|... ++..||||+++.. ....+++..|++++..   |+|
T Consensus        60 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~  112 (382)
T 2vx3_A           60 SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDT  112 (382)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSS
T ss_pred             EEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhccc
Confidence            47999999999999864 6789999999643 2234678888888876   665

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=94.42  E-value=0.027  Score=60.70  Aligned_cols=49  Identities=27%  Similarity=0.342  Sum_probs=38.3

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCcc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLS  577 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV  577 (581)
                      .||+|+||.||+++. .++..||||.++...  ..+++..|++++.+  |.+.+
T Consensus        14 ~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~il~~L~~~~~i   65 (483)
T 3sv0_A           14 KIGSGSFGEIYLGTNIQTNEEVAIKLENVKT--KHPQLLYESKIYRILQGGTGI   65 (483)
T ss_dssp             CCEECSSCEEEEEEETTTCCEEEEEEEETTC--SSCCHHHHHHHHHHTTTSTTC
T ss_pred             EEeeCCCEEEEEEEECCCCcEEEEEEecccc--ccHHHHHHHHHHHHhcCCCCC
Confidence            789999999999995 678899999886442  23468899999888  54443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=93.74  E-value=0.019  Score=59.77  Aligned_cols=62  Identities=24%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             ceeEeecCCCCCce----ecchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCC
Q 008008          447 KIISLNLTSEGLTG----KISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G----~ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++.|+|++|.++.    .++..+..++.|+.|+|++|.++..    ++..+..+++|+.|+|++|.++.
T Consensus       184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            46666666666642    2234455556666666666666532    33334445666666666666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=93.70  E-value=0.021  Score=59.42  Aligned_cols=64  Identities=23%  Similarity=0.276  Sum_probs=50.8

Q ss_pred             CceeEeecCCCCCce----ecchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTG----KISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G----~ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|++|.++.    .++..+..++.|+.|+|++|.++..    ++..+..+++|+.|+|++|+++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence            468899999999864    3455567788999999999998642    456677788999999999998753

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=93.69  E-value=0.032  Score=58.47  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=26.2

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeecc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSA  554 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~  554 (581)
                      ..||+|++|.||+|.-.+|+.||||.++.
T Consensus       101 ~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~  129 (397)
T 4gyi_A          101 SRIGVGKESDIMIVADEKGKQKVLKIHRL  129 (397)
T ss_dssp             EEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred             CEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence            48999999999999988999999998753

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.63  E-value=0.014  Score=63.78  Aligned_cols=64  Identities=20%  Similarity=0.287  Sum_probs=46.1

Q ss_pred             CceeEeecCCCCCce-ecchhhhcccCCCeEeCCCCCCCCC-ccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTG-KISPSLSNLKSLENLDLSNNSLTGS-IPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G-~ip~~l~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|+.|++++ .++..+..+++|+.|+|++|.+++. ++..+..+++|+.|++++|++++.
T Consensus       463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            457788888888765 3455556778888888888887654 444455678888888888887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.36  E-value=0.073  Score=46.53  Aligned_cols=57  Identities=28%  Similarity=0.391  Sum_probs=40.3

Q ss_pred             EeecCCCCCc-eecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          450 SLNLTSEGLT-GKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       450 ~l~Ls~n~l~-G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++.++++|+ ..+|..+  -.+|+.|+|++|+|+..-+..+..+++|+.|+|.+|.+.-
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            4556666665 3455432  2368899999999985444556778899999999998864

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=93.29  E-value=0.035  Score=56.15  Aligned_cols=49  Identities=29%  Similarity=0.418  Sum_probs=37.8

Q ss_pred             EeeccCCceeeeeeeec-CC-ceEEEEeeccCCCCChHHHHHHHHHHhc--CCC
Q 008008          526 RILGKGGFGTVYHGYLA-DG-SEVAIKMLSASSSQGPKQFRTEVELIDY--YKN  575 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g-~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~N  575 (581)
                      ..||+|+||.||++... ++ ..||||.++.. ....+.+.+|++++.+  |+|
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~   77 (355)
T 2eu9_A           25 GNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKD   77 (355)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcC
Confidence            47999999999999863 33 68999999643 1234678899999988  655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=92.68  E-value=0.035  Score=60.71  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=32.4

Q ss_pred             ceeEeecCCCCCcee----cchhhhcccCCCeEeCCCCCCC----CCccccccCCCccccccccCccCCC
Q 008008          447 KIISLNLTSEGLTGK----ISPSLSNLKSLENLDLSNNSLT----GSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~----ip~~l~~l~~L~~L~Ls~N~l~----G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++.|+|++|.+++.    ++..+..+++|+.|+|+.|.++    +.++..+..+++|+.|++++|.+.+
T Consensus       165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~  234 (592)
T 3ogk_B          165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE  234 (592)
T ss_dssp             TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred             CCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence            455556655555433    3333445555666666666554    2333444455556666666555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=92.66  E-value=0.05  Score=50.42  Aligned_cols=63  Identities=17%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             CceeEeecCCCCCce----ecchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccc--cCccCCC
Q 008008          446 PKIISLNLTSEGLTG----KISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNL--DGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G----~ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~l--s~N~l~G  508 (581)
                      +.++.|+|++|.+..    .+...+...+.|+.|+|++|.++..    +...+...++|+.|+|  ++|.++.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            357777888777752    2334455567778888888877643    4455666677888888  6677664

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=91.72  E-value=0.053  Score=50.26  Aligned_cols=64  Identities=20%  Similarity=0.329  Sum_probs=49.7

Q ss_pred             CceeEeecCCC-CCce----ecchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSE-GLTG----KISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n-~l~G----~ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|++| .+..    .+...+...+.|+.|+|++|.+...    +...+...++|+.|+|++|+++..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            46899999999 8863    2444566778999999999998642    345556678999999999998754

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=90.27  E-value=0.049  Score=56.44  Aligned_cols=63  Identities=22%  Similarity=0.339  Sum_probs=49.8

Q ss_pred             CceeEeecCCCCCceecchhhh---cccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLS---NLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~---~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      ++++.|+|.+|.+....+..+.   .+++|+.|+|+.|.+.+.    ++..+..+++|+.|+|++|.++.
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            6899999999998755444444   478899999999999764    55555667899999999998763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.58  E-value=0.47  Score=41.26  Aligned_cols=49  Identities=27%  Similarity=0.350  Sum_probs=37.4

Q ss_pred             CccCCCCCCC--------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCC
Q 008008          435 GLNCSYNGYK--------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLT  483 (581)
Q Consensus       435 Gv~C~~~~~~--------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~  483 (581)
                      -|.|+..+..        +..++.|+|++|.|+..-+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3667655421        457999999999998543446788999999999999775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=88.22  E-value=0.098  Score=57.02  Aligned_cols=62  Identities=19%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             CceeEeecCCCCCceecchhh-hcccCCCeEeCCCCCCCCCccc-cccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSL-SNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l-~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~ls~N~l~  507 (581)
                      +.++.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. .+..+++|+.|++++|.++
T Consensus       456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            467888888888866544444 5688888888888888554443 3445788888888888774

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=87.08  E-value=0.089  Score=57.37  Aligned_cols=66  Identities=18%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             CceeEeecCCCCCceecchhhhc-ccCCCeEeCCCCCCCCCccccc-cCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSN-LKSLENLDLSNNSLTGSIPEFL-SQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~-l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      ++++.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+++..+.
T Consensus       432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~  499 (594)
T 2p1m_B          432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL  499 (594)
T ss_dssp             TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred             CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence            4688999977 677665666766 8999999999999987655555 5689999999999998654433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=82.40  E-value=1.4  Score=44.14  Aligned_cols=55  Identities=24%  Similarity=0.313  Sum_probs=29.7

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcc-ccccCCCccc-cccccC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP-EFLSQLPLLR-VLNLDG  503 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~-~L~ls~  503 (581)
                      .++.|+|+.|+++.--+..|..|++|+.|+|++| +. .|+ ..+..|.+|+ .+++++
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT
T ss_pred             CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc
Confidence            4566666666655222224566666666666665 43 233 3345566666 665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	581
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-10
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-10
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-08
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-08
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-08
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-08
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	8e-08
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-07
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-07
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-07
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-07
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-07
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	3e-07
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-07
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-07
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-07
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	4e-07
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	5e-07
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-07
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	6e-07
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	8e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-07
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	9e-07
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	9e-07
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	9e-07
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	9e-07
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-06
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-06
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-06
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-06
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	3e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-06
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	3e-06
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	3e-06
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-06
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	4e-06
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-06
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	4e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-06
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	4e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-04
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-06
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	5e-06
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-06
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-06
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	7e-06
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	8e-05
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-06
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	1e-05
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-05
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-05
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-04
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-05
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-05
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-05
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-05
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-05
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-05
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	3e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	5e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.0 bits (167), Expect = 2e-13
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN 480
              +                       +  L+L +  + G +   L+ LK L +L++S N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP 511
           +L G IP+    L    V     NK     P
Sbjct: 279 NLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 476 DLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS 513
           DL NN + G++P+ L+QL  L  LN+  N L G +P  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 35/111 (31%)

Query: 401 DQDDVNAIMDIK--LSYDLG-KGWQ--GDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTS 455
           +  D  A++ IK  L        W    D C+    +W G+ C  +              
Sbjct: 4   NPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTD-------------- 46

Query: 456 EGLTGKISPSLSNLKSLENLDLSNNSLTG--SIPEFLSQLPLLRVLNLDGN 504
                      +    + NLDLS  +L     IP  L+ LP L  L + G 
Sbjct: 47  -----------TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 1e-10
 Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 11/143 (7%)

Query: 369 NFSLCKTSNSTLPPILNAIEIYILTDTLQEPTDQDDVNAIMDIKLSYDLGKGWQGDPCSP 428
           +  L     S L P+    ++  L     + ++   +  +  +          +      
Sbjct: 245 DLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 429 MYYSWDGLNCSYNGY-------KPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNS 481
              +   L   +N            K+  L   +  ++     SL+NL ++  L   +N 
Sbjct: 305 NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQ 362

Query: 482 LTGSIPEFLSQLPLLRVLNLDGN 504
           ++   P  L+ L  +  L L+  
Sbjct: 363 ISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.2 bits (142), Expect = 5e-10
 Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN 480
                 + +  + + L           +  L L    ++      +S+L  L+ L  +NN
Sbjct: 282 AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANN 339

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP 511
            ++      L+ L  +  L+   N++S   P
Sbjct: 340 KVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           + +   L    +T  +S   ++L  +  L      +  SI + +  L  L  +N   N+L
Sbjct: 23  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQL 78

Query: 507 SGSVP 511
           +   P
Sbjct: 79  TDITP 83

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLN 500
           ++ +L     G+   I   +  L +L  ++ SNN LT   P  L  L  L  + 
Sbjct: 45  QVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDIL 94

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 2e-10
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           L+  LG G FG V+ GY    ++VA+K L    S  P  F  E  L+
Sbjct: 17  LVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLM 62

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (142), Expect = 5e-10
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 450 SLNLTSEGLTGK-ISPSLSNLKSLENLDLSNNSLTG----SIPEFLSQLPLLRVLNLDGN 504
           SL++  E L+    +  L  L+  + + L +  LT      I   L   P L  LNL  N
Sbjct: 6   SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 505 KLSGSVPTSLVARSQNGSLLLRIL 528
           +L       ++   Q  S  ++ L
Sbjct: 66  ELGDVGVHCVLQGLQTPSCKIQKL 89

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (127), Expect = 3e-08
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 17/119 (14%)

Query: 415 YDLGKGWQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLEN 474
            D G                 L  +            +++       ++ +L    SL  
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADC----------DVSDSSC-SSLAATLLANHSLRE 401

Query: 475 LDLSNNSLTGSIPEFLSQ-----LPLLRVLNLDGNKLSGSVPTSLVARSQNGSLLLRIL 528
           LDLSNN L  +    L +       LL  L L     S  +   L A  ++    LR++
Sbjct: 402 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKP-SLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 4e-05
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 446 PKIISLNLTSEGLTGK----ISPSLSNLKSLENLDLSNNSLTGSIPEFLSQL-----PLL 496
            +   + L   GLT      IS +L    +L  L+L +N L       + Q        +
Sbjct: 27  QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 86

Query: 497 RVLNLDGN 504
           + L+L   
Sbjct: 87  QKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 5e-05
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 471 SLENLDLSNNSLTGS-IPEFLSQLPLLRVLNLDGNKLSGSVPTSLV-ARSQNGSL 523
            +++LD+    L+ +   E L  L   +V+ LD   L+ +    +  A   N +L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 57

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 6e-10
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI 570
            ++ +G G FG V+ GY  +  +VAIK +    +   + F  E E++
Sbjct: 9   FVQEIGSGQFGLVHLGYWLNKDKVAIKTIR-EGAMSEEDFIEEAEVM 54

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 9e-10
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           L   LG+G FG V+ G     + VAIK L    +  P+ F  E +++
Sbjct: 21  LEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVM 66

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI 570
            L+ LG G FG V +G      +VAIKM+    S    +F  E +++
Sbjct: 8   FLKELGTGQFGVVKYGKWRGQYDVAIKMIK-EGSMSEDEFIEEAKVM 53

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 432 SWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGS 485
               + CS  G +      PP    L+L +  +T        NLK+L  L L NN ++  
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 486 IPEFLSQLPLLRVLNLDGNKLSG 508
            P   + L  L  L L  N+L  
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKE 93

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 4e-04
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 437 NCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLL 496
              +NG     ++ L       +G  + +   +K L  + +++ ++T +IP+ L   P L
Sbjct: 117 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSL 173

Query: 497 RVLNLDGNKLSGSVPTSL 514
             L+LDGNK++     SL
Sbjct: 174 TELHLDGNKITKVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 7/47 (14%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 467 SNLKSLENLDLSNNSLTG------SIPEFLSQLPLLRVLNLDGNKLS 507
           ++ K ++ + L NN+++         P + ++      ++L  N + 
Sbjct: 239 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 6e-09
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN 480
               P +  Y +            PP +  LN+++  L  ++      L   E L  S N
Sbjct: 259 LSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFN 314

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLSG--SVPTSL 514
            L   +PE    L   + L+++ N L     +P S+
Sbjct: 315 HLA-EVPELPQNL---KQLHVEYNPLREFPDIPESV 346

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 27/94 (28%), Gaps = 5/94 (5%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN 480
           +  D                      ++          + +I        SLE L++SNN
Sbjct: 235 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN 294

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
            L   +P    +   L  L    N L+  VP   
Sbjct: 295 KLI-ELPALPPR---LERLIASFNHLA-EVPELP 323

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 5/45 (11%)

Query: 470 KSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           +    L+L+N  L+ S+PE       L  L    N L+  +P   
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELP 77

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSV 510
           L L + GL+  +     +L+SL     S NSLT  +PE    L  L V N +   LS   
Sbjct: 43  LELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 511 P 511
           P
Sbjct: 98  P 98

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (126), Expect = 4e-08
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 524 LLRILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELI 570
           +   LG G +G VY G        VA+K L   + +  ++F  E  ++
Sbjct: 21  MKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV-EEFLKEAAVM 67

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 6e-08
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
               +G+G  GTVY    +A G EVAI+ ++       +    E+ ++
Sbjct: 24  RFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVM 71

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           +   LG G FG V+     A G+  A K +        +  R E++ +
Sbjct: 30  IHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTM 77

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 52.4 bits (125), Expect = 7e-08
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           +L  LG G FG V+     A G     K ++          + E+ ++
Sbjct: 33  ILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIM 80

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           LL+ +GKG FG V  G    G++VA+K +   ++   + F  E  ++
Sbjct: 11  LLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVM 54

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP---KQFRTEVELI 570
           L  ILG GG   V+    L    +VA+K+L A  ++ P    +FR E +  
Sbjct: 11  LGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNA 61

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 1e-07
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE-----VAIKMLSASSSQG-PKQFRTEVELI 570
             +++G G FG VY G L   S      VAIK L A  ++     F  E  ++
Sbjct: 11  RQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIM 63

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           ++  LG G FG VY           A K++   S +  + +  E++++
Sbjct: 16  IIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDIL 63

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 2e-07
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 526 RILGKGGFGTVYHGYLADGS----EVAIKMLSASSSQG-PKQFRTEVELI 570
            ++G+G FG VYHG L D        A+K L+  +  G   QF TE  ++
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIM 82

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 2e-07
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQG-PKQFRTEVELI 570
            L  +G+G +G V   Y   +   VAIK +S    Q   ++   E++++
Sbjct: 12  NLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKIL 60

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKML--SASSSQGPKQFRTEVELI 570
            L  +G+G +G VY      G   A+K +         P     E+ ++
Sbjct: 6   GLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISIL 54

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYL------ADGSEVAIKMLSASSSQG-PKQFRTEVELI 570
            +R +G+G FG V+             + VA+KML   +S      F+ E  L+
Sbjct: 17  YVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALM 70

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKML--SASSSQGPKQFRTEVELI 570
           + + +G G FGTVY G      +VA+KML  +A + Q  + F+ EV ++
Sbjct: 12  VGQRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVL 58

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSS-QGPKQFRTEVELI 570
           L++ LG+G +G V           VA+K++    +   P+  + E+ + 
Sbjct: 9   LVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICIN 57

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP---KQFRTEVELI 570
            LR +G G FG VY    + +   VAIK +S S  Q     +    EV  +
Sbjct: 19  DLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFL 69

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 5e-07
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYL------ADGSEVAIKMLS-ASSSQGPKQFRTEVELI 570
           + R LG+G FG VY G           + VAIK ++ A+S +   +F  E  ++
Sbjct: 24  MSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVM 77

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.1 bits (116), Expect = 6e-07
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           L R +G G FG +Y G  +A G EVAIK+    +     Q   E ++ 
Sbjct: 11  LGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIY 56

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (116), Expect = 6e-07
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE----VAIKML-SASSSQGPKQFRTEVELI 570
           + +++G G FG V  G+L    +    VAIK L S  + +  + F +E  ++
Sbjct: 30  IEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIM 81

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYL----ADGSEVAIKMLS---ASSSQGPKQFRTEVELI 570
           LL  LG G FG V  G           VA+K L     S  +    F  EV  +
Sbjct: 12  LLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAM 65

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.1 bits (115), Expect = 8e-07
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 6/93 (6%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISP-SLSNLKSLENLDLSN 479
                      +      S+   +   +    L++ G    +   S      L+ L L  
Sbjct: 223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQY 282

Query: 480 NSLTGSIPEFL-----SQLPLLRVLNLDGNKLS 507
           N +       L      ++P L  L L+GN+ S
Sbjct: 283 NEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 451 LNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG----SIPEFLSQLPLLRVLNLDGNKL 506
             +T+E     +   L    S++ + LS N++       + E ++    L +        
Sbjct: 13  DAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 8e-07
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 524 LLRILGKGGFGTVYHGYLAD----GSEVAIKMLSASSSQG-PKQFRTEVELI 570
           L R +G+G FG V+ G           VAIK     +S    ++F  E   +
Sbjct: 11  LGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTM 62

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           L   +GKG FG V+ G    G EVA+K+    SS+  + +  E E+
Sbjct: 7   LQESIGKGRFGEVWRGKW-RGEEVAVKIF---SSREERSWFREAEI 48

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 9e-07
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQG-PKQFRTEVELI 570
            +  LG G  G V+       G  +A K++          Q   E++++
Sbjct: 10  KISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVL 58

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.5 bits (115), Expect = 9e-07
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQG-PKQFRTEVELI 570
              +LG G F  V           VAIK ++  + +G       E+ ++
Sbjct: 13  FRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.0 bits (116), Expect = 9e-07
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 4/57 (7%)

Query: 524 LLRILGKGGFGTVYHGYLAD-GSEVAIKMLS---ASSSQGPKQFRTEVELIDYYKNL 576
           + RI+G+GGFG VY    AD G   A+K L        QG      E  ++      
Sbjct: 8   VHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)

Query: 526 RILGKGGFGTVYHGYLAD---GSEVAIKMLSASSSQG--PKQFRTEVELI 570
           + LG G FGTV  GY         VA+K+L   ++      +   E  ++
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVM 62

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQG-PKQFRTEVELI 570
             + LG G FG V                VA+KML  S+     +   +E++++
Sbjct: 27  FGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVL 80

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-06
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 524 LLRILGKGGFGTVYHGY------LADGSEVAIKMLSASSSQGP-KQFRTEVELIDYYKN 575
           L + LG+G FG V           A    VA+KML   ++    +   +E++++ +  +
Sbjct: 17  LGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGH 75

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           + R +G+G FG ++ G  L +  +VAIK     S     Q R E    
Sbjct: 9   VGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDA--PQLRDEYRTY 54

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 528 LGKGGFGTVYHGYLA---DGSEVAIKMLSASSSQG-PKQFRTEVELI 570
           LG G FG+V  G         +VAIK+L   + +   ++   E +++
Sbjct: 17  LGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIM 63

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGYL-ADGSEVAIKMLS---ASSSQGPKQFRTEVELI 570
           + R LGKG FG VY          +A+K+L       +    Q R EVE+ 
Sbjct: 10  IGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQ 60

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 524 LLRILGKGGFGTVYHGYL--------ADGSEVAIKMLSASSSQ-GPKQFRTEVELI 570
           L + LG+G FG V                ++VA+KML + +++       +E+E++
Sbjct: 17  LGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSAS--SSQGPKQFRTEVELI 570
            L  +G G +G+V   +    G  VA+K LS    S    K+   E+ L+
Sbjct: 22  NLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLL 71

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKML--SASSSQGPKQFRTEVELI 570
            L+ +G G +G V        G++VAIK L     S    K+   E+ L+
Sbjct: 22  DLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLL 71

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKML--SASSSQGPKQFRTEVELI 570
            +  +G+G +G VY       G  VA+K +     +   P     E+ L+
Sbjct: 6   KVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLL 55

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQ---FRTEVELI 570
           +LR LG G FG V+      +G   A+K+L        KQ      E  ++
Sbjct: 8   ILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLML 58

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 3e-06
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGYLADGS---EVAIKMLS-ASSSQGPKQFRTEVELI 570
              ++G+G FG V    +       + AIK +   +S    + F  E+E++
Sbjct: 14  FQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVL 64

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASS--SQGPKQFRTEVELI 570
           +L  +G G +G        +DG  +  K L   S      +   +EV L+
Sbjct: 8   VLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLL 57

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE-----VAIKMLS-ASSSQGPKQFRTEVELI 570
            +++LG G FGTVY G      E     VAIK L  A+S +  K+   E  ++
Sbjct: 13  KIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVM 65

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 8/54 (14%), Positives = 20/54 (37%)

Query: 524 LLRILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDYYKNLS 577
           + +++G+G    V++ Y     E  +K      +   K          ++  L+
Sbjct: 4   IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLA 57

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 463 SPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           +   +N      LDL    +   I    + L     ++   N++
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI 53

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGYLADGSE------VAIKMLSASSSQG-PKQFRTEVELI 570
             ++LG G FG V +      S+      VA+KML   +     +   +E++++
Sbjct: 41  FGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMM 94

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 8/90 (8%)

Query: 433 WDGLNCSYNGYKP---PKIISLNLT----SEGLTGKISPSLSNLKSLENLDLSNNSLTG- 484
           W  L+ +     P    +++S  +           +      +   ++++DLSN+ +   
Sbjct: 2   WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 485 SIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
           ++   LSQ   L+ L+L+G +LS  +  +L
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTL 91

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 8e-04
 Identities = 10/94 (10%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN 480
                 S      +     +      + +SL+   + +  +    L  + +L+ L +   
Sbjct: 177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD-IIPETLLELGEIPTLKTLQVFGI 235

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
              G++      LP L++     +  +     ++
Sbjct: 236 VPDGTLQLLKEALPHLQINC---SHFTTIARPTI 266

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLS---ASSSQGPKQFRTEVELI 570
             +ILG+G F TV     LA   E AIK+L                E +++
Sbjct: 12  FGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVM 62

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 5e-06
 Identities = 8/41 (19%), Positives = 11/41 (26%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
                     LD+S   +       L  L  LR  +    K
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGYLAD-GSEVAIKMLSAS--SSQGPKQFRTEVELI 570
               +G+G F TVY G   +   EVA   L     +    ++F+ E E++
Sbjct: 13  FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEML 62

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 6e-06
 Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP---KQFRTEVELI 570
            L++LGKG FG V      A G   A+K+L               TE  ++
Sbjct: 9   YLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVL 59

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (109), Expect = 6e-06
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQ---FRTEVELI 570
            ++ LG G FG V        G+  A+K+L        KQ      E  ++
Sbjct: 45  RIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRIL 95

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 7e-06
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKML--SASSSQGPKQFRTEVELI 570
            L  +G+G +GTV+          VA+K +         P     E+ L+
Sbjct: 6   KLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLL 55

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 7e-06
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           L+R LG G F TV+    + + + VA+K++        +    E++L+
Sbjct: 17  LVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY-TEAAEDEIKLL 63

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.0 bits (105), Expect = 8e-06
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNL 501
             L++L +L  + L NN ++   P  L+    L ++ L
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 4e-04
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP 511
             L+NL  L  L   +N ++   P  L+ LP L  ++L  N++S   P
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 6e-04
 Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
             I +      +T  ++   ++L  +  L      +T +I E +  L  L  L L  N++
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELKDNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 5/40 (12%), Positives = 17/40 (42%), Gaps = 2/40 (5%)

Query: 468 NLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS 507
            L +   +    +++T ++    + L  +  L+  G  ++
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT 54

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 9e-06
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP------KQFRTEVELI 570
           +  +LG GGFG+VY G  ++D   VAIK +               +   EV L+
Sbjct: 8   VGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLL 61

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 9e-06
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKL 506
           + I  NL  + +T  ++   + L S++ +  +N+ +       +  LP +  L L+GNKL
Sbjct: 25  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80

Query: 507 SG 508
           + 
Sbjct: 81  TD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 8e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNL 501
             L+ L  L+NL LS N ++  +    + L  L VL L
Sbjct: 172 VPLAGLTKLQNLYLSKNHIS-DLRAL-AGLKNLDVLEL 207

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 9e-06
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLS--ASSSQGPKQFRTEVELI 570
            L+ +G G  G V   Y       VAIK LS    +    K+   E+ L+
Sbjct: 21  NLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLM 70

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQG--PKQFRTEVELI 570
            L  +G+G FG V+       G +VA+K +   + +   P     E++++
Sbjct: 14  KLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKIL 63

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQG-----PKQFRTEVELI 570
            L  LG+G F TVY          VAIK +             +    E++L+
Sbjct: 2   KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLL 54

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)

Query: 524 LLRILGKGGFGTVYHGYLA----DGSEVAIKMLS----ASSSQGPKQFRTEVELI 570
           LL++LG G +G V+          G   A+K+L        ++  +  RTE +++
Sbjct: 28  LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVL 82

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHG-YLADGSEVAIKMLS---ASSSQGPKQFRTEVELI 570
           L ++LGKG FG V+   +       AIK L           +    E  ++
Sbjct: 6   LHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVL 56

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 449 ISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK 505
           + +N     LT  + P L   K    L LS N L       L     L  LNLD  +
Sbjct: 13  LEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN 480
                   +  +             PK+  L+L +  LT   +  L+ L++L+ L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKL 506
           SL  +IP+      LL    L GN  
Sbjct: 183 SLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 465 SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSL 514
            +S + S   ++    +LT ++P  L       +L+L  N L      +L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATL 51

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVELI 570
           L+R LG+G +  V+    + +  +V +K+L        K+ + E++++
Sbjct: 39  LVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK---KKIKREIKIL 83

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 524 LLRILGKGGFGTVYHGYLAD-GSEVAIKMLSASSSQGPKQFRTEVELI 570
             +++G G FG VY   L D G  VAIK +     Q  +    E++++
Sbjct: 24  DTKVIGNGSFGVVYQAKLCDSGELVAIKKV----LQDKRFKNRELQIM 67

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           +   LG+G FG V+     +       K +    +      + E+ +
Sbjct: 9   IAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-QVLVKKEISI 54

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 524 LLRILGKGGFGTVYHGY--LADGSEVAIKMLSASSSQG--PKQFRTEVELI 570
            +  +G+G +G V+        G  VA+K +   + +   P     EV ++
Sbjct: 11  CVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVL 61

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 523 LLLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTEVEL 569
           +  ++LG G  G V   +      + A+KML         + R EVEL
Sbjct: 15  VTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVEL 57

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGP------KQFRTEVEL 569
               LG G F  V      + G + A K +    ++        +    EV +
Sbjct: 14  TGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSI 66

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 42.4 bits (99), Expect = 9e-05
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)

Query: 524 LLRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQGPKQFRTE 566
              ILG+G    V          E A+K++  +          +
Sbjct: 7   PKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQ 50

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 464 PSLSNLKSLENLDLSNNSLTG-SIPEFLSQLPLLRVLNLDGNKLSG--SVPTSLVARSQN 520
             ++NL  L+ L L NN L   +  + L   P L +LNL GN L     +   L     +
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 521 GSLLL 525
            S +L
Sbjct: 119 VSSIL 123

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 464 PSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVL 499
             L+NL +LE LD+S+N ++      L++L  L  L
Sbjct: 166 KPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 39.3 bits (90), Expect = 5e-04
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 447 KIISLNLTSEGLTGKISP------SLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLN 500
            +++       L G I P      +LS LK+ ++L LS N++   I   LS +  LR+L+
Sbjct: 19  SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILS 76

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 8e-04
 Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 421 WQGDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNN 480
                   ++ +      +        +  L L           +      L+    S++
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSS 258

Query: 481 SLTGSIPEFLSQLPLLRVLNLDGNKLSG 508
            +  S+P+ L+   L     L  N L G
Sbjct: 259 EVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)

Query: 444 KPPKIISLNLTSEGLTGK--ISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNL 501
             P+++SLNL++  L     +S  +    +L+ L+LS N L         +   L  L L
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 502 DGNKLSGSVPTSLVARSQNGSLL--LRIL 528
           DGN LS +        S        L  L
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRL 151

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 449 ISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTG--SIPEFLSQLPLLRVLNLDGNKL 506
           + LN  S      +     N+  L +L+LSNN L     +   + + P L++LNL GN+L
Sbjct: 45  VVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL 103

Query: 507 SGSVPTSLVARSQNGSLLLR 526
                   +   +   L L 
Sbjct: 104 KSERELDKIKGLKLEELWLD 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.4
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.43
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.43
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	98.41
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.27
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.26
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.24
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	98.2
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.2
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	98.2
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	98.18
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	98.17
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	98.15
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	98.15
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	98.14
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	98.13
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.13
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	98.11
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	98.06
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	98.05
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.05
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	98.05
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.04
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	98.04
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	98.03
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	98.02
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.02
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	98.02
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	97.98
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	97.96
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	97.96
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	97.96
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	97.94
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	97.93
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	97.92
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	97.9
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	97.85
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	97.85
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	97.85
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	97.84
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	97.82
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	97.82
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	97.8
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	97.78
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	97.75
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	97.73
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	97.72
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	97.72
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	97.72
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	97.71
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	97.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.66
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	97.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.64
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	97.59
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.59
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	97.59
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	97.57
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	97.57
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	97.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.55
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	97.54
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	97.33
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.27
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	97.24
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.23
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.21
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	97.21
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	97.2
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.03
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	96.89
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	96.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.57
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	96.57
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	96.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.5
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	96.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	96.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.47
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	95.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.13
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	95.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	94.95
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	94.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	94.44
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	92.82
d2o14a1	146	Hypothetical protein YxiM {Bacillus subtilis [TaxI	92.74
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	92.61
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	92.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	91.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	91.38
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	90.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	90.52
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	89.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	88.27
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	85.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	85.29
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	84.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	83.47

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.40  E-value=5.9e-14  Score=141.29  Aligned_cols=112  Identities=29%  Similarity=0.506  Sum_probs=95.7

Q ss_pred             CCcchhhhhhhhhhhcc---CCCCCC--CCCCCCCcccccCccCCCCCCCCCceeEeecCCCCCce--ecchhhhcccCC
Q 008008          400 TDQDDVNAIMDIKLSYD---LGKGWQ--GDPCSPMYYSWDGLNCSYNGYKPPKIISLNLTSEGLTG--KISPSLSNLKSL  472 (581)
Q Consensus       400 t~~~d~~aL~~~k~~~~---~~~~W~--g~pC~~~~~~W~Gv~C~~~~~~~~~l~~l~Ls~n~l~G--~ip~~l~~l~~L  472 (581)
                      |.++|.+||++||+.+.   ...+|.  +|+|.   +.|.||.|+..+ ...||+.|+|++++++|  .+|+++++|+.|
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~---~~w~gv~C~~~~-~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS-SCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC---CcCCCeEEeCCC-CcEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            67899999999998875   346795  47773   369999998643 23589999999999987  689999999999


Q ss_pred             CeEeCCC-CCCCCCccccccCCCccccccccCccCCCCCchHHH
Q 008008          473 ENLDLSN-NSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLV  515 (581)
Q Consensus       473 ~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~  515 (581)
                      ++|+|++ |+++|.+|..++++++|++|+|++|++.+..|..+.
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~  122 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS  122 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccc
Confidence            9999996 899999999999999999999999999987776543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.4e-08  Score=93.73  Aligned_cols=54  Identities=30%  Similarity=0.474  Sum_probs=48.0

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.+.++..||||+++.. ....++|.+|++++++  |||||+++
T Consensus        11 ~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~   66 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLY   66 (263)
T ss_dssp             EEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHHHhcCCCCccccc
Confidence            479999999999999998889999999754 3456889999999999  99999986

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=8.3e-08  Score=93.88  Aligned_cols=54  Identities=35%  Similarity=0.599  Sum_probs=47.8

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.+.++..||||+++.. ....++|.+|+++|++  |||||+++
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~   74 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLY   74 (272)
T ss_dssp             EEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecCCCcEEEEEEECCCCEEEEEEEccC-cCCHHHHHHHHHHHHhCCCCCEeEEE
Confidence            379999999999999998899999999654 3456789999999999  99999986

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=8.5e-08  Score=93.13  Aligned_cols=53  Identities=32%  Similarity=0.452  Sum_probs=47.6

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|+.+++..||||+++... ...++|.+|++++++  |||||+++
T Consensus        11 ~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~-~~~~~~~~Ev~~~~~l~HpnIv~~~   65 (258)
T d1k2pa_          11 ELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLY   65 (258)
T ss_dssp             CCCEETTEEEEEEEETTTEEEEEEEEESSS-SCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEecCCCeEEEEEEECCCCEEEEEEECcCc-CCHHHHHHHHHHHHhcCCCceeeEE
Confidence            689999999999999988899999997543 356899999999999  99999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.4e-07  Score=90.17  Aligned_cols=53  Identities=32%  Similarity=0.552  Sum_probs=47.3

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...++..||||+++.. .+..++|.+|++++++  |||||+++
T Consensus        24 ~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l~~l~h~nIv~~~   78 (285)
T d1fmka3          24 KLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLY   78 (285)
T ss_dssp             EEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHHHhcccCCEeEEE
Confidence            78999999999999998889999999644 4456889999999999  99999985

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.26  E-value=1.7e-07  Score=92.93  Aligned_cols=65  Identities=34%  Similarity=0.535  Sum_probs=53.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCcc-CCCC-Cc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNK-LSGS-VP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~-l~G~-iP  511 (581)
                      +.++.|+|++|+++|.+|..++++++|+.|+|++|+|+|.+|. ++++++|+.+++++|+ +.|. +|
T Consensus       244 ~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            4678888899999888888888888899999999999888885 5788888888888886 5653 55

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=3.7e-07  Score=89.84  Aligned_cols=54  Identities=28%  Similarity=0.413  Sum_probs=46.6

Q ss_pred             EeeccCCceeeeeeeec-CCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|... +|+.||||+++.. ....++|.+|+++|++  |||||+++
T Consensus        23 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~il~~l~HpnIv~~~   79 (287)
T d1opja_          23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLL   79 (287)
T ss_dssp             EETTTTTTSSEEEEEEGGGTEEEEEEECCTT-CSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEECCCCeEEEEEEECCc-cchHHHHHHHHHHHHhCCCCCEecCC
Confidence            37999999999999975 5789999999654 3456889999999999  99999986

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.1e-07  Score=89.48  Aligned_cols=54  Identities=24%  Similarity=0.403  Sum_probs=44.6

Q ss_pred             eeccCCceeeeeeeec---CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA---DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~---~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|...   ++..||||+++..... ..++|.+|+++|++  |||||+++
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~   75 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLI   75 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEe
Confidence            3899999999999863   3457999999755433 35789999999999  99999986

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=5.1e-07  Score=87.71  Aligned_cols=52  Identities=29%  Similarity=0.487  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.+. |+.||||+++..  ...++|.+|+++|++  |||||+++
T Consensus        13 ~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~--~~~~~~~~E~~~l~~l~HpnIv~~~   66 (262)
T d1byga_          13 QTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLL   66 (262)
T ss_dssp             EEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEEC-CeEEEEEEECcH--HHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            37999999999999985 688999999653  345789999999999  99999986

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.9e-07  Score=89.45  Aligned_cols=55  Identities=31%  Similarity=0.494  Sum_probs=44.5

Q ss_pred             EeeccCCceeeeeeeecCC-----ceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADG-----SEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g-----~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++||+|+||.||+|.+.+.     ..||||+++..... ..++|.+|+++|++  |||||+++
T Consensus        13 ~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~   75 (283)
T d1mqba_          13 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLE   75 (283)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeee
Confidence            3799999999999998542     37999999654332 24579999999999  99999986

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.9e-07  Score=89.07  Aligned_cols=55  Identities=22%  Similarity=0.384  Sum_probs=48.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|+. .+|..||||+++.......++|.+|+++|++  |||||+++
T Consensus        18 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~   75 (288)
T d2jfla1          18 GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLL   75 (288)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEE
Confidence            4799999999999996 5688999999977666667899999999999  99999985

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=4.4e-07  Score=90.41  Aligned_cols=54  Identities=33%  Similarity=0.478  Sum_probs=44.1

Q ss_pred             eeccCCceeeeeeeecCC----ceEEEEeeccC-CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADG----SEVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g----~~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +||+|+||+||+|.+.++    ..||||+++.. ..+..++|.+|+++|++  |||||+++
T Consensus        34 ~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~   94 (311)
T d1r0pa_          34 VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLL   94 (311)
T ss_dssp             EEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCC
T ss_pred             EEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEe
Confidence            789999999999998542    26899999743 23345789999999999  99999986

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=98.15  E-value=8.1e-07  Score=87.01  Aligned_cols=56  Identities=23%  Similarity=0.402  Sum_probs=47.9

Q ss_pred             EEeeccCCceeeeeeeecCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +..||+|+||+||+|+..+|..||||+++...  ....+.|.+|+++|++  |||||+++
T Consensus         7 ~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~   66 (286)
T d1ob3a_           7 LEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLY   66 (286)
T ss_dssp             EEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEE
T ss_pred             ccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeee
Confidence            34799999999999999889999999996532  3346789999999999  99999875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=8.9e-07  Score=86.60  Aligned_cols=54  Identities=26%  Similarity=0.398  Sum_probs=42.5

Q ss_pred             eeccCCceeeeeeeecC---CceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLAD---GSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~---g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|.+.+   ++.||||+++.....  ..++|.+|+++|++  |||||+++
T Consensus        14 ~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~   74 (277)
T d1xbba_          14 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMI   74 (277)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             CcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEE
Confidence            69999999999998753   357999999654322  24689999999999  99999986

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=8.2e-07  Score=87.65  Aligned_cols=55  Identities=25%  Similarity=0.365  Sum_probs=48.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .+|+.||||+++.......+.+.+|+++|++  |||||+++
T Consensus        26 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~   83 (293)
T d1yhwa1          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYL   83 (293)
T ss_dssp             EECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEe
Confidence            4799999999999985 5789999999976655567789999999999  99999985

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.13  E-value=9.6e-07  Score=87.82  Aligned_cols=56  Identities=32%  Similarity=0.386  Sum_probs=46.7

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+|+- .+|..||||+++....+.   .++|.+|+++|++  |||||+++
T Consensus        20 l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~   81 (309)
T d1u5ra_          20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYR   81 (309)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEE
Confidence            45799999999999985 578899999997554332   3579999999999  99999986

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=8.1e-07  Score=86.87  Aligned_cols=52  Identities=35%  Similarity=0.563  Sum_probs=44.2

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|++.+  .||||+++..  ..+..++|.+|+++|++  |||||+++
T Consensus        15 ~lG~G~fg~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~   70 (276)
T d1uwha_          15 RIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFM   70 (276)
T ss_dssp             EEEECSSCEEEEEESSS--EEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEeeCCCcEEEEEEECC--EEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeee
Confidence            68999999999998754  5999999744  33456889999999999  99999875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.2e-06  Score=87.31  Aligned_cols=56  Identities=32%  Similarity=0.558  Sum_probs=43.9

Q ss_pred             EEeeccCCceeeeeeeec-CCc----eEEEEeeccC-CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYLA-DGS----EVAIKMLSAS-SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l~-~g~----~VAVK~l~~~-~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+|... +|.    .||||+++.. ..+..++|.+|+++|++  |||||+++
T Consensus        14 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~   77 (317)
T d1xkka_          14 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLL   77 (317)
T ss_dssp             EEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            358999999999999863 443    6999998653 44567899999999999  99999986

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.5e-06  Score=84.59  Aligned_cols=55  Identities=24%  Similarity=0.309  Sum_probs=46.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++- .+|+.||||.++.....  ..+.|.+|+++|++  |||||+++
T Consensus        10 ~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~   69 (269)
T d2java1          10 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY   69 (269)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEE
Confidence            4799999999999985 57889999999754322  24679999999999  99999985

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.6e-06  Score=84.43  Aligned_cols=54  Identities=30%  Similarity=0.434  Sum_probs=45.0

Q ss_pred             eeccCCceeeeeeeec-CCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLA-DGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~-~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|... ++..||+|+++....  ...+.|.+|+++|++  |||||+++
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~   74 (270)
T d1t4ha_          16 EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY   74 (270)
T ss_dssp             EEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEE
Confidence            6899999999999964 678999999865422  234679999999999  99999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.05  E-value=1.6e-06  Score=79.75  Aligned_cols=83  Identities=24%  Similarity=0.355  Sum_probs=68.7

Q ss_pred             ccccCccCCCCCCC------CCceeEeecCCCCCceec-chhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          431 YSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKI-SPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       431 ~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~i-p~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      |.|..|.|+..+..      +..++.|+|++|.+++.+ +..|..+++|+.|+|++|++.+..+..+..++.|+.|+|++
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            56888999866532      457899999999998765 44678999999999999999988889999999999999999


Q ss_pred             ccCCCCCchHH
Q 008008          504 NKLSGSVPTSL  514 (581)
Q Consensus       504 N~l~G~iP~~l  514 (581)
                      |++. .||...
T Consensus        88 N~l~-~l~~~~   97 (192)
T d1w8aa_          88 NKIK-EISNKM   97 (192)
T ss_dssp             CCCC-EECSSS
T ss_pred             cccc-ccCHHH
Confidence            9998 455443

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.05  E-value=1.1e-06  Score=86.75  Aligned_cols=55  Identities=29%  Similarity=0.431  Sum_probs=45.6

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCCCC-ChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASSSQ-GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|+..      +++.||||+++....+ ..++|.+|+++|++  |||||+++
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~   82 (301)
T d1lufa_          19 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLL   82 (301)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccce
Confidence            47999999999999863      4578999999754333 34679999999999  99999875

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.1e-06  Score=84.50  Aligned_cols=55  Identities=20%  Similarity=0.259  Sum_probs=45.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC------CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS------QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~------~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++. .+|+.||||+++....      ...++|.+|+++|++  |||||+++
T Consensus        16 ~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~   79 (293)
T d1jksa_          16 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLH   79 (293)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999996 5789999999864321      125789999999999  99999985

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.1e-06  Score=87.02  Aligned_cols=55  Identities=29%  Similarity=0.452  Sum_probs=43.7

Q ss_pred             EeeccCCceeeeeeeec-CC---ceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA-DG---SEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~-~g---~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|... ++   ..||||++..... +..++|.+|+++|++  |||||+++
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~   93 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLE   93 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEE
Confidence            37999999999999974 23   3689999865432 335689999999999  99999986

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.1e-06  Score=84.56  Aligned_cols=56  Identities=23%  Similarity=0.382  Sum_probs=45.3

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCC--CCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASS--SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+|+- .+|+.||||+++...  .+..+++.+|+++|++  |||||+++
T Consensus         7 ~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~   67 (298)
T d1gz8a_           7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLL   67 (298)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             ccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEec
Confidence            34799999999999995 678999999996432  2346789999999999  99999985

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=8.7e-07  Score=88.01  Aligned_cols=55  Identities=27%  Similarity=0.465  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|.+.      +++.||||+++... .+....|.+|++++++  |||||+++
T Consensus        26 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~   89 (308)
T d1p4oa_          26 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL   89 (308)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeee
Confidence            47999999999999873      35789999997543 2334569999999999  99999986

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=3.6e-06  Score=74.85  Aligned_cols=85  Identities=26%  Similarity=0.312  Sum_probs=66.8

Q ss_pred             cccCccCCCCCCC--------CCceeEeecCCCC-CceecchhhhcccCCCeEeCCCCCCCCCccccccCCCcccccccc
Q 008008          432 SWDGLNCSYNGYK--------PPKIISLNLTSEG-LTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLD  502 (581)
Q Consensus       432 ~W~Gv~C~~~~~~--------~~~l~~l~Ls~n~-l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls  502 (581)
                      .+.+++|...+..        .++++.|+|++|+ ++..-+..|..++.|+.|+|++|+++..-|..+..+++|+.|+|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            4677888765431        3578899998765 775445578999999999999999986667778999999999999


Q ss_pred             CccCCCCCchHHHhh
Q 008008          503 GNKLSGSVPTSLVAR  517 (581)
Q Consensus       503 ~N~l~G~iP~~l~~~  517 (581)
                      +|+++ .+|..++..
T Consensus        89 ~N~l~-~l~~~~~~~  102 (156)
T d2ifga3          89 FNALE-SLSWKTVQG  102 (156)
T ss_dssp             SSCCS-CCCSTTTCS
T ss_pred             CCCCc-ccChhhhcc
Confidence            99998 777666543

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.7e-06  Score=84.31  Aligned_cols=55  Identities=22%  Similarity=0.407  Sum_probs=43.8

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCC-CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASS-SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++- .+|..||||+++... .+..++|.+|+++|++  |||||+++
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~   69 (271)
T d1nvra_          11 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFY   69 (271)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEe
Confidence            4799999999999996 568999999986543 3345679999999999  99999985

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.9e-06  Score=85.99  Aligned_cols=55  Identities=20%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC-hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG-PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~-~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|+. .+|..||||+++...... .+++.+|+++|++  |||||+++
T Consensus        12 ~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~   70 (322)
T d1s9ja_          12 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFY   70 (322)
T ss_dssp             EEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999995 578999999997543333 5689999999999  99999986

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=97.96  E-value=1.6e-06  Score=87.72  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=47.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++- .+|..||||++........+.+.+|+++|++  |||||+++
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~   89 (350)
T d1koaa2          32 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLH   89 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999986 5789999999975544445779999999999  99999985

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.96  E-value=3.8e-06  Score=81.74  Aligned_cols=55  Identities=27%  Similarity=0.317  Sum_probs=46.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCC---hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQG---PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~---~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++- .+|+.||||.++......   .+.|.+|+++|++  |||||+++
T Consensus        13 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~   73 (277)
T d1o6ya_          13 EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVY   73 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCccc
Confidence            4799999999999985 678999999997543332   3579999999999  99999875

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.5e-06  Score=84.64  Aligned_cols=55  Identities=33%  Similarity=0.500  Sum_probs=37.4

Q ss_pred             EeeccCCceeeeeeeec--CC--ceEEEEeeccCC---CCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA--DG--SEVAIKMLSASS---SQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~--~g--~~VAVK~l~~~~---~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|++.  ++  ..||||+++...   .+..++|.+|+++|++  |||||+++
T Consensus        14 ~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~   77 (273)
T d1u46a_          14 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLY   77 (273)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            36899999999999863  22  378999997542   2335789999999999  99999986

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=97.94  E-value=1.9e-06  Score=87.16  Aligned_cols=55  Identities=20%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .+|..||||+++.......+.+.+|+++|++  |||||+++
T Consensus        35 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~   92 (352)
T d1koba_          35 EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLH   92 (352)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999985 5789999999975543445678999999999  99999985

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4.8e-06  Score=81.25  Aligned_cols=56  Identities=25%  Similarity=0.326  Sum_probs=46.4

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+|+- .+|+.||||+++....  ...+.+.+|+++|++  |||||+++
T Consensus         7 i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~   67 (292)
T d1unla_           7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLH   67 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             eeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeec
Confidence            34799999999999995 5788999999864432  235789999999999  99999875

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=2.6e-06  Score=84.53  Aligned_cols=55  Identities=27%  Similarity=0.451  Sum_probs=44.8

Q ss_pred             EeeccCCceeeeeeee------cCCceEEEEeeccCCCC-ChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL------ADGSEVAIKMLSASSSQ-GPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l------~~g~~VAVK~l~~~~~~-~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+|++      .+++.||||+++..... ...+|.+|++++++   |||||+++
T Consensus        29 ~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~   93 (311)
T d1t46a_          29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLL   93 (311)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            3799999999999986      34568999999765433 34579999999987   99999986

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.6e-06  Score=81.80  Aligned_cols=55  Identities=25%  Similarity=0.365  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeeecC----CceEEEEeeccCCCCC-hHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD----GSEVAIKMLSASSSQG-PKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~----g~~VAVK~l~~~~~~~-~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+|....    +..||||+++...... .++|.+|+++|++  |||||+++
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~   74 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLI   74 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEE
Confidence            379999999999998642    3478999986543333 4679999999999  99999986

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.3e-06  Score=83.69  Aligned_cols=55  Identities=25%  Similarity=0.456  Sum_probs=42.3

Q ss_pred             EeeccCCceeeeeeeecC-Cc--eEEEEeeccC-CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLAD-GS--EVAIKMLSAS-SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~-g~--~VAVK~l~~~-~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+|...+ |.  .||||+++.. .....++|.+|+++|++   |||||+++
T Consensus        16 ~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~   77 (309)
T d1fvra_          16 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLL   77 (309)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEE
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEE
Confidence            379999999999999853 43  5889998643 34456789999999997   99999986

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.9e-06  Score=83.65  Aligned_cols=56  Identities=23%  Similarity=0.316  Sum_probs=43.6

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||+||+|.- .+|+.||||+++.... ...+++.+|+++|++  |||||+++
T Consensus        13 ~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~   72 (345)
T d1pmea_          13 LSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGIN   72 (345)
T ss_dssp             EEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCC
T ss_pred             EEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEE
Confidence            45899999999999984 6789999999975432 224678999999999  99999875

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4.5e-06  Score=81.98  Aligned_cols=55  Identities=27%  Similarity=0.343  Sum_probs=46.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||++.- .+|..||||.++..   .....+.|.+|+++|++  |||||+++
T Consensus        14 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~   74 (288)
T d1uu3a_          14 KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLY   74 (288)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEE
Confidence            4899999999999986 57889999998632   23456789999999998  99999985

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=3.9e-06  Score=83.21  Aligned_cols=55  Identities=20%  Similarity=0.247  Sum_probs=41.3

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC-CChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS-QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||+++- .+|+.||||++..... ...+.|.+|+++|++  |||||+++
T Consensus        15 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~   73 (307)
T d1a06a_          15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALD   73 (307)
T ss_dssp             EESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEE
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEE
Confidence            4799999999999986 4688999999965432 334678899999999  99999985

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.6e-06  Score=80.10  Aligned_cols=55  Identities=35%  Similarity=0.434  Sum_probs=46.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++. .+|+.||||.+...   .....+++.+|+++|++  |||||+++
T Consensus        12 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~   72 (263)
T d2j4za1          12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLY   72 (263)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEE
T ss_pred             EEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEE
Confidence            4799999999999997 46889999998632   23446789999999999  99999975

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8e-06  Score=80.86  Aligned_cols=55  Identities=22%  Similarity=0.367  Sum_probs=44.9

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC--CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS--SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~--~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||+||+|+. .+|+.||||++...  .....+++.+|+++|++  ||||++++
T Consensus        16 ~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~   75 (318)
T d3blha1          16 AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLI   75 (318)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceE
Confidence            4799999999999996 57899999998543  23346789999999999  99999875

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.3e-06  Score=82.21  Aligned_cols=56  Identities=27%  Similarity=0.390  Sum_probs=46.0

Q ss_pred             EEeeccCCceeeeeee-ecCCceEEEEeeccCCCC--ChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGY-LADGSEVAIKMLSASSSQ--GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~-l~~g~~VAVK~l~~~~~~--~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +..||+|+||.||+++ ..+|+.||||+++.....  ..+++.+|+++|++  |||||+++
T Consensus        23 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~   83 (348)
T d2gfsa1          23 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLL   83 (348)
T ss_dssp             EEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEE
Confidence            3479999999999998 467999999999754322  24578999999999  99999875

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=7.1e-06  Score=82.37  Aligned_cols=56  Identities=27%  Similarity=0.316  Sum_probs=39.9

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+|.- .+|+.||||+++....  ...+.+.+|+++|++  |||||+++
T Consensus        23 i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~   83 (346)
T d1cm8a_          23 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLL   83 (346)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCS
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEE
Confidence            34799999999999995 5689999999964322  224678999999999  99999985

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=7e-06  Score=81.62  Aligned_cols=55  Identities=22%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+++- .+|..||||+++..   .....+.|.+|+++|++  |||||+++
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~   70 (316)
T d1fota_          10 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMW   70 (316)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEE
T ss_pred             EEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhhee
Confidence            4799999999999996 56899999998632   23456789999999999  99999985

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.8e-06  Score=81.64  Aligned_cols=50  Identities=32%  Similarity=0.497  Sum_probs=38.4

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCCCChHHHHHHHH--HHhc--CCCccccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSSQGPKQFRTEVE--LIDY--YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~~~~~ef~~Ei~--~l~~--H~NlV~l~  580 (581)
                      .||+|+||.||+|++ +|..||||+++..   ..+++..|.+  .+.+  |||||+++
T Consensus        10 ~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~---~~~~~~~e~ei~~~~~~~HpnIv~~~   63 (303)
T d1vjya_          10 SIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFI   63 (303)
T ss_dssp             EEECCSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEE
T ss_pred             EEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhHHHHHHHHHHHhhCCCCcCcceE
Confidence            689999999999997 5789999999643   2344544544  4445  99999975

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=8.6e-06  Score=81.10  Aligned_cols=54  Identities=17%  Similarity=0.271  Sum_probs=44.7

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ..||+|+||.||++.- .+|..||||.++... .....+.+|+++|++  |||||+++
T Consensus        11 ~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~-~~~~~~~~Ei~il~~l~HpnIv~~~   67 (321)
T d1tkia_          11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLH   67 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEcCCc-ccHHHHHHHHHHHHhCCCCCCCeEE
Confidence            4799999999999986 468899999996532 224568899999999  99999985

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1.3e-05  Score=80.70  Aligned_cols=56  Identities=30%  Similarity=0.338  Sum_probs=43.9

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCC--CChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS--QGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~--~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||+||+|.- .+|..||||++.....  ...+.+.+|+++|++  |||||+++
T Consensus        22 ~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~   82 (355)
T d2b1pa1          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLL   82 (355)
T ss_dssp             EEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCS
T ss_pred             EEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEE
Confidence            35899999999999985 4689999999965432  223568999999999  99999975

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=1.2e-05  Score=81.06  Aligned_cols=56  Identities=21%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+++- .+|+.||||+++..   .....+.+.+|+++|++  |||||+++
T Consensus        46 ~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~  107 (350)
T d1rdqe_          46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLE  107 (350)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEE
T ss_pred             EEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecc
Confidence            45899999999999986 57899999998532   23446789999999999  99999985

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=1e-05  Score=81.25  Aligned_cols=56  Identities=29%  Similarity=0.339  Sum_probs=47.2

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc--CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++.||+|+||.||+++- .+|..||||+++..   .....+++.+|+++|++  |||||+++
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~   71 (337)
T d1o6la_          10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK   71 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            34899999999999995 57899999998642   23456789999999999  99999986

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=97.71  E-value=1.3e-05  Score=79.68  Aligned_cols=53  Identities=21%  Similarity=0.458  Sum_probs=45.0

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ++.||+|+||.||+|+- .+|+.||||+++..   ..+++.+|+++|.+   |||||+++
T Consensus        40 ~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~   96 (328)
T d3bqca1          40 VRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLA   96 (328)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEE
Confidence            35799999999999985 57889999999643   35789999999987   99999875

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.3e-05  Score=79.77  Aligned_cols=55  Identities=25%  Similarity=0.427  Sum_probs=42.0

Q ss_pred             EeeccCCceeeeeeeecCC------ceEEEEeeccCC-CCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLADG------SEVAIKMLSASS-SQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~~g------~~VAVK~l~~~~-~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+|+....      ..||||++.... ....++|.+|+++|++   |||||+++
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~  107 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLL  107 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEE
Confidence            4799999999999986431      369999986543 3445789999999986   99999986

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=3e-05  Score=65.91  Aligned_cols=60  Identities=32%  Similarity=0.471  Sum_probs=47.1

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      ..++.|+|++|.++ .+|+.+..+++|+.|++++|.+++ +| .++.+++|+.|++++|+++.
T Consensus        20 ~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3          20 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS
T ss_pred             CCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCC
Confidence            46788888888887 577778888888888888888874 45 47788888888888888763

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.9e-05  Score=79.31  Aligned_cols=51  Identities=27%  Similarity=0.445  Sum_probs=42.1

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      ++||+|+||+||+++. .+|+.||||+++....    .+.+|+++|++  |+|||+++
T Consensus        26 k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~----~~~~Ei~il~~l~h~niv~~~   79 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLR   79 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSS----SCCHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeeCcCeEEEEEEECCCCCEEEEEEECccch----HHHHHHHHHHhcCCCCCCcEE
Confidence            4799999999999996 4689999999965432    23479999998  99999875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.64  E-value=1.4e-05  Score=73.00  Aligned_cols=69  Identities=22%  Similarity=0.312  Sum_probs=54.6

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchH
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTS  513 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~  513 (581)
                      ..+++.|+|++|.++...|..|..++.|+.|+|++|++++..|..+..+++|++|+|++|.+.+..+..
T Consensus        77 ~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~  145 (192)
T d1w8aa_          77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred             ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH
Confidence            356888888888888666667888888888888888888766677788888888888888887665443

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.59  E-value=2.3e-05  Score=76.30  Aligned_cols=55  Identities=20%  Similarity=0.247  Sum_probs=44.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCC--C-------hHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQ--G-------PKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~--~-------~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      ..||+|+||.||+++- .+|+.+|||+++.....  .       .+.+.+|+++|++   |||||+++
T Consensus         9 ~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~   76 (277)
T d1phka_           9 EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLK   76 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             eEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence            4799999999999985 57899999998654221  1       1358899999998   99999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.59  E-value=3.5e-05  Score=75.29  Aligned_cols=83  Identities=29%  Similarity=0.394  Sum_probs=68.6

Q ss_pred             cccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          430 YYSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       430 ~~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      .|.|.+|.|+..+..      ++.++.|+|++|+++.-.+..|.+++.|+.|++++|.+....|..+..++.|+.|++++
T Consensus         9 ~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_           9 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             EecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            468999999875432      45689999999999853344799999999999999999977788899999999999999


Q ss_pred             ccCCCCCchH
Q 008008          504 NKLSGSVPTS  513 (581)
Q Consensus       504 N~l~G~iP~~  513 (581)
                      |++. .+|..
T Consensus        89 n~l~-~l~~~   97 (305)
T d1xkua_          89 NQLK-ELPEK   97 (305)
T ss_dssp             SCCS-BCCSS
T ss_pred             CccC-cCccc
Confidence            9987 45543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=1.7e-05  Score=78.90  Aligned_cols=55  Identities=24%  Similarity=0.360  Sum_probs=44.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+|+- .+|+.||||+++..   .....+.+..|+.++.+   |||||+++
T Consensus         8 ~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~   69 (320)
T d1xjda_           8 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMF   69 (320)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             eEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            4799999999999986 46889999999643   24456778888887764   99999985

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.6e-05  Score=78.19  Aligned_cols=55  Identities=27%  Similarity=0.437  Sum_probs=38.8

Q ss_pred             EeeccCCceeeeeeeec--------CCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA--------DGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~--------~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+|+..        ++..||||+++.... ....+|.+|+..+.+   |||||+++
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~   85 (299)
T d1fgka_          19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLL   85 (299)
T ss_dssp             EECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecc
Confidence            47999999999999853        235799999976443 335789999988877   99999985

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=9.7e-06  Score=78.69  Aligned_cols=55  Identities=31%  Similarity=0.507  Sum_probs=43.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCC------CChHHHHHHHHHHhc----CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSS------QGPKQFRTEVELIDY----YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~------~~~~ef~~Ei~~l~~----H~NlV~l~  580 (581)
                      +.||+|+||.||+|+- .+|+.||||+++....      ...+++.+|+++|++    |||||+++
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~   75 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLL   75 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEE
Confidence            4799999999999995 5789999999864321      123457889999876    89999875

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=2.4e-05  Score=78.22  Aligned_cols=49  Identities=29%  Similarity=0.278  Sum_probs=41.6

Q ss_pred             eeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          527 ILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +||+|+||.||++.- .++..||||.++.     .+.+.+|++++.+   |||||+++
T Consensus        19 ~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~   71 (335)
T d2ozaa1          19 VLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIV   71 (335)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEE
T ss_pred             EeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEE
Confidence            689999999999985 6789999999953     3578899988765   99999975

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.55  E-value=4e-05  Score=65.09  Aligned_cols=58  Identities=36%  Similarity=0.497  Sum_probs=51.7

Q ss_pred             EeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          450 SLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       450 ~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      .|+|++|+++ .++ .+..++.|++|++++|.++ .+|+.++.+++|+.|++++|+++. +|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~   59 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD   59 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC
Confidence            5899999998 454 5899999999999999998 689899999999999999999984 55

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.8e-05  Score=76.27  Aligned_cols=56  Identities=21%  Similarity=0.358  Sum_probs=41.2

Q ss_pred             EEeeccCCceeeeeeee-cC-CceEEEEeeccCC--CCChHHHHHHHHHHhc-----CCCccccc
Q 008008          525 LRILGKGGFGTVYHGYL-AD-GSEVAIKMLSASS--SQGPKQFRTEVELIDY-----YKNLSPTY  580 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~-g~~VAVK~l~~~~--~~~~~ef~~Ei~~l~~-----H~NlV~l~  580 (581)
                      ++.||+|+||.||+++- .+ ++.||||+++...  .....++.+|+++|++     |||||+++
T Consensus        12 ~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~   76 (305)
T d1blxa_          12 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLF   76 (305)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEE
T ss_pred             EEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceee
Confidence            45799999999999985 33 5679999986432  2234466777776553     99999875

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=5e-05  Score=74.29  Aligned_cols=55  Identities=24%  Similarity=0.362  Sum_probs=40.7

Q ss_pred             EeeccCCceeeeeeeec------CCceEEEEeeccCCC-CChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYLA------DGSEVAIKMLSASSS-QGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l~------~g~~VAVK~l~~~~~-~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+|...      +++.||||+++.... ...++|.+|++.+.+   |+|||.++
T Consensus        19 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~   83 (299)
T d1ywna1          19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   83 (299)
T ss_dssp             EEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             eEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence            47999999999999863      246899999975433 235678899888877   88998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00013  Score=69.92  Aligned_cols=63  Identities=33%  Similarity=0.373  Sum_probs=52.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.+..+++++|++++..+..+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+...
T Consensus       148 ~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            56788888888888766667888888888888888888 7888888888888888888887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00016  Score=63.69  Aligned_cols=63  Identities=27%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++++.|+|++|+++..-|..|..+++|+.|+|++|+++ .+|..+.....|+.|+|++|.|..
T Consensus        55 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccC
Confidence            367999999999999766777999999999999999998 777776666689999999999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=4.7e-05  Score=75.59  Aligned_cols=55  Identities=24%  Similarity=0.386  Sum_probs=43.8

Q ss_pred             EeeccCCceeeeeeee----cCCceEEEEeeccC----CCCChHHHHHHHHHHhc--C-CCccccc
Q 008008          526 RILGKGGFGTVYHGYL----ADGSEVAIKMLSAS----SSQGPKQFRTEVELIDY--Y-KNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l----~~g~~VAVK~l~~~----~~~~~~ef~~Ei~~l~~--H-~NlV~l~  580 (581)
                      +.||+|+||.||+++-    .+|+.||||.++..    .....+.+.+|+++|++  | ||||+++
T Consensus        30 ~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~   95 (322)
T d1vzoa_          30 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLH   95 (322)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEE
T ss_pred             EEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEee
Confidence            4899999999999974    24789999998642    12345778999999999  6 8999875

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00015  Score=69.38  Aligned_cols=73  Identities=27%  Similarity=0.308  Sum_probs=63.6

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHhhcc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVARSQ  519 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~~~~  519 (581)
                      ..+..|++++|.++...+..+..++.|+.|++++|++++..|..+..+++|+.|+|++|+|+ .||.+++....
T Consensus       124 ~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~  196 (266)
T d1p9ag_         124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL  196 (266)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC
T ss_pred             cccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCC
Confidence            56889999999998655666788999999999999999888888899999999999999999 89988765443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00015  Score=69.91  Aligned_cols=63  Identities=24%  Similarity=0.222  Sum_probs=30.5

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      .++.++++.|.+++..|..|..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.
T Consensus       178 ~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             ccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            344444455544444444444444555555555555444444444444555555555544443

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.21  E-value=9.8e-05  Score=72.07  Aligned_cols=53  Identities=34%  Similarity=0.464  Sum_probs=42.2

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      +.||+|+||.||+|+. .+|+.||||.+....  ..+++..|++++++  |+|+|.++
T Consensus        13 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~E~~i~~~l~~~~~i~~~   68 (299)
T d1ckia_          13 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTI   68 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEESCT--TSCCHHHHHHHHHHSTTSTTCCCE
T ss_pred             EEEeeCCCcEEEEEEECCCCCEEEEEEEchhc--cCHHHHHHHHHHHHccCCCcccEE
Confidence            4799999999999985 568899999986543  23568899999988  77766543

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.20  E-value=8e-05  Score=75.23  Aligned_cols=55  Identities=31%  Similarity=0.434  Sum_probs=41.4

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccC---CCCChHHHHHH---HHHHhc--CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSAS---SSQGPKQFRTE---VELIDY--YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~---~~~~~~ef~~E---i~~l~~--H~NlV~l~  580 (581)
                      ++||+|+||.||+++- .+|..||||++...   ..+....+.+|   +++++.  |||||+++
T Consensus        10 ~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~   73 (364)
T d1omwa3          10 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMS   73 (364)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEE
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            4899999999999996 46899999998532   12334445444   677776  99999875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00031  Score=62.22  Aligned_cols=59  Identities=22%  Similarity=0.305  Sum_probs=29.4

Q ss_pred             ceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          447 KIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      .++.|+|++|.++ .++ .+..+++|+.|++++|+++...+..+..+++|+.|++++|+++
T Consensus        42 ~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          42 QFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             CCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             cCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecccccc
Confidence            4555555555554 232 3455555555555555555222222334555555555555554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0003  Score=67.79  Aligned_cols=71  Identities=24%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      ..++.|+|++|++++..+..+..+++|+.+++++|++++..|..+..+++|+.|++++|++.+..|..+..
T Consensus       153 ~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~  223 (284)
T d1ozna_         153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP  223 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred             cchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccccccc
Confidence            56889999999999877788999999999999999999988999999999999999999999765555533

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.00  E-value=0.00037  Score=67.59  Aligned_cols=65  Identities=26%  Similarity=0.407  Sum_probs=48.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCch
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVPT  512 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP~  512 (581)
                      ..+..|++++|.+.+..+..+..+++|+.|+|++|.++ .+|..+..+++|++|+|++|+++ .|+.
T Consensus       195 ~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~  259 (305)
T d1xkua_         195 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS  259 (305)
T ss_dssp             TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             ccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccCh
Confidence            34667777777777666667777788888888888776 66777777888888888888776 4443

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.89  E-value=0.00029  Score=68.55  Aligned_cols=53  Identities=28%  Similarity=0.513  Sum_probs=39.0

Q ss_pred             EeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc---CCCccccc
Q 008008          526 RILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY---YKNLSPTY  580 (581)
Q Consensus       526 ~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~---H~NlV~l~  580 (581)
                      +.||+|+||.||+|+. .+|+.||||.++...  ..+++.+|++.+++   |+|++.++
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~   67 (293)
T d1csna_          11 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVY   67 (293)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEE
Confidence            4799999999999995 568899999885432  22345666666655   68887664

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00042  Score=69.06  Aligned_cols=47  Identities=26%  Similarity=0.394  Sum_probs=37.3

Q ss_pred             EEeeccCCceeeeeeee-cCCceEEEEeeccCCCCChHHHHHHHHHHhc
Q 008008          525 LRILGKGGFGTVYHGYL-ADGSEVAIKMLSASSSQGPKQFRTEVELIDY  572 (581)
Q Consensus       525 l~~iG~g~fg~Vykg~l-~~g~~VAVK~l~~~~~~~~~ef~~Ei~~l~~  572 (581)
                      +..||+|+||.||+|+- .+|+.||||+++... ...+.+.+|+++|.+
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~   65 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQR   65 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHH
Confidence            35899999999999985 678999999996432 124678889988876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.57  E-value=0.001  Score=65.94  Aligned_cols=62  Identities=24%  Similarity=0.355  Sum_probs=51.6

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.+..|+|++|.+++. + .+..+++|+.|+|++|++++ +| .+..+++|+.|++++|++++-.|
T Consensus       307 ~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~  368 (384)
T d2omza2         307 KNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP  368 (384)
T ss_dssp             TTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG
T ss_pred             cccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh
Confidence            5678899999999864 3 48889999999999999984 55 58889999999999999986554

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.57  E-value=0.0012  Score=59.64  Aligned_cols=53  Identities=17%  Similarity=0.302  Sum_probs=38.0

Q ss_pred             eeccCCceeeeeeeecCCceEEEEeeccCCC-----C-----C--------hHHHHHHHHHHhc--CCCcccc
Q 008008          527 ILGKGGFGTVYHGYLADGSEVAIKMLSASSS-----Q-----G--------PKQFRTEVELIDY--YKNLSPT  579 (581)
Q Consensus       527 ~iG~g~fg~Vykg~l~~g~~VAVK~l~~~~~-----~-----~--------~~ef~~Ei~~l~~--H~NlV~l  579 (581)
                      .||+|+||.||+|...+|..||||.++....     .     .        ......|+..|.+  |.+++..
T Consensus         7 ~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~   79 (191)
T d1zara2           7 LMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKV   79 (191)
T ss_dssp             EEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCE
T ss_pred             EeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceE
Confidence            7899999999999988999999998753210     0     0        1234567777777  8777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.51  E-value=0.001  Score=66.03  Aligned_cols=56  Identities=25%  Similarity=0.413  Sum_probs=49.6

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGN  504 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N  504 (581)
                      .+.++.|+|++|.+++ ++ .+..+++|+.|+|++|++++..|  +.++++|+.|+|++|
T Consensus       328 l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         328 LTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            3679999999999985 44 69999999999999999997655  889999999999988

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0013  Score=58.00  Aligned_cols=62  Identities=23%  Similarity=0.196  Sum_probs=51.8

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcc--ccccCCCccccccccCccCC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP--EFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~ls~N~l~  507 (581)
                      .++++.|+|++|.++...+..+..++.|+.|+|++|+++. ++  ..+..+++|+.|++++|.++
T Consensus        62 l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CcchhhhhcccccccCCCccccccccccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence            3679999999999985444446789999999999999974 44  46788999999999999886

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=96.42  E-value=0.034  Score=47.72  Aligned_cols=80  Identities=11%  Similarity=0.143  Sum_probs=58.6

Q ss_pred             ceeEEecCCCCCcccEEEEEEeecCCCCCCCCCceEEEEEcceeeEEEEecCCCccEEEEEEEEccCCcEEEEEeeCC-C
Q 008008          125 RNCYSLRPPEGKAKTYLTRASFMYGDYDDEDKLPEFDLYIGVNRWDSIKFDNASHVVIKEIIHSALMDEINVCLLNTG-K  203 (581)
Q Consensus       125 ~~~Y~~~v~~~~~~~ylVRl~F~~~~yd~~~~~~~F~v~i~~~~~~~v~~~~~~~~~~~E~i~~~~~~~l~v~l~~~~-~  203 (581)
                      ...|+++++.|   .|.|+++|-..        ...++.+.+-. ......  ....-+.|.|.+.++.|.|.|+... .
T Consensus        64 ~~~f~v~vPnG---~Y~Vtv~~Gd~--------~~~~~~~eg~~-~~~~~~--g~~~~~~~~V~VtDG~L~l~ft~~~~G  129 (146)
T d2o14a1          64 NNTFNVDLPNG---LYEVKVTLGNT--------ARASVAAEGVF-QVINMT--GDGAEDTFQIPVTDGQLNLLVTEGKAG  129 (146)
T ss_dssp             SCCEEEECCSE---EEEEEEEESSC--------SEEEEEETTEE-EEEEEE--STTCEEEEEEEECSSEEEEEEEESSTT
T ss_pred             CceEEEECCCC---eEEEEEEEecC--------CCccEEEeeEE-eccccC--CccEEEEEEEEEECCeEEEEEecCCCC
Confidence            35899999866   99999998741        24466666521 122222  3445678899999999999998655 5


Q ss_pred             CCceeeeeeeeecCc
Q 008008          204 GTPFISALELRHFHN  218 (581)
Q Consensus       204 ~~pfIn~iEi~~l~~  218 (581)
                      ..|-||+|||.++++
T Consensus       130 ~~~~in~l~I~~~~d  144 (146)
T d2o14a1         130 TAFTLSALKIKKLSD  144 (146)
T ss_dssp             SCCEEEEEEEEEEES
T ss_pred             CccEEEEEEEEeccc
Confidence            689999999998875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=96.09  E-value=0.0029  Score=58.42  Aligned_cols=61  Identities=26%  Similarity=0.436  Sum_probs=49.0

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      ++++.|++++|.+...  ..+..+++|+.|+|++|++++ +|. ++.+++|+.|+|++|+++. +|
T Consensus       151 ~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~  211 (227)
T d1h6ua2         151 TNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VS  211 (227)
T ss_dssp             TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CG
T ss_pred             cccccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-Cc
Confidence            5688899998888653  347889999999999999985 544 7888999999999999884 44

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0024  Score=56.05  Aligned_cols=65  Identities=34%  Similarity=0.384  Sum_probs=48.9

Q ss_pred             CceeEeecCCCCCce--ecchhhhcccCCCeEeCCCCCCCCCccc-cccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTG--KISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G--~ip~~l~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.++.|+|++|+++.  .++..+..+++|+.|+|++|.++. ++. .......|+.|++++|.+.....
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcc
Confidence            568889999999874  244567788999999999999884 433 23344578999999999886654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.47  E-value=0.008  Score=54.21  Aligned_cols=60  Identities=27%  Similarity=0.391  Sum_probs=48.1

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGS  509 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~  509 (581)
                      +.++.|+|++|.+++. + .+..+++|+.|++++|.+. .+| .+..++.|+.|++++|.+...
T Consensus        62 ~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~~  121 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITDI  121 (199)
T ss_dssp             TTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC
T ss_pred             CCcCcCccccccccCc-c-cccCCcccccccccccccc-ccc-ccccccccccccccccccccc
Confidence            5788999999998863 3 3888999999999999886 344 377889999999998887653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.26  E-value=0.011  Score=53.21  Aligned_cols=61  Identities=33%  Similarity=0.525  Sum_probs=50.9

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +++..|++++|.+.. + +.+..+++|+.|++++|++++ ++ .++.+++|+.|++++|+++. ||
T Consensus       128 ~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         128 TNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             TTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             hhhHHhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc
Confidence            578899999999874 3 468889999999999999985 44 37899999999999999874 54

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.23  E-value=0.0066  Score=55.83  Aligned_cols=55  Identities=24%  Similarity=0.404  Sum_probs=46.9

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      .++++.|+|++|.+++ ++ .+..+++|+.|+|++|++++ +|+ +..++.|+.|++++
T Consensus       172 l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         172 LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTTCCEEEEEE
T ss_pred             cccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCCCCEEEeeC
Confidence            3679999999999985 44 48999999999999999984 553 78999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.13  E-value=0.0095  Score=57.55  Aligned_cols=58  Identities=31%  Similarity=0.468  Sum_probs=47.8

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      ++.++.|+|++|.++ .+|..   +++|+.|+|++|+++ .+|..   +.+|+.|++++|+++ .+|
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp  340 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFP  340 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCC
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCC
Confidence            367999999999998 67753   578999999999998 78864   457899999999997 565

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.12  E-value=0.012  Score=53.50  Aligned_cols=58  Identities=36%  Similarity=0.492  Sum_probs=50.2

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      ++++.|+|++|.+++ ++ .+..+++|+.|++++|++++ +| .+..+++|+.|++++|.+.
T Consensus        68 ~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~  125 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS  125 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccc
Confidence            679999999999986 44 47889999999999999984 66 4888999999999999876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=94.95  E-value=0.016  Score=52.69  Aligned_cols=61  Identities=33%  Similarity=0.468  Sum_probs=39.3

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      +.+..++++.|.+++  +..+..+++|+.+++++|++++ +++ +..+++|+.|+|++|+++ .||
T Consensus       134 ~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~  194 (210)
T d1h6ta2         134 PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLR  194 (210)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCG
T ss_pred             ccccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CCh
Confidence            345666667776654  2345667777777777777764 332 667777777777777765 344

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=94.69  E-value=0.0014  Score=59.69  Aligned_cols=59  Identities=27%  Similarity=0.335  Sum_probs=40.8

Q ss_pred             CceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCC
Q 008008          446 PKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLS  507 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~  507 (581)
                      ..++.|+|++|.++ .++ .+..|++|+.|+|++|.++ .+|.....++.|+.|++++|+++
T Consensus        48 ~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             TTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             cccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            45777777777776 454 4777777888888877775 55654444556777777777776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.0073  Score=55.81  Aligned_cols=71  Identities=23%  Similarity=0.314  Sum_probs=47.4

Q ss_pred             ccccCccCCCCCCC------CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccc-cccCCCccccccc
Q 008008          431 YSWDGLNCSYNGYK------PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNL  501 (581)
Q Consensus       431 ~~W~Gv~C~~~~~~------~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~l  501 (581)
                      |....|.|...+..      +..++.|+|++|.++..-+..|..+++|+.|+|++|.+...+|. .+..++.++.+.+
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            45566777654321      34688999999998743334688899999999999988766543 2344444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=92.82  E-value=0.042  Score=52.72  Aligned_cols=58  Identities=33%  Similarity=0.575  Sum_probs=40.2

Q ss_pred             CCceeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccCccCCCCCc
Q 008008          445 PPKIISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDGNKLSGSVP  511 (581)
Q Consensus       445 ~~~l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~N~l~G~iP  511 (581)
                      ++.++.|+|++|+++ .+|..   +.+|+.|++++|+++ .++..   .+.|++|++++|.+. .+|
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp  114 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLP  114 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCC
T ss_pred             CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-ccc
Confidence            356788888888887 66654   356778888888776 34321   135888899998886 455

>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: YxiM N-terminal domain-like
domain: Hypothetical protein YxiM
species: Bacillus subtilis [TaxId: 1423]

Probab=92.74  E-value=0.031  Score=47.96  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             EEecCCCCccEEEEEEeeeccccCCCCeEEEEEEECCEEecccccccceeeeeEEeeecCCCCeEEEEEeecCCCCcChH
Q 008008          304 DFEIGDPTLQFYVYMHFAELESRQGNQYREFSIELNGNLWEKSVVPEYLQSKTISSTQPARGSKLNFSLCKTSNSTLPPI  383 (581)
Q Consensus       304 t~~~~~~~~~y~vrLhF~ei~~~~~~~~R~F~V~ing~~~~~~~~p~~~~~~~v~~~~~~~~~~~~isl~~t~~s~lp~~  383 (581)
                      .|...-|++.|.|.++|.|.        ...++.+.|......+.+.+....+.++   +..|.|+|.|...... ..|.
T Consensus        66 ~f~v~vPnG~Y~Vtv~~Gd~--------~~~~~~~eg~~~~~~~~g~~~~~~~~V~---VtDG~L~l~ft~~~~G-~~~~  133 (146)
T d2o14a1          66 TFNVDLPNGLYEVKVTLGNT--------ARASVAAEGVFQVINMTGDGAEDTFQIP---VTDGQLNLLVTEGKAG-TAFT  133 (146)
T ss_dssp             CEEEECCSEEEEEEEEESSC--------SEEEEEETTEEEEEEEESTTCEEEEEEE---ECSSEEEEEEEESSTT-SCCE
T ss_pred             eEEEECCCCeEEEEEEEecC--------CCccEEEeeEEeccccCCccEEEEEEEE---EECCeEEEEEecCCCC-CccE
Confidence            45555678999999999882        3457888888776666666644444444   5678999988765432 2377


Q ss_pred             HHHHHhhhh
Q 008008          384 LNAIEIYIL  392 (581)
Q Consensus       384 ln~le~~~l  392 (581)
                      ||+|||-.+
T Consensus       134 in~l~I~~~  142 (146)
T d2o14a1         134 LSALKIKKL  142 (146)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEec
Confidence            888887654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=92.61  E-value=0.0034  Score=57.09  Aligned_cols=56  Identities=29%  Similarity=0.366  Sum_probs=27.2

Q ss_pred             eeEeecCCCCCceecchhhhcccCCCeEeCCCCCCCCCcc--ccccCCCccccccccCccC
Q 008008          448 IISLNLTSEGLTGKISPSLSNLKSLENLDLSNNSLTGSIP--EFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       448 l~~l~Ls~n~l~G~ip~~l~~l~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~~L~ls~N~l  506 (581)
                      ++.|++++|.++. + +.+..+++|+.|+|++|+++. ++  ..+..+++|+.|++++|.+
T Consensus        95 L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          95 LEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             CCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccccc-c-ccccccccccccccccchhcc-ccccccccCCCccceeecCCCcc
Confidence            4455555555442 2 234455555555555555542 22  2344555555555555544

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.038  Score=52.84  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=27.8

Q ss_pred             cCCceEEEEeeccCCCC-----ChHHHHHHHHHHhc--CCCccccc
Q 008008          542 ADGSEVAIKMLSASSSQ-----GPKQFRTEVELIDY--YKNLSPTY  580 (581)
Q Consensus       542 ~~g~~VAVK~l~~~~~~-----~~~ef~~Ei~~l~~--H~NlV~l~  580 (581)
                      .+|+.||||+++.....     -.+.+.+|+++|++  |||||+++
T Consensus        21 ~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~   66 (299)
T d1ua2a_          21 NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLL   66 (299)
T ss_dssp             SCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEE
Confidence            45789999998643221     13579999999999  99999985

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.071  Score=50.51  Aligned_cols=59  Identities=24%  Similarity=0.356  Sum_probs=45.9

Q ss_pred             CceeEeecCCC-CCceecchhhhcccCCCeEeCCC-CCCCCCccccccCCCccccccccCc
Q 008008          446 PKIISLNLTSE-GLTGKISPSLSNLKSLENLDLSN-NSLTGSIPEFLSQLPLLRVLNLDGN  504 (581)
Q Consensus       446 ~~l~~l~Ls~n-~l~G~ip~~l~~l~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~ls~N  504 (581)
                      ++++.|+|+++ .+++.....+.++++|++|+|++ +.++......++++++|+.|+++++
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            56888888875 46766677788888888888888 5677666667788888888888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.026  Score=49.03  Aligned_cols=47  Identities=34%  Similarity=0.511  Sum_probs=38.2

Q ss_pred             cchhhhcccCCCeEeCCCCCCCCC--ccccccCCCccccccccCccCCC
Q 008008          462 ISPSLSNLKSLENLDLSNNSLTGS--IPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       462 ip~~l~~l~~L~~L~Ls~N~l~G~--iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      ++.....++.|+.|+|++|+++.-  ++..+..+++|+.|+|++|.++.
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~  105 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS  105 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc
Confidence            444456789999999999999853  45567789999999999999983

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.032  Score=53.06  Aligned_cols=57  Identities=26%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             ceeEeecCCCCCcee-cchhhhcccCCCeEeCCCCCCCCCccccccCCCccccccccC
Q 008008          447 KIISLNLTSEGLTGK-ISPSLSNLKSLENLDLSNNSLTGSIPEFLSQLPLLRVLNLDG  503 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~-ip~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~ls~  503 (581)
                      +++.|+|+++.++.. +..-+..+++|++|+|+++.+++..+..++++++|+.|++++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            344555554444322 222234445555555555555444444444555555555544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.52  E-value=0.025  Score=56.41  Aligned_cols=69  Identities=22%  Similarity=0.228  Sum_probs=43.6

Q ss_pred             CceeEeecCCCCCcee----cchhhh-cccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCCCCchHH
Q 008008          446 PKIISLNLTSEGLTGK----ISPSLS-NLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSGSVPTSL  514 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~----ip~~l~-~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~iP~~l  514 (581)
                      ..++.|+|++|.++..    ++..+. ..+.|+.|+|++|+++..    ++..+..+++|++|+|++|+++......+
T Consensus       340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l  417 (460)
T d1z7xw1         340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL  417 (460)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred             cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHH
Confidence            3577788888877532    333333 345678888888877632    45556667778888888887764333333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.95  E-value=0.12  Score=46.97  Aligned_cols=47  Identities=21%  Similarity=0.270  Sum_probs=21.7

Q ss_pred             cCCCCCceecch-hhhcccCCCeEeCCCCCCCCCccc-cccCCCccccccc
Q 008008          453 LTSEGLTGKISP-SLSNLKSLENLDLSNNSLTGSIPE-FLSQLPLLRVLNL  501 (581)
Q Consensus       453 Ls~n~l~G~ip~-~l~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~l  501 (581)
                      +.+|+++ .+|. .|..+++|+.|+|++|+++ .+|. .+.+++.|+.+++
T Consensus       184 l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         184 SDNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSE
T ss_pred             ccccccc-cccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcC
Confidence            3444444 2332 2445555555555555555 3332 3444555555444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.27  E-value=0.11  Score=51.38  Aligned_cols=63  Identities=33%  Similarity=0.474  Sum_probs=45.7

Q ss_pred             CceeEeecCCCCCcee----cchhhh-cccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGK----ISPSLS-NLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~----ip~~l~-~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      +.++.|+|++|.++..    +...+. ....|+.|+|++|+++..    ++..+..+++|++|++++|.++.
T Consensus        55 ~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          55 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            4688999999988521    111222 224799999999998753    56677888999999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.85  E-value=0.13  Score=49.65  Aligned_cols=62  Identities=26%  Similarity=0.382  Sum_probs=33.7

Q ss_pred             ceeEeecCCCCCcee-----cchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCC
Q 008008          447 KIISLNLTSEGLTGK-----ISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSG  508 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~-----ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G  508 (581)
                      .++.|+|+.|+++..     +...+..++.|+.|+|++|.++..    +...+..++.|++|+|++|++++
T Consensus       187 ~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~  257 (344)
T d2ca6a1         187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  257 (344)
T ss_dssp             TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             hhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCc
Confidence            355666666665421     222345556666666666665422    33445556666666666666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.29  E-value=0.17  Score=48.87  Aligned_cols=63  Identities=21%  Similarity=0.219  Sum_probs=44.0

Q ss_pred             CceeEeecCCCCCcee----cchhhhcccCCCeEeCCCCCCCCCccc----cccC--CCccccccccCccCCC
Q 008008          446 PKIISLNLTSEGLTGK----ISPSLSNLKSLENLDLSNNSLTGSIPE----FLSQ--LPLLRVLNLDGNKLSG  508 (581)
Q Consensus       446 ~~l~~l~Ls~n~l~G~----ip~~l~~l~~L~~L~Ls~N~l~G~iP~----~l~~--l~~L~~L~ls~N~l~G  508 (581)
                      ++++.|+|++|.++..    +...+..++.|+.|+|++|.+++.-..    .+.+  ...|+.|++++|+++.
T Consensus       215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            4678888888887532    445667888899999999988654222    2222  3578889999888764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.11  E-value=0.24  Score=42.72  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=30.9

Q ss_pred             ceeEeecCCCCCcee----cchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccC
Q 008008          447 KIISLNLTSEGLTGK----ISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKL  506 (581)
Q Consensus       447 ~l~~l~Ls~n~l~G~----ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l  506 (581)
                      .++.|+|++|.+...    +...+...+.|+.|+|++|.++..    +-..+...++|+.|++++|.+
T Consensus        45 ~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          45 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             ccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            455666666665421    222344445666666666665432    112344455666666666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.47  E-value=0.27  Score=42.45  Aligned_cols=72  Identities=24%  Similarity=0.419  Sum_probs=50.1

Q ss_pred             CceeEeecCCC-CCcee----cchhhhcccCCCeEeCCCCCCCCC----ccccccCCCccccccccCccCCCCCchHHHh
Q 008008          446 PKIISLNLTSE-GLTGK----ISPSLSNLKSLENLDLSNNSLTGS----IPEFLSQLPLLRVLNLDGNKLSGSVPTSLVA  516 (581)
Q Consensus       446 ~~l~~l~Ls~n-~l~G~----ip~~l~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~ls~N~l~G~iP~~l~~  516 (581)
                      +.++.|+|+++ .++..    +-..+...+.|+.|+|++|.+...    +-..+...+.|+.|+|++|.++..--..+++
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            57999999974 45421    333566778899999999988632    3344556789999999999987543333444


Q ss_pred             h
Q 008008          517 R  517 (581)
Q Consensus       517 ~  517 (581)
                      .
T Consensus        95 a   95 (167)
T d1pgva_          95 S   95 (167)
T ss_dssp             H
T ss_pred             H
Confidence            3