Citrus Sinensis ID: 008010

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
MSSTTPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSFSSSYSASSSSQQHQSITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHRYIIC
ccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHcccccHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHcccccccccEEEEEcccEEEEEcccccEEcccccccccccccccHHHHHHHHccHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHccccccccEEEEEEcccccccccEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccEEEEEEEHHHHHHHHcccccccccccccccccccccccccccEEEEEcc
cccccHHHEcccccccEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHcccccccHHHHHHcccccHEEEEHHEEHcccccEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccccccccccccccEccccccccccccccHHHHHHHHHcHHccHHHcEEEEcccccHHcccccccccccccHHHcHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHHcHcccccccEEEEEccccEEEEcccccEEEccccEEEEcccccHHHHHHHHHccHHHHHHHcccEEEEEEEccccEEEccccHHHHHHHcccccccccEEEEEccccccccEEEEEEEEcccccEEEEEEEEEEEcccHcccccccccccccccccccccEEEEEEHHHHHHHcccccccccccEEEEccccEEEEcccccccEEEEc
mssttpilhqnnhhqhrllfsftskttpfhslhslhfkrkpllsfsssysassssqqhqsitrvstapveyappppdfnfHQEISRLKKLRSRLAVSQSLShklsvldsdsrlknffndkHSNYFARVLASLNLDQLFLIKCVIAAGQehvlnlepeyvesEARSDIKSALYALVEFIDrldvngrnseakDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKferkttksqhvhesmecqfleihvpsgldlsqnTEYAAQAALWGieglpelgeiyplggsadrlglvdhetgeclpaamlpyCGRTLLEGLIRDLQAREFLYFKLygkqcitpvAIMTSSAKNNHERITSLCERLRwfgrgqssfqlfeqplvpavdaedgqwlvmrpfapvckpgghgaIWKLAHDKGIFKwfhdngrkgatvRQVSNVVAATDLTLLALAGIglhhgkklgfasckrssgateGINVLIEKknldgkwayglscieytefdkfgitrgpfssnglqadfpantniLYVDLASaelvgssenerslpgmvlntkkpivymdnfgdtHRYIIC
mssttpilhqnnhHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSFSSSYSASSSSQQHQSITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSqslshklsvldsdsrLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAkdavleieqvKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLiekknldgkwAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVgssenerslpgmvlntkkpivymdnfgDTHRYIIC
MSSTTPILhqnnhhqhRLLFSFTSKTTPFHSLHSLHFKRKPLLsfsssysassssqqhqsITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVaatdltllalaGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHRYIIC
***************HRLLFSFTSKTTPFHSLHSLHF**************************************************************************RLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKF*********VHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV**********GMVLNTKKPIVYMDNFGDTHRYII*
*********QNNHHQHRLLFSFTSKTTPFHSL*************************************************QEISRLKKLRSRLAV***LSHKLSVLDSDSRLKNFFNDKHS**FARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVES******KSALYALVEFIDRLD******************KDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLA***********************************NTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDK**********NGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGD*******
MSSTTPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSF*******************STAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFE**********ESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHRYIIC
****TPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLL***************QSITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNG******DAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKF***********ESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHRYIIC
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSTTPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSFSSSYSASSSSQQHQSITRVSTAPVEYAPPPPDFNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHRYIIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query581 2.2.26 [Sep-21-2011]
Q0GZS3 614 UDP-sugar pyrophospharyla N/A no 0.401 0.379 0.257 3e-06
Q5W915 600 UDP-sugar pyrophospharyla N/A no 0.507 0.491 0.246 9e-06
Q9C5I1 614 UDP-sugar pyrophosphoryla no no 0.612 0.579 0.222 1e-05
Q09WE7 600 UDP-sugar pyrophosphoryla no no 0.318 0.308 0.256 0.0001
Q6GEQ8395 Probable uridylyltransfer yes no 0.247 0.364 0.253 0.0001
Q7A0A0395 Probable uridylyltransfer yes no 0.247 0.364 0.240 0.0005
Q6G7E3395 Probable uridylyltransfer yes no 0.247 0.364 0.240 0.0005
Q7A4A4395 Probable uridylyltransfer yes no 0.247 0.364 0.240 0.0005
Q99S95395 Probable uridylyltransfer yes no 0.247 0.364 0.240 0.0005
Q5HE34395 Probable uridylyltransfer yes no 0.247 0.364 0.240 0.0006
>sp|Q0GZS3|USP_CUCME UDP-sugar pyrophospharylase OS=Cucumis melo GN=USP PE=1 SV=1 Back     alignment and function desciption
 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 105/256 (41%), Gaps = 23/256 (8%)

Query: 296 GGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGK-QCITPVAI 354
           GG  +RLG   +     LPA      G   L+  I  + A      +L G+ +   P  I
Sbjct: 148 GGLGERLGY--NGIKVALPAETT--TGTCFLQSYIEYVLALREASNRLAGESETEIPFVI 203

Query: 355 MTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRP---FAPVC 411
           MTS   + H R   L E   +FG   S  +L +Q  V  +D  + + L + P   +    
Sbjct: 204 MTSD--DTHTRTVELLESNSYFGMKPSQVKLLKQEKVACLDDNEAR-LAVDPHNKYRIQT 260

Query: 412 KPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLAL-AGIGLHHGKKL 470
           KP GHG +  L +  G+ K +H+ G +     Q +N      L   A+ A +G+   ++ 
Sbjct: 261 KPHGHGDVHALLYSSGLLKNWHNAGLRWVLFFQDTN-----GLLFKAIPASLGVSATREY 315

Query: 471 GFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF----GITRGPFSSNGLQ 526
              S      A E I  +    + DG+    +  +EY + D      G   G  ++    
Sbjct: 316 HVNSLAVPRKAKEAIGGITRLTHTDGRSM--VINVEYNQLDPLLRATGFPDGDVNNETGY 373

Query: 527 ADFPANTNILYVDLAS 542
           + FP N N L ++L S
Sbjct: 374 SPFPGNINQLILELGS 389
May function as the terminal enzyme of the myo-inositol oxidation (MIO) pathway. May also play a role in the salvage pathway for synthesis of nucleotide sugars. Can convert galactose-1-phosphate into glucose-1-phosphate by carrying out both the Gal-1-P conversion to UDP-Gal and, following an epimerase step, the subsequent reverse reaction of UDP-Glc to Glc-1-P.
Cucumis melo (taxid: 3656)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 6EC: 4
>sp|Q5W915|USP_PEA UDP-sugar pyrophospharylase OS=Pisum sativum GN=USP PE=1 SV=1 Back     alignment and function description
>sp|Q9C5I1|USP_ARATH UDP-sugar pyrophosphorylase OS=Arabidopsis thaliana GN=USP PE=1 SV=1 Back     alignment and function description
>sp|Q09WE7|USP1_SOYBN UDP-sugar pyrophosphorylase 1 OS=Glycine max GN=USP1 PE=1 SV=1 Back     alignment and function description
>sp|Q6GEQ8|URTF_STAAR Probable uridylyltransferase SAR2262 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2262 PE=3 SV=1 Back     alignment and function description
>sp|Q7A0A0|URTF_STAAW Probable uridylyltransferase MW2097 OS=Staphylococcus aureus (strain MW2) GN=MW2097 PE=3 SV=1 Back     alignment and function description
>sp|Q6G7E3|URTF_STAAS Probable uridylyltransferase SAS2072 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2072 PE=3 SV=1 Back     alignment and function description
>sp|Q7A4A4|URTF_STAAN Probable uridylyltransferase SA1974 OS=Staphylococcus aureus (strain N315) GN=SA1974 PE=1 SV=1 Back     alignment and function description
>sp|Q99S95|URTF_STAAM Probable uridylyltransferase SAV2171 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2171 PE=1 SV=1 Back     alignment and function description
>sp|Q5HE34|URTF_STAAC Probable uridylyltransferase SACOL2161 OS=Staphylococcus aureus (strain COL) GN=SACOL2161 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
224109282 877 predicted protein [Populus trichocarpa] 0.974 0.645 0.714 0.0
255574832 884 conserved hypothetical protein [Ricinus 0.888 0.583 0.718 0.0
225448507 860 PREDICTED: uncharacterized protein LOC10 0.953 0.644 0.690 0.0
356568154 857 PREDICTED: uncharacterized protein LOC10 0.951 0.645 0.677 0.0
147794750 866 hypothetical protein VITISV_024684 [Viti 0.953 0.639 0.679 0.0
297820348 883 hypothetical protein ARALYDRAFT_486043 [ 0.975 0.642 0.646 0.0
18410414 883 UDP-glucose pyrophosphorylase 3 [Arabido 0.972 0.639 0.650 0.0
357461351 868 hypothetical protein MTR_3g071440 [Medic 0.972 0.650 0.654 0.0
7573499 871 putative protein [Arabidopsis thaliana] 0.953 0.636 0.640 0.0
449441288 865 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.962 0.646 0.639 0.0
>gi|224109282|ref|XP_002315147.1| predicted protein [Populus trichocarpa] gi|222864187|gb|EEF01318.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  803 bits (2075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/589 (71%), Positives = 483/589 (82%), Gaps = 23/589 (3%)

Query: 2   SSTTPILHQNNHHQHRLLFSFTSKTTPFHSLHSLHFKRKPLLSFSSSYSASSSSQQHQSI 61
           SST  +L  NN  ++  LFSF S    F+   SL FK+    S      + SSS      
Sbjct: 10  SSTNILLRYNNKKRNDFLFSFNS-INLFNK--SLPFKKP---SLHPPLLSLSSSPSKPLT 63

Query: 62  TRVSTAPVEYAPPPPD-FNFHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDK 120
           TRVS APVEYAPP PD FNFHQEISRL+ LRS+LA S++L+ K SVL+ DSR+K FF   
Sbjct: 64  TRVSIAPVEYAPPAPDSFNFHQEISRLQSLRSKLAHSKTLNGKQSVLNDDSRVKRFFK-- 121

Query: 121 HSNYFARVLASLNLD--QLFLIKCVIAAGQEHVLNLEP-EYVESEA----RSDIKSALYA 173
                +R L S+NL   +LFL+KC++AAGQEHV++LE  E VESEA    R+ +KSALY+
Sbjct: 122 -IGGVSRFLDSINLTSRELFLLKCLVAAGQEHVVSLEGFELVESEAVESVRTSVKSALYS 180

Query: 174 LVEFIDRLDVNGRNSEAKDAV-----LEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQV 228
           LVE I+  D++   ++  + +     L  E++KDL KLLK+L E+E+FYDC+GG+IGYQ+
Sbjct: 181 LVEIIEGFDLSDNGNKGLERINYGENLTDEEIKDLKKLLKSLGEVEEFYDCIGGVIGYQI 240

Query: 229 EVLELLAQSKFERKTTK-SQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLP 287
            VLELL QS F+++TT  SQH+ ESMECQFLEIH PSGLDLS+NTEYA+QAALWGIEGLP
Sbjct: 241 MVLELLFQSTFKKQTTNWSQHIKESMECQFLEIHAPSGLDLSKNTEYASQAALWGIEGLP 300

Query: 288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQ 347
           +LGEIYPLGGSADRLGLVD +TGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFK+YGKQ
Sbjct: 301 DLGEIYPLGGSADRLGLVDPDTGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKIYGKQ 360

Query: 348 CITPVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPF 407
           CITPVAIMTSSAKNNHE ITSLCERL WFGRGQSSFQLFEQPLVPA+ AEDGQWLV +PF
Sbjct: 361 CITPVAIMTSSAKNNHEHITSLCERLSWFGRGQSSFQLFEQPLVPAISAEDGQWLVTKPF 420

Query: 408 APVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHG 467
           APVCKPGGHG IWKLA+DKGIF+WF+D+ RKGATVRQVSNVVAATDLTLLALAGIGL H 
Sbjct: 421 APVCKPGGHGVIWKLAYDKGIFEWFYDHDRKGATVRQVSNVVAATDLTLLALAGIGLRHR 480

Query: 468 KKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA 527
           KKLGFASCKR+SGATEGINVLIEKKNLDG+WAYGLSCIEYTEFDKF IT GP S+NGLQA
Sbjct: 481 KKLGFASCKRNSGATEGINVLIEKKNLDGQWAYGLSCIEYTEFDKFEITGGPCSTNGLQA 540

Query: 528 DFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH 576
           +FPANTNILYVDL S ELV SS NE+SLPGMVLNTKKPIVYMD++G+ H
Sbjct: 541 EFPANTNILYVDLPSLELVASSNNEKSLPGMVLNTKKPIVYMDHYGNCH 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255574832|ref|XP_002528323.1| conserved hypothetical protein [Ricinus communis] gi|223532278|gb|EEF34081.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|225448507|ref|XP_002273020.1| PREDICTED: uncharacterized protein LOC100241552 [Vitis vinifera] gi|297736576|emb|CBI25447.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356568154|ref|XP_003552278.1| PREDICTED: uncharacterized protein LOC100788781 [Glycine max] Back     alignment and taxonomy information
>gi|147794750|emb|CAN60362.1| hypothetical protein VITISV_024684 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297820348|ref|XP_002878057.1| hypothetical protein ARALYDRAFT_486043 [Arabidopsis lyrata subsp. lyrata] gi|297323895|gb|EFH54316.1| hypothetical protein ARALYDRAFT_486043 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18410414|ref|NP_567031.1| UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana] gi|332645948|gb|AEE79469.1| UDP-glucose pyrophosphorylase 3 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357461351|ref|XP_003600957.1| hypothetical protein MTR_3g071440 [Medicago truncatula] gi|355490005|gb|AES71208.1| hypothetical protein MTR_3g071440 [Medicago truncatula] Back     alignment and taxonomy information
>gi|7573499|emb|CAB87858.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449441288|ref|XP_004138414.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101221986 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query581
TAIR|locus:2082038 883 UGP3 "UDP-glucose pyrophosphor 0.955 0.628 0.629 5e-186
TAIR|locus:2149574 614 USP "UDP-sugar pyrophosphoryla 0.507 0.480 0.239 3.7e-06
TAIR|locus:2082038 UGP3 "UDP-glucose pyrophosphorylase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1804 (640.1 bits), Expect = 5.0e-186, P = 5.0e-186
 Identities = 363/577 (62%), Positives = 428/577 (74%)

Query:    19 LFSFTSKTTP--FHSLH---SLHFKRKPLLXXXXXXXXXXXXXXXXXITRVSTAPVEYAP 73
             LF F + T+P  F SLH    L F                       +  VST PVEY+ 
Sbjct:    19 LFHFRTTTSPRSFSSLHFRKPLLFLSSSS-SFSSKLQQSEQQCNNHQVRHVSTVPVEYST 77

Query:    74 P-PPDFN-FHQEISRLKKLRSRLAVSQSLSHKLSVLDSDSRLKNFFNDKHSNYFARVLA- 130
             P PP+ + F  EI RLK L S+L VS+ L  K +V+D+DSR++ FF++      ++V   
Sbjct:    78 PTPPESDDFLSEIDRLKSLLSKLDVSKDLRRKDAVIDADSRVRRFFSENRGG-LSKVFGY 136

Query:   131 -SLNLDQLFLIKCVIAAGQEHVL--NLEPEYVESE----ARSDIKSALYALVEFIDRLDV 183
               LN +++FL+KCVIAAGQEH L  N E  + E E     RS +K+ALYALVE I+R DV
Sbjct:   137 LGLNSNEMFLVKCVIAAGQEHALCMNYEEAFGEEEEEYTVRSSVKNALYALVEMIERFDV 196

Query:   184 NGRNSEAK---DAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFE 240
             N    + +     VL+ E++    K L  L EIEQFYDC+GGIIGYQV VLELL QS   
Sbjct:   197 NSSGYKGRREMGTVLDSEEIAHFRKFLTFLEEIEQFYDCIGGIIGYQVMVLELLHQSSKR 256

Query:   241 RKTTKSQHVHESMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSAD 300
             R T +SQ V ES+ CQ+LE+H PS LDL+Q  +YA+QAALWGIEGLP+LGEIYPLGG+AD
Sbjct:   257 RNTNRSQLVEESLGCQYLEMHTPSVLDLTQEEDYASQAALWGIEGLPDLGEIYPLGGAAD 316

Query:   301 RLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAK 360
             RLGL+D ETGECLPAAML +CGRTLLEGLIRDLQAREFLYFKLYGKQC+TPVAIMTS+AK
Sbjct:   317 RLGLIDSETGECLPAAMLAHCGRTLLEGLIRDLQAREFLYFKLYGKQCVTPVAIMTSAAK 376

Query:   361 NNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIW 420
             NNHE ++SLCERL+WFGRGQS+F+LFEQPLVPAV AEDGQW+V +PF PV KPGGHG IW
Sbjct:   377 NNHEHVSSLCERLKWFGRGQSNFRLFEQPLVPAVSAEDGQWIVSKPFVPVSKPGGHGVIW 436

Query:   421 KLAHDKGIFKWFHDNGRKGATVRQVSNVVXXXXXXXXXXXGIGLHHGKKLGFASCKRSSG 480
             KLA+DKG+F WF+D+GRKGATVRQVSNVV           GIGL + KKLGFASCKR++G
Sbjct:   437 KLAYDKGVFNWFYDHGRKGATVRQVSNVVAATDVTLLALAGIGLRYNKKLGFASCKRNAG 496

Query:   481 ATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGIT-RGPFSSNGLQADFPANTNILYVD 539
             ATEGINVL+EKKN DGKW YG+SCIEYTEFDKF I+ R P SSNGLQADFPANTNILYVD
Sbjct:   497 ATEGINVLMEKKNFDGKWEYGISCIEYTEFDKFDISNRSP-SSNGLQADFPANTNILYVD 555

Query:   540 LASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTH 576
             L SAEL+GSS N +SLP MVLNTKK I Y+D +GD H
Sbjct:   556 LHSAELIGSSSNAKSLPNMVLNTKKRIEYLDQYGDYH 592
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
GO:0016036 "cellular response to phosphate starvation" evidence=RCA
GO:0019375 "galactolipid biosynthetic process" evidence=RCA
TAIR|locus:2149574 USP "UDP-sugar pyrophosphorylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.1665.1
hypothetical protein (811 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VI1540
UDP-sulfoquinovose synthase (EC-3.13.1.1) (483 aa)
   •  • 0.422
estExt_Genewise1_v1.C_LG_IX1928
hypothetical protein (432 aa)
   •  • 0.420

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
cd04193323 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphoryl 4e-12
PLN02830 615 PLN02830, PLN02830, UDP-sugar pyrophosphorylase 9e-10
COG4284 472 COG4284, COG4284, UDP-glucose pyrophosphorylase [C 7e-08
cd06424315 cd06424, UGGPase, UGGPase catalyzes the synthesis 4e-07
PTZ00339482 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyroph 5e-05
cd04180266 cd04180, UGPase_euk_like, Eukaryotic UGPase-like i 0.004
>gnl|CDD|133036 cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information 
 Score = 67.2 bits (165), Expect = 4e-12
 Identities = 56/224 (25%), Positives = 84/224 (37%), Gaps = 33/224 (14%)

Query: 296 GGSADRLGLVDHETGECLPAAMLPYCG----RTLLEGLIRDLQAREFLYFKLYGKQCITP 351
           GG   RLG          P  M P  G    ++L +     +   + L  +  GK+   P
Sbjct: 23  GGQGTRLGF-------DGPKGMFP-VGLPSKKSLFQLQAERILKLQELAGEASGKKVPIP 74

Query: 352 VAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVC 411
             IMTS  +  HE      +   +FG        F+Q ++P VD  DG+ L+        
Sbjct: 75  WYIMTS--EATHEETRKFFKENNYFGLDPEQVHFFQQGMLPCVD-FDGKILLEEKGKIAM 131

Query: 412 KPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAG---IGLHHGK 468
            P G+G ++K     GI +     G K   V  V N+       L+ +A    IG    K
Sbjct: 132 APNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNI-------LVKVADPVFIGFCISK 184

Query: 469 KLGFAS-CKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFD 511
                +   R    TE + V++     DGK       +EY+E  
Sbjct: 185 GADVGAKVVRKRYPTEKVGVVVLV---DGKPQV----VEYSEIS 221

UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase. Length = 323
>gnl|CDD|215444 PLN02830, PLN02830, UDP-sugar pyrophosphorylase Back     alignment and domain information
>gnl|CDD|226734 COG4284, COG4284, UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|133046 cd06424, UGGPase, UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>gnl|CDD|240368 PTZ00339, PTZ00339, UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|133023 cd04180, UGPase_euk_like, Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 581
PLN02830 615 UDP-sugar pyrophosphorylase 100.0
PLN02435493 probable UDP-N-acetylglucosamine pyrophosphorylase 100.0
PTZ00339482 UDP-N-acetylglucosamine pyrophosphorylase; Provisi 100.0
cd06424315 UGGPase UGGPase catalyzes the synthesis of UDP-Glu 100.0
KOG2388 477 consensus UDP-N-acetylglucosamine pyrophosphorylas 100.0
cd04193323 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catala 100.0
cd00897300 UGPase_euk Eukaryotic UGPase catalyses the synthes 100.0
PF01704 420 UDPGP: UTP--glucose-1-phosphate uridylyltransferas 100.0
PLN02474 469 UTP--glucose-1-phosphate uridylyltransferase 100.0
COG4284 472 UDP-glucose pyrophosphorylase [Carbohydrate transp 100.0
cd04180266 UGPase_euk_like Eukaryotic UGPase-like includes UD 100.0
KOG2638 498 consensus UDP-glucose pyrophosphorylase [Carbohydr 100.0
PRK05293 380 glgC glucose-1-phosphate adenylyltransferase; Prov 97.67
cd02540229 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU 97.49
PRK00844 407 glgC glucose-1-phosphate adenylyltransferase; Prov 97.43
cd04197217 eIF-2B_epsilon_N The N-terminal domain of epsilon 97.42
PRK14356 456 glmU bifunctional N-acetylglucosamine-1-phosphate 97.42
cd06915223 NTP_transferase_WcbM_like WcbM_like is a subfamily 97.41
PRK05450245 3-deoxy-manno-octulosonate cytidylyltransferase; P 97.34
cd04181217 NTP_transferase NTP_transferases catalyze the tran 97.33
cd02509274 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf 97.31
PRK14352 482 glmU bifunctional N-acetylglucosamine-1-phosphate 97.3
cd02517239 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th 97.28
PRK15480292 glucose-1-phosphate thymidylyltransferase RfbA; Pr 97.27
PRK02862 429 glgC glucose-1-phosphate adenylyltransferase; Prov 97.24
PF00483248 NTP_transferase: Nucleotidyl transferase This Pros 97.2
PRK14360 450 glmU bifunctional N-acetylglucosamine-1-phosphate 97.17
TIGR02092369 glgD glucose-1-phosphate adenylyltransferase, GlgD 97.17
PRK14359 430 glmU bifunctional N-acetylglucosamine-1-phosphate 97.15
cd02508200 ADP_Glucose_PP ADP-glucose pyrophosphorylase is in 97.14
PLN02241 436 glucose-1-phosphate adenylyltransferase 97.03
PRK14358 481 glmU bifunctional N-acetylglucosamine-1-phosphate 96.98
TIGR01207286 rmlA glucose-1-phosphate thymidylyltransferase, sh 96.98
PRK14355 459 glmU bifunctional N-acetylglucosamine-1-phosphate 96.94
cd04189236 G1P_TT_long G1P_TT_long represents the long form o 96.94
cd06425233 M1P_guanylylT_B_like_N N-terminal domain of the M1 96.9
TIGR00454183 conserved hypothetical protein TIGR00454. At this 96.89
TIGR01208353 rmlA_long glucose-1-phosphate thymidylylransferase 96.85
PRK00725 425 glgC glucose-1-phosphate adenylyltransferase; Prov 96.85
cd06428257 M1P_guanylylT_A_like_N N-terminal domain of M1P_gu 96.84
TIGR02091361 glgC glucose-1-phosphate adenylyltransferase. This 96.73
COG2266177 GTP:adenosylcobinamide-phosphate guanylyltransfera 96.73
PRK14357 448 glmU bifunctional N-acetylglucosamine-1-phosphate 96.72
cd02524253 G1P_cytidylyltransferase G1P_cytidylyltransferase 96.69
PRK13385230 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 96.68
cd06422221 NTP_transferase_like_1 NTP_transferase_like_1 is a 96.66
TIGR01105297 galF UTP-glucose-1-phosphate uridylyltransferase, 96.66
COG0746192 MobA Molybdopterin-guanine dinucleotide biosynthes 96.59
cd04182186 GT_2_like_f GT_2_like_f is a subfamily of the glyc 96.51
PLN02728252 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 96.47
PRK10122297 GalU regulator GalF; Provisional 96.46
cd06426220 NTP_transferase_like_2 NTP_trnasferase_like_2 is a 96.43
COG1213239 Predicted sugar nucleotidyltransferases [Cell enve 96.41
PF01128221 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidyly 96.39
TIGR02623254 G1P_cyt_trans glucose-1-phosphate cytidylyltransfe 96.36
cd02538240 G1P_TT_short G1P_TT_short is the short form of glu 96.19
TIGR01479 468 GMP_PMI mannose-1-phosphate guanylyltransferase/ma 96.17
PRK00560196 molybdopterin-guanine dinucleotide biosynthesis pr 96.15
COG1207 460 GlmU N-acetylglucosamine-1-phosphate uridyltransfe 96.12
cd02513223 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- 96.04
TIGR03310188 matur_ygfJ molybdenum hydroxylase accessory protei 96.04
TIGR01173 451 glmU UDP-N-acetylglucosamine diphosphorylase/gluco 96.03
PRK14353 446 glmU bifunctional N-acetylglucosamine-1-phosphate 96.02
PRK13368238 3-deoxy-manno-octulosonate cytidylyltransferase; P 95.88
cd02503181 MobA MobA catalyzes the formation of molybdopterin 95.87
PF12804160 NTP_transf_3: MobA-like NTP transferase domain; PD 95.78
TIGR00453217 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl 95.71
cd04198214 eIF-2B_gamma_N The N-terminal domain of gamma subu 95.67
TIGR03202190 pucB xanthine dehydrogenase accessory protein pucB 95.67
PLN02917293 CMP-KDO synthetase 95.49
TIGR02665186 molyb_mobA molybdopterin-guanine dinucleotide bios 95.49
PRK02726200 molybdopterin-guanine dinucleotide biosynthesis pr 95.47
TIGR01099260 galU UTP-glucose-1-phosphate uridylyltransferase. 95.46
cd02516218 CDP-ME_synthetase CDP-ME synthetase is involved in 95.45
COG1209286 RfbA dTDP-glucose pyrophosphorylase [Cell envelope 95.43
PRK00155227 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl 95.34
PRK00317193 mobA molybdopterin-guanine dinucleotide biosynthes 95.29
PRK14490369 putative bifunctional molybdopterin-guanine dinucl 95.2
COG1208358 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylas 95.18
PRK14489366 putative bifunctional molybdopterin-guanine dinucl 94.96
cd02541267 UGPase_prokaryotic Prokaryotic UGPase catalyses th 94.92
cd02523229 PC_cytidylyltransferase Phosphocholine cytidylyltr 94.76
PRK09451 456 glmU bifunctional N-acetylglucosamine-1-phosphate 94.63
cd02507216 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma 94.61
PRK14500346 putative bifunctional molybdopterin-guanine dinucl 94.58
PRK09382378 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosp 94.31
COG1211230 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synt 94.23
PRK14354 458 glmU bifunctional N-acetylglucosamine-1-phosphate 94.2
cd04183231 GT2_BcE_like GT2_BcbE_like is likely involved in t 93.76
PRK13389302 UTP--glucose-1-phosphate uridylyltransferase subun 93.26
TIGR00466238 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe 92.76
KOG1322 371 consensus GDP-mannose pyrophosphorylase/mannose-1- 91.62
cd02518233 GT2_SpsF SpsF is a glycosyltrnasferase implicated 90.18
PRK15460 478 cpsB mannose-1-phosphate guanyltransferase; Provis 89.88
COG0836333 {ManC} Mannose-1-phosphate guanylyltransferase [Ce 87.34
COG0448 393 GlgC ADP-glucose pyrophosphorylase [Carbohydrate t 85.1
COG1210291 GalU UDP-glucose pyrophosphorylase [Cell envelope 83.1
>PLN02830 UDP-sugar pyrophosphorylase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-81  Score=695.76  Aligned_cols=375  Identities=25%  Similarity=0.325  Sum_probs=328.8

Q ss_pred             chhHHhhccCCccHHHHHHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHH
Q 008010          123 NYFARVLASLNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKD  202 (581)
Q Consensus       123 ~~~~~~~~~l~~~~~~l~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~e  202 (581)
                      +++.+++..|++++++|++.|.++||+|||++   |++.+                                +++   ++
T Consensus        14 ~~~~~~~~~~~~~~~~l~~~L~~~gQ~HL~~~---w~~l~--------------------------------~~~---~e   55 (615)
T PLN02830         14 PSLHSNLALLSPDQRALVRRLLELGQSHLFEH---WPEPG--------------------------------VDD---DD   55 (615)
T ss_pred             cccccccccCChhHHHHHHHHHHcCcHHHHhh---hhccC--------------------------------CCH---HH
Confidence            68999999999999999999999999999999   99811                                244   48


Q ss_pred             HHHHHHHHHHhhccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-c-CCCCcccccCchHHHHHHH
Q 008010          203 LNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-H-VPSGLDLSQNTEYAAQAAL  280 (581)
Q Consensus       203 k~~Ll~qL~~id~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~-vP~g~~ls~~~~~~~~~~~  280 (581)
                      |++|++||..+|..|+  ||+.+|+.++.+++.++.+   ..          ++|+.+ | +|.+..+++.+......++
T Consensus        56 ~~~L~~qL~~ld~~y~--g~l~~~~~~~~~~l~~s~~---~~----------~~~~~i~P~vp~~~~~~~~~~~~~~~~~  120 (615)
T PLN02830         56 KRRLLEQVARLDESYP--GGLAAYVSNAKELLADSKE---GV----------NPFEGWTPSVPEGEVLEYGSEEFVELEE  120 (615)
T ss_pred             HHHHHHHHHhcccccc--chHHHHHHHHHHHHhhccc---CC----------CchhhcccCCCccccccccchhhhHHHH
Confidence            9999999999999995  9999999999999986521   11          256665 5 5888888876655555667


Q ss_pred             HHHhccCceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcC-CcccceEEEecCCC
Q 008010          281 WGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYG-KQCITPVAIMTSSA  359 (581)
Q Consensus       281 ~G~e~L~kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g-~~~~IPl~IMTS~~  359 (581)
                      +|.+.|.++|+|+||||||||||+++||+  +|||++ + +|+||||++++||+++|++|.++.+ ..+.||||||||+ 
T Consensus       121 ~Gl~~l~kvavllLaGGlGTRLG~~~pK~--~lpv~~-~-~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~-  195 (615)
T PLN02830        121 AGLREAGNAAFVLVAGGLGERLGYSGIKV--ALPTET-A-TGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSD-  195 (615)
T ss_pred             HHHHHhCcEEEEEecCCcccccCCCCCCc--ceeccc-C-CCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCc-
Confidence            89999999999999999999999999999  999984 4 6999999999999999999977553 5589999999999 


Q ss_pred             CCchHHHHHHHHHcCCCCCCCCceEEEecCceeeEecCCCcccccc--CCCccccCCCCcHHHHHHHhcCchHHHHHcCc
Q 008010          360 KNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMR--PFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGR  437 (581)
Q Consensus       360 ~~The~T~~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~--~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gi  437 (581)
                       +||++|++||++|+|||++++||+||+|+++||+++++|++++++  +++++|+||||||||.||+++|+||+|+++|+
T Consensus       196 -~T~~~T~~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~  274 (615)
T PLN02830        196 -DTHARTLKLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGK  274 (615)
T ss_pred             -chhHHHHHHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCC
Confidence             699999999999999999999999999999999998889999987  88999999999999999999999999999999


Q ss_pred             eEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCC---
Q 008010          438 KGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKF---  513 (581)
Q Consensus       438 kyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~---  513 (581)
                      ||+|||||||+|++ +||.   |+|+++.++.++++++|+|  .+.|.+|++|..++.||++  +++||||+|++++   
T Consensus       275 ~yi~v~~vDN~L~~~Adp~---flG~~~~~~~d~~~kvv~K--~~~E~vGvi~~~~~~dG~~--l~~vVEYse~~~ll~~  347 (615)
T PLN02830        275 KWVVFFQDTNGLVFKAIPA---ALGVSATKGFDMNSLAVPR--KAKEAIGAIAKLTHKDGRE--MVINVEYNQLDPLLRA  347 (615)
T ss_pred             EEEEEEeccchhhhcccHH---HhHHHHhcCCceEEEEEEC--CCCcccceEEEEecCCCCe--eeEEEeecccCHHHHh
Confidence            99999999999999 9987   5999999999999997665  5567777878766678873  5689999999986   


Q ss_pred             -CCCCCCCCCCCcccccCCccceeEEeHHHHHHhhcccCCCCcccccccCCCCc
Q 008010          514 -GITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPI  566 (581)
Q Consensus       514 -~~~~~~~~dg~l~S~F~~NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkI  566 (581)
                       ..++++..+++.+|+||+||||+|++|+.|+++++. ....||.+|  +.|.+
T Consensus       348 a~~p~g~l~~~~~~s~FPgNtN~L~v~L~a~~~~l~~-~~~~lp~iv--NpK~~  398 (615)
T PLN02830        348 TGHPDGDVNDETGYSPFPGNINQLILKLGPYVKELAK-TGGVIEEFV--NPKYK  398 (615)
T ss_pred             ccCCCcccccccccccCCCCceeeEeeHHHHHHHHHh-CCCccceec--cCccc
Confidence             234455556788999999999999999999999985 677899988  77855

>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase Back     alignment and domain information
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional Back     alignment and domain information
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose Back     alignment and domain information
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc Back     alignment and domain information
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose Back     alignment and domain information
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2 Back     alignment and domain information
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes Back     alignment and domain information
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU Back     alignment and domain information
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases Back     alignment and domain information
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars Back     alignment and domain information
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose Back     alignment and domain information
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide Back     alignment and domain information
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional Back     alignment and domain information
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry Back     alignment and domain information
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit Back     alignment and domain information
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch Back     alignment and domain information
>PLN02241 glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form Back     alignment and domain information
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins Back     alignment and domain information
>TIGR00454 conserved hypothetical protein TIGR00454 Back     alignment and domain information
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form Back     alignment and domain information
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional Back     alignment and domain information
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase Back     alignment and domain information
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase Back     alignment and domain information
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose Back     alignment and domain information
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional Back     alignment and domain information
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family Back     alignment and domain information
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit Back     alignment and domain information
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism] Back     alignment and domain information
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function Back     alignment and domain information
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Back     alignment and domain information
>PRK10122 GalU regulator GalF; Provisional Back     alignment and domain information
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family Back     alignment and domain information
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate [] Back     alignment and domain information
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase Back     alignment and domain information
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase Back     alignment and domain information
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Back     alignment and domain information
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional Back     alignment and domain information
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety Back     alignment and domain information
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family Back     alignment and domain information
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase Back     alignment and domain information
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional Back     alignment and domain information
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide Back     alignment and domain information
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B Back     alignment and domain information
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Back     alignment and domain information
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2 Back     alignment and domain information
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB Back     alignment and domain information
>PLN02917 CMP-KDO synthetase Back     alignment and domain information
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial Back     alignment and domain information
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional Back     alignment and domain information
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase Back     alignment and domain information
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production Back     alignment and domain information
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed Back     alignment and domain information
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed Back     alignment and domain information
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional Back     alignment and domain information
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional Back     alignment and domain information
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose Back     alignment and domain information
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline Back     alignment and domain information
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity Back     alignment and domain information
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional Back     alignment and domain information
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional Back     alignment and domain information
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism] Back     alignment and domain information
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional Back     alignment and domain information
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule Back     alignment and domain information
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional Back     alignment and domain information
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase Back     alignment and domain information
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat Back     alignment and domain information
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
3oc9_A405 Crystal Structure Of Putative Udp-N-Acetylglucosami 3e-07
1jvd_A 522 Crystal Structure Of Human Agx2 Complexed With Udpg 5e-04
1jv1_A 505 Crystal Structure Of Human Agx1 Complexed With Udpg 5e-04
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine Pyrophosphorylase From Entamoeba Histolytica Length = 405 Back     alignment and structure 
Iteration: 1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 292 IYPLGGSADRLGLVDHETGE-CLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCIT 350
           I P GG   RLG  +H  G   LP  +     +   E L+R LQ     Y   + K  + 
Sbjct: 39  ITPAGGQGSRLGF-EHPKGMFVLPFEIPKSIFQMTSERLLR-LQELASEY--SHQKNVMI 94
Query: 351 PVAIMTSSAKNNHERITSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPV 410
              +MT+  +   E I +  +  ++FG        F Q ++P VD  +G+ L  +   P 
Sbjct: 95  HWFLMTN--EETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVVDF-NGKILYEKKDKPY 151
Query: 411 CKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNVV 449
             P GHG ++K   D GI ++ ++ G K +    V N++
Sbjct: 152 MAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNIL 190
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac Length = 522 Back     alignment and structure
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac Length = 505 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query581
2yqc_A 486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 3e-41
1jv1_A 505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 3e-40
3oc9_A 405 UDP-N-acetylglucosamine pyrophosphorylase; structu 5e-32
3gue_A 484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 1e-28
2oeg_A 505 UTP-glucose-1-phosphate uridylyltransferase 2, put 4e-28
3ogz_A 630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 9e-28
3r3i_A 528 UTP--glucose-1-phosphate uridylyltransferase; ross 2e-25
2icy_A 469 Probable UTP-glucose-1-phosphate uridylyltransfera 1e-24
2i5k_A 488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 2e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Length = 486 Back     alignment and structure
 Score =  154 bits (391), Expect = 3e-41
 Identities = 68/436 (15%), Positives = 126/436 (28%), Gaps = 73/436 (16%)

Query: 139 LIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIE 198
           +I     A Q+ +                        ++ D L ++ +            
Sbjct: 9   IIDSFKQANQDQLF-----------------------QYYDSLTIDQQQ----------- 34

Query: 199 QVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFL 258
                 + +  L+ I    +    +I    + ++    +   R  T+             
Sbjct: 35  ------EFIDQLSTI----EEPAKLISTVEQAIQFSQTNSTSRNFTQLP----------- 73

Query: 259 EIHVPSGLDLSQNTEYAAQAALWGIEGLPELGEIYPLGGSADRLGLVDHETGECLPAAML 318
                S LDLS++             G  E+  +   GG   RLG    +    +     
Sbjct: 74  NEQTASTLDLSKDILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIE---- 129

Query: 319 PYCGRTLLEGLIRDLQAREFLYFKLY--GKQCITPVAIMTSSAKNNHERITSLCERLRWF 376
               ++L +     +   E L  +     K+ I    IMTS          S      +F
Sbjct: 130 LPSQKSLFQIQAEKILKIEQLAQQYLKSTKKPIINWYIMTSG--PTRNATESFFIENNYF 187

Query: 377 GRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNG 436
           G        F Q  +P  + +  + L+    +    P G+G ++K   D GI    +  G
Sbjct: 188 GLNSHQVIFFNQGTLPCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKG 247

Query: 437 RKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFAS-CKRSSGATEGINVLIEKKNLD 495
            K   +  V N +      +     IG    KK   A+   R   A E + +++     +
Sbjct: 248 IKHIHMYCVDNCLVKVADPIF----IGFAIAKKFDLATKVVRKRDANESVGLIV-LDQDN 302

Query: 496 GKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELVGSSENERSL 555
            K       IEY+E  +    +     +       AN    Y  +     +         
Sbjct: 303 QKP----CVIEYSEISQELANKKDPQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQK 358

Query: 556 PGMVLNTKKPIVYMDN 571
                  KK I  ++ 
Sbjct: 359 YLPFHIAKKKIPSLNL 374
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Length = 505 Back     alignment and structure
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Length = 405 Back     alignment and structure
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Length = 484 Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Length = 505 Back     alignment and structure
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Length = 630 Back     alignment and structure
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Length = 528 Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query581
3ogz_A 630 UDP-sugar pyrophosphorylase; LEFT handed beta heli 100.0
2yqc_A 486 UDP-N-acetylglucosamine pyrophosphorylase; uridine 100.0
1jv1_A 505 Glcnac1P uridyltransferase isoform 1: AGX1; nucleo 100.0
3r3i_A 528 UTP--glucose-1-phosphate uridylyltransferase; ross 100.0
3oc9_A 405 UDP-N-acetylglucosamine pyrophosphorylase; structu 100.0
3gue_A 484 UTP-glucose-1-phosphate uridylyltransferase 2; pho 100.0
2oeg_A 505 UTP-glucose-1-phosphate uridylyltransferase 2, put 100.0
2i5k_A 488 UTP--glucose-1-phosphate uridylyltransferase; LEFT 100.0
2icy_A 469 Probable UTP-glucose-1-phosphate uridylyltransfera 100.0
3st8_A 501 Bifunctional protein GLMU; acetyltransferase, pyro 98.12
3oam_A252 3-deoxy-manno-octulosonate cytidylyltransferase; c 97.61
3tqd_A256 3-deoxy-manno-octulosonate cytidylyltransferase; c 97.51
3brk_X 420 Glucose-1-phosphate adenylyltransferase; ADP-gluco 97.51
4ecm_A269 Glucose-1-phosphate thymidylyltransferase; HET: DA 97.5
3k8d_A264 3-deoxy-manno-octulosonate cytidylyltransferase; K 97.33
3juk_A281 UDP-glucose pyrophosphorylase (GALU); transfer; HE 97.29
1ezi_A228 CMP-N-acetylneuraminic acid synthetase; homodimer, 97.27
2waw_A199 MOBA relate protein; unknown function; HET: PGE; 1 97.24
1yp2_A 451 Glucose-1-phosphate adenylyltransferase small subu 97.09
3f1c_A246 Putative 2-C-methyl-D-erythritol 4-phosphate cytid 97.07
1h7e_A245 3-deoxy-manno-octulosonate cytidylyltransferase; n 97.0
4fce_A 459 Bifunctional protein GLMU; GLMU. csgid, niaid, str 96.93
4fcu_A253 3-deoxy-manno-octulosonate cytidylyltransferase; s 96.92
1qwj_A229 Cytidine monophospho-N-acetylneuraminic acid synth 96.89
1tzf_A259 Glucose-1-phosphate cytidylyltransferase; nucleoti 96.65
2wee_A197 MOBA-related protein; unknown function; 1.65A {Myc 96.59
2xwl_A223 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; 96.49
2yc3_A228 2-C-methyl-D-erythritol 4-phosphate cytidylyltran 96.41
1vpa_A234 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; 96.39
3q80_A231 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; 96.37
1i52_A236 4-diphosphocytidyl-2-C-methylerythritol synthase; 96.36
1fxo_A293 Glucose-1-phosphate thymidylyltransferase; rhamnos 96.34
1lvw_A295 Glucose-1-phosphate thymidylyltransferase; protein 96.33
3rsb_A196 Adenosylcobinamide-phosphate guanylyltransferase; 96.33
3pnn_A303 Conserved domain protein; structural genomics, PSI 96.29
1vgw_A231 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; 96.29
1hm9_A 468 GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltr 96.28
1mc3_A296 Glucose-1-phosphate thymidylyltransferase; glucose 96.26
3d5n_A197 Q97W15_sulso; NESG, SSR125, structural genomics, P 96.24
2vsh_A236 TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly 96.13
1e5k_A201 Molybdopterin-guanine dinucleotide biosynthesis pr 96.06
2px7_A236 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans 95.98
2qh5_A308 PMI, ALGA, mannose-6-phosphate isomerase; structur 95.94
2v0h_A 456 Bifunctional protein GLMU; cell WALL, magnesium, c 95.87
3ngw_A208 Molybdopterin-guanine dinucleotide biosynthesis P 95.75
2y6p_A234 3-deoxy-manno-octulosonate cytidylyltransferase; l 95.71
1jyk_A254 LICC protein, CTP:phosphocholine cytidylytransfera 95.46
2e3d_A302 UTP--glucose-1-phosphate uridylyltransferase; UDP- 95.27
2xme_A232 CTP-inositol-1-phosphate cytidylyltransferase; CDP 95.25
2e8b_A201 Probable molybdopterin-guanine dinucleotide biosy 95.16
4evw_A255 Nucleoside-diphosphate-sugar pyrophosphorylase; st 95.14
2ux8_A297 Glucose-1-phosphate uridylyltransferase; UGPG, GAL 95.05
2x65_A336 Mannose-1-phosphate guanylyltransferase; nucleotid 94.82
1vic_A262 3-deoxy-manno-octulosonate cytidylyltransferase; s 94.78
2pa4_A323 UTP-glucose-1-phosphate uridylyltransferase; phosp 94.74
1w55_A371 ISPD/ISPF bifunctional enzyme; biosynthetic pathwa 94.19
2cu2_A337 Putative mannose-1-phosphate guanylyl transferase; 93.53
2ggo_A 401 401AA long hypothetical glucose-1-phosphate thymid 92.76
2dpw_A232 Hypothetical protein TTHA0179; transferase, struct 92.25
>3ogz_A UDP-sugar pyrophosphorylase; LEFT handed beta helix, rossmann fold, UDP sugar pyrophospho transferase; 2.03A {Leishmania major} PDB: 3oh3_A* 3oh1_A* 3oh0_A* 3oh2_A* 3oh4_A* Back     alignment and structure
Probab=100.00  E-value=8e-73  Score=623.83  Aligned_cols=352  Identities=21%  Similarity=0.216  Sum_probs=292.9

Q ss_pred             ccHHHHHHHHHH--cCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHH
Q 008010          134 LDQLFLIKCVIA--AGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLA  211 (581)
Q Consensus       134 ~~~~~l~~~L~~--~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~  211 (581)
                      ++...|+++|.+  +||+|||++   |++.                                 |+| ++++|++|++||.
T Consensus         7 ~~~~~L~~~l~~~~~gQ~HLf~~---w~~~---------------------------------l~~-~~~e~~~L~~qL~   49 (630)
T 3ogz_A            7 SNLQALREELCTPGLDQGHLFEG---WPET---------------------------------VDE-CNERQIALLTDLY   49 (630)
T ss_dssp             HHHHHHHHHHTSTTTCCGGGGTT---CCSS---------------------------------GGG-CCHHHHHHHHHHH
T ss_pred             hhHHHHHHHhhhccCCchhhhhh---cccc---------------------------------cCC-CHHHHHHHHHHHH
Confidence            467889999997  999999999   9882                                 442 2459999999999


Q ss_pred             HhhccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-cCC---CCcccccCchHHHHHHHHHHhccC
Q 008010          212 EIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVP---SGLDLSQNTEYAAQAALWGIEGLP  287 (581)
Q Consensus       212 ~id~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP---~g~~ls~~~~~~~~~~~~G~e~L~  287 (581)
                      .+|..|  +|||.+|+++|++++. +.+   +.          ++++.+ ++|   .+..++...+.....+++|.+.|+
T Consensus        50 ~~d~~~--~~gl~~~~~~a~~~l~-~~~---~~----------~~~~~~~p~P~~~~~~~l~~~~~~~~~~~~~Gl~~i~  113 (630)
T 3ogz_A           50 MFSNMY--PGGVAQYIRNGHELLA-RES---EE----------VDFAALEMPPLIFEAPSLHRRTAERTALENAGTAMLC  113 (630)
T ss_dssp             HGGGTS--TTHHHHHHHHHHHHHH-HHT---SC----------CCCSEEECCSCEEECCCTTCCCHHHHHHHHHHHHHGG
T ss_pred             hhChhh--hhhHHHHHHHHHHHhh-ccc---cC----------CcccccccCCCCCccccccCCHHHHHHHHHHhHHHHh
Confidence            999988  6999999999999993 321   11          234444 344   355555555556667789999999


Q ss_pred             ceeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHH
Q 008010          288 ELGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERIT  367 (581)
Q Consensus       288 kia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~  367 (581)
                      ++|+|+||||||||||+++||+  +|||+ +| +++||||++++||++       .+|  +.||||||||+  +||++|+
T Consensus       114 kvavvllaGGlGTRLG~~~pK~--~lpv~-~~-s~ks~lql~~e~i~~-------~~g--~~iPl~IMTS~--~T~~~T~  178 (630)
T 3ogz_A          114 KTVFVLVAGGLGERLGYSSIKV--SLPVE-TA-TNTTYLAYYLRWAQR-------VGG--KEVPFVIMTSD--DTHDRTL  178 (630)
T ss_dssp             GEEEEEECCCEEGGGTEEEEGG--GSBSC-TT-TCCBHHHHHHHHHHH-------HHC--TTCCEEEEECT--TTHHHHH
T ss_pred             hceEEEecCCcccccCCCCCcc--cceec-CC-CCCcHHHHHHHHHHH-------HhC--CCCcEEEEecc--cchHHHH
Confidence            9999999999999999999999  99998 45 499999999999993       346  79999999999  6999999


Q ss_pred             HHHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcC------------------ch
Q 008010          368 SLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKG------------------IF  429 (581)
Q Consensus       368 ~flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sG------------------lL  429 (581)
                      +||++   ||++++||+||+|+++||+++++|+|+++++++++|+|+||||||.+|+++|                  +|
T Consensus       179 ~~~~~---fgl~~~~V~~F~Q~~~P~i~~~~g~l~l~~~~~i~~~P~GhGdv~~aL~~sG~~~~~~~~~~~~~~~~~~lL  255 (630)
T 3ogz_A          179 QLLRE---LQLEVPNLHVLKQGQVFCFADSAAHLALDETGKLLRKPHGHGDVHSLIYNATVKRDVVPDSGDGTATAQPLV  255 (630)
T ss_dssp             HHHHH---TTCCCTTEEEEECCCEECBSSTTCCBCBCTTSSBCEECCCTTHHHHHHHHCBC--------------CCBHH
T ss_pred             HHHHH---hCCCcccEEEEEcCCEEEEecCCCceeecCCCcccCCCCCCHHHHHHHHHcCCCcccccccccccccHHHHH
Confidence            99999   9999999999999999999877799999999999999999999999999999                  99


Q ss_pred             HHHHHcCceEEEEEeCCCcccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEec
Q 008010          430 KWFHDNGRKGATVRQVSNVVAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYT  508 (581)
Q Consensus       430 d~l~~~Gikyi~v~~vDN~Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYs  508 (581)
                      ++|+++|+|||||+||||+|++ +||.   |+|+++..+.++++++|+|  .+.|.+|++|..++.||+. .+++||||+
T Consensus       256 d~l~~~Gieyi~v~~vDN~L~~~~DP~---~lG~~~~~~~d~~~kvv~r--~p~E~vG~l~~~~~~dGk~-~~v~vVEYs  329 (630)
T 3ogz_A          256 NDWLAAGYESIVFIQDTNAGATITIPI---SLALSAEHSLDMNFTCIPR--VPKEPIGLLCRTKKNSGDP-WLVANVEYN  329 (630)
T ss_dssp             HHHHHTTCCEEEEECTTBTTHHHHHHH---HHHHHHHTTCSEEEEEECC--CSSCSSCEEEEEESSTTSC-CEEEEECHH
T ss_pred             HHHHHcCCEEEEEEccCCccccccCHH---HhHHHHhcCCCEEEEEEEC--CCCcceeeEEEEecCCCce-eeeeEEEec
Confidence            9999999999999999999998 9998   4899999999999997665  3566677777655678981 145889999


Q ss_pred             ccCCCCCCCCCCC------CCCcccccCCccceeEEeHHHHHHhhcccCCCCcccccccCCCCc
Q 008010          509 EFDKFGITRGPFS------SNGLQADFPANTNILYVDLASAELVGSSENERSLPGMVLNTKKPI  566 (581)
Q Consensus       509 El~~~~~~~~~~~------dg~l~S~F~~NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkI  566 (581)
                      ||++. +++.+++      +.+.+++||+|||||||+|+++.+.+.. ....||.++  +.|.+
T Consensus       330 ei~~~-~~~~~~~~g~~~~~~~~~~~f~GNtNnl~~~L~a~~~~l~~-~~~~ip~~v--NpK~~  389 (630)
T 3ogz_A          330 VFAEV-SRALNKDGGDEVSDPTGFSPFPGSVNTLVFKLSSYVDRLRE-SHGIVPEFI--NPKYS  389 (630)
T ss_dssp             HHHHH-HHHC------------CCCSSCEEEEEEEEEHHHHHHHHHH-HTTCCCCEE--CCCBS
T ss_pred             cCCHh-HhhccCCCccccccccccccccccceeeeEEHHHHHHHHHh-ccCccceec--CCccc
Confidence            99984 5443332      3345688999999999999988877764 457899888  66644
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A* Back     alignment and structure
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A* Back     alignment and structure
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta barrel, nucleotidyltransferase; 3.57A {Homo sapiens} PDB: 3r2w_A Back     alignment and structure
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica} Back     alignment and structure
>3gue_A UTP-glucose-1-phosphate uridylyltransferase 2; phosphatase, UDP, structural GE structural genomics consortium, SGC; HET: UPG PG4; 1.92A {Trypanosoma brucei} Back     alignment and structure
>2oeg_A UTP-glucose-1-phosphate uridylyltransferase 2, putative; rossmann-fold, beta-helix, pyrophosphorylase; HET: UPG; 2.30A {Leishmania major} PDB: 2oef_A* Back     alignment and structure
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* Back     alignment and structure
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 Back     alignment and structure
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 Back     alignment and structure
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens} Back     alignment and structure
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* Back     alignment and structure
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* Back     alignment and structure
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* Back     alignment and structure
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A Back     alignment and structure
>2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} Back     alignment and structure
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A* Back     alignment and structure
>3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 Back     alignment and structure
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* Back     alignment and structure
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* Back     alignment and structure
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A Back     alignment and structure
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 Back     alignment and structure
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A* Back     alignment and structure
>2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A Back     alignment and structure
>2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* Back     alignment and structure
>2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* Back     alignment and structure
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13 Back     alignment and structure
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* Back     alignment and structure
>1i52_A 4-diphosphocytidyl-2-C-methylerythritol synthase; cytidylyltransferase, deoxyxylulose-5-phosphate pathway (DXP isoprenoid biosynthesys, MEP; HET: CTP; 1.50A {Escherichia coli} SCOP: c.68.1.13 PDB: 1ini_A* 1inj_A 1vgt_A 1vgu_A 3n9w_A 1h3m_A Back     alignment and structure
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... Back     alignment and structure
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6 Back     alignment and structure
>3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} Back     alignment and structure
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} Back     alignment and structure
>1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A Back     alignment and structure
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A* Back     alignment and structure
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6 Back     alignment and structure
>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} Back     alignment and structure
>2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* Back     alignment and structure
>1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* Back     alignment and structure
>2px7_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; TTHA0171, ISPD_THET8, ISPD, structural genomics PSI; 2.20A {Thermus thermophilus HB8} Back     alignment and structure
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} Back     alignment and structure
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* Back     alignment and structure
>3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} Back     alignment and structure
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A* Back     alignment and structure
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli} Back     alignment and structure
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A* Back     alignment and structure
>2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} Back     alignment and structure
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae} Back     alignment and structure
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} Back     alignment and structure
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A* Back     alignment and structure
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* Back     alignment and structure
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A* Back     alignment and structure
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20 Back     alignment and structure
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A* Back     alignment and structure
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 581
d1jv1a_ 501 c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphor 9e-38
d2icya2378 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 2e-19
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Length = 501 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

 Score =  143 bits (363), Expect = 9e-38
 Identities = 86/449 (19%), Positives = 155/449 (34%), Gaps = 87/449 (19%)

Query: 132 LNLDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAK 191
           +N++ L     +  AGQEH+L    E  E++     +  LYA ++ ++            
Sbjct: 1   MNINDL--KLTLSKAGQEHLLRFWNELEEAQ-----QVELYAELQAMN------------ 41

Query: 192 DAVLEIEQVKDLNKLLKTLAEIEQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHE 251
                               E+  F+             +E   QS         ++V  
Sbjct: 42  ------------------FEELNFFFQKA----------IEGFNQSS------HQKNVDA 67

Query: 252 SMECQFLEIHVPSGLDLSQNTEYAAQAALWGIEGLPE--LGEIYPLGGSADRLGLVDHET 309
            ME    E+   +  D  Q   + ++    G+  + +  +  +   GG   RLG+     
Sbjct: 68  RMEPVPREVLGSATRDQDQLQAWESE----GLFQISQNKVAVLLLAGGQGTRLGVAY--- 120

Query: 310 GECLPAAMLP---YCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERI 366
               P  M        +TL +     +   + +  K YG +CI P  IMTS      E  
Sbjct: 121 ----PKGMYDVGLPSRKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTS--GRTMEST 174

Query: 367 TSLCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDK 426
                + ++FG  + +   F+Q ++PA+   DG+ ++         P G+G +++    +
Sbjct: 175 KEFFTKHKYFGLKKENVIFFQQGMLPAMS-FDGKIILEEKNKVSMAPDGNGGLYRALAAQ 233

Query: 427 GIFKWFHDNGRKGATVRQVSNVVAATDLTLLALAGIGLHHGKKLGFASCKRSSGATEGIN 486
            I +     G     V  V N++           G  +  G   G    ++++  TE + 
Sbjct: 234 NIVEDMEQRGIWSIHVYCVDNILVKV--ADPRFIGFCIQKGADCGAKVVEKTN-PTEPVG 290

Query: 487 VLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQADFPANTNILYVDLASAELV 546
           V+      DG        +EY+E      T    SS+G       N    +  +     V
Sbjct: 291 VVCRV---DGV----YQVVEYSEISLA--TAQKRSSDGRLLFNAGNIANHFFTVPFLRDV 341

Query: 547 GSSENERSLPGMVLNTKKPIVYMDNFGDT 575
             +  E  L   V   +K I Y+D  G  
Sbjct: 342 -VNVYEPQLQHHV--AQKKIPYVDTQGQL 367
>d2icya2 c.68.1.5 (A:6-383) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 378 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query581
d1jv1a_ 501 UDP-N-acetylglucosamine pyrophosphorylase {Human ( 100.0
d2icya2378 UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale c 100.0
d1w77a1226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 97.59
d1yp2a2307 Glucose-1-phosphate adenylyltransferase small subu 97.56
d1lvwa_295 RmlA (RfbA) {Archaeon Methanobacterium thermoautot 97.51
d2cu2a2268 Putative mannose-1-phosphate guanylyl transferase 97.49
d1mc3a_291 RffH {Escherichia coli [TaxId: 562]} 97.31
d1e5ka_188 Molybdenum cofactor biosynthesis protein MobA {Esc 97.3
d1fxoa_292 RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} 97.3
d2oi6a2248 N-acetylglucosamine 1-phosphate uridyltransferase 97.26
d1i52a_225 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 97.25
d1g97a2250 N-acetylglucosamine 1-phosphate uridyltransferase 97.17
d1tzfa_259 Glucose-1-phosphate cytidylyltransferase RfbF {Sal 97.13
d1jyka_229 CTP:phosphocholine cytidylytransferase LicC {Strep 97.04
d1w55a1205 IspD/IspF bifunctional enzyme, CDP-me synthase dom 96.97
d1vgwa_226 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 96.96
d1vpaa_221 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) 96.92
d2dpwa1231 Uncharacterized protein TTHA0179 {Thermus thermoph 95.06
>d1jv1a_ c.68.1.5 (A:) UDP-N-acetylglucosamine pyrophosphorylase {Human (Homo sapiens), AGX1 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: UDP-glucose pyrophosphorylase
domain: UDP-N-acetylglucosamine pyrophosphorylase
species: Human (Homo sapiens), AGX1 [TaxId: 9606]

Probab=100.00  E-value=1.8e-80  Score=673.15  Aligned_cols=362  Identities=22%  Similarity=0.306  Sum_probs=314.5

Q ss_pred             ccHHHHHHHHHHcCCccccccCCcccchhhhhhhHHHHHHHHHHhhhccccCCCccchhhhcchhcHHHHHHHHHHHHHh
Q 008010          134 LDQLFLIKCVIAAGQEHVLNLEPEYVESEARSDIKSALYALVEFIDRLDVNGRNSEAKDAVLEIEQVKDLNKLLKTLAEI  213 (581)
Q Consensus       134 ~~~~~l~~~L~~~gQ~Hll~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ek~~Ll~qL~~i  213 (581)
                      |+.++|++.|.++||+|||.+   |++                                  |+++   +|++|++||..+
T Consensus         1 m~~~~l~~~L~~~gQ~HLl~~---~~~----------------------------------l~~~---ek~~L~~qL~~i   40 (501)
T d1jv1a_           1 MNINDLKLTLSKAGQEHLLRF---WNE----------------------------------LEEA---QQVELYAELQAM   40 (501)
T ss_dssp             CCHHHHHHHHHHTTCGGGGTT---GGG----------------------------------SCHH---HHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHhCcHHHHhh---hhh----------------------------------CCHH---HHHHHHHHHHhc
Confidence            567889999999999999999   998                                  7665   999999999999


Q ss_pred             hccccCCCchHHHHHHHHHHHHhchhccccccccccccccccccccc-cCCCCcccc--cCchHHHHHHHHHHhccC--c
Q 008010          214 EQFYDCVGGIIGYQVEVLELLAQSKFERKTTKSQHVHESMECQFLEI-HVPSGLDLS--QNTEYAAQAALWGIEGLP--E  288 (581)
Q Consensus       214 d~~y~~~ggl~~y~~~a~~ll~~s~~~~~~~n~~~~~~~~~~~~~~~-~vP~g~~ls--~~~~~~~~~~~~G~e~L~--k  288 (581)
                      |.     +++..|++++.+.+..++.   ..          ++++.+ |+|.....+  ...+....+++.|.+.++  +
T Consensus        41 d~-----~~l~~~~~~a~~~~~~~~~---~~----------~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~G~~~i~~gk  102 (501)
T d1jv1a_          41 NF-----EELNFFFQKAIEGFNQSSH---QK----------NVDARMEPVPREVLGSATRDQDQLQAWESEGLFQISQNK  102 (501)
T ss_dssp             CH-----HHHHHHHHHHHHCC------------------------CCBCCCGGGEEETTTTGGGHHHHHHHHHHHHHTTC
T ss_pred             CH-----HHHHHHHHHHHHHhhhccc---cc----------CccccccCCChhhhcccccChHHHHHHHHhhHHHHhcCC
Confidence            84     7899999999877665431   11          234455 566543322  233334455567888884  7


Q ss_pred             eeEEEecCCCcCCCCCCCCCCCccccCcccCCCCCccHHHHHHHHHHHHHHHHHhcCCcccceEEEecCCCCCchHHHHH
Q 008010          289 LGEIYPLGGSADRLGLVDHETGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKLYGKQCITPVAIMTSSAKNNHERITS  368 (581)
Q Consensus       289 ia~VlLAGGqGTRLG~~~PKgg~~lpvg~lps~gkSllql~~e~I~~lq~La~~~~g~~~~IPl~IMTS~~~~The~T~~  368 (581)
                      +|+|+||||||||||+++|||  ++||+ +|+ ++||||++++||+++|++|.+++|..+.||||||||+  +||++|++
T Consensus       103 vavvllaGG~GTRLG~~~pK~--~~~v~-~~~-~ksllql~~e~i~~l~~~a~~~~~~~~~iPl~IMtS~--~T~~~t~~  176 (501)
T d1jv1a_         103 VAVLLLAGGQGTRLGVAYPKG--MYDVG-LPS-RKTLFQIQAERILKLQQVAEKYYGNKCIIPWYIMTSG--RTMESTKE  176 (501)
T ss_dssp             EEEEEECCCCCCTTSCSSCGG--GCCCC-CTT-CCCHHHHHHHHHHHHHHHHHHHHSSCCCCCEEEEECT--TTHHHHHH
T ss_pred             EEEEEECCCccccCCCCCCce--eeeec-cCC-CCcHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECCh--hHhHHHHH
Confidence            999999999999999999999  99998 554 9999999999999999999998888789999999999  59999999


Q ss_pred             HHHHcCCCCCCCCceEEEecCceeeEecCCCccccccCCCccccCCCCcHHHHHHHhcCchHHHHHcCceEEEEEeCCCc
Q 008010          369 LCERLRWFGRGQSSFQLFEQPLVPAVDAEDGQWLVMRPFAPVCKPGGHGAIWKLAHDKGIFKWFHDNGRKGATVRQVSNV  448 (581)
Q Consensus       369 flekn~yFGl~~~qV~~F~Q~~vP~l~~~~Gkill~~~~~i~~~P~GhGdIy~aL~~sGlLd~l~~~Gikyi~v~~vDN~  448 (581)
                      ||++|+|||+++++|+||+|+++||++.+ |+++++++++++|+|+||||||.+|+++|++++|.++||+|++|+||||+
T Consensus       177 ~l~~~~~FGl~~~~v~~f~Q~~~P~~~~~-g~i~~~~~~~i~~~P~GhG~i~~aL~~sG~ld~l~~~Gi~yi~v~~vDN~  255 (501)
T d1jv1a_         177 FFTKHKYFGLKKENVIFFQQGMLPAMSFD-GKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNI  255 (501)
T ss_dssp             HHHHTGGGGSCGGGEEEEECCEEECEETT-SCBCEEETTEECEEECCGGGHHHHHHHTTHHHHHHHTTCCEEEEEETTBT
T ss_pred             HHHhccccCCCcCceEEEEecCcceECCC-CCcccCCCCcccccCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecCCc
Confidence            99999999999999999999999999977 99999999999999999999999999999999999999999999999999


Q ss_pred             ccc-cchhhHHHhhhhhhcCCceeEEEEeccCCCcccceEEEEeecCCCccccceEEEEecccCCCCCCCCCCCCCCccc
Q 008010          449 VAA-TDLTLLALAGIGLHHGKKLGFASCKRSSGATEGINVLIEKKNLDGKWAYGLSCIEYTEFDKFGITRGPFSSNGLQA  527 (581)
Q Consensus       449 Lak-~DP~~~~~lG~~~~~~~~~~~~~v~RK~~adegvgvLv~k~~~dGke~~gv~~VEYsEl~~~~~~~~~~~dg~l~S  527 (581)
                      |++ +||.   |+|+++..+.++++++ ++|+.++|++|++|..   ||+    +++|||+|+++ ++++..+++|++. 
T Consensus       256 l~~~~Dp~---~lG~~~~~~~~~~~kv-v~k~~~~e~~G~l~~~---dg~----~~vvEysel~~-~~~~~~~~~g~l~-  322 (501)
T d1jv1a_         256 LVKVADPR---FIGFCIQKGADCGAKV-VEKTNPTEPVGVVCRV---DGV----YQVVEYSEISL-ATAQKRSSDGRLL-  322 (501)
T ss_dssp             TCCTTCHH---HHHHHHHTTCSEEEEE-EECCSTTCSCCEEEEE---TTE----EEEECGGGSCH-HHHHCBCTTSSBS-
T ss_pred             cccccCHH---HHHHHHhcccceeEEE-EEcCCCCcccceEEEE---CCe----EEEEEeccCCH-HHHhhccCCCccc-
Confidence            988 9998   5999999999999995 6678899999999975   899    99999999999 4777888889877 


Q ss_pred             ccCC-ccceeEEeHHHHHHhhcccCCCCcccccccCCCCccccCCCCCeee
Q 008010          528 DFPA-NTNILYVDLASAELVGSSENERSLPGMVLNTKKPIVYMDNFGDTHR  577 (581)
Q Consensus       528 ~F~~-NiN~l~fsL~~L~~v~~~~~~~~LP~Hv~na~KkIpy~D~~G~~~~  577 (581)
                       |++ |||||||+++||+++++. ....||+|+  |+|||||+|.+|..++
T Consensus       323 -f~~~Ni~~~~fsl~fl~~~~~~-~~~~l~~hv--a~Kki~~~d~~~~~~~  369 (501)
T d1jv1a_         323 -FNAGNIANHFFTVPFLRDVVNV-YEPQLQHHV--AQKKIPYVDTQGQLIK  369 (501)
T ss_dssp             -SCEEEEEEEEEEHHHHHHHHHT-TGGGCCCEE--EEECCCEECTTSCEEC
T ss_pred             -ccccceeheeeEHHHHHHHHHh-cccCCCceE--eccccCccCCCCCccc
Confidence             877 999999999999999975 567899999  8899999999998764
>d1w77a1 c.68.1.13 (A:75-300) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1yp2a2 c.68.1.6 (A:10-316) Glucose-1-phosphate adenylyltransferase small subunit, catalytic domain {Potato (Solanum tuberosum) [TaxId: 4113]} Back     information, alignment and structure
>d1lvwa_ c.68.1.6 (A:) RmlA (RfbA) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2cu2a2 c.68.1.20 (A:1-268) Putative mannose-1-phosphate guanylyl transferase (GDP)/mannose-6-phosphate isomerase TTHA1750 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1mc3a_ c.68.1.6 (A:) RffH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2oi6a2 c.68.1.5 (A:4-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i52a_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g97a2 c.68.1.5 (A:2-251) N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase RfbF {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase LicC {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1vgwa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Neisseria gonorrhoeae [TaxId: 485]} Back     information, alignment and structure
>d1vpaa_ c.68.1.13 (A:) 4-diphosphocytidyl-2C-methyl-D-erythritol (CDP-me) synthase (IspD, YgbP) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure